Identification_Information: Citation: Citation_Information: Originator: David S. Foster Originator: VeeAnn A. Cross Publication_Date: 2012 Title: IRIS Chirp Seismic-Reflection Profile JPEG Images Collected in Apalachicola Bay on U.S. Geological Survey Cruise 06001 Series_Information: Series_Name: Open-File Report Issue_Identification: 2012-1003 Publication_Information: Publication_Place: Woods Hole Coastal and Marine Science Center, Woods Hole, MA Publisher: U.S. Geological Survey, Coastal and Marine Geology Program Online_Linkage: http://pubs.usgs.gov/of/2012/1003/data/seismic_imgs/seisimages.zip Online_Linkage: http://pubs.usgs.gov/of/2012/1003/html/catalog.html Larger_Work_Citation: Citation_Information: Originator: V.A. Cross Originator: D.C. Twichell Originator: D.S. Foster Originator: T.F. O'Brien Publication_Date: 2012 Title: Apalachicola Bay Interpreted Seismic Horizons and Updated IRIS Chirp Seismic-Reflection Data Edition: 1 Series_Information: Series_Name: Open-File Report Issue_Identification: 2012-1003 Publication_Information: Publication_Place: Woods Hole Coastal and Marine Science Center, Woods Hole, MA Publisher: U.S. Geological Survey, Coastal and Marine Geology Program Online_Linkage: http://pubs.usgs.gov/of/2012/1003/ Description: Abstract: Apalachicola Bay and St. George Sound contain the largest oyster fishery in Florida, and the growth and distribution of the numerous oyster reefs here are the combined product of modern estuarine conditions and the late Holocene evolution of the bay. A suite of geophysical data and cores were collected during a cooperative study by the U.S. Geological Survey, the National Oceanic and Atmospheric Administration Coastal Services Center, and the Apalachicola National Estuarine Research Reserve to refine the geology of the bay floor as well as the bay's Holocene stratigraphy. Sidescan-sonar imagery, bathymetry, high-resolution seismic profiles, and cores show that oyster reefs occupy the crests of sandy shoals that range from 1 to 7 kilometers in length, while most of the remainder of the bay floor is covered by mud. The sandy shoals are the surficial expression of broader sand deposits associated with deltas that advanced southward into the bay between 6,400 and 4,400 years before present. The seismic and core data indicate that the extent of oyster reefs was greatest between 2,400 and 1,200 years before present and has decreased since then due to the continued input of mud to the bay by the Apalachicola River. The association of oyster reefs with the middle to late Holocene sandy delta deposits indicates that the present distribution of oyster beds is controlled in part by the geologic evolution of the estuary. For more information on the surveys involved in this project, see http://woodshole.er.usgs.gov/operations/ia/public_ds_info.php?fa=2005-001-FA and http://woodshole.er.usgs.gov/operations/ia/public_ds_info.php?fa=2006-001-FA. Purpose: These images are provided as an archive of the IRIS seismic-reflection profile images collected on USGS Field Activity 2006-001-FA. These images generally correspond to the lines presented in the polyline shapefile asv_lines_Calibrated available from:http://pubs.usgs.gov/of/2012/1003/html/catalog.html. The polylines represent the lines used to load the data into seismic interpretation software so some of the lines are split in two parts. But the shot point navigation and linear referencing measurement (shots) do reflect the same information as the images. Time_Period_of_Content: Time_Period_Information: Range_of_Dates/Times: Beginning_Date: 20060603 Ending_Date: 20060627 Currentness_Reference: ground condition Status: Progress: Complete Maintenance_and_Update_Frequency: None planned Spatial_Domain: Bounding_Coordinates: West_Bounding_Coordinate: -85.062710 East_Bounding_Coordinate: -84.809553 North_Bounding_Coordinate: 29.746692 South_Bounding_Coordinate: 29.618457 Keywords: Theme: Theme_Keyword_Thesaurus: General Theme_Keyword: U.S. Geological Survey Theme_Keyword: USGS Theme_Keyword: Coastal and Marine Geology Program Theme_Keyword: CMGP Theme_Keyword: Woods Hole Coastal and Marine Science Center Theme_Keyword: WHCMSC Theme_Keyword: Field Activity Serial Number 06001 Theme_Keyword: Field Activity 2006-001-FA Theme_Keyword: Info Bank ID R-1-06-GM Theme_Keyword: seismic-reflection Theme_Keyword: Chirp seismics Theme_Keyword: ASV IRIS Theme_Keyword: Autonomous Surface Vessel Theme_Keyword: Independently (or) Remotely Influenced Surveyor Theme_Keyword: EdgeTech FSSB 424 Theme: Theme_Keyword_Thesaurus: ISO 19115 Topic Category Theme_Keyword: oceans Theme_Keyword: oceans and estuaries Theme_Keyword: oceans and coastal Theme_Keyword: geoscientificInformation Place: Place_Keyword_Thesaurus: General Place_Keyword: Apalachicola Bay Place_Keyword: Florida Place_Keyword: Apalachicola National Estuarine Research Reserve Place_Keyword: Gulf of Mexico Place_Keyword: United States Place_Keyword: St. Vincent Island Place_Keyword: Little St. George Island Place_Keyword: St. George Island Place_Keyword: North America Access_Constraints: None. Use_Constraints: Public domain data from the U.S. Government are freely redistributable with proper metadata and source attribution. Please recognize the U.S. Geological Survey (USGS) as the originators of this dataset. Point_of_Contact: Contact_Information: Contact_Person_Primary: Contact_Person: David C. Twichell Contact_Organization: U.S. Geological Survey Contact_Position: Oceanographer Contact_Address: Address_Type: mailing and physical address Address: Woods Hole Coastal and Marine Science Center Address: 384 Woods Hole Rd. City: Woods Hole State_or_Province: MA Postal_Code: 02543-1598 Contact_Voice_Telephone: (508) 548-8700 x2266 Contact_Facsimile_Telephone: (508) 457-2310 Contact_Electronic_Mail_Address: dtwichell@usgs.gov Native_Data_Set_Environment: Microsoft Windows XP Version 5.1 (Build 2600) Service Pack 3; ESRI ArcCatalog 9.2.6.1500 Cross_Reference: Citation_Information: Originator: D.C. Twichell Originator: B.D. Andrews Originator: H.L. Edmiston Originator: W.R. Stevenson Publication_Date: 2007 Title: Geophysical mapping of oyster habitats in a shallow estuary; Apalachicola Bay, Florida Edition: 1 Series_Information: Series_Name: Open-File Report Issue_Identification: 2006-1381 Publication_Information: Publication_Place: Woods Hole Science Center, Woods Hole, MA Publisher: U.S. Geological Survey, Coastal and Marine Geology Program Online_Linkage: http://pubs.usgs.gov/of/2006/1381/ Cross_Reference: Citation_Information: Originator: D.C. Twichell Originator: E.A. Pendleton Originator: R.Z. Poore Originator: L.E. Osterman Originator: K.W. Kelso Publication_Date: 2009 Title: Vibracore, radiocarbon, microfossil, and grain-size data from Apalachicola Bay, Florida Edition: 1 Series_Information: Series_Name: Open-File Report Issue_Identification: 2009-1031 Publication_Information: Publication_Place: Woods Hole Coastal and Marine Science Center, Woods Hole, MA Publisher: U.S. Geological Survey, Coastal and Marine Geology Program Online_Linkage: http://pubs.usgs.gov/of/2009/1031/ Cross_Reference: Citation_Information: Originator: E. Bergeron Originator: C.R. Worley Originator: T.F. O'Brien Publication_Date: 2007 Title: Progress in the development of shallow-water mapping systems: using an autonomous surface vehicle for shallow-water geophysical studies Series_Information: Series_Name: Sea Technology Issue_Identification: v. 48, no. 6, p. 10-15 Publication_Information: Publication_Place: Arlington, VA Publisher: Compass Publications, Inc. Data_Quality_Information: Logical_Consistency_Report: Due to modifications to acquisition parameters during the initial days of surveying, the format in which navigation was stored in the SEG-Y headers varies: navigation is stored in either decimal arc seconds (0.01) or decimal arc minutes (0.0001). In order to properly extract and convert navigation to latitude/longitude divisors of 360000 and 600000 were used for decimal arc seconds and decimal arc minutes, respectively. Prior to JD172, the acquisition system did not consistently record longitude as a negative value (western hemisphere). Thus, either 600000 or -600000 was used to convert arc minutes to longitude based on whether the acquisition software recorded negative or positive longitude values. So although each line has a JPEG image, many lines had to be handled differently to acquire consistent results. Inconsistencies exist in the filenaming convention for individual seismic data collection lines. Because the filenames reflect the original data file names acquired in the field, they were left alone. Completeness_Report: No data were acquired on the following dates: 6/8/2006, 6/10/2006 6/12/2006, 6/13/2006, 6/15/2006, 6/16/2006, 6/17/2006, 6/18/2006, 6/19/2006, 6/20/2006. These dates correspond to Julian days 159, 161, 163, 164, 166, 167, 168, 169, 170, and 171 respectively. In addition, lines for which no valid seismic data were available were deleted. Positional_Accuracy: Horizontal_Positional_Accuracy: Horizontal_Positional_Accuracy_Report: IRIS was navigated with a Real-Time Kinematic (RTK) GPS, with the GPS antenna mounted directly over the seismic transducer. This system can provide positions to within 0.1 meters. However, due to some errors with the acquisition software, this accuracy is reduced. The accuracy is approximately 2 m given the constraints of the acquisition system. Vertical_Positional_Accuracy: Vertical_Positional_Accuracy_Report: The transducers for the IRIS system are barely below the water surface - less than half a meter. This depth is not adjusted for during acquisition or processing. Lineage: Source_Information: Source_Contribution: The data were collected using the USGS WHCMSC Autonomous Surface Vessel (ASV) IRIS. This system is designed to operate in shallow water (1-5 meters). IRIS is a catamaran platform 3 meters in length, 1.2 meters in width, and approximately 118 kilograms. The vehicle is operated remotely through a wireless modem network enabling real-time monitoring of data acquisition. The system is navigated using a ZXW RTK augmented GPS system enclosed on a platform in the middle of the catamaran. An enclosed onboard micro-processor-based motor controller provides signals for speed and steering to hull-mounted brushless direct-current thrusters. A center-mounted keel encloses the chirp dual-frequency (100/400 kHz model 4200 EdgeTech) sidescan-sonar transducers and EdgeTech 424 chirp seismic-reflection hydrophones. Mounted in the port hull are the EdgeTech 424 chirp seismic-reflection transducer and a single-beam 235 kHz echosounder. A Sony IP based wireless video camera is installed on the mast of IRIS for the purpose of obstacle avoidance. An onboard Fluxgate magnetometer provides heading, heave, pitch, and roll. IRIS is powered by 2-4 24-volt NiMH batteries located in each hull and has an approximate run-time of five hours at 4 knots. Process_Step: Process_Description: The seismic data were acquired with an EdgeTech SB-424 sub-bottom profiler and recorded in JSF format using JSTAR, EdgeTech's acquisition software. The research effort within Apalachicola Bay represented the first use of IRIS in full survey mode. As such, the system needed to be 'rung-out' during the first several days of surveying. A file naming convention developed over the first few days of surveying and acquisition settings (hardware and software) were modified several times until standardized settings could be established for Apalachicola Bay. Initial trouble-shooting dealt with several issues including a variation in the field in which navigation was stored within the JSF header and in the resolution of the navigation (seconds of arc vs. minutes of arc). Correcting these issues required re-running particular files though EdgeTech's DISCOVER software and saving new JSF files. Files that were saved through DISCOVER are signified by a 'yes' in the 'discover' field within the shapefile. A 'no' within the 'discover' field, indicates that the JSF file was correct in its original format; re-running through DISCOVER was not required. The JSF files were then converted to SEG-Y format using jsf2segy, a C-program written by Tom O'Brien at the Woods Hole, Science Center, U.S. Geological Survey. See the asv_lines_calibrated polyline shapefile available from http://pubs.usgs.gov/of/2012/1003/html/catalog.html to determine which files required re-running through EdgeTech's DISCOVER software. Process_Date: 2006 Process_Contact: Contact_Information: Contact_Person_Primary: Contact_Person: Tom O'Brien Contact_Organization: U.S. Geological Survey Contact_Position: Marine Geophysical Systems Expert Contact_Address: Address_Type: mailing and physical address Address: Woods Hole Coastal and Marine Science Center Address: 384 Woods Hole Rd. City: Woods Hole State_or_Province: MA Postal_Code: 02543-1598 Contact_Voice_Telephone: (508) 548-8700 x2246 Contact_Facsimile_Telephone: 5084572310 Contact_Electronic_Mail_Address: tobrien@usgs.gov Process_Step: Process_Description: These original SEG-Y files are in IEEE format and were converted to IBM floating point using SIOSEIS. In addition to this conversion, the shot numbers have been renumbered in order to start at one. Process_Date: 2006 Process_Contact: Contact_Information: Contact_Person_Primary: Contact_Person: David S. Foster Contact_Organization: U.S. Geological Survey Contact_Position: Geologist Contact_Address: Address_Type: mailing and physical address Address: Woods Hole Coastal and Marine Science Center Address: 384 Woods Hole Rd. City: Woods Hole State_or_Province: MA Postal_Code: 02543-1598 Contact_Voice_Telephone: (508) 548-8700 x2271 Contact_Facsimile_Telephone: (508) 457-2310 Contact_Electronic_Mail_Address: dfoster@usgs.gov Process_Step: Process_Description: A csh script utilized Seismic Unix (v. 4.0) to generate JPEG images of each seismic profile. Process_Date: 2006 Process_Contact: Contact_Information: Contact_Person_Primary: Contact_Person: David S. Foster Contact_Organization: U.S. Geological Survey Contact_Position: Geologist Contact_Address: Address_Type: mailing and physical address Address: Woods Hole Coastal and Marine Science Center Address: 384 Woods Hole Rd. City: Woods Hole State_or_Province: MA Postal_Code: 02543-1598 Contact_Voice_Telephone: (508) 548-8700 x2271 Contact_Facsimile_Telephone: (508) 457-2310 Contact_Electronic_Mail_Address: dfoster@usgs.gov Distribution_Information: Distributor: Contact_Information: Contact_Person_Primary: Contact_Person: VeeAnn A. Cross Contact_Organization: U.S. Geological Survey Contact_Position: Marine Geologist Contact_Address: Address_Type: mailing and physical address Address: Woods Hole Coastal and Marine Science Center Address: 384 Woods Hole Rd. City: Woods Hole State_or_Province: MA Postal_Code: 02543-1598 Contact_Voice_Telephone: (508) 548-8700 x2251 Contact_Facsimile_Telephone: (508) 457-2310 Contact_Electronic_Mail_Address: vatnipp@usgs.gov Resource_Description: Downloadable Data Distribution_Liability: Neither the U.S. government, the Department of the Interior, nor the USGS, nor any of their employees, contractors, or subcontractors, make any warranty, express or implied, nor assume any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, nor represent that its use would not infringe on privately owned rights. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by the USGS in the use of these data or related materials. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Standard_Order_Process: Digital_Form: Digital_Transfer_Information: Format_Name: WinZip Format_Version_Number: 9.0 Format_Information_Content: This WinZip file contains the seismic-reflection profile JPEG images as well as the associated metadata files. Transfer_Size: 59.89 MB Digital_Transfer_Option: Online_Option: Computer_Contact_Information: Network_Address: Network_Resource_Name: http://pubs.usgs.gov/of/2012/1003/data/seismic_imgs/seisimages.zip Network_Resource_Name: http://pubs.usgs.gov/of/2012/1003/html/catalog.html Fees: None. Technical_Prerequisites: This WinZip file contains seismic-reflection profiles as JPEG images. The user must have software capable of uncompressing the WinZip file and display the JPEGs. Metadata_Reference_Information: Metadata_Date: 20120125 Metadata_Contact: Contact_Information: Contact_Person_Primary: Contact_Person: VeeAnn A. Cross Contact_Organization: U.S. Geological Survey Contact_Position: Marine Geologist Contact_Address: Address_Type: mailing and physical address Address: Woods Hole Coastal and Marine Science Center Address: 384 Woods Hole Rd. City: Woods Hole State_or_Province: MA Postal_Code: 02543-1598 Contact_Voice_Telephone: (508) 548-8700 x2251 Contact_Facsimile_Telephone: (508) 457-2310 Contact_Electronic_Mail_Address: vatnipp@usgs.gov Metadata_Standard_Name: FGDC Content Standards for Digital Geospatial Metadata Metadata_Standard_Version: FGDC-STD-001-1998 Metadata_Time_Convention: local time Metadata_Extensions: Online_Linkage: http://www.esri.com/metadata/esriprof80.html Profile_Name: ESRI Metadata Profile