{"pageNumber":"1031","pageRowStart":"25750","pageSize":"25","recordCount":165485,"records":[{"id":70182807,"text":"70182807 - 2016 - Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability","interactions":[],"lastModifiedDate":"2017-03-01T11:03:39","indexId":"70182807","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1757,"text":"Geochemistry, Geophysics, Geosystems","active":true,"publicationSubtype":{"id":10}},"title":"Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability","docAbstract":"Methane seeps were investigated in Hudson Canyon, the largest shelf-break canyon on the northern US Atlantic Margin. The seeps investigated are located at or updip of the nominal limit of methane clathrate hydrate stability. The acoustic identification of bubble streams was used to guide water column sampling in a 32 km2 region within the canyon's thalweg. By incorporating measurements of dissolved methane concentration with methane oxidation rates and current velocity into a steady-state box model, the total emission of methane to the water column in this region was estimated to be 12 kmol methane per day (range: 6 – 24 kmol methane per day). These analyses suggest this methane is largely retained inside the canyon walls below 300 m water depth, and that it is aerobically oxidized to near completion within the larger extent of Hudson Canyon. Based on estimated methane emissions and measured oxidation rates, the oxidation of this methane to dissolved CO2 is expected to have minimal influences on seawater pH. This article is protected by copyright. All rights reserved.","language":"English","publisher":"Wiley ","doi":"10.1002/2016GC006421","usgsCitation":"Weinsten, A., Navarrete, L., Ruppel, C., Weber, T., Leonte, M., Kellermann, M., Arrington, E., Valentine, D., Scranton, M., and Kessler, J.D., 2016, Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability: Geochemistry, Geophysics, Geosystems, v. 17, no. 10, p. 3882-3892, https://doi.org/10.1002/2016GC006421.","productDescription":"11 p. ","startPage":"3882","endPage":"3892","ipdsId":"IP-076064","costCenters":[{"id":678,"text":"Woods Hole Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":470542,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1002/2016gc006421","text":"External Repository"},{"id":336729,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":336360,"type":{"id":15,"text":"Index Page"},"url":"https://onlinelibrary.wiley.com/doi/10.1002/2016GC006421/full"}],"volume":"17","issue":"10","publishingServiceCenter":{"id":11,"text":"Pembroke PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-13","publicationStatus":"PW","scienceBaseUri":"58b7eba6e4b01ccd5500baff","contributors":{"authors":[{"text":"Weinsten, A.","contributorId":184233,"corporation":false,"usgs":false,"family":"Weinsten","given":"A.","email":"","affiliations":[],"preferred":false,"id":673828,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Navarrete, L","contributorId":184234,"corporation":false,"usgs":false,"family":"Navarrete","given":"L","email":"","affiliations":[],"preferred":false,"id":673829,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ruppel, Carolyn D. 0000-0003-2284-6632 cruppel@usgs.gov","orcid":"https://orcid.org/0000-0003-2284-6632","contributorId":145770,"corporation":false,"usgs":true,"family":"Ruppel","given":"Carolyn D.","email":"cruppel@usgs.gov","affiliations":[{"id":678,"text":"Woods Hole Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":false,"id":673827,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Weber, T.C.","contributorId":184235,"corporation":false,"usgs":false,"family":"Weber","given":"T.C.","email":"","affiliations":[],"preferred":false,"id":673830,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Leonte, M.","contributorId":184236,"corporation":false,"usgs":false,"family":"Leonte","given":"M.","affiliations":[],"preferred":false,"id":673831,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kellermann, M.","contributorId":184237,"corporation":false,"usgs":false,"family":"Kellermann","given":"M.","email":"","affiliations":[],"preferred":false,"id":673832,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Arrington, E.","contributorId":184238,"corporation":false,"usgs":false,"family":"Arrington","given":"E.","email":"","affiliations":[],"preferred":false,"id":673833,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Valentine, D.L.","contributorId":184239,"corporation":false,"usgs":false,"family":"Valentine","given":"D.L.","email":"","affiliations":[],"preferred":false,"id":673834,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Scranton, M.L","contributorId":184240,"corporation":false,"usgs":false,"family":"Scranton","given":"M.L","email":"","affiliations":[],"preferred":false,"id":673835,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Kessler, John D. 0000-0003-1097-6800","orcid":"https://orcid.org/0000-0003-1097-6800","contributorId":184241,"corporation":false,"usgs":false,"family":"Kessler","given":"John","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":673836,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70185037,"text":"70185037 - 2016 - Integrating seasonal information on nutrients and benthic algal biomass into stream water quality monitoring","interactions":[],"lastModifiedDate":"2017-03-13T16:40:31","indexId":"70185037","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2529,"text":"Journal of the American Water Resources Association","active":true,"publicationSubtype":{"id":10}},"title":"Integrating seasonal information on nutrients and benthic algal biomass into stream water quality monitoring","docAbstract":"<p><span>Benthic chlorophyll </span><i>a</i><span> (BChl </span><i>a</i><span>) and environmental factors that influence algal biomass were measured monthly from February through October in 22 streams from three agricultural regions of the United States. At-site maximum BChl </span><i>a</i><span> ranged from 14 to 406&nbsp;mg/m</span><sup>2</sup><span> and generally varied with dissolved inorganic nitrogen (DIN): 8 out of 9 sites with at-site median DIN &gt;0.5&nbsp;mg/L had maximum BChl </span><i>a</i><span> &gt;100&nbsp;mg/m</span><sup>2</sup><span>. BChl </span><i>a</i><span>accrued and persisted at levels within 50% of at-site maximum for only one to three months. No dominant seasonal pattern for algal biomass accrual was observed in any region. A linear model with DIN, water surface gradient, and velocity accounted for most of the cross-site variation in maximum chlorophyll </span><i>a</i><span>(adjusted </span><i>R</i><sup>2</sup><span>&nbsp;=&nbsp;0.7), but was no better than a single value of DIN&nbsp;=&nbsp;0.5&nbsp;mg/L for distinguishing between low and high-biomass sites. Studies of nutrient enrichment require multiple samples to estimate algal biomass with sufficient precision given the magnitude of temporal variability of algal biomass. An effective strategy for regional stream assessment of nutrient enrichment could be based on a relation between maximum BChl </span><i>a</i><span> and DIN based on repeat sampling at sites selected to represent a gradient in nutrients and application of the relation to a larger number of sites with synoptic nutrient information.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/1752-1688.12451","usgsCitation":"Konrad, C.P., and Munn, M.D., 2016, Integrating seasonal information on nutrients and benthic algal biomass into stream water quality monitoring: Journal of the American Water Resources Association, v. 52, no. 5, p. 1223-1237, https://doi.org/10.1111/1752-1688.12451.","productDescription":"15 p.","startPage":"1223","endPage":"1237","ipdsId":"IP-072819","costCenters":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"links":[{"id":470532,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/1752-1688.12451","text":"Publisher Index Page"},{"id":337474,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"52","issue":"5","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-22","publicationStatus":"PW","scienceBaseUri":"58c7afa0e4b0849ce9795e9a","contributors":{"authors":[{"text":"Konrad, Christopher P. 0000-0002-7354-547X cpkonrad@usgs.gov","orcid":"https://orcid.org/0000-0002-7354-547X","contributorId":1716,"corporation":false,"usgs":true,"family":"Konrad","given":"Christopher","email":"cpkonrad@usgs.gov","middleInitial":"P.","affiliations":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"preferred":true,"id":684031,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Munn, Mark D. 0000-0002-7154-7252 mdmunn@usgs.gov","orcid":"https://orcid.org/0000-0002-7154-7252","contributorId":976,"corporation":false,"usgs":true,"family":"Munn","given":"Mark","email":"mdmunn@usgs.gov","middleInitial":"D.","affiliations":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"preferred":true,"id":684032,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70182777,"text":"70182777 - 2016 - Inferring invasive species abundance using removal data from management actions","interactions":[],"lastModifiedDate":"2017-03-01T12:32:34","indexId":"70182777","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1450,"text":"Ecological Applications","active":true,"publicationSubtype":{"id":10}},"title":"Inferring invasive species abundance using removal data from management actions","docAbstract":"<p><span>Evaluation of the progress of management programs for invasive species is crucial for demonstrating impacts to stakeholders and strategic planning of resource allocation. Estimates of abundance before and after management activities can serve as a useful metric of population management programs. However, many methods of estimating population size are too labor intensive and costly to implement, posing restrictive levels of burden on operational programs. Removal models are a reliable method for estimating abundance before and after management using data from the removal activities exclusively, thus requiring no work in addition to management. We developed a Bayesian hierarchical model to estimate abundance from removal data accounting for varying levels of effort, and used simulations to assess the conditions under which reliable population estimates are obtained. We applied this model to estimate site-specific abundance of an invasive species, feral swine (</span><i>Sus scrofa</i><span>), using removal data from aerial gunning in 59 site/time-frame combinations (480–19,600 acres) throughout Oklahoma and Texas, USA. Simulations showed that abundance estimates were generally accurate when effective removal rates (removal rate accounting for total effort) were above 0.40. However, when abundances were small (&lt;50) the effective removal rate needed to accurately estimates abundances was considerably higher (0.70). Based on our post-validation method, 78% of our site/time frame estimates were accurate. To use this modeling framework it is important to have multiple removals (more than three) within a time frame during which demographic changes are minimized (i.e., a closed population; ≤3&nbsp;months for feral swine). Our results show that the probability of accurately estimating abundance from this model improves with increased sampling effort (8+ flight hours across the 3-month window is best) and increased removal rate. Based on the inverse relationship between inaccurate abundances and inaccurate removal rates, we suggest auxiliary information that could be collected and included in the model as covariates (e.g., habitat effects, differences between pilots) to improve accuracy of removal rates and hence abundance estimates.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/eap.1383","usgsCitation":"Davis, A.J., Hooten, M., Miller, R.S., Farnsworth, M.L., Lewis, J., Moxcey, M., and Pepin, K., 2016, Inferring invasive species abundance using removal data from management actions: Ecological Applications, v. 26, no. 7, p. 2339-2346, https://doi.org/10.1002/eap.1383.","productDescription":"8 p.","startPage":"2339","endPage":"2346","ipdsId":"IP-067270","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":336748,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"26","issue":"7","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-09-19","publicationStatus":"PW","scienceBaseUri":"58b7eba6e4b01ccd5500bb01","contributors":{"authors":[{"text":"Davis, Amy J.","contributorId":149854,"corporation":false,"usgs":false,"family":"Davis","given":"Amy","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":680416,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hooten, Mevin 0000-0002-1614-723X mhooten@usgs.gov","orcid":"https://orcid.org/0000-0002-1614-723X","contributorId":2958,"corporation":false,"usgs":true,"family":"Hooten","given":"Mevin","email":"mhooten@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":12963,"text":"Colorado Cooperative Fish and Wildlife Research Unit, Fort Collins, CO","active":true,"usgs":false}],"preferred":true,"id":673716,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Miller, Ryan S.","contributorId":49005,"corporation":false,"usgs":false,"family":"Miller","given":"Ryan","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":680417,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Farnsworth, Matthew L.","contributorId":56473,"corporation":false,"usgs":false,"family":"Farnsworth","given":"Matthew","email":"","middleInitial":"L.","affiliations":[{"id":12434,"text":"USDA, Wildlife Services, National Wildlife Research Center","active":true,"usgs":false}],"preferred":false,"id":680418,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lewis, Jesse S.","contributorId":147540,"corporation":false,"usgs":false,"family":"Lewis","given":"Jesse S.","affiliations":[{"id":12556,"text":"Florida Fish and Wildlife Conservation Commission","active":true,"usgs":false}],"preferred":false,"id":680419,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Moxcey, Michael","contributorId":187442,"corporation":false,"usgs":false,"family":"Moxcey","given":"Michael","email":"","affiliations":[],"preferred":false,"id":680420,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Pepin, Kim M. 0000-0002-9931-8312","orcid":"https://orcid.org/0000-0002-9931-8312","contributorId":187441,"corporation":false,"usgs":false,"family":"Pepin","given":"Kim M.","affiliations":[],"preferred":false,"id":680421,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70182773,"text":"70182773 - 2016 - The timing of compositionally-zoned magma reservoirs and mafic 'priming' weeks before the 1912 Novarupta-Katmai rhyolite eruption","interactions":[],"lastModifiedDate":"2017-03-01T14:43:11","indexId":"70182773","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1427,"text":"Earth and Planetary Science Letters","active":true,"publicationSubtype":{"id":10}},"title":"The timing of compositionally-zoned magma reservoirs and mafic 'priming' weeks before the 1912 Novarupta-Katmai rhyolite eruption","docAbstract":"The June 6, 1912 eruption of more than 13 km3 of dense rock equivalent (DRE) magma at Novarupta vent, Alaska was the largest of the 20th century. It ejected >7 km3 of rhyolite, ~1.3 km3 of andesite and ~4.6 km3 of dacite. Early ideas about the origin of pyroclastic flows and magmatic differentiation (e.g., compositional zonation of reservoirs) were shaped by this eruption. Despite being well studied, the timing of events that led to the chemically and mineralogically zoned magma reservoir remain poorly known. Here we provide new insights using the textures and chemical compositions of plagioclase and orthopyroxene crystals and by reevaluating previous U-Th isotope data. Compositional zoning of the magma reservoir likely developed a few thousand years before the eruption by several additions of mafic magma below an extant silicic reservoir. Melt compositions calculated from Sr contents in plagioclase fill the compositional gap between 68 and 76% SiO2 in whole pumice clasts, consistent with uninterrupted crystal growth from a continuum of liquids. Thus, our findings support a general model in which large volumes of crystal-poor rhyolite are related to intermediate magmas through gradual separation of melt from crystal-rich mush. The rhyolite is incubated by, but not mixed with, episodic recharge pulses of mafic magma that interact thermochemically with the mush and intermediate magmas. Hot, Mg-, Ca-, and Al-rich mafic magma intruded into, and mixed with, deeper parts of the reservoir (andesite and dacite) multiple times. Modeling the relaxation of the Fe-Mg concentrations in orthopyroxene and Mg in plagioclase rims indicates that the final recharge event occurred just weeks prior to the eruption. Rapid addition of mass, volatiles, and heat from the recharge magma, perhaps aided by partial melting of cumulate mush below the andesite and dacite, pressurized the reservoir and likely propelled a ~10 km lateral dike that allowed the overlying rhyolite to reach the surface.","language":"English","publisher":"Elsevier","doi":"10.1016/j.epsl.2016.07.015","usgsCitation":"Singer, B.S., Costa, F., Herrin, J.S., Hildreth, W., and Fierstein, J., 2016, The timing of compositionally-zoned magma reservoirs and mafic 'priming' weeks before the 1912 Novarupta-Katmai rhyolite eruption: Earth and Planetary Science Letters, v. 451, p. 125-137, https://doi.org/10.1016/j.epsl.2016.07.015.","productDescription":"13 p. ","startPage":"125","endPage":"137","ipdsId":"IP-078234","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":470525,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.epsl.2016.07.015","text":"Publisher Index Page"},{"id":336778,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"451","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58b7eba6e4b01ccd5500bb03","contributors":{"authors":[{"text":"Singer, Brad S.","contributorId":184168,"corporation":false,"usgs":false,"family":"Singer","given":"Brad","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":673703,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Costa, Fidel","contributorId":184169,"corporation":false,"usgs":false,"family":"Costa","given":"Fidel","email":"","affiliations":[],"preferred":false,"id":673704,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Herrin, Jason S.","contributorId":184170,"corporation":false,"usgs":false,"family":"Herrin","given":"Jason","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":673705,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hildreth, Wes 0000-0002-7925-4251 hildreth@usgs.gov","orcid":"https://orcid.org/0000-0002-7925-4251","contributorId":2221,"corporation":false,"usgs":true,"family":"Hildreth","given":"Wes","email":"hildreth@usgs.gov","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":680460,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Fierstein, Judith 0000-0001-8024-1426 jfierstn@usgs.gov","orcid":"https://orcid.org/0000-0001-8024-1426","contributorId":147000,"corporation":false,"usgs":true,"family":"Fierstein","given":"Judith","email":"jfierstn@usgs.gov","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":673707,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70185034,"text":"70185034 - 2016 - Controls on selenium distribution and mobilization in an irrigated shallow groundwater system underlain by Mancos Shale, Uncompahgre River Basin, Colorado, USA","interactions":[],"lastModifiedDate":"2017-03-15T11:16:36","indexId":"70185034","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3352,"text":"Science of the Total Environment","active":true,"publicationSubtype":{"id":10}},"title":"Controls on selenium distribution and mobilization in an irrigated shallow groundwater system underlain by Mancos Shale, Uncompahgre River Basin, Colorado, USA","docAbstract":"<p><span>Elevated selenium (Se) concentrations in surface water and groundwater have become a concern in areas of the Western United States due to the deleterious effects of Se on aquatic ecosystems. Elevated Se concentrations are most prevalent in irrigated alluvial valleys underlain by Se-bearing marine shales where Se can be leached from geologic materials into the shallow groundwater and surface water systems. This study presents groundwater chemistry and solid-phase geochemical data from the Uncompahgre River Basin in Western Colorado, an irrigated alluvial landscape underlain by Se-rich Cretaceous marine shale. We analyzed Se species, major and trace elements, and stable nitrogen and oxygen isotopes of nitrate in groundwater and aquifer sediments to examine processes governing selenium release and transport in the shallow groundwater system. Groundwater Se concentrations ranged from below detection limit (&lt;&nbsp;0.5&nbsp;μg&nbsp;L</span><sup>−&nbsp;1</sup><span>) to 4070&nbsp;μg&nbsp;L</span><sup>−&nbsp;1</sup><span>, and primarily are controlled by high groundwater nitrate concentrations that maintain oxidizing conditions in the aquifer despite low dissolved oxygen concentrations. High nitrate concentrations in non-irrigated soils and nitrate isotopes indicate nitrate is largely derived from natural sources in the Mancos Shale and alluvial material. Thus, in contrast to areas that receive substantial NO</span><sub>3</sub><span> inputs through inorganic fertilizer application, Se mitigation efforts that involve limiting NO</span><sub>3</sub><span> application might have little impact on groundwater Se concentrations in the study area. Soluble salts are the primary source of Se to the groundwater system in the study area at-present, but they constitute a small percentage of the total Se content of core material. Sequential extraction results indicate insoluble Se is likely composed of reduced Se in recalcitrant organic matter or discrete selenide phases. Oxidation of reduced Se species that constitute the majority of the Se pool in the study area could be a potential source of Se in the future as soluble salts are progressively depleted.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.scitotenv.2016.06.063","usgsCitation":"Mills, T.J., Mast, M.A., Thomas, J.C., and Keith, G.L., 2016, Controls on selenium distribution and mobilization in an irrigated shallow groundwater system underlain by Mancos Shale, Uncompahgre River Basin, Colorado, USA: Science of the Total Environment, v. 566-567, p. 1621-1631, https://doi.org/10.1016/j.scitotenv.2016.06.063.","productDescription":"11 p.","startPage":"1621","endPage":"1631","ipdsId":"IP-072320","costCenters":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"links":[{"id":337598,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Colorado","otherGeospatial":"Uncompahgre River Basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -108.17550659179688,\n              38.41378642476067\n            ],\n            [\n              -107.78961181640625,\n              38.41378642476067\n            ],\n            [\n              -107.78961181640625,\n              38.79476766282312\n            ],\n            [\n              -108.17550659179688,\n              38.79476766282312\n            ],\n            [\n              -108.17550659179688,\n              38.41378642476067\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"566-567","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58ca52cee4b0849ce97c86aa","contributors":{"authors":[{"text":"Mills, Taylor J. 0000-0001-7252-0521 tmills@usgs.gov","orcid":"https://orcid.org/0000-0001-7252-0521","contributorId":4658,"corporation":false,"usgs":true,"family":"Mills","given":"Taylor","email":"tmills@usgs.gov","middleInitial":"J.","affiliations":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"preferred":true,"id":684023,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mast, M. Alisa 0000-0001-6253-8162 mamast@usgs.gov","orcid":"https://orcid.org/0000-0001-6253-8162","contributorId":827,"corporation":false,"usgs":true,"family":"Mast","given":"M.","email":"mamast@usgs.gov","middleInitial":"Alisa","affiliations":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"preferred":true,"id":684024,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Thomas, Judith C. 0000-0001-7883-1419 juthomas@usgs.gov","orcid":"https://orcid.org/0000-0001-7883-1419","contributorId":1468,"corporation":false,"usgs":true,"family":"Thomas","given":"Judith","email":"juthomas@usgs.gov","middleInitial":"C.","affiliations":[{"id":36532,"text":"Central Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":684025,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Keith, Gabrielle L. gkeith@usgs.gov","contributorId":5247,"corporation":false,"usgs":true,"family":"Keith","given":"Gabrielle","email":"gkeith@usgs.gov","middleInitial":"L.","affiliations":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"preferred":true,"id":684026,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70187250,"text":"70187250 - 2016 - Long-term deer exclusion has complex effects on a suburban forest understory","interactions":[],"lastModifiedDate":"2017-04-28T11:38:30","indexId":"70187250","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3297,"text":"Rhodora","active":true,"publicationSubtype":{"id":10}},"title":"Long-term deer exclusion has complex effects on a suburban forest understory","docAbstract":"<p><span>Herbivory by deer is one of the leading biotic disturbances on forest understories (i.e., herbs, small shrubs, and small tree seedlings). A large body of research has reported declines in height, abundance, and reproductive capacity of forbs and woody plants coupled with increases in abundance of graminoids, ferns, and exotic species due to deer herbivory. Less clear is the extent to which (and the direction in which) deer alter herbaceous layer diversity, where much of the plant diversity in a forest occurs. We examined the effect of 15 y of deer exclusion on the understory of a suburban hardwood forest in Connecticut exposed to decades of intensive herbivory by white-tailed deer (</span><i><i>Odocoileus virginianus</i></i><span>). We compared species richness (at subplot and plot scale), individual species and life form group abundance (% cover), and community composition between grazed and exclosure plots, as well as between mesic and wet soil blocks. Forb cover was more than twice as abundant in exclosure as in grazed plots, whereas sedge (</span><i><i>Carex</i></i><span> spp.) cover was 28 times more abundant, and exotic species cover generally higher in grazed than in exclosure plots. Native and exotic species richness were both higher in grazed than exclosure plots at the subplot scale, and native herbaceous richness was higher in grazed plots at both spatial scales. In contrast, native shrub richness increased with deer exclusion at the plot scale. Our results suggest that deer exclusion had contrasting effects on species richness, depending on plant life form, but that overall richness of both exotic and native plants declined with deer exclusion. In addition, site heterogeneity remained an important driver of vegetation dynamics even in the midst of high deer densities.</span></p>","language":"English","publisher":"The New England Botanical Club, Inc.","doi":"10.3119/15-35","usgsCitation":"Faison, E.K., Foster, D., and DeStefano, S., 2016, Long-term deer exclusion has complex effects on a suburban forest understory: Rhodora, v. 118, no. 976, p. 382-402, https://doi.org/10.3119/15-35.","productDescription":"21 p.","startPage":"382","endPage":"402","ipdsId":"IP-072271","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":340605,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"118","issue":"976","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"590454a3e4b022cee40dc22e","contributors":{"authors":[{"text":"Faison, Edward K.","contributorId":191559,"corporation":false,"usgs":false,"family":"Faison","given":"Edward","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":693468,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Foster, David R.","contributorId":149881,"corporation":false,"usgs":false,"family":"Foster","given":"David R.","affiliations":[{"id":16810,"text":"Harvard Univ.","active":true,"usgs":false}],"preferred":false,"id":693469,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"DeStefano, Stephen 0000-0003-2472-8373 destef@usgs.gov","orcid":"https://orcid.org/0000-0003-2472-8373","contributorId":166706,"corporation":false,"usgs":true,"family":"DeStefano","given":"Stephen","email":"destef@usgs.gov","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":false,"id":693108,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70185023,"text":"70185023 - 2016 - Circumpolar distribution and carbon storage of thermokarst landscapes","interactions":[],"lastModifiedDate":"2017-03-14T13:44:37","indexId":"70185023","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2842,"text":"Nature Communications","active":true,"publicationSubtype":{"id":10}},"title":"Circumpolar distribution and carbon storage of thermokarst landscapes","docAbstract":"<p><span>Thermokarst is the process whereby the thawing of ice-rich permafrost ground causes land subsidence, resulting in development of distinctive landforms. Accelerated thermokarst due to climate change will damage infrastructure, but also impact hydrology, ecology and biogeochemistry. Here, we present a circumpolar assessment of the distribution of thermokarst landscapes, defined as landscapes comprised of current thermokarst landforms and areas susceptible to future thermokarst development. At 3.6 × 10</span><sup>6</sup><span> km</span><sup>2</sup><span>, thermokarst landscapes are estimated to cover </span><span class=\"stix\">∼</span><span>20% of the northern permafrost region, with approximately equal contributions from three landscape types where characteristic wetland, lake and hillslope thermokarst landforms occur. We estimate that approximately half of the below-ground organic carbon within the study region is stored in thermokarst landscapes. Our results highlight the importance of explicitly considering thermokarst when assessing impacts of climate change, including future landscape greenhouse gas emissions, and provide a means for assessing such impacts at the circumpolar scale.</span></p>","language":"English","publisher":"Nature","doi":"10.1038/ncomms13043","usgsCitation":"Olefeldt, D., Goswami, S., Grosse, G., Hayes, D., Hugelius, G., Kuhry, P., McGuire, A.D., Romanovsky, V., Sannel, A.B., Schuur, E., and Turetsky, M., 2016, Circumpolar distribution and carbon storage of thermokarst landscapes: Nature Communications, v. 7, p. 1-11, https://doi.org/10.1038/ncomms13043.","productDescription":"Article number 13043; 11 p.","startPage":"1","endPage":"11","ipdsId":"IP-069482","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":470527,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1038/ncomms13043","text":"Publisher Index Page"},{"id":337514,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"7","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-11","publicationStatus":"PW","scienceBaseUri":"58c90125e4b0849ce97abcd3","contributors":{"authors":[{"text":"Olefeldt, David","contributorId":169408,"corporation":false,"usgs":false,"family":"Olefeldt","given":"David","affiliations":[{"id":32365,"text":"Department of Renewable Resources, University of Alberta","active":true,"usgs":false}],"preferred":false,"id":684239,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Goswami, S.","contributorId":189252,"corporation":false,"usgs":false,"family":"Goswami","given":"S.","email":"","affiliations":[],"preferred":false,"id":684240,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Grosse, G.","contributorId":82140,"corporation":false,"usgs":true,"family":"Grosse","given":"G.","affiliations":[],"preferred":false,"id":684241,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hayes, D.","contributorId":15275,"corporation":false,"usgs":true,"family":"Hayes","given":"D.","email":"","affiliations":[],"preferred":false,"id":684242,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hugelius, G.","contributorId":27338,"corporation":false,"usgs":true,"family":"Hugelius","given":"G.","affiliations":[],"preferred":false,"id":684243,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kuhry, P.","contributorId":57277,"corporation":false,"usgs":false,"family":"Kuhry","given":"P.","affiliations":[],"preferred":false,"id":684244,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"McGuire, A. David 0000-0003-4646-0750 ffadm@usgs.gov","orcid":"https://orcid.org/0000-0003-4646-0750","contributorId":166708,"corporation":false,"usgs":true,"family":"McGuire","given":"A.","email":"ffadm@usgs.gov","middleInitial":"David","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":false,"id":683987,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Romanovsky, V.E.","contributorId":54721,"corporation":false,"usgs":true,"family":"Romanovsky","given":"V.E.","email":"","affiliations":[],"preferred":false,"id":684245,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Sannel, A. B. K.","contributorId":38450,"corporation":false,"usgs":false,"family":"Sannel","given":"A.","email":"","middleInitial":"B. K.","affiliations":[],"preferred":false,"id":684246,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Schuur, E.A.G.","contributorId":106679,"corporation":false,"usgs":true,"family":"Schuur","given":"E.A.G.","affiliations":[],"preferred":false,"id":684247,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Turetsky, M.R.","contributorId":107470,"corporation":false,"usgs":true,"family":"Turetsky","given":"M.R.","email":"","affiliations":[],"preferred":false,"id":684248,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70185021,"text":"70185021 - 2016 - Validation of a side-scan sonar method for quantifying walleye spawning habitat availability in the littoral zone of northern Wisconsin Lakes","interactions":[],"lastModifiedDate":"2017-03-14T14:28:24","indexId":"70185021","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2886,"text":"North American Journal of Fisheries Management","active":true,"publicationSubtype":{"id":10}},"title":"Validation of a side-scan sonar method for quantifying walleye spawning habitat availability in the littoral zone of northern Wisconsin Lakes","docAbstract":"<p><span>Previous research has generally ignored the potential effects of spawning habitat availability and quality on recruitment of Walleye </span><i>Sander vitreus</i><span>, largely because information on spawning habitat is lacking for many lakes. Furthermore, traditional transect-based methods used to describe habitat are time and labor intensive. Our objectives were to determine if side-scan sonar could be used to accurately classify Walleye spawning habitat in the nearshore littoral zone and provide lakewide estimates of spawning habitat availability similar to estimates obtained from a transect–quadrat-based method. Based on assessments completed on 16 northern Wisconsin lakes, interpretation of side-scan sonar images resulted in correct identification of substrate size-class for 93% (177 of 191) of selected locations and all incorrect classifications were within ± 1 class of the correct substrate size-class. Gravel, cobble, and rubble substrates were incorrectly identified from side-scan images in only two instances (1% misclassification), suggesting that side-scan sonar can be used to accurately identify preferred Walleye spawning substrates. Additionally, we detected no significant differences in estimates of lakewide littoral zone substrate compositions estimated using side-scan sonar and a traditional transect–quadrat-based method. Our results indicate that side-scan sonar offers a practical, accurate, and efficient technique for assessing substrate composition and quantifying potential Walleye spawning habitat in the nearshore littoral zone of north temperate lakes.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/02755947.2016.1173141","usgsCitation":"Richter, J.T., Sloss, B.L., and Isermann, D.A., 2016, Validation of a side-scan sonar method for quantifying walleye spawning habitat availability in the littoral zone of northern Wisconsin Lakes: North American Journal of Fisheries Management, v. 36, no. 4, p. 942-950, https://doi.org/10.1080/02755947.2016.1173141.","productDescription":"9 p.","startPage":"942","endPage":"950","ipdsId":"IP-068949","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":337516,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wisconsin","volume":"36","issue":"4","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2016-07-20","publicationStatus":"PW","scienceBaseUri":"58c90125e4b0849ce97abcd5","contributors":{"authors":[{"text":"Richter, Jacob T.","contributorId":189253,"corporation":false,"usgs":false,"family":"Richter","given":"Jacob","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":684249,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Sloss, Brian L. bsloss@usgs.gov","contributorId":702,"corporation":false,"usgs":true,"family":"Sloss","given":"Brian","email":"bsloss@usgs.gov","middleInitial":"L.","affiliations":[],"preferred":true,"id":684250,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Isermann, Daniel A. 0000-0003-1151-9097 disermann@usgs.gov","orcid":"https://orcid.org/0000-0003-1151-9097","contributorId":5167,"corporation":false,"usgs":true,"family":"Isermann","given":"Daniel","email":"disermann@usgs.gov","middleInitial":"A.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":683982,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70187241,"text":"70187241 - 2016 - Development of habitat suitability indices for the Candy Darter, with cross-scale validation across representative populations","interactions":[],"lastModifiedDate":"2017-04-28T14:00:09","indexId":"70187241","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3624,"text":"Transactions of the American Fisheries Society","active":true,"publicationSubtype":{"id":10}},"title":"Development of habitat suitability indices for the Candy Darter, with cross-scale validation across representative populations","docAbstract":"<p><span>Understanding relationships between habitat associations for individuals and habitat factors that limit populations is a primary challenge for managers of stream fishes. Although habitat use by individuals can provide insight into the adaptive significance of selected microhabitats, not all habitat parameters will be significant at the population level, particularly when distributional patterns partially result from habitat degradation. We used underwater observation to quantify microhabitat selection by an imperiled stream fish, the Candy Darter </span><i>Etheostoma osburni</i><span>, in two streams with robust populations. We developed multiple-variable and multiple-life-stage habitat suitability indices (HSIs) from microhabitat selection patterns and used them to assess the suitability of available habitat in streams where Candy Darter populations were extirpated, localized, or robust. Next, we used a comparative framework to examine relationships among (1) habitat availability across streams, (2) projected habitat suitability of each stream, and (3) a rank for the likely long-term viability (robustness) of the population inhabiting each stream. Habitat selection was characterized by ontogenetic shifts from the low-velocity, slightly embedded areas used by age-0 Candy Darters to the swift, shallow areas with little fine sediment and complex substrate, which were used by adults. Overall, HSIs were strongly correlated with population rank. However, we observed weak or inverse relationships between predicted individual habitat suitability and population robustness for multiple life stages and variables. The results demonstrated that microhabitat selection by individuals does not always reflect population robustness, particularly when based on a single life stage or season, which highlights the risk of generalizing habitat selection that is observed during nonstressful periods or for noncritical resources. These findings suggest that stream fish managers may need to be cautious when implementing conservation measures based solely on observations of habitat selection by individuals and that detailed study at the individual and population levels may be necessary to identify habitat that limits populations.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/00028487.2016.1217929","usgsCitation":"Dunn, C.G., and Angermeier, P.L., 2016, Development of habitat suitability indices for the Candy Darter, with cross-scale validation across representative populations: Transactions of the American Fisheries Society, v. 145, no. 6, p. 1266-1281, https://doi.org/10.1080/00028487.2016.1217929.","productDescription":"16 p.","startPage":"1266","endPage":"1281","ipdsId":"IP-075181","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":470544,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://figshare.com/articles/journal_contribution/Development_of_Habitat_Suitability_Indices_for_the_Candy_Darter_with_Cross-Scale_Validation_across_Representative_Populations/4001256","text":"External Repository"},{"id":340627,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"145","issue":"6","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-07","publicationStatus":"PW","scienceBaseUri":"590454a3e4b022cee40dc230","contributors":{"authors":[{"text":"Dunn, Corey G.","contributorId":191569,"corporation":false,"usgs":false,"family":"Dunn","given":"Corey","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":693502,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Angermeier, Paul L. 0000-0003-2864-170X biota@usgs.gov","orcid":"https://orcid.org/0000-0003-2864-170X","contributorId":166679,"corporation":false,"usgs":true,"family":"Angermeier","given":"Paul","email":"biota@usgs.gov","middleInitial":"L.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":693093,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70184965,"text":"70184965 - 2016 - Late Oligocene to present contractional structure in and around the Susitna basin, Alaska—Geophysical evidence and geological implications","interactions":[],"lastModifiedDate":"2018-06-19T19:20:30","indexId":"70184965","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1820,"text":"Geosphere","active":true,"publicationSubtype":{"id":10}},"title":"Late Oligocene to present contractional structure in and around the Susitna basin, Alaska—Geophysical evidence and geological implications","docAbstract":"<p><span>The Cenozoic Susitna basin lies within an enigmatic lowland surrounded by the Central Alaska Range, Western Alaska Range (including the Tordrillo Mountains), and Talkeetna Mountains in south-central Alaska. Some previous interpretations show normal faults as the defining structures of the basin (e.g., Kirschner, 1994). However, analysis of new and existing geophysical data shows predominantly (Late Oligocene to present) thrust and reverse fault geometries in the region, as previously proposed by Hackett (1978). A key example is the Beluga Mountain fault where a 50-mGal gravity gradient, caused by the density transition from the igneous bedrock of Beluga Mountain to the &gt;4-km-thick Cenozoic sedimentary section of Susitna basin, spans a horizontal distance of ∼40 km and straddles the topographic front. The location and shape of the gravity gradient preclude a normal fault geometry; instead, it is best explained by a southwest-dipping thrust fault, with its leading edge located several kilometers to the northeast of the mountain front, concealed beneath the shallow glacial and fluvial cover deposits. Similar contractional fault relationships are observed for other basin-bounding and regional faults as well. Contractional structures are consistent with a regional shortening strain field inferred from differential offsets on the Denali and Castle Mountain right-lateral strike-slip fault systems.</span></p>","language":"English","publisher":"Geological Society of America","doi":"10.1130/GES01279.1","usgsCitation":"Saltus, R.W., Stanley, R.G., Haeussler, P.J., Jones, J.V., Potter, C.J., and Lewis, K.A., 2016, Late Oligocene to present contractional structure in and around the Susitna basin, Alaska—Geophysical evidence and geological implications: Geosphere, v. 12, no. 5, p. 1378-1390, https://doi.org/10.1130/GES01279.1.","productDescription":"13 p.","startPage":"1378","endPage":"1390","ipdsId":"IP-078088","costCenters":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"links":[{"id":470536,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1130/ges01279.1","text":"Publisher Index Page"},{"id":337619,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -153,\n              61\n            ],\n            [\n              -147,\n              61\n            ],\n            [\n              -147,\n              63\n            ],\n            [\n              -153,\n              63\n            ],\n            [\n              -153,\n              61\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"12","issue":"5","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-11","publicationStatus":"PW","scienceBaseUri":"58ca52cee4b0849ce97c86ae","contributors":{"authors":[{"text":"Saltus, Richard W. saltus@usgs.gov","contributorId":777,"corporation":false,"usgs":true,"family":"Saltus","given":"Richard","email":"saltus@usgs.gov","middleInitial":"W.","affiliations":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":683725,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Stanley, Richard G. 0000-0001-6192-8783 rstanley@usgs.gov","orcid":"https://orcid.org/0000-0001-6192-8783","contributorId":1832,"corporation":false,"usgs":true,"family":"Stanley","given":"Richard","email":"rstanley@usgs.gov","middleInitial":"G.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":683726,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Haeussler, Peter J. 0000-0002-1503-6247 pheuslr@usgs.gov","orcid":"https://orcid.org/0000-0002-1503-6247","contributorId":503,"corporation":false,"usgs":true,"family":"Haeussler","given":"Peter","email":"pheuslr@usgs.gov","middleInitial":"J.","affiliations":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":683727,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Jones, James V. III 0000-0002-6602-5935 jvjones@usgs.gov","orcid":"https://orcid.org/0000-0002-6602-5935","contributorId":201245,"corporation":false,"usgs":true,"family":"Jones","given":"James","suffix":"III","email":"jvjones@usgs.gov","middleInitial":"V.","affiliations":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":683728,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Potter, Christopher J. 0000-0002-2300-6670 cpotter@usgs.gov","orcid":"https://orcid.org/0000-0002-2300-6670","contributorId":1026,"corporation":false,"usgs":true,"family":"Potter","given":"Christopher","email":"cpotter@usgs.gov","middleInitial":"J.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":683729,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Lewis, Kristen A. 0000-0003-4991-3399 klewis@usgs.gov","orcid":"https://orcid.org/0000-0003-4991-3399","contributorId":4120,"corporation":false,"usgs":true,"family":"Lewis","given":"Kristen","email":"klewis@usgs.gov","middleInitial":"A.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":683730,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70178391,"text":"70178391 - 2016 - Negative impacts of invasive plants on conservation of sensitive desert wildlife","interactions":[],"lastModifiedDate":"2016-11-16T09:52:46","indexId":"70178391","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Negative impacts of invasive plants on conservation of sensitive desert wildlife","docAbstract":"<p><span>Habitat disturbance from development, resource extraction, off-road vehicle use, and energy development ranks highly among threats to desert systems worldwide. In the Mojave Desert, United States, these disturbances have promoted the establishment of nonnative plants, so that native grasses and forbs are now intermixed with, or have been replaced by invasive, nonnative Mediterranean grasses. This shift in plant composition has altered food availability for Mojave Desert tortoises (</span><i>Gopherus agassizii</i><span>), a federally listed species. We hypothesized that this change in forage would negatively influence the physiological ecology, immune competence, and health of neonatal and yearling tortoises. To test this, we monitored the effects of diet on growth, body condition, immunological responses (measured by gene transcription), and survival for 100 captive Mojave tortoises. Tortoises were assigned to one of five diets: native forbs, native grass, invasive grass, and native forbs combined with either the native or invasive grass. Tortoises eating native forbs had better body condition and immune functions, grew more, and had higher survival rates (&gt;95%) than tortoises consuming any other diet. At the end of the experiment, 32% of individuals fed only native grass and 37% fed only invasive grass were found dead or removed from the experiment due to poor body conditions. In contrast, all tortoises fed either the native forb or combined native forb and native grass diets survived and were in good condition. Health and body condition quickly declined for tortoises fed only the native grass (</span><i>Festuca octoflora</i><span>) or invasive grass (</span><i>Bromus rubens</i><span>) with notable loss of fat and muscle mass and increased muscular atrophy. </span><i>Bromus rubens</i><span> seeds were found embedded in the oral mucosa and tongue in most individuals eating that diet, which led to mucosal inflammation. Genes indicative of physiological, immune, and metabolic functions were transcribed at lower levels for individuals fed </span><i>B.&nbsp;rubens</i><span>, indicating potential greater susceptibility to disease or other health-related problems. This study highlights the negative indirect effects of invasive grasses, such as red brome, in desert ecosystems, and provides definitive evidence of a larger negative consequence to health, survival, and ultimately population recruitment for Mojave Desert tortoises than previously understood.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.1531","usgsCitation":"Drake, K.K., Bowen, L., Nussear, K.E., Esque, T., Berger, A.J., Custer, N., Waters-Dynes, S.C., Johnson, J.D., Miles, A.K., and Lewison, R., 2016, Negative impacts of invasive plants on conservation of sensitive desert wildlife: Ecosphere, v. 7, no. 10, e01531; 20 p., https://doi.org/10.1002/ecs2.1531.","productDescription":"e01531; 20 p.","ipdsId":"IP-072979","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":470545,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecs2.1531","text":"Publisher Index Page"},{"id":331059,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"7","issue":"10","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-27","publicationStatus":"PW","scienceBaseUri":"582dd8eae4b04d580bd3fa93","contributors":{"authors":[{"text":"Drake, K. Kristina","contributorId":175153,"corporation":false,"usgs":false,"family":"Drake","given":"K.","email":"","middleInitial":"Kristina","affiliations":[],"preferred":false,"id":653919,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bowen, Lizabeth 0000-0001-9115-4336 lbowen@usgs.gov","orcid":"https://orcid.org/0000-0001-9115-4336","contributorId":4539,"corporation":false,"usgs":true,"family":"Bowen","given":"Lizabeth","email":"lbowen@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":653920,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Nussear, Kenneth E. knussear@usgs.gov","contributorId":2695,"corporation":false,"usgs":true,"family":"Nussear","given":"Kenneth","email":"knussear@usgs.gov","middleInitial":"E.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":653921,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Esque, Todd C. tesque@usgs.gov","contributorId":138964,"corporation":false,"usgs":true,"family":"Esque","given":"Todd C.","email":"tesque@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":653922,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Berger, Andrew J.","contributorId":176904,"corporation":false,"usgs":false,"family":"Berger","given":"Andrew","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":653923,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Custer, Nathan ncuster@usgs.gov","contributorId":5561,"corporation":false,"usgs":true,"family":"Custer","given":"Nathan","email":"ncuster@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":653924,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Waters-Dynes, Shannon C. 0000-0002-9707-4684 swaters@usgs.gov","orcid":"https://orcid.org/0000-0002-9707-4684","contributorId":5826,"corporation":false,"usgs":true,"family":"Waters-Dynes","given":"Shannon","email":"swaters@usgs.gov","middleInitial":"C.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":653925,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Johnson, Jay D.","contributorId":176906,"corporation":false,"usgs":false,"family":"Johnson","given":"Jay","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":653926,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Miles, A. Keith 0000-0002-3108-808X keith_miles@usgs.gov","orcid":"https://orcid.org/0000-0002-3108-808X","contributorId":196,"corporation":false,"usgs":true,"family":"Miles","given":"A.","email":"keith_miles@usgs.gov","middleInitial":"Keith","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":653927,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Lewison, Rebecca L.","contributorId":79812,"corporation":false,"usgs":true,"family":"Lewison","given":"Rebecca L.","affiliations":[],"preferred":false,"id":653928,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70191951,"text":"70191951 - 2016 - A Lota lota consumption: Trophic dynamics of nonnative Burbot in a valuable sport fishery","interactions":[],"lastModifiedDate":"2017-10-19T11:25:32","indexId":"70191951","displayToPublicDate":"2016-10-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3624,"text":"Transactions of the American Fisheries Society","active":true,"publicationSubtype":{"id":10}},"title":"A Lota lota consumption: Trophic dynamics of nonnative Burbot in a valuable sport fishery","docAbstract":"<p><span>Unintentional and illegal introductions of species disrupt food webs and threaten the success of managed sport fisheries. Although many populations of Burbot&nbsp;</span><i>Lota lota</i><span><span>&nbsp;</span>are declining in the species’ native range, a nonnative population recently expanded into Flaming Gorge Reservoir (FGR), Wyoming–Utah, and threatens to disrupt predator–prey interactions within this popular sport fishery. To determine potential impacts on sport fishes, especially trophy Lake Trout<span>&nbsp;</span></span><i>Salvelinus namaycush</i><span>, we assessed the relative abundance of Burbot and quantified the potential trophic or food web impacts of this population by using diet, stable isotope, and bioenergetic analyses. We did not detect a significant potential for food resource competition between Burbot and Lake Trout (Schoener’s overlap index = 0.13), but overall consumption by Burbot likely affects other sport fishes, as indicated by our analyses of trophic niche space. Diet analyses suggested that crayfish were important diet items across time (89.3% of prey by weight in autumn; 49.4% in winter) and across Burbot size-classes (small: 77.5% of prey by weight; medium: 76.6%; large: 39.7%). However, overall consumption by Burbot increases as water temperatures cool, and fish consumption by Burbot in FGR was observed to increase during winter. Specifically, large Burbot consumed more salmonids, and we estimated (bioenergetically) that up to 70% of growth occurred in late autumn and winter. Further, our population-wide consumption estimates indicated that Burbot could consume up to double the biomass of Rainbow Trout<span>&nbsp;</span></span><i>Oncorhynchus mykiss</i><span><span>&nbsp;</span>stocked annually (&gt;1.3 × 10</span><sup>5</sup><span><span>&nbsp;</span>kg; &gt;1 million individuals) into FGR. Overall, we provide some of the first information regarding Burbot trophic interactions outside of the species’ native range; these findings can help to inform the management of sport fisheries if Burbot range expansion occurs elsewhere.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/00028487.2016.1227372","usgsCitation":"Klobucar, S., Saunders, W.C., and Budy, P., 2016, A Lota lota consumption: Trophic dynamics of nonnative Burbot in a valuable sport fishery: Transactions of the American Fisheries Society, v. 145, no. 6, p. 1386-1398, https://doi.org/10.1080/00028487.2016.1227372.","productDescription":"13 p.","startPage":"1386","endPage":"1398","ipdsId":"IP-074691","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":346955,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Utah, Wyoming","otherGeospatial":"Flaming Gorge Reservoir","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -109.74517822265624,\n              40.875103022165824\n            ],\n            [\n              -109.35516357421874,\n              40.875103022165824\n            ],\n            [\n              -109.35516357421874,\n              41.52297326747377\n            ],\n            [\n              -109.74517822265624,\n              41.52297326747377\n            ],\n            [\n              -109.74517822265624,\n              40.875103022165824\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"145","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-14","publicationStatus":"PW","scienceBaseUri":"59e9b997e4b05fe04cd65ccf","contributors":{"authors":[{"text":"Klobucar, Stephen L.","contributorId":172291,"corporation":false,"usgs":false,"family":"Klobucar","given":"Stephen L.","affiliations":[],"preferred":false,"id":713937,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Saunders, W. Carl","contributorId":46883,"corporation":false,"usgs":true,"family":"Saunders","given":"W.","email":"","middleInitial":"Carl","affiliations":[],"preferred":false,"id":713938,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Budy, Phaedra E. 0000-0002-9918-1678 pbudy@usgs.gov","orcid":"https://orcid.org/0000-0002-9918-1678","contributorId":140028,"corporation":false,"usgs":true,"family":"Budy","given":"Phaedra","email":"pbudy@usgs.gov","middleInitial":"E.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":713775,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70175670,"text":"ofr20161124 - 2016 - Laboratory evaluation of the Design Analysis Associates DAA H-3613i radar water-level sensor—Results of  temperature, distance, and SDI-12 tests","interactions":[],"lastModifiedDate":"2016-10-03T11:42:46","indexId":"ofr20161124","displayToPublicDate":"2016-09-30T16:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1124","title":"Laboratory evaluation of the Design Analysis Associates DAA H-3613i radar water-level sensor—Results of  temperature, distance, and SDI-12 tests","docAbstract":"<p>The Design Analysis Associates (DAA) DAA H-3613i radar water-level sensor (DAA H-3613i), manufactured by Xylem Incorporated, was evaluated by the U.S. Geological Survey (USGS) Hydrologic Instrumentation Facility (HIF) for conformance to manufacturer’s accuracy specifications for measuring a distance throughout the sensor’s operating temperature range, for measuring distances from 3 to 15 feet at ambient temperatures, and for compliance with the SDI-12 serial-to-digital interface at 1200-baud communication standard. The DAA H-3613i is a noncontact water-level sensor that uses pulsed radar to measure the distance between the radar and the water surface from 0.75 to 131 feet over a temperature range of −40 to 60 degrees Celsius (°C). Manufacturer accuracy specifications that were evaluated, the test procedures that followed, and the results obtained are described in this report. The sensor’s accuracy specification of ± 0.01 feet (± 3 millimeters) meets USGS requirements for a primary water-stage sensor used in the operation of a streamgage. The sensor met the manufacturer’s stated accuracy specifications for water-level measurements during temperature testing at a distance of 8 feet from the target over its temperature-compensated operating range of −40 to 60 °C, except at 60 °C. At 60 °C, about half the measurements exceeded the manufacturer’s accuracy specification by not more than 0.005 feet.The sensor met the manufacturer’s stated accuracy specifications for water-level measurements during distance-accuracy testing at the tested distances from 3 to 15 feet above the water surface at the HIF.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161124","usgsCitation":"Carnley, M.V., 2016, Laboratory evaluation of the Design Analysis Associates DAA H-3613i radar water-level sensor—Results of temperature, distance, and SDI-12 tests: U.S. Geological Survey Open-File Report 2016–1124, 7 p., https://dx.doi.org/10.3133/ofr20161124. ","productDescription":"iii, 7 p.","numberOfPages":"16","onlineOnly":"Y","ipdsId":"IP-071442","costCenters":[{"id":502,"text":"Office of Surface Water","active":true,"usgs":true}],"links":[{"id":329212,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2016/1124/coverthb.jpg"},{"id":329213,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2016/1124/ofr20161124.pdf","text":"Report","size":"2.83 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2016-1124"}],"contact":"<p>Hydrologic Instrumentation Facility<br> U.S. Geological Survey<br> Building 2101<br> Stennis Space Center, MS 39529<br> <a href=\"http://water.usgs.gov/hif/\" data-mce-href=\"http://water.usgs.gov/hif/\">http://water.usgs.gov/hif/</a></p>","tableOfContents":"<ul><li>Abstract</li><li>Introduction</li><li>Description of the Design Analysis Associates DAA H-3613i Radar Water-Level Sensor</li><li>Methods</li><li>Results</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2016-09-30","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c836","contributors":{"authors":[{"text":"Carnley, Mark V. mcarnley@usgs.gov","contributorId":2723,"corporation":false,"usgs":true,"family":"Carnley","given":"Mark","email":"mcarnley@usgs.gov","middleInitial":"V.","affiliations":[{"id":502,"text":"Office of Surface Water","active":true,"usgs":true}],"preferred":true,"id":645990,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70176610,"text":"ofr20161170 - 2016 - Preliminary geologic mapping of Cretaceous and Tertiary formations in the eastern part of the Little Snake River coal field, Carbon County, Wyoming","interactions":[],"lastModifiedDate":"2016-09-30T14:14:25","indexId":"ofr20161170","displayToPublicDate":"2016-09-30T13:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1170","title":"Preliminary geologic mapping of Cretaceous and Tertiary formations in the eastern part of the Little Snake River coal field, Carbon County, Wyoming","docAbstract":"<p>In the 1970s and 1980s, C.S. Venable Barclay conducted geologic mapping of areas primarily underlain by Cretaceous coals in the eastern part of the Little Snake River coal field (LSR) in Carbon County, southwest Wyoming. With some exceptions, most of the mapping data were never published. Subsequently, after his retirement from the U.S. Geological Survey (USGS), his field maps and field notebooks were archived in the USGS Field Records. Due to a pending USGS coal assessment of the Little Snake River coal field area and planned geological mapping to be conducted by the Wyoming State Geological Survey, Barclay’s mapping data needed to be published to support these efforts. Subsequently, geologic maps were scanned and georeferenced into a geographic information system, and project and field notes were scanned into Portable Document Format (PDF) files. Data for seventeen 7½-minute quadrangles are presented in this report. This publication is solely intended to compile the mapping data as it was last worked on by Barclay and provides no interpretation or modification of his work.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161170","usgsCitation":"Haacke, J.E., Barclay, C.S.V., and Hettinger, R.D., 2016, Preliminary geologic mapping of Cretaceous and Tertiary formations in the eastern part of the Little Snake River coal field, Carbon County, Wyoming: U.S. Geological Survey Open-File Report 2016–1170, 9 p., https://dx.doi.org/10.3133/ofr20161170.","productDescription":"Report: iii, 9 p.; Field Notes; Metadata; Read Me; Spatial Data","numberOfPages":"12","onlineOnly":"Y","ipdsId":"IP-070800","costCenters":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":329139,"rank":3,"type":{"id":2,"text":"Additional Report Piece"},"url":"https://pubs.usgs.gov/of/2016/1170/ofr20161170_Field 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Director, USGS Central Energy Resources Science Center<br>Box 25046, Mail Stop 939<br>Denver, CO 80225</p><p><a href=\"http://energy.usgs.gov/\" data-mce-href=\"http://energy.usgs.gov/\">http://energy.usgs.gov/</a></p>","tableOfContents":"<ul><li>Abstract</li><li>Overview of Barclay Studies</li><li>The Little Snake River Coal Field Map Data</li><li>Summary</li><li>Acknowledgments</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"publishedDate":"2016-09-30","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c838","contributors":{"authors":[{"text":"Haacke, Jon E.","contributorId":86054,"corporation":false,"usgs":true,"family":"Haacke","given":"Jon E.","affiliations":[],"preferred":false,"id":649803,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Barclay, C. 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,{"id":70176082,"text":"fs20163065 - 2016 - Assessing potential scour using the South Carolina bridge-scour envelope curves","interactions":[],"lastModifiedDate":"2016-10-11T09:48:07","indexId":"fs20163065","displayToPublicDate":"2016-09-30T10:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-3065","title":"Assessing potential scour using the South Carolina bridge-scour envelope curves","docAbstract":"<h1>Summary</h1><p>Bridge-scour equations presented in the Federal Highway Administration Hydraulic Engineering Circular No. 18 reflect the current state-of-the practice for predicting scour at bridges. Although these laboratory-derived equations provide an important resource for assessing scour potential, there is a measure of uncertainty when applying these equations to field conditions. The uncertainty and limitations have been acknowledged by laboratory researchers and confirmed in field investigations.</p><p>Because of the uncertainty associated with bridge-scour equations, HEC-18 recommends that engineers evaluate the computed scour depths obtained from the equations and modify the resulting data if they appear unreasonable. Perhaps the best way to evaluate the reasonableness of predicted scour is to compare it to field measurements of historic scour. Historic field data show scour depths resulting from high flows and provide a reference for evaluating predicted scour. It is rare, however, that such data are available at or near a site of interest, making the evaluation of predicted scour as compared to field data difficult if not impossible. Realizing the value of historic scour measurements, the U.S. Geological Survey (USGS), in cooperation with the South Carolina Department of Transportation (SCDOT), conducted a series of three field investigations to collect historic scour data with the goal of understanding regional trends of scour at riverine bridges in South Carolina.</p><p>Historic scour measurements, including measurements of clear-water abutment, contraction, and pier scour, as well as live-bed contraction and pier scour, were made at more than 200 bridges. These field investigations provided valuable insights into regional scour trends and yielded regional bridge-scour envelope curves that can be used as supplementary tools for assessing all components of scour at riverine bridges in South Carolina.</p><p>The application and limitations of these envelope curves were documented in four reports. Because each report addresses different components of bridge scour, it was recognized that there was a need to develop an integrated procedure for applying the envelope curves to help assess scour potential at riverine bridges in South Carolina. The result of that effort is detailed in Benedict and others (2016) and summarized in this fact sheet.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20163065","collaboration":"Prepared in cooperation with the South Carolina Department of Transportation","usgsCitation":"Benedict, S.T., Feaster, T.D., and Caldwell, A.W., 2016, Assessing potential scour using the South Carolina bridge-scour envelope curves: U.S. Geological Survey Fact Sheet 2016-3065, 2 p., https://dx.doi.org/10.3133/fs20163065.","productDescription":"2 p. 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Carolina\",\"nation\":\"USA  \"}}]}","contact":"<p><a href=\"mailto:dc_sc@usgs.gov\" data-mce-href=\"mailto:dc_sc@usgs.gov\">Director</a>, South Atlantic Water Science Center<br> U.S. Geological Survey<br> 720 Gracern Road, Suite 129<br> Columbia, SC 29210<br> <a href=\"http://sc.water.usgs.gov/\" data-mce-href=\"http://sc.water.usgs.gov/\">http://sc.water.usgs.gov/</a></p>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2016-09-30","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c83c","contributors":{"authors":[{"text":"Benedict, Stephen T. benedict@usgs.gov","contributorId":3198,"corporation":false,"usgs":true,"family":"Benedict","given":"Stephen T.","email":"benedict@usgs.gov","affiliations":[{"id":559,"text":"South Carolina Water Science Center","active":true,"usgs":true}],"preferred":false,"id":649728,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Feaster, Toby D. 0000-0002-5626-5011 tfeaster@usgs.gov","orcid":"https://orcid.org/0000-0002-5626-5011","contributorId":174044,"corporation":false,"usgs":true,"family":"Feaster","given":"Toby D.","email":"tfeaster@usgs.gov","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"preferred":false,"id":647036,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Caldwell, Andral W. 0000-0003-1269-5463 acaldwel@usgs.gov","orcid":"https://orcid.org/0000-0003-1269-5463","contributorId":138690,"corporation":false,"usgs":true,"family":"Caldwell","given":"Andral W.","email":"acaldwel@usgs.gov","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true},{"id":559,"text":"South Carolina Water Science Center","active":true,"usgs":true}],"preferred":false,"id":647037,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70175349,"text":"ofr20161127 - 2016 - Geologic structure of the Yucaipa area inferred from gravity data, San Bernardino and Riverside Counties, California","interactions":[],"lastModifiedDate":"2016-10-03T11:36:18","indexId":"ofr20161127","displayToPublicDate":"2016-09-30T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1127","title":"Geologic structure of the Yucaipa area inferred from gravity data, San Bernardino and Riverside Counties, California","docAbstract":"<p class=\"p1\">In the spring of 2009, the U.S. Geological Survey, in cooperation with the San Bernardino Valley Municipal Water District, began working on a gravity survey in the Yucaipa area to explore the three-dimensional shape of the sedimentary fill (alluvial deposits) and the surface of the underlying crystalline basement rocks. As water use has increased in pace with rapid urbanization, water managers have need for better information about the subsurface geometry and the boundaries of groundwater subbasins in the Yucaipa area. The large density contrast between alluvial deposits and the crystalline basement complex permits using modeling of gravity data to estimate the thickness of alluvial deposits. The bottom of the alluvial deposits is considered to be the top of crystalline basement rocks. The gravity data, integrated with geologic information from surface outcrops and 51 subsurface borings (15 of which penetrated basement rock), indicated a complex basin configuration where steep slopes coincide with mapped faults―such as the Crafton Hills Fault and the eastern section of the Banning Fault―and concealed ridges separate hydrologically defined subbasins.</p><p class=\"p2\">Gravity measurements and well logs were the primary data sets used to define the thickness and structure of the groundwater basin. Gravity measurements were collected at 256 new locations along profiles that totaled approximately 104.6 km (65 mi) in length; these data supplemented previously collected gravity measurements. Gravity data were reduced to isostatic anomalies and separated into an anomaly field representing the valley fill. The ‘valley-fill-deposits gravity anomaly’ was converted to thickness by using an assumed, depth-varying density contrast between the alluvial deposits and the underlying bedrock.</p><p class=\"p3\">To help visualize the basin geometry, an animation of the elevation of the top of the basement-rocks was prepared. The animation “flies over” the Yucaipa groundwater basin, viewing the land surface, geology, faults, and ridges and valleys of the shaded-relief elevation of the top of the basement complex.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161127","collaboration":"Prepared in cooperation with the San Bernardino Valley Municipal Water District","usgsCitation":"Mendez, G.O., Langenheim, V.E., Morita, Andrew, and Danskin, W.R., 2016, Geologic structure of the Yucaipa area inferred from gravity data, San Bernardino and Riverside Counties, California: U.S. Geological Survey Open-File Report 2016–1127, 22 p., https://dx.doi.org/10.3133/ofr20161127.","productDescription":"Report: vii, 23 p.; Video Animation","numberOfPages":"36","onlineOnly":"Y","additionalOnlineFiles":"Y","ipdsId":"IP-077241","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":329070,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2016/1127/ofr20161127.pdf","text":"Report","size":"34 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2016-1127"},{"id":329071,"rank":3,"type":{"id":2,"text":"Additional Report Piece"},"url":"https://pubs.usgs.gov/of/2016/1127/ofr20161127_gravity.mp4","text":"Video animation","size":"47.3 MB mp4","description":"OFR 2016-1127 Video Animation","linkHelpText":"Land surface, geology, faults, wells, and elevation of the basement rocks in the Yucaipa area, California."},{"id":329069,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2016/1127/coverthb.jpg"}],"country":"United States","state":"California","county":"San Bernardino County, Riverside County","otherGeospatial":"Yucaipa Area","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -117.15888977050781,\n              33.96842016198477\n            ],\n            [\n              -117.15888977050781,\n              34.08962997133382\n            ],\n            [\n              -116.97212219238281,\n              34.08962997133382\n            ],\n            [\n              -116.97212219238281,\n              33.96842016198477\n            ],\n            [\n              -117.15888977050781,\n              33.96842016198477\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_ca@usgs.gov\" data-mce-href=\"mailto:dc_ca@usgs.gov\">Director</a>, California Water Science Center<br> U.S. Geological Survey<br> 6000 J Street, Placer Hall<br> Sacramento, CA 95819<br> <a href=\"http://ca.water.usgs.gov\" target=\"blank\" data-mce-href=\"http://ca.water.usgs.gov\">http://ca.water.usgs.gov</a></p>","tableOfContents":"<ul><li>Abstract<br></li><li>Introduction<br></li><li>Purpose and Scope<br></li><li>Geology<br></li><li>Geologic Units<br></li><li>Data Sets<br></li><li>Depth-to-Basement Profiles<br></li><li>Limitations<br></li><li>Results<br></li><li>Animation of Alluvial Thickness Model<br></li><li>References Cited<br></li></ul>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2016-09-30","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c842","contributors":{"authors":[{"text":"Mendez, Gregory O. 0000-0002-9955-3726 gomendez@usgs.gov","orcid":"https://orcid.org/0000-0002-9955-3726","contributorId":1489,"corporation":false,"usgs":true,"family":"Mendez","given":"Gregory","email":"gomendez@usgs.gov","middleInitial":"O.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":false,"id":644830,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Langenheim, Victoria E. 0000-0003-2170-5213 zulanger@usgs.gov","orcid":"https://orcid.org/0000-0003-2170-5213","contributorId":1526,"corporation":false,"usgs":true,"family":"Langenheim","given":"Victoria E.","email":"zulanger@usgs.gov","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":false,"id":644831,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Morita, Andrew 0000-0002-8120-996X","orcid":"https://orcid.org/0000-0002-8120-996X","contributorId":52292,"corporation":false,"usgs":true,"family":"Morita","given":"Andrew","affiliations":[],"preferred":false,"id":644832,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Danskin, Wesley R. 0000-0001-8672-5501 wdanskin@usgs.gov","orcid":"https://orcid.org/0000-0001-8672-5501","contributorId":1034,"corporation":false,"usgs":true,"family":"Danskin","given":"Wesley","email":"wdanskin@usgs.gov","middleInitial":"R.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":644833,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70176696,"text":"ofr20161175 - 2016 - Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon","interactions":[],"lastModifiedDate":"2016-10-12T09:45:28","indexId":"ofr20161175","displayToPublicDate":"2016-09-30T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1175","title":"Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon","docAbstract":"<h1>Executive Summary</h1><p>Multiple sampling trips during calendar years 2013 through 2015 were coordinated to provide measurements of interdependent benthic processes that potentially affect contaminant transport in Upper Klamath Lake (UKL), Oregon. The measurements were motivated by recognition that such internal processes (for example, solute benthic flux, bioturbation and solute efflux by benthic invertebrates, and physical groundwater-surface water interactions) were not integrated into existing management models for UKL. Up until 2013, all of the benthic-flux studies generally had been limited spatially to a number of sites in the northern part of UKL and limited temporally to 2–3 samplings per year. All of the benthic invertebrate studies also had been limited to the northern part of the lake; however, intensive temporal (weekly) studies had previously been completed independent of benthic-flux studies. Therefore, knowledge of both the spatial and temporal variability in benthic flux and benthic invertebrate distributions for the entire lake was lacking. To address these limitations, we completed a lakewide spatial study during 2013 and a coordinated temporal study with weekly sampling of benthic flux and benthic invertebrates during 2014. Field design of the spatially focused study in 2013 involved 21 sites sampled three times as the summer cyanobacterial bloom developed (that is, <span class=\"aBn\" data-term=\"goog_1023710937\"><span class=\"aQJ\">May 23</span></span>, <span class=\"aBn\" data-term=\"goog_1023710938\"><span class=\"aQJ\">June 13</span></span>, and July 3, 2013). Results of the 27-week, temporally focused study of one site in 2014 were summarized and partitioned into three periods (referred to herein as pre-bloom, bloom and post-bloom periods), each period involving 9 weeks of profiler deployments, water column and benthic sampling. Partitioning of the pre-bloom, bloom, and post-bloom periods were based on water-column chlorophyll concentrations and involved the following date intervals, respectively: <span class=\"aBn\" data-term=\"goog_1023710939\"><span class=\"aQJ\">April 15 through June 10</span></span>, <span class=\"aBn\" data-term=\"goog_1023710940\"><span class=\"aQJ\">June 17 through August 13</span></span>, and August 20 through October 16, 2014.&nbsp;</p><p>To examine dissolved-solute (0.2-micrometer [μm] filtered) benthic flux, sets of nonmetallic pore-water profilers (U.S. Patent 8,051,727 B1) were deployed. In 2013, the deployment of profilers at 21 UKL sites occurred at the beginning of the annual cyanobacterial bloom of <i>Aphanizomenon flos–aquae </i>(AFA), in the middle of the bloom period, and at the peak of the bloom. Coordinated benthic invertebrate collections also were made. Based on results from 2013, weekly deployments of profilers and collection of benthic invertebrate samples from late spring to early autumn were used to estimate temporal trends in solute flux and benthic invertebrate densities. Estimates of nutrient efflux by benthic invertebrates were determined in the spring and autumn from 2011 through 2013 and three times (spring, summer, and autumn) in 2015. This work extends UKL studies that began in 2006 to quantify the importance of benthic solute sources in the lake. In 2015, piezometers and thermistor sets were deployed to quantify potential groundwater exchange with the lake water column.&nbsp;</p><p>Analysis of the 2013 soluble reactive phosphorus (SRP) benthic flux indicated no effect of location (lake region), habitat, or sampling period, and the average lakewide flux values were consistent with earlier studies that had been confined to the northern region of UKL and adjacent wetlands. The 2014 study therefore focused on estimating temporal trends at a site within Ball Bay. During both 2013 and 2014 field studies, fluxes of macronutrients (soluble reactive phosphorus (SRP) and ammonia) and micronutrients (iron [Fe] and manganese [Mn]) were consistently positive and increased prior to the initial AFA bloom, varied or lagged with water-column chlorophyll during the summer bloom period, then decreased after the cyanobacterial blooms, only to rebound toward pre-bloom conditions in the final weeks of sampling. These four solutes exhibited benthic loads greater than maximum riverine loads estimated during the spring and early summers of 2013 and 2014. However, consistently detectable concentrations for all four solutes provide no evidence that they consistently serve as the limiting nutrient for primary production in the lake. In contrast to the four solutes (SRP, ammonia, Fe, and Mn), benthic fluxes of dissolved arsenic (As) were both negative and positive (that is, the lakebed currently serves as both a source and a sink for dissolved As, depending on season). In a further contrast with SRP, ammonia, dissolved Fe, and Mn, dissolved-As riverine loads to UKL were of similar magnitude to benthic loads. A negative relationship between dissolved-As flux and water-column As over the 2014 temporal study provides a potential advantage for the management of water-quality in contrast to solutes, like SRP or ammonia, with consistently positive flux.&nbsp;</p><p>The mean total benthic invertebrate density during 2013 was 12,610 individuals per square meter (n=63). Although benthic invertebrate density did not change over the study period, it was higher in littoral habitats than open-lake or trench habitats and higher in the northern region compared to the central or southern regions of UKL. Mean total benthic invertebrate density during 2014 was 19,726 individuals m<span>−2 </span>(n=27). Density during the pre-bloom and bloom periods of April 15 to August 13, 2014 (the first two thirds of the 2014 sampling period), were similar to 2013. However, benthic invertebrate density more than doubled during the latter one-third of the study, that is, the post-bloom period between August 20 to October 16, 2014. Oligochaeta, Chironomidae and Hirudinea represented well over 90 percent of the benthic fauna; Oligochaeta were twice as abundant as Chironomidae or Hirudinea, the latter two of which were similar in density.&nbsp;</p><p>Benthic invertebrates may enhance dissolved-nutrient (or toxicant) transport across the sediment-water interface by (1) modifying diffusion-layer thicknesses and permeability through bioturbation, (2) enhancing advective flow across the interface through bioirrigation, and (3) excreting or expelling dissolved or particulate solutes directly into the overlying water column (Boudreau and Jorgensen, 2001). We evaluated SRP efflux via excretion for approximately 15 different major taxa in UKL. Once these measures were scaled, it was evident that benthic invertebrates potentially contribute approximately 1.5 times the amount of SRP to the water column of Upper Klamath Lake as diffusive SRP flux alone, measured in profiler deployments.&nbsp;</p><p>Sets of piezometers and temperature loggers were deployed in UKL to obtain estimates of vertical advective solute flux. The pressure transducer installations, within the piezometers, did not perform as designed, rendering the head gradient data unreliable. However, in terms of future research, this field work did demonstrate the feasibility of collecting vertical gradient data with piezometer deployments. Advective flux estimates herein are based solely on heat-flow modeling based on temperature data from four lake sites, without use of transducer data. Given the magnitudes (both positive or negative) of the heat-transfer fluxes for SRP, relative to diffusive-flux and macroinvertebrate efflux measurements (all positive but spanning the same orders of magnitude), further examination of solute advective flux is recommended as a potential transport process to integrate into existing water-quality (for example, Total Maximum Daily Load [TMDL]) models.&nbsp;</p><p>As a complement to the biogeochemical focus of this study, initial analyses of suspended-particle (floc) characteristics and settling velocities from the water column were derived near the surface and lakebed at two UKL sites. To better understand changing particle characteristics during the AFA-bloom period, suspended particles were examined in 2015 using a LabSFLOC (LF), which is a Laboratory Spectral Flocculation Characteristics version of an In-Situ Settling Velocity instrument (INSSEV-LF). Particle characteristics and settling velocities were analyzed from the water column near the surface (sample <i>dp_10</i>) and lakebed (sample <i>dp_90</i>) at two lake sites (open-lake site ML and littoral site LS01). The term “floc” refers herein to suspended particles that may aggregate or disaggregate to change in size, composition, and settling velocity.&nbsp;</p><p>During pre-bloom (May) conditions, where maximum suspended particulate matter concentration (SPMC) was 140 milligrams per liter (mg&nbsp;<span class=\"nowrap\">L<sup>−1</sup></span>) was now observed at site LS01 in close proximity to the bed, where D<span><sub>mean</sub> </span>peaked at 305 μm, and the corresponding Ws<span><sub>mean</sub> </span>was 3.9 millimeters per second (mm s<sup>−1</sup>). The high near-bed SPMC (828 mg L<sup>−1</sup>) experienced during post-bloom October 2015 at LS01 formed a benthic nepheloid layer (BNL) above the lake’s bed. Numerous low density, fast settling macrofloc-sized organic aggregates (D &gt;160 μm) were observed (some up to 1 mm in size) near bed at LS01 both during the bloom and post-bloom conditions; many of these flocs displayed fibrous organic structures. In terms of mass settling fluxes, the post-bloom BNL produced a total MSF of 4,139 milligrams per square meter per second (mg m<span><sup>−2</sup> </span>s<sup>−1</sup>) (92.1 percent of MSF credited to the macrofloc-sized organic aggregates/cyanobacterial colonies); that was nearly three times the corresponding near-bed settling flux observed during the July 2015 bloom and 360 times greater than the pre-bloom conditions from May 2015 (98.8 percent and 14 percent of MSF credited to the macrofloc-sized fractions for those respective months). Such changes in the near-bed settling flux demonstrate the highly significant seasonal effects that the AFA bloom has on the floc depositional fluxes in UKL and highlights the importance of seasonal monitoring of these conditions in order to correctly parameterize the wide range in depositional characteristics and floc properties measured throughout UKL.&nbsp;</p><p>Collectively, floc populations observed within UKL demonstrated a wide range in settling velocity (Ws) for a given particle size, D. Similarly, a given settling velocity was not associated with a specific particle size. This variability in particle characteristics and properties indicates the influence of varying floc effective density and its effect on mass and mass settling fluxes (MSF). The use of instruments, such as the INSSEV-LF, enables measuring the variability of settling velocity and its relation to particle density and size.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161175","collaboration":"Prepared in cooperation with the Bureau of Reclamation","usgsCitation":"Kuwabara, J.S., Topping, B.R., Carter, J.L., Carlson, R.A., Parchaso, F., Fend, S.V., Stauffer-Olsen, N., Manning, A.J., Land, J.M., 2016, Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon (ver. 1.1, October 2016): U.S. Geological Survey Open-File Report 2016–1175, 103 p., https://dx.doi.org/10.3133/ofr20161175. ","productDescription":"Report: viii, 103 p.; 2 Tables","numberOfPages":"115","onlineOnly":"Y","additionalOnlineFiles":"Y","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"links":[{"id":329222,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2016/1175/coverthb.jpg"},{"id":329223,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2016/1175/ofr20161175.pdf","text":"Report","size":"4.1 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2016-1175"},{"id":329224,"rank":3,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/of/2016/1175/ofr20161175_table4.xlsx","text":"Table 4","size":"96 KB","linkFileType":{"id":3,"text":"xlsx"},"description":"OFR 2016-1175 Table 4"},{"id":329425,"rank":5,"type":{"id":25,"text":"Version History"},"url":"https://pubs.usgs.gov/of/2016/1175/versionHist.txt","size":"1 KB","linkFileType":{"id":2,"text":"txt"},"description":"OFR 2016-1175 Version History"},{"id":329424,"rank":4,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/of/2016/1175/ofr20161175_table19.xlsx","text":"Table 19","size":"18 MB","linkFileType":{"id":3,"text":"xlsx"},"description":"OFR 2016-1175 Table 19"}],"country":"United States","state":"Oregon","otherGeospatial":"Upper Klamath Lake","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -122.09793090820311,\n              42.231567925608616\n            ],\n            [\n              -122.09793090820311,\n              42.70464124398721\n            ],\n            [\n              -121.79992675781249,\n              42.70464124398721\n            ],\n            [\n              -121.79992675781249,\n              42.231567925608616\n            ],\n            [\n              -122.09793090820311,\n              42.231567925608616\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","edition":"Version 1.0: Originally posted September 30, 2016; Version 1.1: October 11, 2016","contact":"<p><a href=\"http://water.usgs.gov/nrp/index-scientists.html\" target=\"_blank\" data-mce-href=\"http://water.usgs.gov/nrp/index-scientists.html\">NRP staff</a>&nbsp;<br>Water Resources National Research Program&nbsp;<br>U.S. Geological Survey&nbsp;<br>345 Middlefield Road, MS-435&nbsp;<br>Menlo Park, CA 94025&nbsp;<br><a href=\"http://water.usgs.gov/nrp/\" target=\"_blank\" data-mce-href=\"http://water.usgs.gov/nrp/\">National Research Program</a></p>","tableOfContents":"<ul><li>Executive Summary</li><li>Introduction</li><li>Results and Discussion</li><li>Methods</li><li>References Cited</li><li>Tables</li></ul>","publishedDate":"2016-09-30","revisedDate":"2016-10-11","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c83e","contributors":{"authors":[{"text":"Kuwabara, James S. 0000-0003-2502-1601 kuwabara@usgs.gov","orcid":"https://orcid.org/0000-0003-2502-1601","contributorId":3374,"corporation":false,"usgs":true,"family":"Kuwabara","given":"James","email":"kuwabara@usgs.gov","middleInitial":"S.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":649913,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Topping, Brent R. 0000-0002-7887-4221 btopping@usgs.gov","orcid":"https://orcid.org/0000-0002-7887-4221","contributorId":1484,"corporation":false,"usgs":true,"family":"Topping","given":"Brent","email":"btopping@usgs.gov","middleInitial":"R.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":649914,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Carter, James L. 0000-0002-0104-9776 jlcarter@usgs.gov","orcid":"https://orcid.org/0000-0002-0104-9776","contributorId":3278,"corporation":false,"usgs":true,"family":"Carter","given":"James","email":"jlcarter@usgs.gov","middleInitial":"L.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":649915,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Carlson, Rick A","contributorId":120306,"corporation":false,"usgs":true,"family":"Carlson","given":"Rick A","affiliations":[],"preferred":false,"id":649916,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Parchaso, Francis 0000-0002-9471-7787 parchaso@usgs.gov","orcid":"https://orcid.org/0000-0002-9471-7787","contributorId":150620,"corporation":false,"usgs":true,"family":"Parchaso","given":"Francis","email":"parchaso@usgs.gov","affiliations":[{"id":37464,"text":"WMA - Laboratory & Analytical Services Division","active":true,"usgs":true},{"id":36183,"text":"Hydro-Ecological Interactions Branch","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":649917,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Fend, Steven V. 0000-0002-4638-6602 svfend@usgs.gov","orcid":"https://orcid.org/0000-0002-4638-6602","contributorId":3591,"corporation":false,"usgs":true,"family":"Fend","given":"Steven","email":"svfend@usgs.gov","middleInitial":"V.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":649918,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Stauffer-Olsen, Natalie","contributorId":175078,"corporation":false,"usgs":true,"family":"Stauffer-Olsen","given":"Natalie","affiliations":[],"preferred":false,"id":649919,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Manning, Andrew J.","contributorId":175079,"corporation":false,"usgs":false,"family":"Manning","given":"Andrew","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":649920,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Land, Jennie M.","contributorId":175080,"corporation":false,"usgs":true,"family":"Land","given":"Jennie","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":649921,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70176920,"text":"70176920 - 2016 - Characterizing changes in streamflow and sediment supply in the Sacramento River Basin, California, using hydrological simulation program—FORTRAN (HSPF)","interactions":[],"lastModifiedDate":"2017-10-30T09:43:05","indexId":"70176920","displayToPublicDate":"2016-09-30T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3709,"text":"Water","active":true,"publicationSubtype":{"id":10}},"title":"Characterizing changes in streamflow and sediment supply in the Sacramento River Basin, California, using hydrological simulation program—FORTRAN (HSPF)","docAbstract":"<p><span>A daily watershed model of the Sacramento River Basin of northern California was developed to simulate streamflow and suspended sediment transport to the San Francisco Bay-Delta. To compensate for sparse data, a unique combination of model inputs was developed, including meteorological variables, potential evapotranspiration, and parameters defining hydraulic geometry. A slight decreasing trend of sediment loads and concentrations was statistically significant in the lowest 50% of flows, supporting the observed historical sediment decline. Historical changes in climate, including seasonality and decline of snowpack, contribute to changes in streamflow, and are a significant component describing the mechanisms responsible for the decline in sediment. Several wet and dry hypothetical climate change scenarios with temperature changes of 1.5 °C and 4.5 °C were applied to the base historical conditions to assess the model sensitivity of streamflow and sediment to changes in climate. Of the scenarios evaluated, sediment discharge for the Sacramento River Basin increased the most with increased storm magnitude and frequency and decreased the most with increases in air temperature, regardless of changes in precipitation. The model will be used to develop projections of potential hydrologic and sediment trends to the Bay-Delta in response to potential future climate scenarios, which will help assess the hydrological and ecological health of the Bay-Delta into the next century.</span></p>","language":"English","publisher":"Molecular Diversity Preservation International","publisherLocation":"Basel, Switzerland","doi":"10.3390/w8100432","usgsCitation":"Stern, M.A., Flint, L.E., Minear, J.T., Flint, A.L., and Wright, S., 2016, Characterizing changes in streamflow and sediment supply in the Sacramento River Basin, California, using hydrological simulation program—FORTRAN (HSPF): Water, v. 8, no. 10, https://doi.org/10.3390/w8100432.","startPage":"432","numberOfPages":"21","ipdsId":"IP-073991","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true},{"id":552,"text":"San Francisco Bay-Delta","active":false,"usgs":true}],"links":[{"id":462073,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/w8100432","text":"Publisher Index Page"},{"id":329512,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Sacramento River Basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -123.5,\n              38.25\n            ],\n            [\n              -123.5,\n              41\n            ],\n            [\n              -121,\n              41\n            ],\n            [\n              -121,\n              38.25\n            ],\n            [\n              -123.5,\n              38.25\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"8","issue":"10","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57ffdefee4b0824b2d179cf4","contributors":{"authors":[{"text":"Stern, Michelle A. 0000-0003-3030-7065 mstern@usgs.gov","orcid":"https://orcid.org/0000-0003-3030-7065","contributorId":4244,"corporation":false,"usgs":true,"family":"Stern","given":"Michelle","email":"mstern@usgs.gov","middleInitial":"A.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":650712,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Flint, Lorraine E. 0000-0002-7868-441X lflint@usgs.gov","orcid":"https://orcid.org/0000-0002-7868-441X","contributorId":1184,"corporation":false,"usgs":true,"family":"Flint","given":"Lorraine","email":"lflint@usgs.gov","middleInitial":"E.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":650713,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Minear, Justin Toby jminear@usgs.gov","contributorId":3736,"corporation":false,"usgs":true,"family":"Minear","given":"Justin","email":"jminear@usgs.gov","middleInitial":"Toby","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":650714,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Flint, Alan L. 0000-0002-5118-751X aflint@usgs.gov","orcid":"https://orcid.org/0000-0002-5118-751X","contributorId":1492,"corporation":false,"usgs":true,"family":"Flint","given":"Alan","email":"aflint@usgs.gov","middleInitial":"L.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true},{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":650715,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Wright, Scott 0000-0002-0387-5713 sawright@usgs.gov","orcid":"https://orcid.org/0000-0002-0387-5713","contributorId":1536,"corporation":false,"usgs":true,"family":"Wright","given":"Scott","email":"sawright@usgs.gov","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":650716,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70176670,"text":"ofr20161172 - 2016 - Feasibility study of earthquake early warning (EEW) in Hawaii","interactions":[],"lastModifiedDate":"2016-10-03T11:40:00","indexId":"ofr20161172","displayToPublicDate":"2016-09-30T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1172","title":"Feasibility study of earthquake early warning (EEW) in Hawaii","docAbstract":"<p>The effects of earthquake shaking on the population and infrastructure across the State of Hawaii could be catastrophic, and the high seismic hazard in the region emphasizes the likelihood of such an event. Earthquake early warning (EEW) has the potential to give several seconds of warning before strong shaking starts, and thus reduce loss of life and damage to property. The two approaches to EEW are (1) a network approach (such as ShakeAlert or ElarmS) where the regional seismic network is used to detect the earthquake and distribute the alarm and (2) a local approach where a critical facility has a single seismometer (or small array) and a warning system on the premises.</p><p>The network approach, also referred to here as ShakeAlert or ElarmS, uses the closest stations within a regional seismic network to detect and characterize an earthquake. Most parameters used for a network approach require observations on multiple stations (typically 3 or 4), which slows down the alarm time slightly, but the alarms are generally more reliable than with single-station EEW approaches. The network approach also benefits from having stations closer to the source of any potentially damaging earthquake, so that alarms can be sent ahead to anyone who subscribes to receive the notification. Thus, a fully implemented ShakeAlert system can provide seconds of warning for both critical facilities and general populations ahead of damaging earthquake shaking.</p><p>The cost to implement and maintain a fully operational ShakeAlert system is high compared to a local approach or single-station solution, but the benefits of a ShakeAlert system would be felt statewide—the warning times for strong shaking are potentially longer for most sources at most locations.</p><p>The local approach, referred to herein as “single station,” uses measurements from a single seismometer to assess whether strong earthquake shaking can be expected. Because of the reliance on a single station, false alarms are more common than when using a regional network of seismometers. Given the current network, a single-station approach provides more warning for damaging earthquakes that occur close to the station, but it would have limited benefit compared to a fully implemented ShakeAlert system. For Honolulu, for example, the single-station approach provides an advantage over ShakeAlert only for earthquakes that occur in a narrow zone extending northeast and southwest of O‘ahu. Instrumentation and alarms associated with the single-station approach are typically maintained&nbsp;and assessed within the target facility, and thus no outside connectivity is required. A single-station approach, then, is unlikely to help broader populations beyond the individuals at the target facility, but they have the benefit of being commercially available for relatively little cost. </p><p>The USGS Hawaiian Volcano Observatory (HVO) is the Advanced National Seismic System (ANSS) regional seismic network responsible for locating and characterizing earthquakes across the State of Hawaii. During 2014 and 2015, HVO tested a network-based EEW algorithm within the current seismic network in order to assess the suitability for building a full EEW system. Using the current seismic instrumentation and processing setup at HVO, it is possible for a network approach to release an alarm a little more than 3 seconds after the earthquake is recorded on the fourth seismometer. Presently, earthquakes having M≥3 detected with the ElarmS algorithm have an average location error of approximately 4.5 km and an average magnitude error of -0.3 compared to the reviewed catalog locations from the HVO. Additional stations and upgrades to existing seismic stations would serve to improve solution precision and warning times and additional staffing would be required to provide support for a robust, network-based EEW system. </p><p>For a critical facility on the Island of Hawaiʻi, such as the telescopes atop Mauna Kea, one phased approach to mitigate losses could be to immediately install a single station system to establish some level of warning. Subsequently, supporting the implementation of a full network-based EEW system on the Island of Hawaiʻi would provide additional benefit in the form of improved warning times once the system is fully installed and operational, which may take several years. </p><p>Distributed populations across the Hawaiian Islands, including those outside the major cities and far from the likely earthquake source areas, would likely only benefit from a network approach such as ShakeAlert to provide warnings of strong shaking. </p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161172","usgsCitation":"Thelen, W.A., Hotovec-Ellis, A.J., Bodin, P., 2016, Feasibility study of earthquake early warning (EEW) in Hawaii: U.S. Geological Survey Open-File Report 2016–1172, 33 p., https://dx.doi.org/10.3133/ofr20161172.","productDescription":"iii, 30 p.","numberOfPages":"35","onlineOnly":"Y","ipdsId":"IP-079231","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":329083,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2016/1172/ofr20161172.pdf","text":"Report","size":"2.6 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2016-1172"},{"id":329082,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2016/1172/coverthb.jpg"}],"country":"United 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 \"}}]}","contact":"<p><a href=\"http://hvo.wr.usgs.gov/observatory/contactHVO.html\" target=\"blank\" data-mce-href=\"http://hvo.wr.usgs.gov/observatory/contactHVO.html\">Contact HVO</a><br>Volcano Science Center, Hawaiian Volcano Observatory<br>U.S. Geological Survey<br>P.O. Box 51, 1 Crater Rim Road<br>Hawaiʻi Volcanoes National Park, HI 96718-0051<br> <a href=\"http://hvo.wr.usgs.gov/\" target=\"blank\" data-mce-href=\"http://hvo.wr.usgs.gov/\">http://hvo.wr.usgs.gov/</a></p>","tableOfContents":"<ul><li>Executive Summary<br></li><li>Introduction<br></li><li>Current State of the Seismic Network<br></li><li>Theoretical Performance of ElarmS and a Single Station Within the Current Network<br></li><li>Steps Toward Full EEW Implementation<br></li><li>ElarmS Compared to a Single-Station Approach<br></li><li>Summary<br></li><li>References Cited<br></li></ul>","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"publishedDate":"2016-09-30","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c840","contributors":{"authors":[{"text":"Thelen, Weston A. 0000-0003-2534-5577 wthelen@usgs.gov","orcid":"https://orcid.org/0000-0003-2534-5577","contributorId":4126,"corporation":false,"usgs":true,"family":"Thelen","given":"Weston","email":"wthelen@usgs.gov","middleInitial":"A.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":649851,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hotovec-Ellis, Alicia J.","contributorId":81023,"corporation":false,"usgs":true,"family":"Hotovec-Ellis","given":"Alicia","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":649852,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bodin, Paul","contributorId":104142,"corporation":false,"usgs":true,"family":"Bodin","given":"Paul","affiliations":[],"preferred":false,"id":649853,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70156288,"text":"tm6A53 - 2016 - MT3D-USGS version 1: A U.S. Geological Survey release of MT3DMS updated with new and expanded transport capabilities for use with MODFLOW","interactions":[],"lastModifiedDate":"2016-10-03T11:14:03","indexId":"tm6A53","displayToPublicDate":"2016-09-30T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":335,"text":"Techniques and Methods","code":"TM","onlineIssn":"2328-7055","printIssn":"2328-7047","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"6-A53","title":"MT3D-USGS version 1: A U.S. Geological Survey release of MT3DMS updated with new and expanded transport capabilities for use with MODFLOW","docAbstract":"<p class=\"p1\">MT3D-USGS, a U.S. Geological Survey updated release of the groundwater solute transport code MT3DMS, includes new transport modeling capabilities to accommodate flow terms calculated by MODFLOW packages that were previously unsupported by MT3DMS and to provide greater flexibility in the simulation of solute transport and reactive solute transport. Unsaturated-zone transport and transport within streams and lakes, including solute exchange with connected groundwater, are among the new capabilities included in the MT3D-USGS code. MT3D-USGS also includes the capability to route a solute through dry cells that may occur in the Newton-Raphson formulation of MODFLOW (that is, MODFLOW-NWT). New chemical reaction Package options include the ability to simulate inter-species reactions and parent-daughter chain reactions. A new pump-and-treat recirculation package enables the simulation of dynamic recirculation with or without treatment for combinations of wells that are represented in the flow model, mimicking the above-ground treatment of extracted water. A reformulation of the treatment of transient mass storage improves conservation of mass and yields solutions for better agreement with analytical benchmarks. Several additional features of MT3D-USGS are (1) the separate specification of the partitioning coefficient (<i>K</i><sub><i>d</i></sub>) within mobile and immobile domains; (2) the capability to assign prescribed concentrations to the top-most active layer; (3) the change in mass storage owing to the change in water volume now appears as its own budget item in the global mass balance summary; (4) the ability to ignore cross-dispersion terms; (5) the definition of Hydrocarbon Spill-Source Package (HSS) mass loading zones using regular and irregular polygons, in addition to the currently supported circular zones; and (6) the ability to specify an absolute minimum thickness rather than the default percent minimum thickness in dry-cell circumstances.</p><p class=\"p2\">Benchmark problems that implement the new features and packages test the accuracy of new code through comparison to analytical benchmarks, as well as to solutions from other published codes. The input file structure for MT3D-USGS adheres to MT3DMS conventions for backward compatibility: the new capabilities and packages described herein are readily invoked by adding three-letter package name acronyms to the name file or by setting input flags as needed. Memory is managed in MT3D-USGS using FORTRAN modules in order to simplify code development and expansion.</p>","largerWorkType":{"id":18,"text":"Report"},"largerWorkTitle":"Section A: Ground water in Book 6: <i>Modeling techniques</i>","largerWorkSubtype":{"id":5,"text":"USGS Numbered Series"},"language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/tm6A53","collaboration":"Prepared in collaboration with S.S. Papadopulos & Associates, Inc.","usgsCitation":"Bedekar, Vivek, Morway, E.D., Langevin, C.D., and Tonkin, Matt, 2016, MT3D-USGS version 1: A U.S. Geological Survey release of MT3DMS updated with new and expanded transport capabilities for use with MODFLOW:\nU.S. Geological Survey Techniques and Methods 6-A53, 69 p., https://dx.doi.org/10.3133/tm6A53.","productDescription":"Report: x, 69 p.; Application Site","numberOfPages":"84","onlineOnly":"Y","ipdsId":"IP-053896","costCenters":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"links":[{"id":329190,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/tm/06/a53/coverthb.jpg"},{"id":329191,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/tm/06/a53/tm06a53.pdf","text":"Report","size":"4.7 MB","linkFileType":{"id":1,"text":"pdf"},"description":"TM 6-A53"},{"id":329192,"rank":3,"type":{"id":4,"text":"Application Site"},"url":"https://dx.doi.org/10.5066/F75T3HKD","text":"MT3D-USGS Version 1","description":"TM 6-A53 MT3D-USGS Version 1"}],"publicComments":"Ground Water Resources Program\nThis report is Chapter 53 of Section A: Ground water in Book 6: <i>Modeling techniques</i>.","contact":"<p>Office of Groundwater<br> U.S. Geological Survey<br> Mail Stop 411<br> 12201 Sunrise Valley Drive<br> Reston, VA 20192<br> <a href=\"http://water.usgs.gov/ogw/\" target=\"_blank\" data-mce-href=\"http://water.usgs.gov/ogw/\">http://water.usgs.gov/ogw/</a></p>","tableOfContents":"<ul><li>Abstract<br></li><li>Introduction<br></li><li>Mathematical Model and Formulations in MT3D-USGS<br></li><li>Modifications to the Existing MT3DMS Program and Packages<br></li><li>New Transport Packages Developed for MT3D-USGS<br></li><li>Benchmark Problems and Application Examples<br></li><li>Summary<br></li><li>References Cited<br></li></ul>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2016-09-30","noUsgsAuthors":false,"publicationDate":"2016-09-30","publicationStatus":"PW","scienceBaseUri":"57f7c63be4b0bc0bec09c844","contributors":{"authors":[{"text":"Bedekar, Vivek","contributorId":80985,"corporation":false,"usgs":true,"family":"Bedekar","given":"Vivek","email":"","affiliations":[],"preferred":false,"id":568521,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Morway, Eric D.","contributorId":72276,"corporation":false,"usgs":true,"family":"Morway","given":"Eric D.","affiliations":[],"preferred":false,"id":568520,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Langevin, Christian D. 0000-0001-5610-9759 langevin@usgs.gov","orcid":"https://orcid.org/0000-0001-5610-9759","contributorId":1030,"corporation":false,"usgs":true,"family":"Langevin","given":"Christian","email":"langevin@usgs.gov","middleInitial":"D.","affiliations":[{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true}],"preferred":true,"id":568522,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Tonkin, Matthew J.","contributorId":26376,"corporation":false,"usgs":true,"family":"Tonkin","given":"Matthew","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":568523,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70174889,"text":"ofr20161116 - 2016 - User’s manual for the Automated Data Assurance and Management application developed for quality control of Everglades Depth Estimation Network water-level data","interactions":[],"lastModifiedDate":"2016-09-29T10:05:26","indexId":"ofr20161116","displayToPublicDate":"2016-09-29T10:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1116","title":"User’s manual for the Automated Data Assurance and Management application developed for quality control of Everglades Depth Estimation Network water-level data","docAbstract":"<p>The generation of Everglades Depth Estimation Network (EDEN) daily water-level and water-depth maps is dependent on high quality real-time data from over 240 water-level stations. To increase the accuracy of the daily water-surface maps, the Automated Data Assurance and Management (ADAM) tool was created by the U.S. Geological Survey as part of Greater Everglades Priority Ecosystems Science. The ADAM tool is used to provide accurate quality-assurance review of the real-time data from the EDEN network and allows estimation or replacement of missing or erroneous data. This user’s manual describes how to install and operate the ADAM software. File structure and operation of the ADAM software is explained using examples.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161116","collaboration":"Greater Everglades Priority Ecosystems Science","usgsCitation":"Petkewich, M.D., Daamen, R.C., Roehl, E.A., and Conrads, P.A., 2016, User’s manual for the Automated Data Assurance and Management application developed for quality control of Everglades Depth Estimation Network water-level data: U.S. Geological Survey Open-File Report 2016–1116, 28 p., https://dx.doi.org/10.3133/ofr20161116.","productDescription":"Report: vi, 28 p.; Companion File","numberOfPages":"38","onlineOnly":"Y","ipdsId":"IP-076311","costCenters":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"links":[{"id":329016,"rank":4,"type":{"id":22,"text":"Related Work"},"url":"https://pubs.usgs.gov/publication/sir20165094","text":"Scientific Investigations Report 2016–5094","description":"Scientific Investigations Report 2016–5094","linkHelpText":"- Using Inferential Sensors for Quality Control of Everglades Depth Estimation Network Water-Level Data"},{"id":328990,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2016/1116/ofr20161116.pdf","text":"Report","size":"13.3 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2016-1116"},{"id":328989,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2016/1116/coverthb.jpg"},{"id":329002,"rank":3,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/of/2016/1116/downloads","text":"Executable files for Automated Data Assurance and Management application","description":"OFR 2016-1116"}],"contact":"<p><a href=\"mailto:dc_sc@usgs.gov\" data-mce-href=\"mailto:dc_sc@usgs.gov\">Director</a>, South Atlantic Water Science Center<br> U.S. Geological Survey<br> Stephenson Center, Suite 129<br> Gracern Road<br> Columbia, SC 29210<br> <a href=\"https://www2.usgs.gov/water/southatlantic/\" data-mce-href=\"https://www2.usgs.gov/water/southatlantic/\">https://www2.usgs.gov/water/southatlantic</a></p>","tableOfContents":"<ul><li>Abstract&nbsp;</li><li>Introduction</li><li>Application Files&nbsp;</li><li>Installation, System Requirements, and Removal</li><li>Application Overview</li><li>Operation&nbsp;</li><li>Application Input File Format</li><li>Application User Worksheets</li><li>ADAMDB Table Structure</li><li>Summary</li><li>Reference Cited</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2016-09-29","noUsgsAuthors":false,"publicationDate":"2016-09-29","publicationStatus":"PW","scienceBaseUri":"57ed2bdae4b090825011d41a","contributors":{"authors":[{"text":"Petkewich, Matthew D. 0000-0002-5749-6356 mdpetkew@usgs.gov","orcid":"https://orcid.org/0000-0002-5749-6356","contributorId":982,"corporation":false,"usgs":true,"family":"Petkewich","given":"Matthew","email":"mdpetkew@usgs.gov","middleInitial":"D.","affiliations":[{"id":559,"text":"South Carolina Water Science Center","active":true,"usgs":true},{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"preferred":true,"id":643008,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Daamen, Ruby C.","contributorId":105391,"corporation":false,"usgs":true,"family":"Daamen","given":"Ruby","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":643009,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Roehl, Edwin A.","contributorId":89242,"corporation":false,"usgs":true,"family":"Roehl","given":"Edwin","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":643010,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Conrads, Paul 0000-0003-0408-4208 pconrads@usgs.gov","orcid":"https://orcid.org/0000-0003-0408-4208","contributorId":764,"corporation":false,"usgs":true,"family":"Conrads","given":"Paul","email":"pconrads@usgs.gov","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true},{"id":559,"text":"South Carolina Water Science Center","active":true,"usgs":true}],"preferred":false,"id":643011,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70174219,"text":"sir20165094 - 2016 - Using inferential sensors for quality control of Everglades Depth Estimation Network water-level data","interactions":[],"lastModifiedDate":"2016-09-29T10:11:07","indexId":"sir20165094","displayToPublicDate":"2016-09-29T10:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-5094","title":"Using inferential sensors for quality control of Everglades Depth Estimation Network water-level data","docAbstract":"<p>The Everglades Depth Estimation Network (EDEN), with over 240 real-time gaging stations, provides hydrologic data for freshwater and tidal areas of the Everglades. These data are used to generate daily water-level and water-depth maps of the Everglades that are used to assess biotic responses to hydrologic change resulting from the U.S. Army Corps of Engineers Comprehensive Everglades Restoration Plan. The generation of EDEN daily water-level and water-depth maps is dependent on high quality real-time data from water-level stations. Real-time data are automatically checked for outliers by assigning minimum and maximum thresholds for each station. Small errors in the real-time data, such as gradual drift of malfunctioning pressure transducers, are more difficult to immediately identify with visual inspection of time-series plots and may only be identified during on-site inspections of the stations. Correcting these small errors in the data often is time consuming and water-level data may not be finalized for several months. To provide daily water-level and water-depth maps on a near real-time basis, EDEN needed an automated process to identify errors in water-level data and to provide estimates for missing or erroneous water-level data.</p><p>The Automated Data Assurance and Management (ADAM) software uses inferential sensor technology often used in industrial applications. Rather than installing a redundant sensor to measure a process, such as an additional water-level station, inferential sensors, or virtual sensors, were developed for each station that make accurate estimates of the process measured by the hard sensor (water-level gaging station). The inferential sensors in the ADAM software are empirical models that use inputs from one or more proximal stations. The advantage of ADAM is that it provides a redundant signal to the sensor in the field without the environmental threats associated with field conditions at stations (flood or hurricane, for example). In the event that a station does malfunction, ADAM provides an accurate estimate for the period of missing data. The ADAM software also is used in the quality assurance and quality control of the data. The virtual signals are compared to the real-time data, and if the difference between the two signals exceeds a certain tolerance, corrective action to the data and (or) the gaging station can be taken. The ADAM software is automated so that, each morning, the real-time EDEN data are compared to the inferential sensor signals and digital reports highlighting potential erroneous real-time data are generated for appropriate support personnel. The development and application of inferential sensors is easily transferable to other real-time hydrologic monitoring networks.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20165094","collaboration":"Greater Everglades Priority Ecosystems Science","usgsCitation":"Petkewich, M.D., Daamen, R.C., Roehl, E.A., and Conrads, P.A., 2016, Using inferential sensors for quality control of Everglades Depth Estimation Network water-level data: U.S. Geological Survey Scientific Investigations Report 2016–5094, 25 p., https://dx.doi.org/10.3133/sir20165094.","productDescription":"v, 25 p.","onlineOnly":"Y","ipdsId":"IP-066447","costCenters":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"links":[{"id":329015,"rank":3,"type":{"id":22,"text":"Related Work"},"url":"https://pubs.usgs.gov/publication/ofr20161116","text":"Open-File Report 2016–1116","description":"Open-File Report 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Assurance and Management (ADAM) Software</li><li>ADAM Software Architecture&nbsp;</li><li>Using ADAM Software to Process Everglades Depth Estimation Network Data&nbsp;</li><li>Summary&nbsp;</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2016-09-29","noUsgsAuthors":false,"publicationDate":"2016-09-29","publicationStatus":"PW","scienceBaseUri":"57ed3e3ee4b090825011d493","contributors":{"authors":[{"text":"Petkewich, Matthew D. 0000-0002-5749-6356 mdpetkew@usgs.gov","orcid":"https://orcid.org/0000-0002-5749-6356","contributorId":982,"corporation":false,"usgs":true,"family":"Petkewich","given":"Matthew","email":"mdpetkew@usgs.gov","middleInitial":"D.","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true},{"id":559,"text":"South Carolina Water Science Center","active":true,"usgs":true}],"preferred":true,"id":641330,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Daamen, 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,{"id":70176548,"text":"fs20163073 - 2016 - 2011 Souris River flood—Will it happen again?","interactions":[],"lastModifiedDate":"2017-10-12T19:51:53","indexId":"fs20163073","displayToPublicDate":"2016-09-29T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-3073","title":"2011 Souris River flood—Will it happen again?","docAbstract":"<p>The Souris River Basin is a 61,000 square kilometer basin in the provinces of Saskatchewan and Manitoba and the state of North Dakota. Record setting rains in May and June of 2011 led to record flooding with peak annual streamflow values (762 cubic meters per second [m<sup>3</sup>/s]) more than twice that of any previously recorded peak streamflow and more than five times the estimated 100 year postregulation streamflow (142 m<sup>3</sup>/s) at the U.S. Geological Survey (USGS) streamflow-gaging station above Minot, North Dakota. Upstream from Minot, N. Dak., the Souris River is regulated by three reservoirs in Saskatchewan (Rafferty, Boundary, and Alameda) and Lake Darling in North Dakota. During the 2011 flood, the city of Minot, N. Dak., experienced devastating damages with more than 4,000 homes flooded and 11,000 evacuated. As a result, the Souris River Basin Task Force recommended the U.S. Geological Survey (in cooperation with the North Dakota State Water Commission) develop a model for estimating the probabilities of future flooding and drought. The model that was developed took on four parts: (1) looking at past climate, (2) predicting future climate, (3) developing a streamflow model in response to certain climatic variables, and (4) combining future climate estimates with the streamflow model to predict future streamflow events. By taking into consideration historical climate record and trends in basin response to various climatic conditions, it was determined flood risk will remain high in the Souris River Basin until the wet climate state ends.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20163073","collaboration":"Prepared in cooperation with the North Dakota State Water Commission","usgsCitation":"Nustad, R.A., Kolars, K.A., Vecchia, A.V., and Ryberg, K.R., 2016, 2011 Souris River flood—Will it happen again?: U.S. Geological Survey Fact Sheet 2016–3073, 4 p., https://dx.doi.org/10.3133/fs20163073.","productDescription":"4 p.","startPage":"1","endPage":"4","numberOfPages":"4","onlineOnly":"Y","ipdsId":"IP-078012","costCenters":[{"id":478,"text":"North Dakota Water Science Center","active":true,"usgs":true},{"id":34685,"text":"Dakota Water Science 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,{"id":70176419,"text":"sir20165130 - 2016 - Altitudes and thicknesses of hydrogeologic units of the Ozark Plateaus aquifer system in Arkansas, Kansas, Missouri, and Oklahoma","interactions":[],"lastModifiedDate":"2017-03-10T13:41:29","indexId":"sir20165130","displayToPublicDate":"2016-09-29T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-5130","title":"Altitudes and thicknesses of hydrogeologic units of the Ozark Plateaus aquifer system in Arkansas, Kansas, Missouri, and Oklahoma","docAbstract":"<p>A hydrogeologic framework was constructed to represent the altitudes and thicknesses of hydrogeologic units within the Ozark Plateaus aquifer system as part of a regional groundwater-flow model supported by the U.S. Geological Survey Water Availability and Use Science Program. The Ozark Plateaus aquifer system study area is nearly 70,000 square miles and includes parts of Arkansas, Kansas, Missouri, and Oklahoma. Nine hydrogeologic units were selected for delineation within the aquifer system and include the Western Interior Plains confining system, the Springfield Plateau aquifer, the Ozark confining unit, the Ozark aquifer, which was divided into the upper, middle, and lower Ozark aquifers to better capture the spatial variation in the hydrologic properties, the St. Francois confining unit, the St. Francois aquifer, and the basement confining unit. Geophysical and well-cutting logs, along with lithologic descriptions by well drillers, were compiled and interpreted to create hydrologic altitudes for each unit. The final compiled dataset included more than 23,000 individual altitude points (excluding synthetic points) representing the nine hydrogeologic units within the Ozark Plateaus aquifer system.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20165130","collaboration":"Water Availability and Use Science Program","usgsCitation":"Westerman, D.A., Gillip, J.A., Richards, J.M., Hays, P.D., Clark, B.R., 2016, Altitudes and thicknesses of hydrogeologic units of the Ozark Plateaus aquifer system in Arkansas, Kansas, Missouri, and Oklahoma: U.S. Geological Survey Scientific Investigations Report 2016–5130, 32 p., https://dx.doi.org/10.3133/sir20165130. 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Despite advances in scientific understanding of cyanobacteria and associated compounds, many unanswered questions remain about occurrence, environmental triggers for toxicity, and the ability to predict the timing, duration, and toxicity of CyanoHABs. U.S. Geological Survey (USGS) scientists are leading a diverse range of studies to address CyanoHAB issues in water bodies throughout the United States, using a combination of traditional methods and emerging technologies, and in collaboration with numerous partners. 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