{"pageNumber":"1041","pageRowStart":"26000","pageSize":"25","recordCount":184717,"records":[{"id":70179578,"text":"70179578 - 2016 - Introduction: Special issue on advances in topobathymetric mapping, models, and applications","interactions":[],"lastModifiedDate":"2017-01-17T19:01:51","indexId":"70179578","displayToPublicDate":"2017-01-05T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2220,"text":"Journal of Coastal Research","active":true,"publicationSubtype":{"id":10}},"title":"Introduction: Special issue on advances in topobathymetric mapping, models, and applications","docAbstract":"<p><span>Detailed knowledge of near-shore topography and bathymetry is required for many geospatial data applications in the coastal environment. New data sources and processing methods are facilitating development of seamless, regional-scale topobathymetric digital elevation models. These elevation models integrate disparate multi-sensor, multi-temporal topographic and bathymetric datasets to provide a coherent base layer for coastal science applications such as wetlands mapping and monitoring, sea-level rise assessment, benthic habitat mapping, erosion monitoring, and storm impact assessment. The focus of this special issue is on recent advances in the source data, data processing and integration methods, and applications of topobathymetric datasets.</span></p>","language":"English","publisher":"Coastal Education and Research Foundation","doi":"10.2112/SI76-001","usgsCitation":"Gesch, D.B., Brock, J., Parrish, C.E., Rogers, J.N., and Wright, C., 2016, Introduction: Special issue on advances in topobathymetric mapping, models, and applications: Journal of Coastal Research, v. Special Issue 76, p. 1-3, https://doi.org/10.2112/SI76-001.","productDescription":"3 p.","startPage":"1","endPage":"3","ipdsId":"IP-079356","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":470278,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://www.bioone.org/doi/10.2112/SI76-001","text":"External Repository"},{"id":332922,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"Special Issue 76","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"586f69a8e4b01a71ba0bc909","contributors":{"authors":[{"text":"Gesch, Dean B. 0000-0002-8992-4933 gesch@usgs.gov","orcid":"https://orcid.org/0000-0002-8992-4933","contributorId":2956,"corporation":false,"usgs":true,"family":"Gesch","given":"Dean","email":"gesch@usgs.gov","middleInitial":"B.","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true},{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":657801,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Brock, John 0000-0002-5289-9332 jbrock@usgs.gov","orcid":"https://orcid.org/0000-0002-5289-9332","contributorId":2261,"corporation":false,"usgs":true,"family":"Brock","given":"John","email":"jbrock@usgs.gov","affiliations":[{"id":5061,"text":"National Cooperative Geologic Mapping and Landslide Hazards","active":true,"usgs":true}],"preferred":true,"id":657802,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Parrish, Christopher E.","contributorId":178021,"corporation":false,"usgs":false,"family":"Parrish","given":"Christopher","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":657803,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Rogers, Jeffrey N.","contributorId":178022,"corporation":false,"usgs":false,"family":"Rogers","given":"Jeffrey","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":657804,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Wright, C. Wayne wwright@usgs.gov","contributorId":178023,"corporation":false,"usgs":true,"family":"Wright","given":"C. Wayne","email":"wwright@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":false,"id":657805,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70179603,"text":"70179603 - 2016 - Genetic structure of faucet snail, <i>Bithynia tentaculata</i> populations in North Americal based on microsattelite markers","interactions":[],"lastModifiedDate":"2020-12-17T21:06:23.061609","indexId":"70179603","displayToPublicDate":"2017-01-05T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5254,"text":"Freshwater Mollusk Biology and Conservation","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Genetic structure of faucet snail, Bithynia tentaculata populations in North Americal based on microsattelite markers","title":"Genetic structure of faucet snail, <i>Bithynia tentaculata</i> populations in North Americal based on microsattelite markers","docAbstract":"<p><i>Bithynia tentaculata</i> is believed to have been extirpated from North America during the last glacial maximum. It was reintroduced into North America via the Great Lakes basin in the 1800’s and has recently been expanding its geographic range. This snail serves as intermediate host for three trematodes that cause extensive recurring morbidity and mortality events in migratory water birds along the Mississippi River. Using twelve microsatellite loci for ~200 individual snails from 11 populations in North America and Europe, we examined one of the three major geographic regions from which founding populations into the Great Lakes typically originate. Our data supports a single recolonization of North America into the Great Lakes Basin followed by subsequent introduction events from the Great Lakes to other large watersheds in North America. However, additional watersheds in Europe require sampling to confirm this result. No populations with genetic signatures indicative of North American glacial relics were found. The initial invasion of North America was likely not from the Ponto-Caspian basin, the usual source of freshwater invasive species to the Laurentian Great Lakes.</p>","language":"English","publisher":"Freshwater Mollusc Conservation Society","doi":"10.31931/fmbc.v19i2.2016.56-68","usgsCitation":"Perez, K.E., Werren, R.L., Lynum, C.A., Hartman, L.A., Majoros, G., and Cole, R.A., 2016, Genetic structure of faucet snail, <i>Bithynia tentaculata</i> populations in North Americal based on microsattelite markers: Freshwater Mollusk Biology and Conservation, v. 19, no. 2, p. 56-68, https://doi.org/10.31931/fmbc.v19i2.2016.56-68.","productDescription":"13 p.","startPage":"56","endPage":"68","ipdsId":"IP-071347","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":461984,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.31931/fmbc.v19i2.2016.56-68","text":"Publisher Index Page"},{"id":332929,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"19","issue":"2","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"586f69a6e4b01a71ba0bc903","contributors":{"authors":[{"text":"Perez, Kathryn E.","contributorId":14102,"corporation":false,"usgs":true,"family":"Perez","given":"Kathryn","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":657836,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Werren, Rebecca L.","contributorId":178043,"corporation":false,"usgs":false,"family":"Werren","given":"Rebecca","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":657837,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Lynum, Christopher A.","contributorId":178044,"corporation":false,"usgs":false,"family":"Lynum","given":"Christopher","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":657838,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hartman, Levi A.","contributorId":178045,"corporation":false,"usgs":false,"family":"Hartman","given":"Levi","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":657839,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Majoros, Gabor","contributorId":178046,"corporation":false,"usgs":false,"family":"Majoros","given":"Gabor","email":"","affiliations":[],"preferred":false,"id":657840,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Cole, Rebecca A. 0000-0003-2923-1622 rcole@usgs.gov","orcid":"https://orcid.org/0000-0003-2923-1622","contributorId":2873,"corporation":false,"usgs":true,"family":"Cole","given":"Rebecca","email":"rcole@usgs.gov","middleInitial":"A.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":657841,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70179602,"text":"70179602 - 2016 - Bald Eagle nestling mortality associated with <i>Argas radiatus</i> and <i>Argas ricei</i> tick infestation and successful management with nest removal in Arizona, USA","interactions":[],"lastModifiedDate":"2018-08-06T13:09:46","indexId":"70179602","displayToPublicDate":"2017-01-05T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2507,"text":"Journal of Wildlife Diseases","active":true,"publicationSubtype":{"id":10}},"title":"Bald Eagle nestling mortality associated with <i>Argas radiatus</i> and <i>Argas ricei</i> tick infestation and successful management with nest removal in Arizona, USA","docAbstract":"<p><span>Eight Bald Eagle (<i>Haliaeetus leucocephalus</i>) nestlings heavily infested with larval ticks were found in or under a nest near the confluence of the Verde and Salt rivers in Arizona in 2009-11. The 8-12-wk-old nestlings were slow to respond to stimuli and exhibited generalized muscle weakness or paresis of the pelvic limbs. Numerous cutaneous and subcutaneous hemorrhages were associated with sites of tick attachment. Ticks were identified as <i>Argas radiatus</i> and <i>Argas ricei</i>. Treatment with acaricides and infection with West Nile virus (WNV) may have confounded the clinical presentation in 2009 and 2010. However, WNV-negative birds exhibited similar signs in 2011. One nestling recovered from paresis within 36 h after the removal of all adult and larval ticks (&gt;350) and was released within 3 wk. The signs present in the heavily infested Bald Eagle nestlings resembled signs associated with tick paralysis, a neurotoxin-mediated paralytic syndrome described in mammals, reptiles, and wild birds (though not eagles). Removal of the infested nest and construction of a nest platform in a different tree was necessary to break the cycle of infection. The original nesting pair constructed a new nest on the man-made platform and successfully fledged two Bald Eagles in 2012.</span></p>","language":"English","publisher":"Wildlife Disease Association","publisherLocation":"Ames, IA","doi":"10.7589/2015-10-271","usgsCitation":"Justice-Allen, A., Orr, K., Schuler, K.L., McCarty, K., Jacobson, K., and Meteyer, C.U., 2016, Bald Eagle nestling mortality associated with <i>Argas radiatus</i> and <i>Argas ricei</i> tick infestation and successful management with nest removal in Arizona, USA: Journal of Wildlife Diseases, v. 52, no. 4, p. 940-944, https://doi.org/10.7589/2015-10-271.","productDescription":"5 p.","startPage":"940","endPage":"944","ipdsId":"IP-069808","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true},{"id":34983,"text":"Contaminant Biology Program","active":true,"usgs":true}],"links":[{"id":332930,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arizona","volume":"52","issue":"4","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"586f69a0e4b01a71ba0bc8f9","contributors":{"authors":[{"text":"Justice-Allen, Anne","contributorId":178039,"corporation":false,"usgs":false,"family":"Justice-Allen","given":"Anne","affiliations":[],"preferred":false,"id":657831,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Orr, Kathy","contributorId":178040,"corporation":false,"usgs":false,"family":"Orr","given":"Kathy","email":"","affiliations":[],"preferred":false,"id":657832,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schuler, Krysten L.","contributorId":176255,"corporation":false,"usgs":false,"family":"Schuler","given":"Krysten","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":657835,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McCarty, Kyle","contributorId":178041,"corporation":false,"usgs":false,"family":"McCarty","given":"Kyle","affiliations":[],"preferred":false,"id":657833,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Jacobson, Kenneth","contributorId":178042,"corporation":false,"usgs":false,"family":"Jacobson","given":"Kenneth","affiliations":[],"preferred":false,"id":657834,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Meteyer, Carol U. 0000-0002-4007-3410 cmeteyer@usgs.gov","orcid":"https://orcid.org/0000-0002-4007-3410","contributorId":127748,"corporation":false,"usgs":true,"family":"Meteyer","given":"Carol","email":"cmeteyer@usgs.gov","middleInitial":"U.","affiliations":[{"id":5056,"text":"Office of the AD Energy and Minerals, and Environmental Health","active":true,"usgs":true},{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true},{"id":34983,"text":"Contaminant Biology Program","active":true,"usgs":true}],"preferred":true,"id":657830,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70179581,"text":"70179581 - 2016 - Final Laurentide ice-sheet deglaciation and Holocene climate-sea level change","interactions":[],"lastModifiedDate":"2017-01-05T10:01:22","indexId":"70179581","displayToPublicDate":"2017-01-05T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3219,"text":"Quaternary Science Reviews","active":true,"publicationSubtype":{"id":10}},"title":"Final Laurentide ice-sheet deglaciation and Holocene climate-sea level change","docAbstract":"<p><span>Despite elevated summer insolation forcing during the early Holocene, global ice sheets retained nearly half of their volume from the Last Glacial Maximum, as indicated by deglacial records of global mean sea level (GMSL). Partitioning the GMSL rise among potential sources requires accurate dating of ice-sheet extent to estimate ice-sheet volume. Here, we date the final retreat of the Laurentide Ice Sheet with </span><sup>10</sup><span>Be surface exposure ages for the Labrador Dome, the largest of the remnant Laurentide ice domes during the Holocene. We show that the Labrador Dome deposited moraines during North Atlantic cold events at ∼10.3&nbsp;ka, 9.3&nbsp;ka and 8.2&nbsp;ka, suggesting that these regional climate events helped stabilize the retreating Labrador Dome in the early Holocene. After Hudson Bay became seasonally ice free at ∼8.2&nbsp;ka, the majority of Laurentide ice-sheet melted abruptly within a few centuries. We demonstrate through high-resolution regional climate model simulations that the thermal properties of a seasonally ice-free Hudson Bay would have increased Laurentide ice-sheet ablation and thus contributed to the subsequent rapid Labrador Dome retreat. Finally, our new </span><sup>10</sup><span>Be chronology indicates full Laurentide ice-sheet had completely deglaciated by 6.7&nbsp;±&nbsp;0.4&nbsp;ka, which re quires that Antarctic ice sheets contributed 3.6–6.5&nbsp;m to GMSL rise since 6.3–7.1&nbsp;ka.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.quascirev.2016.09.014","usgsCitation":"Ullman, D.J., Carlson, A.E., Hostetler, S.W., Clark, P.U., Cuzzone, J., Milne, G.A., Winsor, K., and Caffee, M.A., 2016, Final Laurentide ice-sheet deglaciation and Holocene climate-sea level change: Quaternary Science Reviews, v. 152, p. 49-59, https://doi.org/10.1016/j.quascirev.2016.09.014.","productDescription":"11 p.","startPage":"49","endPage":"59","ipdsId":"IP-072855","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"links":[{"id":470280,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.quascirev.2016.09.014","text":"Publisher Index Page"},{"id":332921,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"152","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"586f69a8e4b01a71ba0bc907","contributors":{"authors":[{"text":"Ullman, David J.","contributorId":178024,"corporation":false,"usgs":false,"family":"Ullman","given":"David","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":657808,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Carlson, Anders E.","contributorId":178025,"corporation":false,"usgs":false,"family":"Carlson","given":"Anders","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":657809,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hostetler, Steven W. 0000-0003-2272-8302 swhostet@usgs.gov","orcid":"https://orcid.org/0000-0003-2272-8302","contributorId":3249,"corporation":false,"usgs":true,"family":"Hostetler","given":"Steven","email":"swhostet@usgs.gov","middleInitial":"W.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":657807,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Clark, Peter U.","contributorId":178026,"corporation":false,"usgs":false,"family":"Clark","given":"Peter","email":"","middleInitial":"U.","affiliations":[],"preferred":false,"id":657810,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Cuzzone, Joshua","contributorId":178027,"corporation":false,"usgs":false,"family":"Cuzzone","given":"Joshua","email":"","affiliations":[],"preferred":false,"id":657811,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Milne, Glenn A.","contributorId":178028,"corporation":false,"usgs":false,"family":"Milne","given":"Glenn","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":657812,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Winsor, Kelsey","contributorId":178029,"corporation":false,"usgs":false,"family":"Winsor","given":"Kelsey","email":"","affiliations":[],"preferred":false,"id":657813,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Caffee, Marc A.","contributorId":36048,"corporation":false,"usgs":false,"family":"Caffee","given":"Marc","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":657824,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70179582,"text":"70179582 - 2016 - Implementation and evaluation of a monthly water balance model over the US on an 800 m grid","interactions":[],"lastModifiedDate":"2017-01-19T13:42:38","indexId":"70179582","displayToPublicDate":"2017-01-05T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3722,"text":"Water Resources Research","onlineIssn":"1944-7973","printIssn":"0043-1397","active":true,"publicationSubtype":{"id":10}},"title":"Implementation and evaluation of a monthly water balance model over the US on an 800 m grid","docAbstract":"<p><span>We simulate the 1950–2010 water balance for the conterminous U.S. (CONUS) with a monthly water balance model (MWBM) using the 800 m Parameter-elevation Regression on Independent Slopes Model (PRISM) data set as model input. We employed observed snow and streamflow data sets to guide modification of the snow and potential evapotranspiration components in the default model and to evaluate model performance. Based on various metrics and sensitivity tests, the modified model yields reasonably good simulations of seasonal snowpack in the West (range of bias of ±50 mm at 68% of 713 SNOTEL sites), the gradients and magnitudes of actual evapotranspiration, and runoff (median correlation of 0.83 and median Nash-Sutcliff efficiency of 0.6 between simulated and observed annual time series at 1427 USGS gage sites). The model generally performs well along the Pacific Coast, the high elevations of the Basin and Range and over the Midwest and East, but not as well over the dry areas of the Southwest and upper Plains regions due, in part, to the apportioning of direct versus delayed runoff. Sensitivity testing and application of the MWBM to simulate the future water balance at four National Parks when driven by 30 climate models from the Climate Model Intercomparison Program Phase 5 (CMIP5) demonstrate that the model is useful for evaluating first-order, climate driven hydrologic change on monthly and annual time scales.</span></p>","language":"English","publisher":"AGU Publications","doi":"10.1002/2016WR018665","usgsCitation":"Hostetler, S.W., and Alder, J.R., 2016, Implementation and evaluation of a monthly water balance model over the US on an 800 m grid: Water Resources Research, v. 52, no. 12, p. 9600-9620, https://doi.org/10.1002/2016WR018665.","productDescription":"20 p.","startPage":"9600","endPage":"9620","ipdsId":"IP-072570","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"links":[{"id":332920,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"52","issue":"12","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-12-27","publicationStatus":"PW","scienceBaseUri":"586f69a3e4b01a71ba0bc8fd","contributors":{"authors":[{"text":"Hostetler, Steven W. 0000-0003-2272-8302 swhostet@usgs.gov","orcid":"https://orcid.org/0000-0003-2272-8302","contributorId":3249,"corporation":false,"usgs":true,"family":"Hostetler","given":"Steven","email":"swhostet@usgs.gov","middleInitial":"W.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":657814,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Alder, Jay R. 0000-0003-2378-2853 jalder@usgs.gov","orcid":"https://orcid.org/0000-0003-2378-2853","contributorId":5118,"corporation":false,"usgs":true,"family":"Alder","given":"Jay","email":"jalder@usgs.gov","middleInitial":"R.","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":657815,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70179502,"text":"70179502 - 2016 - VNTR diversity in <i>Yersinia pestis</i> isolates from an animal challenge study reveals the potential for <i>in vitro</i> mutations during laboratory cultivation","interactions":[],"lastModifiedDate":"2017-01-04T10:00:27","indexId":"70179502","displayToPublicDate":"2017-01-04T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1988,"text":"Infection, Genetics and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"VNTR diversity in <i>Yersinia pestis</i> isolates from an animal challenge study reveals the potential for <i>in vitro</i> mutations during laboratory cultivation","docAbstract":"<p><span>Underlying mutation rates and other evolutionary forces shape the population structure of bacteria in nature. Although easily overlooked, similar forces are at work in the laboratory and may influence observed mutations. Here, we investigated tissue samples and </span><i>Yersinia pestis</i><span> isolates from a rodent laboratory challenge with strain CO92 using whole genome sequencing and multi-locus variable-number tandem repeat (VNTR) analysis (MLVA). We identified six VNTR mutations that were found to have occurred </span><i>in vitro</i><span> during laboratory cultivation rather than </span><i>in vivo</i><span> during the rodent challenge. In contrast, no single nucleotide polymorphism (SNP) mutations were observed, either </span><i>in vivo</i><span> or </span><i>in vitro</i><span>. These results were consistent with previously published mutation rates and the calculated number of </span><i>Y. pestis</i><span> generations that occurred during the </span><i>in vitro versus</i><span> the </span><i>in vivo</i><span> portions of the experiment. When genotyping disease outbreaks, the potential for </span><i>in vitro</i><span> mutations should be considered, particularly when highly variable genetic markers such as VNTRs are used.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.meegid.2016.09.019","usgsCitation":"Vogler, A.J., Nottingham, R., Busch, J.D., Sahl, J.W., Shuey, M.M., Foster, J.T., Schupp, J.M., Smith, S., Rocke, T.E., Klein, P., and Wagner, D.M., 2016, VNTR diversity in <i>Yersinia pestis</i> isolates from an animal challenge study reveals the potential for <i>in vitro</i> mutations during laboratory cultivation: Infection, Genetics and Evolution, v. 45, p. 297-302, https://doi.org/10.1016/j.meegid.2016.09.019.","productDescription":"6 p.","startPage":"297","endPage":"302","ipdsId":"IP-079769","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":332810,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"45","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"586e1820e4b0f5ce109fcad7","contributors":{"authors":[{"text":"Vogler, Amy J.","contributorId":177901,"corporation":false,"usgs":false,"family":"Vogler","given":"Amy","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":657467,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Nottingham, Roxanne","contributorId":177902,"corporation":false,"usgs":false,"family":"Nottingham","given":"Roxanne","email":"","affiliations":[],"preferred":false,"id":657468,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Busch, Joseph D.","contributorId":44052,"corporation":false,"usgs":false,"family":"Busch","given":"Joseph","email":"","middleInitial":"D.","affiliations":[{"id":12698,"text":"Northern Arizona University","active":true,"usgs":false}],"preferred":false,"id":657469,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sahl, Jason W.","contributorId":177903,"corporation":false,"usgs":false,"family":"Sahl","given":"Jason","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":657470,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Shuey, Megan M.","contributorId":177904,"corporation":false,"usgs":false,"family":"Shuey","given":"Megan","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":657471,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Foster, Jeffrey T.","contributorId":177905,"corporation":false,"usgs":false,"family":"Foster","given":"Jeffrey","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":657472,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Schupp, James M.","contributorId":177906,"corporation":false,"usgs":false,"family":"Schupp","given":"James","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":657473,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Smith, Susan 0000-0001-6478-5028 susansmith@usgs.gov","orcid":"https://orcid.org/0000-0001-6478-5028","contributorId":139497,"corporation":false,"usgs":true,"family":"Smith","given":"Susan","email":"susansmith@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":false,"id":657474,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Rocke, Tonie E. 0000-0003-3933-1563 trocke@usgs.gov","orcid":"https://orcid.org/0000-0003-3933-1563","contributorId":2665,"corporation":false,"usgs":true,"family":"Rocke","given":"Tonie","email":"trocke@usgs.gov","middleInitial":"E.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":657466,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Klein, Paul","contributorId":177907,"corporation":false,"usgs":false,"family":"Klein","given":"Paul","affiliations":[],"preferred":false,"id":657475,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Wagner, David M.","contributorId":8737,"corporation":false,"usgs":false,"family":"Wagner","given":"David","email":"","middleInitial":"M.","affiliations":[{"id":12698,"text":"Northern Arizona University","active":true,"usgs":false}],"preferred":false,"id":657476,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70161757,"text":"70161757 - 2016 - 2.2.2 Erythrocytic inclusion body syndrome","interactions":[],"lastModifiedDate":"2017-10-25T09:48:10","indexId":"70161757","displayToPublicDate":"2017-01-02T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"2.2.2 Erythrocytic inclusion body syndrome","docAbstract":"<p>No abstract available.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Blue book: Suggested procedures for the detection and identification of certain finfish and shellfish pathogens","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","usgsCitation":"Winton, J., and Purcell, M., 2016, 2.2.2 Erythrocytic inclusion body syndrome, chap. <i>of</i> Blue book: Suggested procedures for the detection and identification of certain finfish and shellfish pathogens, 6 p.","productDescription":"6 p.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-075318","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":347237,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":347236,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://units.fisheries.org/fhs/fish-health-section-blue-book-2016/"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"59f05123e4b0220bbd9a1da9","contributors":{"authors":[{"text":"Winton, James R. jwinton@usgs.gov","contributorId":127569,"corporation":false,"usgs":true,"family":"Winton","given":"James R.","email":"jwinton@usgs.gov","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":false,"id":587675,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Purcell, Maureen K. mpurcell@usgs.gov","contributorId":3061,"corporation":false,"usgs":true,"family":"Purcell","given":"Maureen K.","email":"mpurcell@usgs.gov","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":false,"id":715153,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70190859,"text":"70190859 - 2016 - Measuring distance “as the horse runs”: Cross-scale comparison of terrain-based metrics","interactions":[],"lastModifiedDate":"2017-09-20T10:39:26","indexId":"70190859","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Measuring distance “as the horse runs”: Cross-scale comparison of terrain-based metrics","docAbstract":"<p>Distance metrics play significant roles in spatial modeling tasks, such as flood inundation (Tucker and Hancock 2010), stream extraction (Stanislawski et al. 2015), power line routing (Kiessling et al. 2003) and analysis of surface pollutants such as nitrogen (Harms et al. 2009). Avalanche risk is based on slope, aspect, and curvature, all directly computed from distance metrics (Gutiérrez 2012). Distance metrics anchor variogram analysis, kernel estimation, and spatial interpolation (Cressie 1993). Several approaches are employed to measure distance. Planar metrics measure straight line distance between two points (“as the crow flies”) and are simple and intuitive, but suffer from uncertainties. Planar metrics assume that Digital Elevation Model (DEM) pixels are rigid and flat, as tiny facets of ceramic tile approximating a continuous terrain surface. In truth, terrain can bend, twist and undulate within each pixel.</p><p>Work with Light Detection and Ranging (lidar) data or High Resolution Topography to achieve precise measurements present challenges, as filtering can eliminate or distort significant features (Passalacqua et al. 2015). The current availability of lidar data is far from comprehensive in developed nations, and non-existent in many rural and undeveloped regions. Notwithstanding computational advances, distance estimation on DEMs has never been systematically assessed, due to assumptions that improvements are so small that surface adjustment is unwarranted. For individual pixels inaccuracies may be small, but additive effects can propagate dramatically, especially in regional models (e.g., disaster evacuation) or global models (e.g., sea level rise) where pixels span dozens to hundreds of kilometers (Usery et al 2003). Such models are increasingly common, lending compelling reasons to understand shortcomings in the use of planar distance metrics. Researchers have studied curvature-based terrain modeling. Jenny et al. (2011) use curvature to generate hierarchical terrain models. Schneider (2001) creates a ‘plausibility’ metric for DEM-extracted structure lines. d’Oleire- Oltmanns et al. (2014) adopt object-based image processing as an alternative to working with DEMs; acknowledging the pre-processing involved in converting terrain into an object model is computationally intensive, and likely infeasible for some applications.</p><p>This paper compares planar distance with surface adjusted distance, evolving from distance “as the crow flies” to distance “as the horse runs”. Several methods are compared for DEMs spanning a range of resolutions for the study area and validated against a 3 meter (m) lidar data benchmark. Error magnitudes vary with pixel size and with the method of surface adjustment. The rate of error increase may also vary with landscape type (terrain roughness, precipitation regimes and land settlement patterns). Cross-scale analysis for a single study area is reported here. Additional areas will be presented at the conference.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkSubtype":{"id":12,"text":"Conference publication"},"language":"English","publisher":"International Conference on GIScience: Short Paper Proceedings","doi":"10.21433/B3118rh987cz","usgsCitation":"Buttenfield, B., Ghandehari, M., Leyk, S., Stanislawski, L.V., Brantley, M.E., and Qiang, Y., 2016, Measuring distance “as the horse runs”: Cross-scale comparison of terrain-based metrics, p. 37-40, https://doi.org/10.21433/B3118rh987cz.","productDescription":"4 p.","startPage":"37","endPage":"40","ipdsId":"IP-078741","costCenters":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"links":[{"id":470295,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.21433/b3118rh987cz","text":"Publisher Index Page"},{"id":345882,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"59c22cb4e4b091459a61b73d","contributors":{"authors":[{"text":"Buttenfield, Barbara P.","contributorId":145538,"corporation":false,"usgs":false,"family":"Buttenfield","given":"Barbara P.","affiliations":[{"id":16144,"text":"University of Colorado-Boulder","active":true,"usgs":false}],"preferred":false,"id":710649,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ghandehari, M","contributorId":196539,"corporation":false,"usgs":false,"family":"Ghandehari","given":"M","email":"","affiliations":[],"preferred":false,"id":710651,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Leyk, S","contributorId":196538,"corporation":false,"usgs":false,"family":"Leyk","given":"S","email":"","affiliations":[],"preferred":false,"id":710650,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stanislawski, Larry V. 0000-0002-9437-0576 lstan@usgs.gov","orcid":"https://orcid.org/0000-0002-9437-0576","contributorId":3386,"corporation":false,"usgs":true,"family":"Stanislawski","given":"Larry","email":"lstan@usgs.gov","middleInitial":"V.","affiliations":[{"id":404,"text":"NGTOC Rolla","active":true,"usgs":true},{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"preferred":true,"id":710648,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Brantley, M E","contributorId":196540,"corporation":false,"usgs":false,"family":"Brantley","given":"M","email":"","middleInitial":"E","affiliations":[],"preferred":false,"id":710652,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Qiang, Yi","contributorId":196567,"corporation":false,"usgs":false,"family":"Qiang","given":"Yi","email":"","affiliations":[],"preferred":false,"id":710777,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70190605,"text":"70190605 - 2016 - A Tour de Force by Hawaii's invasive mammals: establishment, takeover, ecosystem restoration through eradication","interactions":[],"lastModifiedDate":"2018-01-04T08:32:28","indexId":"70190605","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"A Tour de Force by Hawaii's invasive mammals: establishment, takeover, ecosystem restoration through eradication","docAbstract":"Invasive mammals, large and small, have irreversibly altered Hawaii's ecosystems in numerous cases through unnatural herbivory, predation, and the transmission of zoonotic diseases, thereby causing the disproportionate extinction of flora and fauna that occur nowhere else on Earth. The control and eradication of invasive mammals is the single most expensive management activity necessary for restoring ecological integrity to many natural areas of Hawai'i and other Pacific Islands, and has already\nadvanced the restoration of native biota. Science applications supporting management efforts have been shaped by longstanding collaborative federal research programs over the past four decades. Consequently, feral goats have been removed from > l ,3 58 km2, and feral pigs have been removed from >723 km2 of lands in Hawai'i, bringing about the gradual recovery of forest ecosystems. The exclusion of other non-native ungulates and invasive mammals is now being undertaken with more sophisticated control techniques and fences. New fence designs are now capable of excluding feral cats from large areas to protect endangered native waterfowl and\nnesting seabirds. Rodenticides that have been tested and registered for hand and aerial broadcast in Hawai'i have been used to eradicate rats from small offshore islands to protect nesting seabirds and are now being applied to montane environment of larger islands to protect forest birds. Forward-looking infrared radar is also being applied to locate cryptic wild ungulates that were more recently introduced to some islands. All invasive mammals have been eradicated from some smaller islands, resulting in the restoration of some ecosystem processes such as natural forest regeneration, but changes in other processes such as fire regimes and nutrient cycling remain more difficult to reverse at larger landscape scales. It may soon be possible to manage areas on larger islands to be free of invasive mammals at least during seasonally important periods for native species, but at the same time, new mammal introductions continue to occur.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"27th Vertebrate Pest Conference","largerWorkSubtype":{"id":12,"text":"Conference publication"},"language":"English","publisher":"University of California, Davis","usgsCitation":"Hess, S.C., 2016, A Tour de Force by Hawaii's invasive mammals: establishment, takeover, ecosystem restoration through eradication, <i>in</i> 27th Vertebrate Pest Conference, p. 361-367.","productDescription":"7 p.","startPage":"361","endPage":"367","ipdsId":"IP-080033","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":345610,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":345603,"type":{"id":15,"text":"Index Page"},"url":"https://www.vpconference.org/Proceedings_of_the_Vertebrate_Pest_Conference/"}],"country":"United States","state":"Hawaii","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"59b76f7de4b08b1644ddfb06","contributors":{"authors":[{"text":"Hess, Steve C. 0000-0001-6403-9922 shess@usgs.gov","orcid":"https://orcid.org/0000-0001-6403-9922","contributorId":150366,"corporation":false,"usgs":true,"family":"Hess","given":"Steve","email":"shess@usgs.gov","middleInitial":"C.","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true},{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":true,"id":709969,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70179757,"text":"70179757 - 2016 - Prospects and limitations of citizen science in invasive species management: A case study with Burmese pythons in Everglades National Park","interactions":[],"lastModifiedDate":"2017-01-17T12:32:07","indexId":"70179757","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3444,"text":"Southeastern Naturalist","active":true,"publicationSubtype":{"id":10}},"title":"Prospects and limitations of citizen science in invasive species management: A case study with Burmese pythons in Everglades National Park","docAbstract":"Citizen-science programs have the potential to contribute to the management of invasive species, including Python molurus bivittatus (Burmese Python) in Florida. We characterized citizen-science–generated Burmese Python information from Everglades National Park (ENP) to explore how citizen science may be useful in this effort. As an initial step, we compiled and summarized records of Burmese Python observations and removals collected by both professional and citizen scientists in ENP during 2000–2014 and found many patterns of possible significance, including changes in annual observations and in demographic composition after a cold event. These patterns are difficult to confidently interpret because the records lack search-effort information, however, and differences among years may result from differences in search effort. We began collecting search-effort information in 2014 by leveraging an ongoing citizen-science program in ENP. Program participation was generally low, with most authorized participants in 2014 not searching for the snakes at all. We discuss the possible explanations for low participation, especially how the low likelihood of observing pythons weakens incentives to search. The monthly rate of Burmese Python observations for 2014 averaged ~1 observation for every 8 h of searching, but during several months, the rate was 1 python per >40 h of searching. These low observation-rates are a natural outcome of the snakes’ low detectability—few Burmese Pythons are likely to be observed even if many are present. The general inaccessibility of the southern Florida landscape also severely limits the effectiveness of using visual searches to find and remove pythons for the purposes of population control. Instead, and despite the difficulties in incentivizing voluntary participation, the value of citizen-science efforts in the management of the Burmese Python population is in collecting search-effort information.","language":"English","publisher":"Eagle Hill Institute","doi":"10.1656/058.015.sp806","usgsCitation":"Falk, B., Snow, R.W., and Reed, R., 2016, Prospects and limitations of citizen science in invasive species management: A case study with Burmese pythons in Everglades National Park: Southeastern Naturalist, v. 15, no. sp8, p. 89-102, https://doi.org/10.1656/058.015.sp806.","productDescription":"14 p.","startPage":"89","endPage":"102","ipdsId":"IP-070283","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":333252,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"15","issue":"sp8","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"587f3bf9e4b0d96de256453d","contributors":{"authors":[{"text":"Falk, Bryan 0000-0002-9690-5626 bfalk@usgs.gov","orcid":"https://orcid.org/0000-0002-9690-5626","contributorId":150075,"corporation":false,"usgs":true,"family":"Falk","given":"Bryan","email":"bfalk@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":658563,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Snow, Raymond W.","contributorId":178337,"corporation":false,"usgs":false,"family":"Snow","given":"Raymond","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":658564,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Reed, Robert 0000-0001-8349-6168 reedr@usgs.gov","orcid":"https://orcid.org/0000-0001-8349-6168","contributorId":152301,"corporation":false,"usgs":true,"family":"Reed","given":"Robert","email":"reedr@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":658565,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70180258,"text":"70180258 - 2016 - Crustal permeability","interactions":[],"lastModifiedDate":"2017-02-13T14:01:40","indexId":"70180258","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":4,"text":"Book"},"publicationSubtype":{"id":15,"text":"Monograph"},"title":"Crustal permeability","docAbstract":"<p><span>Permeability is the primary control on fluid flow in the Earth’s crust and is key to a surprisingly wide range of geological processes, because it controls the advection of heat and solutes and the generation of anomalous pore pressures.&nbsp; The practical importance of permeability – and the potential for large, dynamic changes in permeability – is highlighted by ongoing issues associated with hydraulic fracturing for hydrocarbon production (“fracking”), enhanced geothermal systems, and geologic carbon sequestration.&nbsp; Although there are thousands of research papers on crustal permeability, this is the first book-length treatment.&nbsp; This book bridges the historical dichotomy between the hydrogeologic perspective of permeability as a static material property and the perspective of other Earth scientists who have long recognized permeability as a dynamic parameter that changes in response to tectonism, fluid production, and geochemical reactions.&nbsp;</span></p>","language":"English","publisher":"Wiley","isbn":"978-1-119-16656-6","usgsCitation":"2016, Crustal permeability, 472 p.","productDescription":"472 p.","ipdsId":"IP-069562","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":29789,"text":"John Wesley Powell Center for Analysis and Synthesis","active":true,"usgs":true}],"links":[{"id":334072,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":334071,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://www.wiley.com/WileyCDA/WileyTitle/productCd-111916656X.html"}],"publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"588b1977e4b0ad67323f97e0","contributors":{"editors":[{"text":"Gleeson, Tom","contributorId":42694,"corporation":false,"usgs":false,"family":"Gleeson","given":"Tom","affiliations":[{"id":6646,"text":"McGill University","active":true,"usgs":false}],"preferred":false,"id":661048,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Ingebritsen, Steven E. 0000-0001-6917-9369 seingebr@usgs.gov","orcid":"https://orcid.org/0000-0001-6917-9369","contributorId":818,"corporation":false,"usgs":true,"family":"Ingebritsen","given":"Steven","email":"seingebr@usgs.gov","middleInitial":"E.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":661049,"contributorType":{"id":2,"text":"Editors"},"rank":2}]}}
,{"id":70179208,"text":"70179208 - 2016 - Aging and sexing guide to the forest birds of Hawai‘i Island","interactions":[],"lastModifiedDate":"2018-01-04T12:31:12","indexId":"70179208","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":4,"text":"Other Government Series"},"seriesTitle":{"id":295,"text":"Technical Report","active":false,"publicationSubtype":{"id":4}},"seriesNumber":"HCSU-079","title":"Aging and sexing guide to the forest birds of Hawai‘i Island","docAbstract":"<p><span>We banded birds in Hakalau Forest National Wildlife Refuge from 2012 to 2016, collecting photographs of birds and making detailed observations on coloration, morphology, and molting patterns. While we believe the criteria in this guide are applicable to forest birds across Hawai’i Island, as well as on other Hawaiian islands for ‘Apapane, ‘I‘iwi, and Hawai‘i ‘Amakihi, certain characteristics such as morphometrics may vary across populations, and users should verify the guide’s criteria with other available field data.</span></p>","language":"English","publisher":"University of Hawai'i at Hilo","usgsCitation":"Paxton, E., McLaughlin, R., Levins, S., VanderWerf, E., and Lancaster, N., 2016, Aging and sexing guide to the forest birds of Hawai‘i Island: Technical Report HCSU-079, iii, 73 p.","productDescription":"iii, 73 p.","numberOfPages":"77","ipdsId":"IP-079985","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":332437,"type":{"id":15,"text":"Index Page"},"url":"https://dspace.lib.hawaii.edu/handle/10790/2928"},{"id":333109,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5878a48ae4b04df303d95802","contributors":{"authors":[{"text":"Paxton, Eben H. 0000-0001-5578-7689 epaxton@usgs.gov","orcid":"https://orcid.org/0000-0001-5578-7689","contributorId":438,"corporation":false,"usgs":true,"family":"Paxton","given":"Eben H.","email":"epaxton@usgs.gov","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true},{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":false,"id":656393,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McLaughlin, Rachelle","contributorId":177619,"corporation":false,"usgs":false,"family":"McLaughlin","given":"Rachelle","email":"","affiliations":[],"preferred":false,"id":656396,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Levins, Stephanie","contributorId":177617,"corporation":false,"usgs":false,"family":"Levins","given":"Stephanie","email":"","affiliations":[],"preferred":false,"id":656394,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"VanderWerf, Eric","contributorId":150183,"corporation":false,"usgs":false,"family":"VanderWerf","given":"Eric","affiliations":[{"id":17933,"text":"Pacific Rim Conservation","active":true,"usgs":false}],"preferred":false,"id":658343,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lancaster, Nolan","contributorId":177618,"corporation":false,"usgs":false,"family":"Lancaster","given":"Nolan","email":"","affiliations":[],"preferred":false,"id":656395,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70179630,"text":"70179630 - 2016 - A new biogeographically disjunct giant gecko (<i>Gehyra</i>: Gekkonidae: Reptilia) from the East Melanesian Islands ","interactions":[],"lastModifiedDate":"2017-01-10T11:19:34","indexId":"70179630","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3814,"text":"Zootaxa","onlineIssn":"1175-5334","printIssn":"1175-5326","active":true,"publicationSubtype":{"id":10}},"title":"A new biogeographically disjunct giant gecko (<i>Gehyra</i>: Gekkonidae: Reptilia) from the East Melanesian Islands ","docAbstract":"<p>The East Melanesian Islands have been a focal area for research into island biogeography and community ecology. However, previously undescribed and biogeographically significant new species endemic to this region continue to be discovered. Here we describe a phylogenetically distinct (~20% divergence at the mitochondrial ND2 gene) and biogeographically disjunct new species of gecko in the genus <i>Gehyra</i>,<i> </i>from the Admiralty and St Matthias Islands. <i>Gehyra rohan</i> sp. nov. can be distinguished from all congeners by the combination of its very large size, ring of bright orange scales around the eye, moderate degree of lateral folding on the limbs and body, and aspects of head, body and tail scalation. Molecular data indicate mid to late Miocene divergence of the new species from nearest relatives occurring nearly 2000 kilometres away in Vanuatu and Fiji. Large <i>Gehyra</i> have not been recorded on the intervening large islands of the Bismark Archipelago (New Britain and New Ireland) and the Solomon Islands, suggesting this dispersal pre-dated the current configuration of these islands, extinction in intervening regions, or potentially elements of both. Conversely, low genetic divergence between disjunct samples on Manus and Mussau implies recent overseas dispersal via either natural or anthropogenic means.</p>","language":"English","publisher":"Magnolia Press","doi":"10.11646/zootaxa.4208.1.3","usgsCitation":"Oliver, P.M., Clegg, J.R., Fisher, R.N., Richards, S.J., Taylor, P.N., and Jocque, M.M., 2016, A new biogeographically disjunct giant gecko (<i>Gehyra</i>: Gekkonidae: Reptilia) from the East Melanesian Islands : Zootaxa, v. 4208, no. 1, p. 61-76, https://doi.org/10.11646/zootaxa.4208.1.3.","productDescription":"16 p.","startPage":"61","endPage":"76","ipdsId":"IP-080193","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":470287,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.11646/zootaxa.4208.1.3","text":"Publisher Index Page"},{"id":333015,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"4208","issue":"1","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2016-12-14","publicationStatus":"PW","scienceBaseUri":"58760115e4b04eac8e0746db","contributors":{"authors":[{"text":"Oliver, Paul M.","contributorId":178111,"corporation":false,"usgs":false,"family":"Oliver","given":"Paul","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":657957,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Clegg, Jonathan R.","contributorId":178112,"corporation":false,"usgs":false,"family":"Clegg","given":"Jonathan","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":657958,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fisher, Robert N. 0000-0002-2956-3240 rfisher@usgs.gov","orcid":"https://orcid.org/0000-0002-2956-3240","contributorId":1529,"corporation":false,"usgs":true,"family":"Fisher","given":"Robert","email":"rfisher@usgs.gov","middleInitial":"N.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":657956,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Richards, Stephen J.","contributorId":178113,"corporation":false,"usgs":false,"family":"Richards","given":"Stephen","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":657959,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Taylor, Peter N.","contributorId":178114,"corporation":false,"usgs":false,"family":"Taylor","given":"Peter","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":657960,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Jocque, Merlijn M. T.","contributorId":178115,"corporation":false,"usgs":false,"family":"Jocque","given":"Merlijn","email":"","middleInitial":"M. T.","affiliations":[],"preferred":false,"id":657961,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70180048,"text":"70180048 - 2016 - Alternative source models of very low frequency events","interactions":[],"lastModifiedDate":"2017-01-23T15:00:01","indexId":"70180048","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2314,"text":"Journal of Geophysical Research B: Solid Earth","active":true,"publicationSubtype":{"id":10}},"title":"Alternative source models of very low frequency events","docAbstract":"<p><span>We present alternative source models for very low frequency (VLF) events, previously inferred to be radiation from individual slow earthquakes that partly fill the period range between slow slip events lasting thousands of seconds and low-frequency earthquakes (LFE) with durations of tenths of a second. We show that VLF events may emerge from bandpass filtering a sum of clustered, shorter duration, LFE signals, believed to be the components of tectonic tremor. Most published studies show VLF events occurring concurrently with tremor bursts and LFE signals. Our analysis of continuous data from Costa Rica detected VLF events only when tremor was also occurring, which was only 7% of the total time examined. Using analytic and synthetic models, we show that a cluster of LFE signals produces the distinguishing characteristics of VLF events, which may be determined by the cluster envelope. The envelope may be diagnostic of a single, dynamic, slowly slipping event that propagates coherently over kilometers or represents a narrowly band-passed version of nearly simultaneous arrivals of radiation from slip on multiple higher stress drop and/or faster propagating slip patches with dimensions of tens of meters (i.e., LFE sources). Temporally clustered LFE sources may be triggered by single or multiple distinct aseismic slip events or represent the nearly simultaneous chance occurrence of background LFEs. Given the nonuniqueness in possible source durations, we suggest it is premature to draw conclusions about VLF event sources or how they scale.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1002/2016JB013001","usgsCitation":"Gomberg, J.S., Agnew, D., and Schwartz, S., 2016, Alternative source models of very low frequency events: Journal of Geophysical Research B: Solid Earth, v. 121, no. 9, p. 6722-6740, https://doi.org/10.1002/2016JB013001.","productDescription":"19 p.","startPage":"6722","endPage":"6740","ipdsId":"IP-073332","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":470283,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://www.escholarship.org/uc/item/5t24b5fb","text":"External Repository"},{"id":333747,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"121","issue":"9","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-09-24","publicationStatus":"PW","scienceBaseUri":"58872486e4b08aa8f945abc0","contributors":{"authors":[{"text":"Gomberg, Joan S. 0000-0002-0134-2606 gomberg@usgs.gov","orcid":"https://orcid.org/0000-0002-0134-2606","contributorId":1269,"corporation":false,"usgs":true,"family":"Gomberg","given":"Joan","email":"gomberg@usgs.gov","middleInitial":"S.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":660020,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Agnew, D.C.","contributorId":32186,"corporation":false,"usgs":true,"family":"Agnew","given":"D.C.","email":"","affiliations":[],"preferred":false,"id":660021,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schwartz, S.Y.","contributorId":35342,"corporation":false,"usgs":true,"family":"Schwartz","given":"S.Y.","email":"","affiliations":[],"preferred":false,"id":660022,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70179649,"text":"70179649 - 2016 - Environmental variability and population dynamics: Do European and North American ducks play by the same rules?","interactions":[],"lastModifiedDate":"2017-01-10T10:45:02","indexId":"70179649","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Environmental variability and population dynamics: Do European and North American ducks play by the same rules?","docAbstract":"<p><span>Density dependence, population regulation, and variability in population size are fundamental population processes, the manifestation and interrelationships of which are affected by environmental variability. However, there are surprisingly few empirical studies that distinguish the effect of environmental variability from the effects of population processes. We took advantage of a unique system, in which populations of the same duck species or close ecological counterparts live in highly variable (north American prairies) and in stable (north European lakes) environments, to distinguish the relative contributions of environmental variability (measured as between-year fluctuations in wetland numbers) and intraspecific interactions (density dependence) in driving population dynamics. We tested whether populations living in stable environments (in northern Europe) were more strongly governed by density dependence than populations living in variable environments (in North America). We also addressed whether relative population dynamical responses to environmental variability versus density corresponded to differences in life history strategies between dabbling (relatively “fast species” and governed by environmental variability) and diving (relatively “slow species” and governed by density) ducks. As expected, the variance component of population fluctuations caused by changes in breeding environments was greater in North America than in Europe. Contrary to expectations, however, populations in more stable environments were not less variable nor clearly more strongly density dependent than populations in highly variable environments. Also, contrary to expectations, populations of diving ducks were neither more stable nor stronger density dependent than populations of dabbling ducks, and the effect of environmental variability on population dynamics was greater in diving than in dabbling ducks. In general, irrespective of continent and species life history, environmental variability contributed more to variation in species abundances than did density. Our findings underscore the need for more studies on populations of the same species in different environments to verify the generality of current explanations about population dynamics and its association with species life history.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/ece3.2413","usgsCitation":"Poysa, H., Rintala, J., Johnson, D.H., Kauppinen, J., Lammi, E., Nudds, T.D., and Vaananen, V., 2016, Environmental variability and population dynamics: Do European and North American ducks play by the same rules?: Ecology and Evolution, v. 6, no. 19, p. 7004-7014, https://doi.org/10.1002/ece3.2413.","productDescription":"11 p.","startPage":"7004","endPage":"7014","ipdsId":"IP-078795","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":470281,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.2413","text":"Publisher Index Page"},{"id":333010,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"6","issue":"19","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationDate":"2016-09-09","publicationStatus":"PW","scienceBaseUri":"58760114e4b04eac8e0746d7","contributors":{"authors":[{"text":"Poysa, Hannu","contributorId":178160,"corporation":false,"usgs":false,"family":"Poysa","given":"Hannu","email":"","affiliations":[],"preferred":false,"id":658082,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Rintala, Jukka","contributorId":178161,"corporation":false,"usgs":false,"family":"Rintala","given":"Jukka","email":"","affiliations":[],"preferred":false,"id":658083,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Johnson, Douglas H. 0000-0002-7778-6641 douglas_h_johnson@usgs.gov","orcid":"https://orcid.org/0000-0002-7778-6641","contributorId":1387,"corporation":false,"usgs":true,"family":"Johnson","given":"Douglas","email":"douglas_h_johnson@usgs.gov","middleInitial":"H.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":658058,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kauppinen, Jukka","contributorId":178162,"corporation":false,"usgs":false,"family":"Kauppinen","given":"Jukka","email":"","affiliations":[],"preferred":false,"id":658084,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lammi, Esa","contributorId":178163,"corporation":false,"usgs":false,"family":"Lammi","given":"Esa","email":"","affiliations":[],"preferred":false,"id":658085,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Nudds, Thomas D.","contributorId":178164,"corporation":false,"usgs":false,"family":"Nudds","given":"Thomas","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":658086,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Vaananen, Veli-Matti","contributorId":178165,"corporation":false,"usgs":false,"family":"Vaananen","given":"Veli-Matti","email":"","affiliations":[],"preferred":false,"id":658087,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70178796,"text":"70178796 - 2016 - Streamflow data","interactions":[],"lastModifiedDate":"2017-11-16T13:19:45","indexId":"70178796","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Streamflow data","docAbstract":"<p>The importance of streamflow data to the world’s economy, environmental health, and public safety continues to grow as the population increases. The collection of streamflow data is often an involved and complicated process. The quality of streamflow data hinges on such things as site selection, instrumentation selection, streamgage maintenance and quality assurance, proper discharge measurement techniques, and the development and continued verification of the streamflow rating. This chapter serves only as an overview of the streamflow data collection process as proper treatment of considerations, techniques, and quality assurance cannot be addressed adequately in the space limitations of this chapter. Readers with the need for the detailed information on the streamflow data collection process are referred to the many references noted in this chapter.&nbsp;</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Handbook of Applied Hydrology","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"McGraw-Hill","publisherLocation":"New York, NY","usgsCitation":"Holmes, R.R., 2016, Streamflow data, chap. <i>of</i> Handbook of Applied Hydrology, p. 5-1-5-7.","productDescription":"7 p.","startPage":"5-1","endPage":"5-7","ipdsId":"IP-062503","costCenters":[{"id":502,"text":"Office of Surface Water","active":true,"usgs":true}],"links":[{"id":333133,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":348997,"rank":2,"type":{"id":15,"text":"Index Page"},"url":"https://www.mhprofessional.com/9780071835091-usa-handbook-of-applied-hydrology-second-edition-group"}],"edition":"Second edition","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5878a48de4b04df303d95818","contributors":{"editors":[{"text":"Singh, Vijay P.","contributorId":176741,"corporation":false,"usgs":false,"family":"Singh","given":"Vijay","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":722463,"contributorType":{"id":2,"text":"Editors"},"rank":1}],"authors":[{"text":"Holmes, Robert R. Jr. 0000-0002-5060-3999 bholmes@usgs.gov","orcid":"https://orcid.org/0000-0002-5060-3999","contributorId":1624,"corporation":false,"usgs":true,"family":"Holmes","given":"Robert","suffix":"Jr.","email":"bholmes@usgs.gov","middleInitial":"R.","affiliations":[{"id":502,"text":"Office of Surface Water","active":true,"usgs":true}],"preferred":false,"id":722440,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70180631,"text":"70180631 - 2016 - Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus","interactions":[],"lastModifiedDate":"2018-02-02T11:05:49","indexId":"70180631","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5051,"text":"Virus Evolution","onlineIssn":"2057-1577","active":true,"publicationSubtype":{"id":10}},"title":"Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus","docAbstract":"<p><span>Infectious hematopoietic necrosis virus (IHNV) is a negative-sense RNA virus that infects wild and cultured salmonids throughout the Pacific Coastal United States and Canada, from California to Alaska. Although infection of adult fish is usually asymptomatic, juvenile infections can result in high mortality events that impact salmon hatchery programs and commercial aquaculture. We used epidemiological case data and genetic sequence data from a 303 nt portion of the viral glycoprotein gene to study the evolutionary dynamics of U genogroup IHNV in the Pacific Northwestern United States from 1971 to 2013. We identified 114 unique genotypes among 1,219 U genogroup IHNV isolates representing 619 virus detection events. We found evidence for two previously unidentified, broad subgroups within the U genogroup, which we designated ‘UC’ and ‘UP’. Epidemiologic records indicated that UP viruses were detected more frequently in sockeye salmon (</span><i>Oncorhynchus nerka</i><span>) and in coastal waters of Washington and Oregon, whereas UC viruses were detected primarily in Chinook salmon (</span><i>Oncorhynchus tshawytscha</i><span>) and steelhead trout (</span><i>Oncorhynchus mykiss</i><span>) in the Columbia River Basin, which is a large, complex watershed extending throughout much of interior Washington, Oregon, and Idaho. These findings were supported by phylogenetic analysis and by<span>&nbsp;</span></span><i>F</i><sub>ST</sub><span>. Ancestral state reconstruction indicated that early UC viruses in the Columbia River Basin initially infected sockeye salmon but then emerged via host shifts into Chinook salmon and steelhead trout sometime during the 1980s. We postulate that the development of these subgroups within U genogroup was driven by selection pressure for viral adaptation to Chinook salmon and steelhead trout within the Columbia River Basin.</span></p>","language":"English","publisher":"Oxford University Press","doi":"10.1093/ve/vew034","usgsCitation":"Black, A., Breyta, R., Bedford, T., and Kurath, G., 2016, Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus: Virus Evolution, v. 2, no. 2, Article vew034; 13 p., https://doi.org/10.1093/ve/vew034.","productDescription":"Article vew034; 13 p.","ipdsId":"IP-074420","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":470290,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/ve/vew034","text":"Publisher Index Page"},{"id":334407,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Idaho, Oregon, Washington","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"MultiPolygon\",\"coordinates\":[[[[-111.044156,43.020052],[-111.046689,42.001567],[-113.893261,41.988057],[-114.831077,42.002207],[-121.035195,41.993323],[-123.145959,42.009247],[-123.656998,41.995137],[-124.211605,41.99846],[-124.270464,42.045553],[-124.299649,42.051736],[-124.356229,42.114952],[-124.361009,42.180752],[-124.383633,42.22716],[-124.410982,42.250547],[-124.410556,42.307431],[-124.429288,42.331746],[-124.424863,42.395426],[-124.434882,42.434916],[-124.390664,42.566593],[-124.401177,42.627192],[-124.413119,42.657934],[-124.45074,42.675798],[-124.473864,42.732671],[-124.491679,42.741789],[-124.510017,42.734746],[-124.552441,42.840568],[-124.456918,43.000315],[-124.434451,43.115986],[-124.401726,43.184896],[-124.38246,43.270167],[-124.402814,43.305872],[-124.373037,43.338953],[-124.341587,43.351337],[-124.315012,43.388389],[-124.233534,43.55713],[-124.168392,43.808903],[-124.142704,43.958182],[-124.111054,44.235071],[-124.1152,44.286486],[-124.084401,44.415611],[-124.071706,44.423662],[-124.084429,44.486927],[-124.067251,44.60804],[-124.082326,44.608861],[-124.065202,44.622445],[-124.058281,44.658866],[-124.070394,44.683514],[-124.059077,44.737656],[-124.075473,44.771403],[-124.074066,44.798107],[-124.025136,44.928175],[-124.004598,45.044959],[-124.017991,45.049808],[-124.015851,45.064759],[-123.989529,45.094045],[-123.975425,45.145476],[-123.964169,45.317026],[-123.972899,45.33689],[-124.007756,45.336813],[-123.973398,45.354791],[-123.965728,45.386242],[-123.960557,45.430778],[-123.976544,45.489733],[-123.957568,45.510399],[-123.939005,45.661923],[-123.943121,45.727031],[-123.982578,45.761815],[-123.969459,45.782371],[-123.962736,45.869974],[-123.96763,45.907807],[-123.993703,45.946431],[-123.969991,45.969139],[-123.941831,45.97566],[-123.927891,46.009564],[-123.933366,46.071672],[-123.974124,46.168798],[-124.024305,46.229256],[-124.001998,46.237316],[-123.987196,46.211521],[-123.950148,46.204097],[-123.9042,46.169293],[-123.854801,46.157342],[-123.841521,46.169824],[-123.863347,46.18235],[-123.838801,46.192211],[-123.636474,46.214359],[-123.625219,46.233868],[-123.605487,46.2393],[-123.586205,46.228654],[-123.548194,46.248245],[-123.547659,46.259109],[-123.669501,46.266832],[-123.680574,46.296025],[-123.700764,46.305278],[-123.75956,46.275073],[-123.806139,46.283588],[-123.875525,46.239787],[-123.909306,46.245491],[-123.985204,46.309039],[-124.020551,46.315737],[-124.044018,46.275925],[-124.080671,46.267239],[-124.057425,46.409315],[-124.069583,46.630651],[-124.048444,46.645827],[-124.035874,46.630822],[-124.052708,46.622796],[-124.023566,46.582559],[-124.026032,46.462978],[-123.990615,46.463019],[-123.988386,46.497008],[-123.97083,46.47537],[-123.943667,46.477197],[-123.894254,46.537028],[-123.928861,46.588875],[-123.955556,46.60357],[-123.960642,46.636364],[-123.921913,46.650262],[-123.923269,46.672708],[-123.851356,46.70256],[-123.84621,46.716795],[-123.893054,46.750204],[-123.929073,46.725278],[-123.968564,46.736106],[-123.979655,46.724658],[-123.966886,46.705184],[-124.003458,46.702337],[-124.092176,46.741624],[-124.108078,46.836388],[-124.138225,46.905534],[-124.117712,46.91238],[-124.093392,46.901168],[-124.089286,46.867716],[-124.073113,46.861493],[-124.055085,46.870429],[-124.049279,46.891253],[-123.985082,46.921916],[-123.86018,46.948556],[-123.898245,46.971927],[-124.012218,46.985176],[-124.019727,46.991189],[-124.005248,47.003915],[-124.026345,47.030187],[-124.122057,47.04165],[-124.151288,47.021112],[-124.124386,46.94387],[-124.180111,46.926357],[-124.169113,46.994508],[-124.182802,47.134041],[-124.236349,47.287287],[-124.271193,47.305025],[-124.299943,47.34836],[-124.319379,47.355559],[-124.355955,47.545698],[-124.425195,47.738434],[-124.453927,47.765334],[-124.471687,47.766907],[-124.489737,47.816988],[-124.539927,47.836967],[-124.562363,47.866216],[-124.625512,47.887963],[-124.645442,47.935338],[-124.672427,47.964414],[-124.696542,48.069274],[-124.688602,48.092466],[-124.731746,48.169997],[-124.696111,48.198599],[-124.6909,48.212617],[-124.705031,48.238774],[-124.684677,48.255228],[-124.65894,48.331057],[-124.731828,48.381157],[-124.653243,48.390691],[-124.631108,48.376522],[-124.599278,48.381035],[-124.395593,48.288772],[-124.361351,48.287582],[-124.272017,48.25441],[-124.238582,48.262471],[-124.101773,48.216883],[-124.107215,48.200082],[-124.050734,48.177747],[-123.981032,48.164761],[-123.858821,48.154273],[-123.672445,48.162715],[-123.628819,48.139279],[-123.590839,48.134949],[-123.551131,48.151382],[-123.507235,48.131807],[-123.440128,48.142014],[-123.441972,48.124259],[-123.424668,48.118065],[-123.332699,48.11297],[-123.239129,48.118217],[-123.133445,48.177276],[-123.143229,48.156633],[-123.06621,48.120469],[-123.038727,48.081138],[-122.929095,48.096244],[-122.917942,48.091535],[-122.927975,48.06665],[-122.877641,48.047025],[-122.849273,48.053808],[-122.878255,48.076072],[-122.882013,48.100779],[-122.833173,48.134406],[-122.760448,48.14324],[-122.748911,48.117026],[-122.801399,48.087561],[-122.766648,48.04429],[-122.74229,48.049324],[-122.739271,48.069153],[-122.747389,48.070795],[-122.733257,48.091232],[-122.68724,48.101662],[-122.69222,48.087081],[-122.669868,48.017217],[-122.723374,48.008095],[-122.718082,47.987739],[-122.683223,47.972226],[-122.681924,47.936415],[-122.651063,47.920985],[-122.646494,47.894771],[-122.610341,47.887343],[-122.63636,47.866186],[-122.69376,47.868002],[-122.683742,47.838773],[-122.748061,47.800546],[-122.758498,47.746036],[-122.781682,47.70392],[-122.811929,47.679861],[-122.832139,47.695511],[-122.790619,47.792597],[-122.812616,47.840029],[-122.820178,47.835904],[-122.815027,47.807493],[-122.845612,47.777474],[-122.896524,47.674838],[-122.97244,47.6149],[-123.106486,47.45817],[-123.15598,47.355745],[-123.140169,47.347496],[-123.111298,47.362619],[-123.120234,47.39149],[-122.967284,47.585685],[-122.856611,47.649615],[-122.754186,47.671612],[-122.740159,47.736228],[-122.714801,47.768176],[-122.690562,47.778372],[-122.684085,47.798574],[-122.608105,47.856728],[-122.573672,47.857582],[-122.588235,47.912923],[-122.616701,47.925139],[-122.617022,47.938987],[-122.603861,47.940478],[-122.592184,47.922519],[-122.549072,47.919072],[-122.513986,47.880807],[-122.506122,47.831745],[-122.482529,47.815511],[-122.495458,47.786692],[-122.470333,47.757109],[-122.488491,47.743605],[-122.554454,47.745704],[-122.543161,47.710941],[-122.504604,47.699136],[-122.518277,47.65132],[-122.493205,47.635122],[-122.49824,47.598242],[-122.483805,47.586721],[-122.543118,47.556326],[-122.547207,47.528257],[-122.494882,47.510265],[-122.530514,47.469041],[-122.531889,47.428827],[-122.551136,47.394456],[-122.537044,47.375896],[-122.573739,47.318419],[-122.550134,47.290496],[-122.589454,47.227618],[-122.611464,47.2181],[-122.692426,47.280026],[-122.671256,47.343774],[-122.634823,47.370583],[-122.639126,47.377822],[-122.725738,47.33047],[-122.749621,47.276408],[-122.641802,47.205013],[-122.711997,47.127681],[-122.771619,47.167109],[-122.832799,47.243412],[-122.799025,47.289306],[-122.803688,47.355071],[-122.821868,47.363069],[-122.822344,47.319763],[-122.863732,47.270221],[-122.838298,47.208353],[-122.858735,47.167955],[-122.814238,47.179482],[-122.775056,47.123114],[-122.721437,47.103179],[-122.67813,47.103866],[-122.631987,47.140589],[-122.614855,47.169143],[-122.590829,47.178107],[-122.527586,47.291531],[-122.547747,47.316403],[-122.4442,47.266723],[-122.409199,47.288556],[-122.444635,47.300421],[-122.423535,47.319121],[-122.324833,47.348521],[-122.328434,47.400621],[-122.348035,47.415921],[-122.355135,47.441921],[-122.383136,47.450521],[-122.368036,47.459221],[-122.365236,47.48842],[-122.396538,47.51522],[-122.398338,47.55012],[-122.421139,47.57602],[-122.387139,47.59572],[-122.358238,47.58482],[-122.339513,47.599113],[-122.367819,47.624213],[-122.414645,47.639766],[-122.429841,47.658919],[-122.37314,47.729219],[-122.397043,47.779719],[-122.394944,47.803318],[-122.339944,47.846718],[-122.307048,47.949117],[-122.230046,47.970917],[-122.224979,48.016626],[-122.343241,48.097631],[-122.363842,48.12393],[-122.370253,48.164809],[-122.362044,48.187568],[-122.395499,48.228551],[-122.449605,48.232598],[-122.441731,48.211776],[-122.478535,48.188087],[-122.479008,48.175703],[-122.442383,48.130841],[-122.379481,48.087384],[-122.363107,48.054546],[-122.4675,48.130353],[-122.486736,48.12095],[-122.512031,48.133931],[-122.53722,48.183745],[-122.530996,48.249821],[-122.480925,48.251706],[-122.466803,48.269604],[-122.406516,48.25183],[-122.371693,48.287839],[-122.408718,48.326413],[-122.533452,48.383409],[-122.554536,48.40604],[-122.557298,48.444438],[-122.649839,48.408526],[-122.678928,48.439466],[-122.654844,48.454087],[-122.657753,48.47294],[-122.689121,48.476849],[-122.700603,48.457632],[-122.710362,48.461584],[-122.712981,48.47879],[-122.684521,48.509123],[-122.606961,48.522152],[-122.568071,48.50821],[-122.537355,48.466749],[-122.500721,48.460887],[-122.471832,48.470724],[-122.498463,48.556206],[-122.534719,48.574246],[-122.495904,48.575927],[-122.482406,48.559653],[-122.44456,48.570115],[-122.425271,48.599522],[-122.500308,48.656163],[-122.519172,48.713095],[-122.490401,48.751128],[-122.535803,48.776128],[-122.596844,48.771492],[-122.637146,48.735708],[-122.612562,48.714932],[-122.605733,48.701066],[-122.615169,48.693839],[-122.673472,48.733082],[-122.645743,48.781538],[-122.680246,48.80275],[-122.693683,48.804475],[-122.703106,48.786321],[-122.7112,48.79146],[-122.717073,48.84719],[-122.793175,48.892927],[-122.751289,48.911239],[-122.746596,48.930731],[-122.766096,48.941955],[-122.787539,48.931702],[-122.818232,48.939062],[-122.817226,48.95597],[-122.796887,48.975026],[-122.756318,48.996881],[-116.049193,49.000912],[-116.04885,47.977186],[-116.030751,47.973349],[-115.906409,47.846261],[-115.881522,47.849672],[-115.852291,47.827991],[-115.835365,47.760957],[-115.824597,47.752154],[-115.803917,47.75848],[-115.780441,47.743447],[-115.776219,47.719818],[-115.72377,47.696671],[-115.73627,47.654762],[-115.694284,47.62346],[-115.689404,47.595402],[-115.734674,47.567401],[-115.747263,47.543197],[-115.717024,47.532693],[-115.686704,47.485596],[-115.655272,47.477944],[-115.654318,47.468077],[-115.671188,47.45439],[-115.718247,47.45316],[-115.731348,47.433381],[-115.657681,47.400651],[-115.644341,47.381826],[-115.609492,47.380799],[-115.556318,47.353076],[-115.51186,47.295219],[-115.428359,47.278722],[-115.410685,47.264228],[-115.326903,47.255912],[-115.29211,47.209861],[-115.300805,47.19393],[-115.261885,47.181742],[-115.243707,47.150347],[-115.200547,47.139154],[-115.140375,47.093013],[-115.107132,47.049041],[-115.087806,47.045519],[-115.049538,46.970774],[-115.001274,46.971901],[-114.963978,46.932889],[-114.929997,46.919625],[-114.931058,46.882108],[-114.947413,46.859324],[-114.928615,46.854815],[-114.920459,46.827697],[-114.888146,46.808573],[-114.864342,46.813858],[-114.829117,46.782503],[-114.79004,46.778729],[-114.765106,46.758153],[-114.788656,46.714033],[-114.76689,46.696901],[-114.713516,46.715138],[-114.699008,46.740223],[-114.649388,46.73289],[-114.620859,46.707415],[-114.623198,46.691511],[-114.641745,46.679286],[-114.635713,46.659375],[-114.595213,46.633456],[-114.547321,46.644485],[-114.466902,46.631695],[-114.424424,46.660648],[-114.360709,46.669059],[-114.320665,46.646963],[-114.348733,46.533792],[-114.342072,46.519679],[-114.35874,46.505306],[-114.403019,46.498675],[-114.376413,46.442983],[-114.384756,46.411784],[-114.422458,46.387097],[-114.411592,46.366688],[-114.413758,46.335945],[-114.431708,46.310744],[-114.425587,46.287899],[-114.470479,46.26732],[-114.445497,46.220227],[-114.445928,46.173933],[-114.472643,46.162202],[-114.514706,46.167726],[-114.527096,46.146218],[-114.5213,46.125287],[-114.474415,46.112515],[-114.460049,46.097104],[-114.468529,46.062484],[-114.493418,46.03717],[-114.470965,45.995742],[-114.425843,45.984984],[-114.403712,45.967049],[-114.431328,45.938023],[-114.387166,45.889164],[-114.409477,45.85164],[-114.44868,45.858891],[-114.509303,45.845531],[-114.512973,45.828825],[-114.562509,45.779927],[-114.495421,45.703321],[-114.507645,45.658949],[-114.561046,45.639906],[-114.538132,45.606834],[-114.559038,45.565706],[-114.460542,45.561283],[-114.456764,45.543983],[-114.415804,45.509753],[-114.36852,45.492716],[-114.360719,45.474116],[-114.333218,45.459316],[-114.270717,45.486116],[-114.247824,45.524283],[-114.248121,45.545877],[-114.192802,45.536596],[-114.180043,45.551432],[-114.135249,45.557465],[-114.122322,45.58426],[-114.086584,45.59118],[-114.067619,45.627706],[-114.018731,45.648616],[-114.019315,45.692937],[-113.986656,45.704564],[-113.93422,45.682232],[-113.898883,45.644167],[-113.904691,45.622007],[-113.861404,45.62366],[-113.806729,45.602146],[-113.803261,45.584193],[-113.834555,45.520729],[-113.766022,45.520621],[-113.759986,45.480735],[-113.78416,45.454946],[-113.764591,45.431403],[-113.765203,45.410601],[-113.734402,45.392353],[-113.738729,45.329741],[-113.689359,45.28355],[-113.684946,45.253706],[-113.599506,45.191114],[-113.57467,45.128411],[-113.554744,45.112901],[-113.513342,45.115225],[-113.506638,45.107288],[-113.520134,45.093033],[-113.485278,45.063519],[-113.45197,45.059247],[-113.437726,45.006967],[-113.446884,44.998545],[-113.443782,44.95989],[-113.498745,44.942314],[-113.455071,44.865424],[-113.356062,44.819798],[-113.3461,44.800611],[-113.354763,44.795468],[-113.341704,44.784853],[-113.247166,44.82295],[-113.131453,44.772837],[-113.134824,44.752763],[-113.102138,44.729027],[-113.098064,44.697477],[-113.06776,44.679474],[-113.068306,44.656374],[-113.049349,44.62938],[-113.083819,44.60222],[-113.019777,44.528505],[-113.020917,44.493827],[-113.003544,44.450814],[-112.951146,44.416699],[-112.886041,44.395874],[-112.855395,44.359975],[-112.814156,44.377198],[-112.812608,44.392275],[-112.836034,44.422653],[-112.781294,44.484888],[-112.71911,44.504344],[-112.664485,44.48645],[-112.541989,44.483971],[-112.50031,44.463051],[-112.473207,44.480027],[-112.387389,44.448058],[-112.358926,44.48628],[-112.35421,44.535638],[-112.319198,44.53911],[-112.286187,44.568472],[-112.242785,44.568091],[-112.221698,44.543519],[-112.183937,44.533067],[-112.136454,44.539911],[-112.106755,44.520829],[-112.069011,44.537104],[-112.036943,44.530323],[-112.032707,44.546642],[-111.980833,44.536682],[-111.947941,44.556776],[-111.870504,44.564033],[-111.821488,44.509286],[-111.715474,44.543543],[-111.704218,44.560205],[-111.617348,44.549467],[-111.591768,44.561502],[-111.471682,44.540824],[-111.469185,44.552044],[-111.519126,44.582916],[-111.525764,44.604883],[-111.473178,44.665479],[-111.468833,44.679335],[-111.484898,44.687578],[-111.486019,44.707654],[-111.438793,44.720546],[-111.414271,44.710741],[-111.385005,44.755128],[-111.355768,44.727602],[-111.323669,44.724474],[-111.26875,44.668279],[-111.276956,44.655626],[-111.25268,44.651092],[-111.224161,44.623402],[-111.225208,44.581006],[-111.189617,44.571062],[-111.143557,44.535732],[-111.122654,44.493659],[-111.048974,44.474072],[-111.044156,43.020052]]],[[[-122.519535,48.288314],[-122.551793,48.281512],[-122.584086,48.297987],[-122.618466,48.294159],[-122.623779,48.269431],[-122.652639,48.265081],[-122.668385,48.223967],[-122.63126,48.220686],[-122.588138,48.18594],[-122.558205,48.119579],[-122.571615,48.105113],[-122.54512,48.05255],[-122.516314,48.057181],[-122.511081,48.075301],[-122.525422,48.096537],[-122.513276,48.097538],[-122.491104,48.094242],[-122.431266,48.045001],[-122.376259,48.034457],[-122.373263,48.000791],[-122.353611,47.981433],[-122.349597,47.958796],[-122.380497,47.904023],[-122.431035,47.914732],[-122.445519,47.930226],[-122.446682,47.963155],[-122.47266,47.988449],[-122.546824,47.967215],[-122.542924,47.996404],[-122.607342,48.030992],[-122.593621,48.0472],[-122.614028,48.072788],[-122.598301,48.110616],[-122.609568,48.15186],[-122.633167,48.163281],[-122.679556,48.155113],[-122.693084,48.181509],[-122.770045,48.224395],[-122.72259,48.304268],[-122.673731,48.354683],[-122.664659,48.401508],[-122.634991,48.404244],[-122.637892,48.395681],[-122.60198,48.409907],[-122.585038,48.395166],[-122.585162,48.353304],[-122.506568,48.310041],[-122.519535,48.288314]]],[[[-122.474684,47.511068],[-122.452399,47.503471],[-122.460442,47.493764],[-122.433385,47.46643],[-122.437656,47.407424],[-122.373628,47.388718],[-122.437809,47.365606],[-122.453997,47.343337],[-122.51885,47.33332],[-122.528128,47.345542],[-122.517797,47.368678],[-122.526733,47.398581],[-122.514703,47.414048],[-122.513328,47.449106],[-122.482739,47.483133],[-122.474684,47.511068]]],[[[-122.695907,48.737273],[-122.663259,48.697077],[-122.618225,48.670721],[-122.609576,48.645018],[-122.673538,48.680809],[-122.691795,48.711498],[-122.718833,48.716818],[-122.715709,48.748672],[-122.695907,48.737273]]],[[[-123.035393,49.002154],[-123.021459,48.977299],[-123.083834,48.976139],[-123.090546,49.001976],[-123.035393,49.002154]]],[[[-122.800217,48.60169],[-122.801096,48.585425],[-122.771206,48.562426],[-122.788503,48.530393],[-122.779124,48.508911],[-122.816332,48.487841],[-122.81973,48.458843],[-122.802509,48.433098],[-122.812208,48.422326],[-122.874135,48.418196],[-122.893646,48.422655],[-122.889016,48.435947],[-122.928004,48.439966],[-122.91646,48.453263],[-122.926901,48.460874],[-122.962009,48.451161],[-123.039156,48.460003],[-123.119451,48.492576],[-123.163234,48.529544],[-123.173061,48.579086],[-123.203026,48.596178],[-123.178425,48.622115],[-123.107362,48.622451],[-123.102074,48.604035],[-123.048403,48.569216],[-122.987296,48.561895],[-122.995026,48.578162],[-123.034101,48.591767],[-123.024902,48.594484],[-123.048652,48.621002],[-122.941316,48.702904],[-122.894599,48.71503],[-122.743049,48.661991],[-122.809622,48.619035],[-122.800217,48.60169]]],[[[-123.197953,48.68466],[-123.14799,48.668001],[-123.106165,48.633473],[-123.237148,48.683466],[-123.197953,48.68466]]],[[[-123.025486,48.717966],[-123.009787,48.722291],[-123.005086,48.694342],[-123.021215,48.681416],[-123.042337,48.675663],[-123.035672,48.68535],[-123.047058,48.695772],[-123.070427,48.699971],[-123.025486,48.717966]]],[[[-122.649405,48.588457],[-122.583985,48.551534],[-122.572967,48.529028],[-122.599948,48.536904],[-122.649256,48.528769],[-122.649405,48.588457]]],[[[-122.714512,48.60878],[-122.670638,48.568812],[-122.68944,48.543903],[-122.717278,48.539739],[-122.73944,48.573893],[-122.714512,48.60878]]],[[[-122.699266,48.621115],[-122.674173,48.629944],[-122.657016,48.609891],[-122.699266,48.621115]]]]},\"properties\":{\"name\":\"Idaho\",\"nation\":\"USA  \"}}]}","volume":"2","issue":"2","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-12-26","publicationStatus":"PW","scienceBaseUri":"5891b0a8e4b072a7ac1298ed","contributors":{"authors":[{"text":"Black, Allison","contributorId":147061,"corporation":false,"usgs":false,"family":"Black","given":"Allison","email":"","affiliations":[{"id":16782,"text":"Institute for Public Health Genetics, UW, Seattle, WA","active":true,"usgs":false}],"preferred":false,"id":661803,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Breyta, Rachel","contributorId":150355,"corporation":false,"usgs":false,"family":"Breyta","given":"Rachel","affiliations":[],"preferred":false,"id":661804,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bedford, Trevor","contributorId":178965,"corporation":false,"usgs":false,"family":"Bedford","given":"Trevor","email":"","affiliations":[],"preferred":false,"id":661805,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kurath, Gael 0000-0003-3294-560X gkurath@usgs.gov","orcid":"https://orcid.org/0000-0003-3294-560X","contributorId":2629,"corporation":false,"usgs":true,"family":"Kurath","given":"Gael","email":"gkurath@usgs.gov","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":661802,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70179631,"text":"70179631 - 2016 - Large-scale recovery of an endangered amphibian despite ongoing exposure to multiple stressors","interactions":[],"lastModifiedDate":"2017-01-10T11:34:29","indexId":"70179631","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3165,"text":"Proceedings of the National Academy of Sciences of the United States of America","active":true,"publicationSubtype":{"id":10}},"title":"Large-scale recovery of an endangered amphibian despite ongoing exposure to multiple stressors","docAbstract":"<p><span>Amphibians are one of the most threatened animal groups, with 32% of species at risk for extinction. Given this imperiled status, is the disappearance of a large fraction of the Earth’s amphibians inevitable, or are some declining species more resilient than is generally assumed? We address this question in a species that is emblematic of many declining amphibians, the endangered Sierra Nevada yellow-legged frog (</span><i>Rana sierrae</i><span>). Based on &gt;7,000 frog surveys conducted across Yosemite National Park over a 20-y period, we show that, after decades of decline and despite ongoing exposure to multiple stressors, including introduced fish, the recently emerged disease chytridiomycosis, and pesticides, </span><i>R. sierrae</i><span> abundance increased sevenfold during the study and at a rate of 11% per year. These increases occurred in hundreds of populations throughout Yosemite, providing a rare example of amphibian recovery at an ecologically relevant spatial scale. Results from a laboratory experiment indicate that these increases may be in part because of reduced frog susceptibility to chytridiomycosis. The disappearance of nonnative fish from numerous water bodies after cessation of stocking also contributed to the recovery. The large-scale increases in </span><i>R. sierrae</i><span> abundance that we document suggest that, when habitats are relatively intact and stressors are reduced in their importance by active management or species’ adaptive responses, declines of some amphibians may be partially reversible, at least at a regional scale. Other studies conducted over similarly large temporal and spatial scales are critically needed to provide insight and generality about the reversibility of amphibian declines at a global scale.</span></p>","language":"English","publisher":"National Academy of Sciences","doi":"10.1073/pnas.1600983113","usgsCitation":"Knapp, R.A., Fellers, G.M., Kleeman, P.M., Miller, D.A., Vrendenburg, V.T., Rosenblum, E.B., and Briggs, C.J., 2016, Large-scale recovery of an endangered amphibian despite ongoing exposure to multiple stressors: Proceedings of the National Academy of Sciences of the United States of America, v. 113, no. 42, p. 11889-11894, https://doi.org/10.1073/pnas.1600983113.","productDescription":"6 p.","startPage":"11889","endPage":"11894","ipdsId":"IP-075546","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":470292,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1073/pnas.1600983113","text":"Publisher Index Page"},{"id":333020,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"113","issue":"42","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-03","publicationStatus":"PW","scienceBaseUri":"58760115e4b04eac8e0746d9","chorus":{"doi":"10.1073/pnas.1600983113","url":"http://dx.doi.org/10.1073/pnas.1600983113","publisher":"Proceedings of the National Academy of Sciences","authors":"Knapp Roland A., Fellers Gary M., Kleeman Patrick M., Miller David A. W., Vredenburg Vance T., Rosenblum Erica Bree, Briggs Cheryl J.","journalName":"Proceedings of the National Academy of Sciences","publicationDate":"10/3/2016","publiclyAccessibleDate":"4/18/2017"},"contributors":{"authors":[{"text":"Knapp, Roland A.","contributorId":69901,"corporation":false,"usgs":false,"family":"Knapp","given":"Roland","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":657963,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Fellers, Gary M. 0000-0003-4092-0285 gary_fellers@usgs.gov","orcid":"https://orcid.org/0000-0003-4092-0285","contributorId":3150,"corporation":false,"usgs":true,"family":"Fellers","given":"Gary","email":"gary_fellers@usgs.gov","middleInitial":"M.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":657962,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kleeman, Patrick M. 0000-0001-6567-3239 pkleeman@usgs.gov","orcid":"https://orcid.org/0000-0001-6567-3239","contributorId":3948,"corporation":false,"usgs":true,"family":"Kleeman","given":"Patrick","email":"pkleeman@usgs.gov","middleInitial":"M.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":657964,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Miller, David A. W.","contributorId":126732,"corporation":false,"usgs":false,"family":"Miller","given":"David","email":"","middleInitial":"A. W.","affiliations":[{"id":5039,"text":"Department of Environment, Land, and Infrastructure Engineering, Politecnico di Torino, Torino, Italy","active":true,"usgs":false}],"preferred":false,"id":657965,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Vrendenburg, Vance T.","contributorId":178116,"corporation":false,"usgs":false,"family":"Vrendenburg","given":"Vance","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":657966,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Rosenblum, Erica Bree","contributorId":104330,"corporation":false,"usgs":false,"family":"Rosenblum","given":"Erica","email":"","middleInitial":"Bree","affiliations":[{"id":6643,"text":"University of California - Berkeley","active":true,"usgs":false}],"preferred":false,"id":657967,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Briggs, Cheryl J.","contributorId":127721,"corporation":false,"usgs":false,"family":"Briggs","given":"Cheryl","email":"","middleInitial":"J.","affiliations":[{"id":6710,"text":"University of California, Santa Barbara, CA","active":true,"usgs":false}],"preferred":false,"id":657968,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70178794,"text":"70178794 - 2016 - Influence of static habitat attributes on local and regional Rocky intertidal community structure","interactions":[],"lastModifiedDate":"2017-06-28T14:51:55","indexId":"70178794","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1584,"text":"Estuaries and Coasts","active":true,"publicationSubtype":{"id":10}},"title":"Influence of static habitat attributes on local and regional Rocky intertidal community structure","docAbstract":"<p><span>Rocky intertidal communities are structured by local environmental drivers, which can be dynamic, fluctuating on various temporal scales, or static and not greatly varying across years. We examined the role of six static drivers (distance to freshwater, tidewater glacial presence, wave exposure, fetch, beach slope, and substrate composition) on intertidal community structure across the northern Gulf of Alaska. We hypothesized that community structure is less similar at the local scale compared with the regional scale, coinciding with static drivers being less similar on smaller than larger scales. We also hypothesized that static attributes mainly drive local biological community structure. For this, we surveyed five to six sites in each of the six regions in the mid and low intertidal strata. Across regions, static attributes were not consistently different and only small clusters of sites had similar attributes. Additionally, intertidal communities were less similar on the site compared with the region level. These results suggest that these biological communities are not strongly influenced by the local static attributes measured in this study. An alternative explanation is that static attributes among our regions are not different enough to influence the biological communities. This lack of evidence for a strong static driver may be a result of our site selection, which targeted rocky sheltered communities. This suggests that this habitat may be ideal to examine the influence of dynamic drivers. We recommend that future analyses of dynamic attributes may best be performed after analyses have demonstrated that sites do not differ in static attributes.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s12237-016-0114-0","usgsCitation":"Konar, B., Iken, K., Coletti, H., Monson, D., and Weitzman, B., 2016, Influence of static habitat attributes on local and regional Rocky intertidal community structure: Estuaries and Coasts, v. 39, no. 6, p. 1735-1745, https://doi.org/10.1007/s12237-016-0114-0.","productDescription":"11 p.","startPage":"1735","endPage":"1745","ipdsId":"IP-060190","costCenters":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"links":[{"id":496914,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7513WCB","text":"USGS data release","linkHelpText":"Rocky Intertidal Data from Prince William Sound, Katmai National Park and Preserve, and Kenai Fjords National Park"},{"id":333134,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"39","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-05-26","publicationStatus":"PW","scienceBaseUri":"5878a48be4b04df303d95804","contributors":{"authors":[{"text":"Konar, B.","contributorId":93658,"corporation":false,"usgs":true,"family":"Konar","given":"B.","email":"","affiliations":[],"preferred":false,"id":658368,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Iken, K.","contributorId":178282,"corporation":false,"usgs":false,"family":"Iken","given":"K.","affiliations":[],"preferred":false,"id":658369,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Coletti, H.","contributorId":178283,"corporation":false,"usgs":false,"family":"Coletti","given":"H.","affiliations":[],"preferred":false,"id":658370,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Monson, Daniel H. 0000-0002-4593-5673 dmonson@usgs.gov","orcid":"https://orcid.org/0000-0002-4593-5673","contributorId":140480,"corporation":false,"usgs":true,"family":"Monson","given":"Daniel H.","email":"dmonson@usgs.gov","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":false,"id":658371,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Weitzman, Ben P. 0000-0001-7559-3654 bweitzman@usgs.gov","orcid":"https://orcid.org/0000-0001-7559-3654","contributorId":5123,"corporation":false,"usgs":true,"family":"Weitzman","given":"Ben P.","email":"bweitzman@usgs.gov","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":658372,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70178487,"text":"70178487 - 2016 - The integrated rangeland fire management strategy actionable science plan","interactions":[],"lastModifiedDate":"2024-05-15T14:08:41.512405","indexId":"70178487","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":1,"text":"Federal Government Series"},"title":"The integrated rangeland fire management strategy actionable science plan","docAbstract":"<p><span>The Integrated Rangeland Fire Management Strategy (hereafter Strategy, DOI 2015) outlined the need for coordinated, science-based adaptive management to achieve long-term protection, conservation, and restoration of the sagebrush (Artemisia spp.) ecosystem. A key component of this management approach is the identification of knowledge gaps that limit implementation of effective strategies to meet current management challenges. The tasks and actions identified in the Strategy address several broad topics related to management of the sagebrush ecosystem. This science plan is organized around these topics and specifically focuses on fire, invasive plant species and their effects on altering fire regimes, restoration, sagebrush and greater sage-grouse (Centrocercus urophasianus), and climate and weather.</span></p>","language":"English","publisher":"Department of Interior","publisherLocation":"Washington, D.C.","usgsCitation":"Aldridge, C.L., Berg, K., Boyd, C.S., Boyte, S.P., Bradford, J.B., Brunson, E., Cissel, J.H., Conway, C.J., Chalfoun, A.D., Chambers, J.C., Clark, P., Coates, P.S., Crist, M.R., Davis, D.M., DeCrappeo, N., Deibert, P.A., Doherty, K., Evers, L.B., Finch, D.M., Finn, S.P., Germino, M.J., Glenn, N.F., Gucker, C., Hall, J.A., Hanser, S., Havlina, D.W., Heinrichs, J.A., Heller, M., Homer, C.G., Hunter, M.E., Jacobs, R.W., Karl, J., Kearney, R., Kemp, S.K., Kilkenny, F.F., Knick, S.T., Launchbaugh, K., Manier, D.J., Mayer, K., Meyer, S.E., Monroe, A., MontBlanc, E., Newingham, B.A., Pellant, M.L., Phillips, S.L., Pilliod, D., Ricca, M.A., Richardson, B., Rose, J.A., Shaw, N., Sheley, R.L., Shinneman, D., Wiechman, L.A., and Wylie, B.K., 2016, The integrated rangeland fire management strategy actionable science plan, viii, 128 p.","productDescription":"viii, 128 p.","numberOfPages":"139","ipdsId":"IP-079030","costCenters":[{"id":506,"text":"Office of the AD Ecosystems","active":true,"usgs":true}],"links":[{"id":428734,"rank":2,"type":{"id":15,"text":"Index Page"},"url":"https://www.fs.usda.gov/treesearch/pubs/53265"},{"id":352139,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5afee922e4b0da30c1bfc525","contributors":{"authors":[{"text":"Aldridge, Cameron L. 0000-0003-3926-6941 aldridgec@usgs.gov","orcid":"https://orcid.org/0000-0003-3926-6941","contributorId":191773,"corporation":false,"usgs":true,"family":"Aldridge","given":"Cameron","email":"aldridgec@usgs.gov","middleInitial":"L.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":false,"id":729818,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Berg, Ken","contributorId":191020,"corporation":false,"usgs":true,"family":"Berg","given":"Ken","email":"","affiliations":[],"preferred":false,"id":729819,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Boyd, Chad S.","contributorId":118169,"corporation":false,"usgs":true,"family":"Boyd","given":"Chad","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":729820,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Boyte, Stephen P. 0000-0002-5462-3225 sboyte@usgs.gov","orcid":"https://orcid.org/0000-0002-5462-3225","contributorId":3463,"corporation":false,"usgs":true,"family":"Boyte","given":"Stephen","email":"sboyte@usgs.gov","middleInitial":"P.","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":false,"id":729821,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bradford, John B. 0000-0001-9257-6303 jbradford@usgs.gov","orcid":"https://orcid.org/0000-0001-9257-6303","contributorId":611,"corporation":false,"usgs":true,"family":"Bradford","given":"John","email":"jbradford@usgs.gov","middleInitial":"B.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":729822,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Brunson, Ed","contributorId":191021,"corporation":false,"usgs":false,"family":"Brunson","given":"Ed","email":"","affiliations":[],"preferred":false,"id":729823,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Cissel, John H.","contributorId":24035,"corporation":false,"usgs":false,"family":"Cissel","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":729824,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Conway, Courtney J. 0000-0003-0492-2953 cconway@usgs.gov","orcid":"https://orcid.org/0000-0003-0492-2953","contributorId":2951,"corporation":false,"usgs":true,"family":"Conway","given":"Courtney","email":"cconway@usgs.gov","middleInitial":"J.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":729825,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Chalfoun, Anna D. achalfoun@usgs.gov","contributorId":3735,"corporation":false,"usgs":true,"family":"Chalfoun","given":"Anna","email":"achalfoun@usgs.gov","middleInitial":"D.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":false,"id":729826,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Chambers, Jeanne C.","contributorId":92186,"corporation":false,"usgs":true,"family":"Chambers","given":"Jeanne","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":729827,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Clark, Patrick","contributorId":6951,"corporation":false,"usgs":true,"family":"Clark","given":"Patrick","email":"","affiliations":[],"preferred":false,"id":729828,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Coates, Peter S. 0000-0003-2672-9994 pcoates@usgs.gov","orcid":"https://orcid.org/0000-0003-2672-9994","contributorId":3263,"corporation":false,"usgs":true,"family":"Coates","given":"Peter","email":"pcoates@usgs.gov","middleInitial":"S.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":729829,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Crist, Michele R. mcrist@usgs.gov","contributorId":146831,"corporation":false,"usgs":true,"family":"Crist","given":"Michele","email":"mcrist@usgs.gov","middleInitial":"R.","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":false,"id":729830,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Davis, Dawn M.","contributorId":81003,"corporation":false,"usgs":true,"family":"Davis","given":"Dawn","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":729831,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"DeCrappeo, Nicole 0000-0002-6928-8853 ndecrappeo@usgs.gov","orcid":"https://orcid.org/0000-0002-6928-8853","contributorId":1939,"corporation":false,"usgs":true,"family":"DeCrappeo","given":"Nicole","email":"ndecrappeo@usgs.gov","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":true,"id":729832,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Deibert, Patricia A.","contributorId":127500,"corporation":false,"usgs":false,"family":"Deibert","given":"Patricia","email":"","middleInitial":"A.","affiliations":[{"id":6678,"text":"U.S. Fish and Wildlife Service, Alaska Maritime National Wildlife Refuge","active":true,"usgs":false}],"preferred":false,"id":729833,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Doherty, Kevin E.","contributorId":99490,"corporation":false,"usgs":true,"family":"Doherty","given":"Kevin E.","affiliations":[],"preferred":false,"id":729834,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Evers, Louisa B.","contributorId":191028,"corporation":false,"usgs":false,"family":"Evers","given":"Louisa","email":"","middleInitial":"B.","affiliations":[],"preferred":false,"id":729835,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Finch, Deborah M.","contributorId":59894,"corporation":false,"usgs":true,"family":"Finch","given":"Deborah","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":729836,"contributorType":{"id":1,"text":"Authors"},"rank":19},{"text":"Finn, Sean P.","contributorId":106623,"corporation":false,"usgs":true,"family":"Finn","given":"Sean","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":729837,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Germino, Matthew J. 0000-0001-6326-7579 mgermino@usgs.gov","orcid":"https://orcid.org/0000-0001-6326-7579","contributorId":3298,"corporation":false,"usgs":true,"family":"Germino","given":"Matthew","email":"mgermino@usgs.gov","middleInitial":"J.","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":false,"id":729838,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Glenn, Nancy F.","contributorId":95321,"corporation":false,"usgs":true,"family":"Glenn","given":"Nancy","email":"","middleInitial":"F.","affiliations":[{"id":16201,"text":"Boise State University","active":true,"usgs":false}],"preferred":false,"id":729839,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"Gucker, Corey","contributorId":191029,"corporation":false,"usgs":false,"family":"Gucker","given":"Corey","email":"","affiliations":[],"preferred":false,"id":729840,"contributorType":{"id":1,"text":"Authors"},"rank":23},{"text":"Hall, John A.","contributorId":75020,"corporation":false,"usgs":true,"family":"Hall","given":"John","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":729841,"contributorType":{"id":1,"text":"Authors"},"rank":24},{"text":"Hanser, Steven E. 0000-0002-4430-2073 shanser@usgs.gov","orcid":"https://orcid.org/0000-0002-4430-2073","contributorId":3020,"corporation":false,"usgs":true,"family":"Hanser","given":"Steven E.","email":"shanser@usgs.gov","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":false,"id":729842,"contributorType":{"id":1,"text":"Authors"},"rank":25},{"text":"Havlina, Douglas W.","contributorId":177567,"corporation":false,"usgs":false,"family":"Havlina","given":"Douglas","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":729843,"contributorType":{"id":1,"text":"Authors"},"rank":26},{"text":"Heinrichs, Julie A. 0000-0001-7733-5034 jheinrichs@usgs.gov","orcid":"https://orcid.org/0000-0001-7733-5034","contributorId":193742,"corporation":false,"usgs":true,"family":"Heinrichs","given":"Julie","email":"jheinrichs@usgs.gov","middleInitial":"A.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":729844,"contributorType":{"id":1,"text":"Authors"},"rank":27},{"text":"Heller, Matt","contributorId":202834,"corporation":false,"usgs":false,"family":"Heller","given":"Matt","email":"","affiliations":[],"preferred":false,"id":729845,"contributorType":{"id":1,"text":"Authors"},"rank":28},{"text":"Homer, Collin G. 0000-0003-4755-8135 homer@usgs.gov","orcid":"https://orcid.org/0000-0003-4755-8135","contributorId":2262,"corporation":false,"usgs":true,"family":"Homer","given":"Collin","email":"homer@usgs.gov","middleInitial":"G.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":729846,"contributorType":{"id":1,"text":"Authors"},"rank":29},{"text":"Hunter, Molly E.","contributorId":191026,"corporation":false,"usgs":false,"family":"Hunter","given":"Molly","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":729847,"contributorType":{"id":1,"text":"Authors"},"rank":30},{"text":"Jacobs, Ruth W. ruth_jacobs@usgs.gov","contributorId":141,"corporation":false,"usgs":true,"family":"Jacobs","given":"Ruth","email":"ruth_jacobs@usgs.gov","middleInitial":"W.","affiliations":[],"preferred":true,"id":729848,"contributorType":{"id":1,"text":"Authors"},"rank":31},{"text":"Karl, Jason W.","contributorId":22616,"corporation":false,"usgs":true,"family":"Karl","given":"Jason W.","affiliations":[],"preferred":false,"id":729849,"contributorType":{"id":1,"text":"Authors"},"rank":32},{"text":"Kearney, Richard","contributorId":191027,"corporation":false,"usgs":false,"family":"Kearney","given":"Richard","email":"","affiliations":[],"preferred":false,"id":729850,"contributorType":{"id":1,"text":"Authors"},"rank":33},{"text":"Kemp, Susan K 0000-0002-8183-5741 skemp@usgs.gov","orcid":"https://orcid.org/0000-0002-8183-5741","contributorId":5889,"corporation":false,"usgs":true,"family":"Kemp","given":"Susan","email":"skemp@usgs.gov","middleInitial":"K","affiliations":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"preferred":true,"id":729851,"contributorType":{"id":1,"text":"Authors"},"rank":34},{"text":"Kilkenny, Francis F.","contributorId":191031,"corporation":false,"usgs":false,"family":"Kilkenny","given":"Francis","email":"","middleInitial":"F.","affiliations":[],"preferred":false,"id":729852,"contributorType":{"id":1,"text":"Authors"},"rank":35},{"text":"Knick, Steven T. 0000-0003-4025-1704 steve_knick@usgs.gov","orcid":"https://orcid.org/0000-0003-4025-1704","contributorId":159,"corporation":false,"usgs":true,"family":"Knick","given":"Steven","email":"steve_knick@usgs.gov","middleInitial":"T.","affiliations":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true},{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":true,"id":729853,"contributorType":{"id":1,"text":"Authors"},"rank":36},{"text":"Launchbaugh, Karen","contributorId":55528,"corporation":false,"usgs":true,"family":"Launchbaugh","given":"Karen","email":"","affiliations":[],"preferred":false,"id":729854,"contributorType":{"id":1,"text":"Authors"},"rank":37},{"text":"Manier, Daniel J. 0000-0002-1105-1327 manierd@usgs.gov","orcid":"https://orcid.org/0000-0002-1105-1327","contributorId":4589,"corporation":false,"usgs":true,"family":"Manier","given":"Daniel","email":"manierd@usgs.gov","middleInitial":"J.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":false,"id":729855,"contributorType":{"id":1,"text":"Authors"},"rank":38},{"text":"Mayer, Kenneth E. ","contributorId":177568,"corporation":false,"usgs":false,"family":"Mayer","given":"Kenneth E. ","affiliations":[],"preferred":false,"id":729856,"contributorType":{"id":1,"text":"Authors"},"rank":39},{"text":"Meyer, Susan E.","contributorId":20251,"corporation":false,"usgs":true,"family":"Meyer","given":"Susan","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":729857,"contributorType":{"id":1,"text":"Authors"},"rank":40},{"text":"Monroe, Adrian P. 0000-0003-0934-8225 amonroe@usgs.gov","orcid":"https://orcid.org/0000-0003-0934-8225","contributorId":152209,"corporation":false,"usgs":true,"family":"Monroe","given":"Adrian P.","email":"amonroe@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":729858,"contributorType":{"id":1,"text":"Authors"},"rank":41},{"text":"MontBlanc, Eugenie","contributorId":191032,"corporation":false,"usgs":false,"family":"MontBlanc","given":"Eugenie","email":"","affiliations":[],"preferred":false,"id":729859,"contributorType":{"id":1,"text":"Authors"},"rank":42},{"text":"Newingham, Beth A.","contributorId":195932,"corporation":false,"usgs":false,"family":"Newingham","given":"Beth","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":729860,"contributorType":{"id":1,"text":"Authors"},"rank":43},{"text":"Pellant, Michael L.","contributorId":24436,"corporation":false,"usgs":true,"family":"Pellant","given":"Michael","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":729861,"contributorType":{"id":1,"text":"Authors"},"rank":44},{"text":"Phillips, Susan L. 0000-0002-5891-8485 sue_phillips@usgs.gov","orcid":"https://orcid.org/0000-0002-5891-8485","contributorId":717,"corporation":false,"usgs":true,"family":"Phillips","given":"Susan","email":"sue_phillips@usgs.gov","middleInitial":"L.","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":false,"id":729862,"contributorType":{"id":1,"text":"Authors"},"rank":45},{"text":"Pilliod, David S. 0000-0003-4207-3518 dpilliod@usgs.gov","orcid":"https://orcid.org/0000-0003-4207-3518","contributorId":147050,"corporation":false,"usgs":true,"family":"Pilliod","given":"David S.","email":"dpilliod@usgs.gov","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":false,"id":729863,"contributorType":{"id":1,"text":"Authors"},"rank":46},{"text":"Ricca, Mark A. mark_ricca@usgs.gov","contributorId":2400,"corporation":false,"usgs":true,"family":"Ricca","given":"Mark","email":"mark_ricca@usgs.gov","middleInitial":"A.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":729864,"contributorType":{"id":1,"text":"Authors"},"rank":47},{"text":"Richardson, Bryce A.","contributorId":37249,"corporation":false,"usgs":true,"family":"Richardson","given":"Bryce A.","affiliations":[],"preferred":false,"id":729865,"contributorType":{"id":1,"text":"Authors"},"rank":48},{"text":"Rose, Jeffrey A.","contributorId":191033,"corporation":false,"usgs":false,"family":"Rose","given":"Jeffrey","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":729866,"contributorType":{"id":1,"text":"Authors"},"rank":49},{"text":"Shaw, Nancy","contributorId":138492,"corporation":false,"usgs":false,"family":"Shaw","given":"Nancy","email":"","affiliations":[{"id":6684,"text":"USDA Forest Service, Southern Research Station, Aiken, SC","active":true,"usgs":false}],"preferred":false,"id":729867,"contributorType":{"id":1,"text":"Authors"},"rank":50},{"text":"Sheley, Roger L.","contributorId":167296,"corporation":false,"usgs":false,"family":"Sheley","given":"Roger","email":"","middleInitial":"L.","affiliations":[{"id":24676,"text":"USDA-ARS, Burns Oregon","active":true,"usgs":false}],"preferred":false,"id":729868,"contributorType":{"id":1,"text":"Authors"},"rank":51},{"text":"Shinneman, Douglas J. dshinneman@usgs.gov","contributorId":4143,"corporation":false,"usgs":true,"family":"Shinneman","given":"Douglas J.","email":"dshinneman@usgs.gov","affiliations":[],"preferred":false,"id":729869,"contributorType":{"id":1,"text":"Authors"},"rank":52},{"text":"Wiechman, Lief A. 0000-0002-3804-4426","orcid":"https://orcid.org/0000-0002-3804-4426","contributorId":184047,"corporation":false,"usgs":true,"family":"Wiechman","given":"Lief","email":"","middleInitial":"A.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":729870,"contributorType":{"id":1,"text":"Authors"},"rank":53},{"text":"Wylie, Bruce K. 0000-0002-7374-1083 wylie@usgs.gov","orcid":"https://orcid.org/0000-0002-7374-1083","contributorId":750,"corporation":false,"usgs":true,"family":"Wylie","given":"Bruce","email":"wylie@usgs.gov","middleInitial":"K.","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true},{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":729871,"contributorType":{"id":1,"text":"Authors"},"rank":54}]}}
,{"id":70180370,"text":"70180370 - 2016 - Protecting national parks from air pollution effects: Making sausage from science and policy","interactions":[],"lastModifiedDate":"2017-01-31T14:27:20","indexId":"70180370","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Protecting national parks from air pollution effects: Making sausage from science and policy","docAbstract":"The story of air pollution research, policy development, and management in national parks is a fascinating blend of cultural change, vision, interdisciplinary and interagency collaboration, and science-policy-management-stakeholder collaborations. Unable to ignore the loss of iconic vistas from regional haze and loss of fish from acid rain in the 1980s, the National Park Service (NPS) embraced an obligation to protect resources from threats originating outside park boundaries. Upholding the Organic Act requirement for parks to remain \"unimpaired\" for the enjoyment of future generations, and using the Clean Air Act statement that NPS has an “affirmative responsibility” to protect park resources, NPS has supported, and effectively used, research as a means to protect lands, waters, and vistas from a mostly unseen threat. Using visibility and atmospheric nitrogen deposition as examples, we will illustrate some success stories where NPS led the way to benefit not only parks, but the Nation.","language":"English","publisher":"University of Chicago Press","usgsCitation":"Baron, J., Blett, T., Malm, W.C., Alexander, R., and Doremus, H., 2016, Protecting national parks from air pollution effects: Making sausage from science and policy, p. 151-169.","productDescription":"19 p.","startPage":"151","endPage":"169","ipdsId":"IP-065116","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":334492,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":334490,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://press.uchicago.edu/ucp/books/book/chicago/S/bo25126049.html"}],"publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5891b0a8e4b072a7ac1298f1","contributors":{"authors":[{"text":"Baron, Jill S. 0000-0002-5902-6251 jill_baron@usgs.gov","orcid":"https://orcid.org/0000-0002-5902-6251","contributorId":174080,"corporation":false,"usgs":true,"family":"Baron","given":"Jill S.","email":"jill_baron@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":false,"id":661411,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Blett, Tamara","contributorId":178864,"corporation":false,"usgs":false,"family":"Blett","given":"Tamara","affiliations":[],"preferred":false,"id":661412,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Malm, William C.","contributorId":178865,"corporation":false,"usgs":false,"family":"Malm","given":"William","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":661413,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Alexander, Ruth","contributorId":178866,"corporation":false,"usgs":false,"family":"Alexander","given":"Ruth","email":"","affiliations":[],"preferred":false,"id":661414,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Doremus, Holly","contributorId":179009,"corporation":false,"usgs":false,"family":"Doremus","given":"Holly","email":"","affiliations":[],"preferred":false,"id":662067,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70180390,"text":"70180390 - 2016 - Dissolved organic matter composition of Arctic rivers: Linking permafrost and parent material to riverine carbon","interactions":[],"lastModifiedDate":"2017-01-30T09:36:37","indexId":"70180390","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1836,"text":"Global Biogeochemical Cycles","active":true,"publicationSubtype":{"id":10}},"title":"Dissolved organic matter composition of Arctic rivers: Linking permafrost and parent material to riverine carbon","docAbstract":"<p><span>Recent climate change in the Arctic is driving permafrost thaw, which has important implications for regional hydrology and global carbon dynamics. Permafrost is an important control on groundwater dynamics and the amount and chemical composition of dissolved organic matter (DOM) transported by high-latitude rivers. The consequences of permafrost thaw for riverine DOM dynamics will likely vary across space and time, due in part to spatial variation in ecosystem properties in Arctic watersheds. Here we examined watershed controls on DOM composition in 69 streams and rivers draining heterogeneous landscapes across a broad region of Arctic Alaska. We characterized DOM using bulk dissolved organic carbon (DOC) concentration, optical properties, and chemical fractionation and classified watersheds based on permafrost characteristics (mapping of parent material and ground ice content, modeling of thermal state) and ecotypes. Parent material and ground ice content significantly affected the amount and composition of DOM. DOC concentrations were higher in watersheds underlain by fine-grained loess compared to watersheds underlain by coarse-grained sand or shallow bedrock. DOC concentration was also higher in rivers draining ice-rich landscapes compared to rivers draining ice-poor landscapes. Similarly, specific ultraviolet absorbance (SUVA</span><sub>254</sub><span>, an index of DOM aromaticity) values were highest in watersheds underlain by fine-grained deposits or ice-rich permafrost. We also observed differences in hydrophobic organic acids, hydrophilic compounds, and DOM fluorescence across watersheds. Both DOC concentration and SUVA</span><sub>254</sub><span> were negatively correlated with watershed active layer thickness, as determined by high-resolution permafrost modeling. Together, these findings highlight how spatial variations in permafrost physical and thermal properties can influence riverine DOM.</span></p>","language":"English","publisher":"AGU Publications","doi":"10.1002/2016GB005482","usgsCitation":"O’Donnell, J.A., Aiken, G.R., Swanson, D.K., Santosh, P., Butler, K.D., and Baltensperger, A.P., 2016, Dissolved organic matter composition of Arctic rivers: Linking permafrost and parent material to riverine carbon: Global Biogeochemical Cycles, v. 30, no. 12, p. 1811-1826, https://doi.org/10.1002/2016GB005482.","productDescription":"16 p","startPage":"1811","endPage":"1826","ipdsId":"IP-081691","costCenters":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"links":[{"id":470284,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/2016gb005482","text":"Publisher Index Page"},{"id":334279,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"30","issue":"12","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2016-12-19","publicationStatus":"PW","scienceBaseUri":"58905ef1e4b072a7ac0cad35","contributors":{"authors":[{"text":"O’Donnell, Jonathan A.","contributorId":178151,"corporation":false,"usgs":false,"family":"O’Donnell","given":"Jonathan","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":661502,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Aiken, George R. 0000-0001-8454-0984 graiken@usgs.gov","orcid":"https://orcid.org/0000-0001-8454-0984","contributorId":1322,"corporation":false,"usgs":true,"family":"Aiken","given":"George","email":"graiken@usgs.gov","middleInitial":"R.","affiliations":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true},{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":661501,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Swanson, David K.","contributorId":178902,"corporation":false,"usgs":false,"family":"Swanson","given":"David","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":661503,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Santosh, Panda","contributorId":178903,"corporation":false,"usgs":false,"family":"Santosh","given":"Panda","email":"","affiliations":[],"preferred":false,"id":661504,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Butler, Kenna D. 0000-0001-9604-4603 kebutler@usgs.gov","orcid":"https://orcid.org/0000-0001-9604-4603","contributorId":178885,"corporation":false,"usgs":true,"family":"Butler","given":"Kenna","email":"kebutler@usgs.gov","middleInitial":"D.","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":661506,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Baltensperger, Andrew P.","contributorId":178904,"corporation":false,"usgs":false,"family":"Baltensperger","given":"Andrew","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":661505,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70192029,"text":"70192029 - 2016 - Mapping presence and predicting phenological status of invasive buffelgrass in southern Arizona using MODIS, climate and citizen science observation data","interactions":[],"lastModifiedDate":"2017-10-24T13:55:10","indexId":"70192029","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3250,"text":"Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Mapping presence and predicting phenological status of invasive buffelgrass in southern Arizona using MODIS, climate and citizen science observation data","docAbstract":"<p><span>The increasing spread and abundance of an invasive perennial grass, buffelgrass (</span><i>Pennisetum ciliare</i><span>), represents a critical threat to the native vegetation communities of the Sonoran desert in southern Arizona, USA, where buffelgrass eradication is a high priority for resource managers. Herbicidal treatment of buffelgrass is most effective when the vegetation is actively growing, but the remoteness of infestations and the erratic timing and length of the species’ growth periods confound effective treatment. The goal of our research is to promote buffelgrass management by using remote sensing data to detect where the invasive plants are located and when they are photosynthetically active. We integrated citizen scientist observations of buffelgrass phenology in the Tucson, Arizona area with PRISM precipitation data, eight-day composites of 250-m Moderate-resolution Imaging Spectroradiometer (MODIS) satellite imagery, and aerially-mapped polygons of buffelgrass presence to understand dynamics and relationships between precipitation and the timing and amount of buffelgrass greenness from 2011 to 2013. Our results show that buffelgrass responds quickly to antecedent rainfall: in pixels containing buffelgrass, higher correlations (R</span><sup>2</sup><span><span>&nbsp;</span>&gt; 0.5) typically occur after two cumulative eight-day periods of rain, whereas in pixels dominated by native vegetation, four prior 8-day periods are required to reach that threshold. Using the new suite of phenometrics introduced here—Climate Landscape Response metrics—we accurately predicted the location of 49% to 55% of buffelgrass patches in Saguaro National Park. These metrics and the suggested guidelines for their use can be employed by resource managers to treat buffelgrass during optimal time periods.</span></p>","language":"English","publisher":"MDPI","doi":"10.3390/rs8070524","usgsCitation":"Wallace, C., Walker, J.J., Skirvin, S.M., Patrick-Birdwell, C., Weltzin, J., and Raichle, H., 2016, Mapping presence and predicting phenological status of invasive buffelgrass in southern Arizona using MODIS, climate and citizen science observation data: Remote Sensing, v. 8, no. 7, p. 1-24, https://doi.org/10.3390/rs8070524.","productDescription":"Article 524; 24 p.","startPage":"1","endPage":"24","ipdsId":"IP-072868","costCenters":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"links":[{"id":470294,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/rs8070524","text":"Publisher Index Page"},{"id":347245,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arizona","city":"Tucson","otherGeospatial":"Saguaro National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -111.22421264648438,\n              32.04416879077791\n            ],\n            [\n              -110.41534423828124,\n              32.04416879077791\n            ],\n            [\n              -110.41534423828124,\n              32.36488325846306\n            ],\n            [\n              -111.22421264648438,\n              32.36488325846306\n            ],\n            [\n              -111.22421264648438,\n              32.04416879077791\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"8","issue":"7","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-24","publicationStatus":"PW","scienceBaseUri":"59f05123e4b0220bbd9a1dab","contributors":{"authors":[{"text":"Wallace, Cynthia S.A. cwallace@usgs.gov","contributorId":139089,"corporation":false,"usgs":true,"family":"Wallace","given":"Cynthia S.A.","email":"cwallace@usgs.gov","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":false,"id":713880,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Walker, Jessica J. 0000-0002-3225-0317 jjwalker@usgs.gov","orcid":"https://orcid.org/0000-0002-3225-0317","contributorId":169458,"corporation":false,"usgs":true,"family":"Walker","given":"Jessica","email":"jjwalker@usgs.gov","middleInitial":"J.","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":713881,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Skirvin, Susan M.","contributorId":197598,"corporation":false,"usgs":false,"family":"Skirvin","given":"Susan","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":713882,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Patrick-Birdwell, Caroline","contributorId":197599,"corporation":false,"usgs":false,"family":"Patrick-Birdwell","given":"Caroline","email":"","affiliations":[],"preferred":false,"id":713883,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Weltzin, Jake F. jweltzin@usgs.gov","contributorId":195442,"corporation":false,"usgs":true,"family":"Weltzin","given":"Jake F.","email":"jweltzin@usgs.gov","affiliations":[{"id":137,"text":"Biomonitoring of Environmental Status and Trends Program","active":false,"usgs":true}],"preferred":false,"id":713884,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Raichle, Helen","contributorId":197600,"corporation":false,"usgs":false,"family":"Raichle","given":"Helen","affiliations":[],"preferred":false,"id":713885,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70192155,"text":"70192155 - 2016 - Mineral resources: Reserves, peak production and the future","interactions":[],"lastModifiedDate":"2018-03-27T17:26:10","indexId":"70192155","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5507,"text":"Resources","printIssn":"2079-9276","active":true,"publicationSubtype":{"id":10}},"title":"Mineral resources: Reserves, peak production and the future","docAbstract":"<p><span>The adequacy of mineral resources in light of population growth and rising standards of living has been a concern since the time of Malthus (1798), but many studies erroneously forecast impending peak production or exhaustion because they confuse reserves with “all there is”. Reserves are formally defined as a subset of resources, and even current and potential resources are only a small subset of “all there is”. Peak production or exhaustion cannot be modeled accurately from reserves. Using copper as an example, identified resources are twice as large as the amount projected to be needed through 2050. Estimates of yet-to-be discovered copper resources are up to 40-times more than currently-identified resources, amounts that could last for many centuries. Thus, forecasts of imminent peak production due to resource exhaustion in the next 20–30 years are not valid. Short-term supply problems may arise, however, and supply-chain disruptions are possible at any time due to natural disasters (earthquakes, tsunamis, hurricanes) or political complications. Needed to resolve these problems are education and exploration technology development, access to prospective terrain, better recycling and better accounting of externalities associated with production (pollution, loss of ecosystem services and water and energy use).</span></p>","language":"English","publisher":"MDPI","doi":"10.3390/resources5010014","usgsCitation":"Meinert, L.D., Robinson, G., and Nassar, N.T., 2016, Mineral resources: Reserves, peak production and the future: Resources, v. 5, no. 1, Article 14; 14 p., https://doi.org/10.3390/resources5010014.","productDescription":"Article 14; 14 p.","ipdsId":"IP-073442","costCenters":[{"id":387,"text":"Mineral Resources Program","active":true,"usgs":true}],"links":[{"id":470289,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/resources5010014","text":"Publisher Index Page"},{"id":347133,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"5","issue":"1","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2016-02-29","publicationStatus":"PW","scienceBaseUri":"59eeffaae4b0220bbd988fbb","contributors":{"authors":[{"text":"Meinert, Lawrence D. lmeinert@usgs.gov","contributorId":1639,"corporation":false,"usgs":true,"family":"Meinert","given":"Lawrence","email":"lmeinert@usgs.gov","middleInitial":"D.","affiliations":[{"id":387,"text":"Mineral Resources Program","active":true,"usgs":true}],"preferred":true,"id":714470,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Robinson, Gilpin 0000-0002-9676-9564 grobinso@usgs.gov","orcid":"https://orcid.org/0000-0002-9676-9564","contributorId":192163,"corporation":false,"usgs":true,"family":"Robinson","given":"Gilpin","email":"grobinso@usgs.gov","affiliations":[{"id":245,"text":"Eastern Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":false,"id":714471,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Nassar, Nedal T. 0000-0001-8758-9732 nnassar@usgs.gov","orcid":"https://orcid.org/0000-0001-8758-9732","contributorId":197864,"corporation":false,"usgs":true,"family":"Nassar","given":"Nedal","email":"nnassar@usgs.gov","middleInitial":"T.","affiliations":[{"id":432,"text":"National Minerals Information Center","active":true,"usgs":true}],"preferred":true,"id":714472,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70182078,"text":"70182078 - 2016 - Novel picornavirus associated with avian keratin disorder in Alaskan birds","interactions":[],"lastModifiedDate":"2017-02-16T09:46:25","indexId":"70182078","displayToPublicDate":"2017-01-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3819,"text":"mBio","active":true,"publicationSubtype":{"id":10}},"title":"Novel picornavirus associated with avian keratin disorder in Alaskan birds","docAbstract":"<p><span>Avian keratin disorder (AKD), characterized by debilitating overgrowth of the avian beak, was first documented in black-capped chickadees (</span><i>Poecile atricapillus</i><span>) in Alaska. Subsequently, similar deformities have appeared in numerous species across continents. Despite the widespread distribution of this emerging pathology, the cause of AKD remains elusive. As a result, it is unknown whether suspected cases of AKD in the afflicted species are causally linked, and the impacts of this pathology at the population and community levels are difficult to evaluate. We applied unbiased, metagenomic next-generation sequencing to search for candidate pathogens in birds affected with AKD. We identified and sequenced the complete coding region of a novel picornavirus, which we are calling poecivirus. Subsequent screening of 19 AKD-affected black-capped chickadees and 9 control individuals for the presence of poecivirus revealed that 19/19 (100%) AKD-affected individuals were positive, while only 2/9 (22%) control individuals were infected with poecivirus. Two northwestern crows (</span><i>Corvus caurinus</i><span>) and two red-breasted nuthatches (</span><i>Sitta canadensis</i><span>) with AKD-consistent pathology also tested positive for poecivirus. We suggest that poecivirus is a candidate etiological agent of AKD.</span></p>","language":"English","publisher":"American Society for Microbiology","doi":"10.1128/mBio.00874-16","usgsCitation":"Zylberberg, M., Van Hemert, C.R., Dumbacher, J.P., Handel, C.M., Tihan, T., and DeRisi, J.L., 2016, Novel picornavirus associated with avian keratin disorder in Alaskan birds: mBio, v. 7, no. 4, p. 1-10, https://doi.org/10.1128/mBio.00874-16.","productDescription":"e00874-16; 10 p.","startPage":"1","endPage":"10","ipdsId":"IP-074448","costCenters":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"links":[{"id":470285,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1128/mbio.00874-16","text":"Publisher Index Page"},{"id":335677,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"7","issue":"4","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58a6c829e4b025c46428625e","contributors":{"authors":[{"text":"Zylberberg, Maxine","contributorId":181767,"corporation":false,"usgs":false,"family":"Zylberberg","given":"Maxine","email":"","affiliations":[{"id":36629,"text":"University of California","active":true,"usgs":false}],"preferred":false,"id":669472,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Van Hemert, Caroline R. 0000-0002-6858-7165 cvanhemert@usgs.gov","orcid":"https://orcid.org/0000-0002-6858-7165","contributorId":3592,"corporation":false,"usgs":true,"family":"Van Hemert","given":"Caroline","email":"cvanhemert@usgs.gov","middleInitial":"R.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":669471,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dumbacher, John P.","contributorId":172864,"corporation":false,"usgs":false,"family":"Dumbacher","given":"John","email":"","middleInitial":"P.","affiliations":[{"id":12937,"text":"California Academy of Sciences","active":true,"usgs":false}],"preferred":false,"id":669473,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Handel, Colleen M. 0000-0002-0267-7408 cmhandel@usgs.gov","orcid":"https://orcid.org/0000-0002-0267-7408","contributorId":3067,"corporation":false,"usgs":true,"family":"Handel","given":"Colleen","email":"cmhandel@usgs.gov","middleInitial":"M.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":669474,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Tihan, Tarik","contributorId":181768,"corporation":false,"usgs":false,"family":"Tihan","given":"Tarik","email":"","affiliations":[],"preferred":false,"id":669475,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"DeRisi, Joseph L.","contributorId":172863,"corporation":false,"usgs":false,"family":"DeRisi","given":"Joseph","email":"","middleInitial":"L.","affiliations":[{"id":27105,"text":"University of California San Francisco; Howard Hughes Medical Institute","active":true,"usgs":false}],"preferred":false,"id":669476,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
]}