Robert S. Cornman
2025
<p>Background</p><p><span>Proteins encoded by the canonical transient receptor potential (Trpc) gene family form transmembrane channels involved in diverse signal-transduction pathways. </span><i>Trpc4</i><span> has been shown necessary for the induction of nonshivering thermogenesis (NST) in mice, a key component of which is thermogenic brown adipose tissue (BAT). In bats, T</span><i>rpc4</i><span> exhibited diversifying selection within exons encoding regulatory binding sites of TRPC4.</span></p><p><span>Methods</span></p><p><span>To assess whether diversification of these regulatory sequences mirrors the diversification of mammalian thermoregulatory strategies, the ratio of nonsynonymous to synonymous substitutions (ω) was estimated for multiple tetrapod outgroups and eutherian orders. Four questions were addressed: (1) Did the ancestral eutherian <i>Trpc4</i> diverge under positive selection from nonplacental mammals that lack BAT? (2) Did <i>Trpc4</i> subsequently become more constrained in descendant eutherian clades? (3) In eutherian clades that subsequently lost BAT by inactivation of the thermogenin gene <i>Ucp1</i>, did <i>Trpc4</i> become less constrained? (4) Does the evolutionary rate of <i>Trpc4</i> differ between quantitatively more heterothermic mammal orders (bats and rodents) relative to quantitatively less heterothermic outgroups (carnivores, artiodactylids, and primates)?</span></p><p><span>Results</span></p><p><span>Coincident with the advent of BAT, <i>Trpc4</i> evolutionary rate increased significantly in ancestral eutheria after their divergence from nonplacental mammals but a branch-site model did not support a rate class ω > 1 along that branch. In descendant eutherian mammals, <i>Trpc4</i> became far more constrained, with an evolutionary rate less than half that of tetrapod clades lacking NST, a pattern was not seen in other Trp channel genes. Intensifying selection in descendent eutherian mammals was further supported with the RELAX program, which also indicated reduced constraint on <i>Trpc4</i> in clades that have secondarily lost BAT. However, no consistent pattern was identified within mammalian orders with strong variation in heterothermy: evidence of increased evolutionary rate was again found in bats for <i>Trpc4</i> as well as homologs it directly binds in heteromeric membrane channels (<i>Trpc5</i> and <i>Trpc1</i>), yet all rodent Trpc genes had low evolutionary rates. Evolutionary rates of <i>Trpc4</i> and <i>Trpc1</i> in bats were consistent with relaxed constraint whereas bat <i>Trpc5</i> experienced diversifying selection. Most variation among tetrapod TRPC4 sequences lies within an 85 amino-acid window that is functionally uncharacterized. Sequence alignments demonstrated that the TRPC4 β isoform, which lacks a portion of the C-terminal regulatory region, originated in basal eutherians but appears to be lost in many tip lineages. Collectively, the data indicate that the C-terminal region of TRPC4 has responded to selection on NST thermoregulation during the diversification of eutherian mammals. The drivers of increased diversification of <i>Trpc4</i> and interacting genes in bats remain to be determined.</span></p>
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10.7717/peerj.19697
en
PeerJ
Molecular evolution of TRPC4 regulatory sequences supports a role in mammalian thermoregulatory adaptation
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