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The objectives of this chapter are to describe the contemporary fisheries habitat throughout the Mississippi River, identify how management to achieve human benefits influences the fishes and their habitats, and summarize efforts to conserve and enhance fish habitat. The 826-km headwater reach is entirely in Minnesota and remains largely unaltered. The reaches that extend 1,059 km from St. Anthony Falls, Minnesota to above the confluence with the Missouri River near St. Louis, Missouri have been altered by impoundment that has affected floodplain function, increased sedimentation of backwaters, and homogenized the formerly diverse aquatic habitats. After the confluence with the Missouri River, the Mississippi River flows freely for 1,849 km to the Gulf of Mexico. The alterations of the free-flowing reaches of greatest significance to the fisheries resource are reducing the duration and height of the flood pulse as a consequence of shortening the river channel, disconnection of the river from its historic and present floodplain, and loss of secondary channel-island complexes. Engineering features to improve commercial navigation have also added habitat and, when wisely manipulated, can be used to rehabilitate habitat. Some aspects of water quality have improved, but legacy chemicals and nutrient-laden inflows and sediments remain problems. Although true restoration in the sense of restoring all environmental conditions to an unaltered state is unlikely, the future value of the Mississippi River as a fisheries resource will depend on actively maintaining diverse and accessible aquatic habitats to support food webs and water quality suitable for fishes.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Fishery Resources, Environment, and Conservation in the Mississippi and Yangtze (Changjiang) River Basins","largerWorkSubtype":{"id":12,"text":"Conference publication"},"language":"English","publisher":"American Fisheries Society","isbn":"978-1-934874-44-8","usgsCitation":"Schramm, H., and Ickes, B., 2016, The Mississippi River: A place for fish, chap. <i>of</i> Fishery Resources, Environment, and Conservation in the Mississippi and Yangtze (Changjiang) River Basins, p. 3-34.","productDescription":"32 p.","startPage":"3","endPage":"34","ipdsId":"IP-057711","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":332293,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":332192,"type":{"id":15,"text":"Index Page"},"url":"https://fisheries.org/bookstore/all-titles/afs-symposia/54084p/"}],"publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58590009e4b03639a6025e2b","contributors":{"editors":[{"text":"Chen, Yushun","contributorId":146569,"corporation":false,"usgs":false,"family":"Chen","given":"Yushun","affiliations":[{"id":12432,"text":"West Virginia University","active":true,"usgs":false}],"preferred":false,"id":656212,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Chapman, Duane 0000-0002-1086-8853 dchapman@usgs.gov","orcid":"https://orcid.org/0000-0002-1086-8853","contributorId":1291,"corporation":false,"usgs":true,"family":"Chapman","given":"Duane","email":"dchapman@usgs.gov","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true},{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":656213,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Jackson, John","contributorId":177556,"corporation":false,"usgs":false,"family":"Jackson","given":"John","affiliations":[],"preferred":false,"id":656214,"contributorType":{"id":2,"text":"Editors"},"rank":3},{"text":"Chen, Daqing","contributorId":173395,"corporation":false,"usgs":false,"family":"Chen","given":"Daqing","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":656215,"contributorType":{"id":2,"text":"Editors"},"rank":4},{"text":"Li, Zhongjie","contributorId":177557,"corporation":false,"usgs":false,"family":"Li","given":"Zhongjie","email":"","affiliations":[],"preferred":false,"id":656216,"contributorType":{"id":2,"text":"Editors"},"rank":5},{"text":"Kilgore, Jack","contributorId":177558,"corporation":false,"usgs":false,"family":"Kilgore","given":"Jack","email":"","affiliations":[],"preferred":false,"id":656217,"contributorType":{"id":2,"text":"Editors"},"rank":6},{"text":"Phelps, Quinton E.","contributorId":173401,"corporation":false,"usgs":false,"family":"Phelps","given":"Quinton","email":"","middleInitial":"E.","affiliations":[{"id":27224,"text":"Big Rivers and Wetlands Field Station, Missouri Department of Conservation, Jackson, MO","active":true,"usgs":false}],"preferred":false,"id":656218,"contributorType":{"id":2,"text":"Editors"},"rank":7},{"text":"Eggleton, Michael","contributorId":177559,"corporation":false,"usgs":false,"family":"Eggleton","given":"Michael","affiliations":[],"preferred":false,"id":656219,"contributorType":{"id":2,"text":"Editors"},"rank":8}],"authors":[{"text":"Schramm, Harold hschramm@usgs.gov","contributorId":149157,"corporation":false,"usgs":true,"family":"Schramm","given":"Harold","email":"hschramm@usgs.gov","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":656031,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ickes, Brian 0000-0001-5622-3842 bickes@usgs.gov","orcid":"https://orcid.org/0000-0001-5622-3842","contributorId":2925,"corporation":false,"usgs":true,"family":"Ickes","given":"Brian","email":"bickes@usgs.gov","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":656030,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70175460,"text":"70175460 - 2016 - Applications for General Purpose Command Buffers: The Emergency Conjunction Avoidance Maneuver","interactions":[],"lastModifiedDate":"2017-01-17T19:14:00","indexId":"70175460","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Applications for General Purpose Command Buffers: The Emergency Conjunction Avoidance Maneuver","docAbstract":"A case study is presented for the use of Relative Operation Sequence (ROS) command buffers to quickly execute a propulsive maneuver to avoid a collision with space debris. In this process, a ROS is custom-built with a burn time and magnitude, uplinked to the spacecraft, and executed in 15 percent of the time of the previous method. This new process provides three primary benefits. First, the planning cycle can be delayed until it is certain a burn must be performed, reducing team workload. Second, changes can be made to the burn parameters almost up to the point of execution while still allowing the normal uplink product review process, reducing the risk of leaving the operational orbit because of outdated burn parameters, and minimizing the chance of accidents from human error, such as missed commands, in a high-stress situation. Third, the science impacts can be customized and minimized around the burn, and in the event of an abort can be eliminated entirely in some circumstances. The result is a compact burn process that can be executed in as few as four hours and can be aborted seconds before execution. Operational, engineering, planning, and flight dynamics perspectives are presented, as well as a functional overview of the code and workflow required to implement the process. Future expansions and capabilities are also discussed.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"SpaceOps 2016 Conference","largerWorkSubtype":{"id":12,"text":"Conference publication"},"conferenceTitle":"SpaceOps 2016 Conference","conferenceDate":"May 16-20, 2016","conferenceLocation":"Daejeon, Korea","language":"English","publisher":"AIAA","doi":"10.2514/6.2016-2416","usgsCitation":"Scheid, R.J., and England, M., 2016, Applications for General Purpose Command Buffers: The Emergency Conjunction Avoidance Maneuver, <i>in</i> SpaceOps 2016 Conference, Daejeon, Korea, May 16-20, 2016, 11 p., https://doi.org/10.2514/6.2016-2416.","productDescription":"11 p.","ipdsId":"IP-075275","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":328129,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationDate":"2016-05-13","publicationStatus":"PW","scienceBaseUri":"57c7ffaee4b0f2f0cebfc21e","contributors":{"authors":[{"text":"Scheid, Robert J","contributorId":173648,"corporation":false,"usgs":false,"family":"Scheid","given":"Robert","email":"","middleInitial":"J","affiliations":[{"id":27268,"text":"Honeywell Technical Services Inc.","active":true,"usgs":false}],"preferred":false,"id":645335,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"England, Martin mengland@usgs.gov","contributorId":173649,"corporation":false,"usgs":true,"family":"England","given":"Martin","email":"mengland@usgs.gov","affiliations":[],"preferred":true,"id":645336,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70175241,"text":"70175241 - 2016 - Bigheaded carps of the Yangtze and Mississippi Rivers: Biology, status, and management","interactions":[],"lastModifiedDate":"2016-08-31T13:46:10","indexId":"70175241","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Bigheaded carps of the Yangtze and Mississippi Rivers: Biology, status, and management","docAbstract":"<p>No abstract available.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Fishery resources, environment, and conservation in the Mississippi and Yangtze (Changjiang) River Basins","largerWorkSubtype":{"id":12,"text":"Conference publication"},"conferenceTitle":"American Fisheries Society Symposia 84","language":"English","publisher":"Americal Fisheries Society","publisherLocation":"Bethseda, MD","usgsCitation":"Chapman, D., Chen, D., Hoover, J.J., Du, H., Phelps, Q.E., Shen, L., Wang, C., Wei, Q., and Zhang, H., 2016, Bigheaded carps of the Yangtze and Mississippi Rivers: Biology, status, and management, <i>in</i> Fishery resources, environment, and conservation in the Mississippi and Yangtze (Changjiang) River Basins, p. 113-126.","productDescription":"14 p.","startPage":"113","endPage":"126","ipdsId":"IP-074103","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":328139,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57c7ffafe4b0f2f0cebfc225","contributors":{"editors":[{"text":"Chen, Y.","contributorId":7019,"corporation":false,"usgs":true,"family":"Chen","given":"Y.","email":"","affiliations":[],"preferred":false,"id":647695,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Chapman, D.C.","contributorId":101825,"corporation":false,"usgs":true,"family":"Chapman","given":"D.C.","email":"","affiliations":[],"preferred":false,"id":647696,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Jackson, J.","contributorId":174192,"corporation":false,"usgs":false,"family":"Jackson","given":"J.","affiliations":[],"preferred":false,"id":647697,"contributorType":{"id":2,"text":"Editors"},"rank":3},{"text":"Chen, D.","contributorId":174193,"corporation":false,"usgs":false,"family":"Chen","given":"D.","affiliations":[],"preferred":false,"id":647698,"contributorType":{"id":2,"text":"Editors"},"rank":4},{"text":"Kilgore, J.","contributorId":174195,"corporation":false,"usgs":false,"family":"Kilgore","given":"J.","email":"","affiliations":[],"preferred":false,"id":647699,"contributorType":{"id":2,"text":"Editors"},"rank":5},{"text":"Phelps, Q.","contributorId":174196,"corporation":false,"usgs":false,"family":"Phelps","given":"Q.","email":"","affiliations":[],"preferred":false,"id":647700,"contributorType":{"id":2,"text":"Editors"},"rank":6},{"text":"Eggleton, M.","contributorId":174197,"corporation":false,"usgs":false,"family":"Eggleton","given":"M.","email":"","affiliations":[],"preferred":false,"id":647701,"contributorType":{"id":2,"text":"Editors"},"rank":7}],"authors":[{"text":"Chapman, Duane 0000-0002-1086-8853 dchapman@usgs.gov","orcid":"https://orcid.org/0000-0002-1086-8853","contributorId":1291,"corporation":false,"usgs":true,"family":"Chapman","given":"Duane","email":"dchapman@usgs.gov","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true},{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":644497,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chen, Daqing","contributorId":173395,"corporation":false,"usgs":false,"family":"Chen","given":"Daqing","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":644498,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hoover, Jan J.","contributorId":173400,"corporation":false,"usgs":false,"family":"Hoover","given":"Jan","email":"","middleInitial":"J.","affiliations":[{"id":27223,"text":"U. 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Army Engineer Research and Development Center, Vicksburg, MS","active":true,"usgs":false}],"preferred":false,"id":644503,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Du, Hao","contributorId":173396,"corporation":false,"usgs":false,"family":"Du","given":"Hao","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":644499,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Phelps, Quinton E.","contributorId":173401,"corporation":false,"usgs":false,"family":"Phelps","given":"Quinton","email":"","middleInitial":"E.","affiliations":[{"id":27224,"text":"Big Rivers and Wetlands Field Station, Missouri Department of Conservation, Jackson, MO","active":true,"usgs":false}],"preferred":false,"id":644504,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Shen, Li","contributorId":173402,"corporation":false,"usgs":false,"family":"Shen","given":"Li","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":644505,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Wang, Chenyou","contributorId":173397,"corporation":false,"usgs":false,"family":"Wang","given":"Chenyou","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":644500,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Wei, Qiwei","contributorId":173398,"corporation":false,"usgs":false,"family":"Wei","given":"Qiwei","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":644501,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Zhang, Hui","contributorId":173399,"corporation":false,"usgs":false,"family":"Zhang","given":"Hui","email":"","affiliations":[{"id":27222,"text":"Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences","active":true,"usgs":false}],"preferred":false,"id":644502,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70184321,"text":"70184321 - 2016 - Synchrony of Piping Plover breeding populations in the U.S. Northern Great Plains","interactions":[],"lastModifiedDate":"2017-03-07T16:01:37","indexId":"70184321","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1318,"text":"Condor","active":true,"publicationSubtype":{"id":10}},"title":"Synchrony of Piping Plover breeding populations in the U.S. Northern Great Plains","docAbstract":"<p><span>Local populations that fluctuate synchronously are at a greater risk of extinction than those that do not. The closer the geographic proximity of populations, the more prone they are to synchronizing. Shorebird species select habitat broadly, and many breed across regions with diverse nesting habitat types. Under these conditions, nearby populations may experience conditions sufficiently different to prevent population synchrony, despite dispersal. In the U.S. Northern Great Plains, the Piping Plover (</span><i><i>Charadrius melodus</i></i><span>), federally listed as Threatened, is a migratory shorebird species that nests on the shorelines of rivers, reservoirs, and alkaline lakes. We assessed the degree to which local plover breeding population abundances were correlated (population synchrony), changed over time (population stability), and were influenced by environmental factors such as available habitat, precipitation, and within-season reservoir level rise. We found that the abundances of breeding populations nesting in riverine and reservoir habitats were the most synchronous, while populations nesting in alkaline lake habitats exhibited the greatest stability. Changes in local breeding population abundances were not explained by a single factor across habitat types. However, the abundances of local populations nesting in alkaline lake and river shoreline habitats were positively correlated with changes in nesting habitat availability. Our results suggest that dispersal among populations nesting in either river or reservoir and alkaline lake shoreline habitat may have an overall stabilizing effect on the persistence of the Great Plains Piping Plover metapopulation.</span></p>","language":"English","publisher":"American Ornithological Society","doi":"10.1650/CONDOR-15-195.1","usgsCitation":"Roche, E.A., Shaffer, T.L., Dovichin, C.M., Sherfy, M.H., Anteau, M.J., and Wiltermuth, M.T., 2016, Synchrony of Piping Plover breeding populations in the U.S. Northern Great Plains: Condor, v. 118, no. 3, p. 558-570, https://doi.org/10.1650/CONDOR-15-195.1.","productDescription":"13 p.","startPage":"558","endPage":"570","ipdsId":"IP-070511","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":482074,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1650/condor-15-195.1","text":"Publisher Index Page"},{"id":336977,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"118","issue":"3","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4bd","contributors":{"authors":[{"text":"Roche, Erin A. eroche@usgs.gov","contributorId":5558,"corporation":false,"usgs":true,"family":"Roche","given":"Erin","email":"eroche@usgs.gov","middleInitial":"A.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681001,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Shaffer, Terry L. 0000-0001-6950-8951 tshaffer@usgs.gov","orcid":"https://orcid.org/0000-0001-6950-8951","contributorId":3192,"corporation":false,"usgs":true,"family":"Shaffer","given":"Terry","email":"tshaffer@usgs.gov","middleInitial":"L.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681002,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dovichin, Colin M. 0000-0002-9325-5779 cdovichin@usgs.gov","orcid":"https://orcid.org/0000-0002-9325-5779","contributorId":4505,"corporation":false,"usgs":true,"family":"Dovichin","given":"Colin","email":"cdovichin@usgs.gov","middleInitial":"M.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681003,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sherfy, Mark H. 0000-0003-3016-4105 msherfy@usgs.gov","orcid":"https://orcid.org/0000-0003-3016-4105","contributorId":125,"corporation":false,"usgs":true,"family":"Sherfy","given":"Mark","email":"msherfy@usgs.gov","middleInitial":"H.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681004,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Anteau, Michael J. 0000-0002-5173-5870 manteau@usgs.gov","orcid":"https://orcid.org/0000-0002-5173-5870","contributorId":3427,"corporation":false,"usgs":true,"family":"Anteau","given":"Michael","email":"manteau@usgs.gov","middleInitial":"J.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681005,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Wiltermuth, Mark T. 0000-0002-8871-2816 mwiltermuth@usgs.gov","orcid":"https://orcid.org/0000-0002-8871-2816","contributorId":708,"corporation":false,"usgs":true,"family":"Wiltermuth","given":"Mark","email":"mwiltermuth@usgs.gov","middleInitial":"T.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true},{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681006,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70184323,"text":"70184323 - 2016 - Transmission of influenza reflects seasonality of wild birds across the annual cycle","interactions":[],"lastModifiedDate":"2018-06-20T20:24:49","indexId":"70184323","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1466,"text":"Ecology Letters","active":true,"publicationSubtype":{"id":10}},"title":"Transmission of influenza reflects seasonality of wild birds across the annual cycle","docAbstract":"<p><span>Influenza A Viruses (IAV) in nature must overcome shifting transmission barriers caused by the mobility of their primary host, migratory wild birds, that change throughout the annual cycle. Using a phylogenetic network of viral sequences from North American wild birds (2008–2011) we demonstrate a shift from intraspecific to interspecific transmission that along with reassortment, allows IAV to achieve viral flow across successive seasons from summer to winter. Our study supports amplification of IAV during summer breeding seeded by overwintering virus persisting locally and virus introduced from a wide range of latitudes. As birds migrate from breeding sites to lower latitudes, they become involved in transmission networks with greater connectivity to other bird species, with interspecies transmission of reassortant viruses peaking during the winter. We propose that switching transmission dynamics may be a critical strategy for pathogens that infect mobile hosts inhabiting regions with strong seasonality.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/ele.12629","usgsCitation":"Hill, N., Meixell, B.W., Ma, E.J., Lindberg, M., Boyce, W.M., and Runstadler, J.A., 2016, Transmission of influenza reflects seasonality of wild birds across the annual cycle: Ecology Letters, v. 19, no. 8, p. 915-925, https://doi.org/10.1111/ele.12629.","productDescription":"11 p.","startPage":"915","endPage":"925","ipdsId":"IP-068582","costCenters":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"links":[{"id":336975,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"19","issue":"8","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-21","publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4b8","contributors":{"authors":[{"text":"Hill, Nichola J.","contributorId":30342,"corporation":false,"usgs":true,"family":"Hill","given":"Nichola J.","affiliations":[],"preferred":false,"id":681083,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Meixell, Brandt W. 0000-0002-6738-0349 bmeixell@usgs.gov","orcid":"https://orcid.org/0000-0002-6738-0349","contributorId":138716,"corporation":false,"usgs":true,"family":"Meixell","given":"Brandt","email":"bmeixell@usgs.gov","middleInitial":"W.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":681085,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ma, Eric J.","contributorId":177788,"corporation":false,"usgs":false,"family":"Ma","given":"Eric","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":681084,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lindberg, Mark S.","contributorId":89466,"corporation":false,"usgs":false,"family":"Lindberg","given":"Mark S.","affiliations":[{"id":6752,"text":"University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":681086,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Boyce, Walter M.","contributorId":75671,"corporation":false,"usgs":true,"family":"Boyce","given":"Walter","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":681087,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Runstadler, Jonathan A.","contributorId":24706,"corporation":false,"usgs":false,"family":"Runstadler","given":"Jonathan","email":"","middleInitial":"A.","affiliations":[{"id":12444,"text":"Massachusetts Institute of Technology","active":true,"usgs":false}],"preferred":false,"id":681088,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70184366,"text":"70184366 - 2016 - Effects of spray-dried Pseudomonas fluorescens, strain CL145A (Zequanox®) on reproduction and early development of the fathead minnow (Pimephales promelas).","interactions":[],"lastModifiedDate":"2017-03-16T10:55:20","indexId":"70184366","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":9,"text":"Other Report"},"title":"Effects of spray-dried Pseudomonas fluorescens, strain CL145A (Zequanox®) on reproduction and early development of the fathead minnow (Pimephales promelas).","docAbstract":"The biopesticide, Zequanox®, is registered for dreissenid mussel control in open water systems. Previous toxicity trials with nontarget organisms, including young-of-the year of several fish species and invertebrates, demonstrated selectivity of Zequanox for dreissenids. However, data are lacking on its safety to reproductive and early life stages of fish. The present study evaluated the effects of Zequanox on spawning and early life stages of the fathead minnow, Pimephales promelas, at the maximum approved concentration (100 mg Zequanox active ingredient /L) and exposure duration (8 h) for open water application. The results showed no significant effect of Zequanox on survival, condition, or cumulative egg deposition (21 d) in adult fathead minnow. Eggs (<24-h old) exposed to Zequanox developed to the eyed-stage at a similar rate to that of unexposed eggs. Additionally, Zequanox did not have a significant effect on survival and growth (90 d) of newly hatched fry (<24-h old). The results indicate that Zequanox treatment will not affect survival, spawning, and early life development of fathead minnows when applied at the recommended treatment regime.","language":"English","publisher":"Legislative-Citizen Commission on Minnesota Resources (LCCMR)","usgsCitation":"Waller, D.L., and Luoma, J.A., 2016, Effects of spray-dried Pseudomonas fluorescens, strain CL145A (Zequanox®) on reproduction and early development of the fathead minnow (Pimephales promelas)., iv, 15 p.","productDescription":"iv, 15 p.","numberOfPages":"19","ipdsId":"IP-077767","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":337712,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":337018,"type":{"id":15,"text":"Index Page"},"url":"https://www.lccmr.leg.mn/projects/2013/finals/2013_06f_attachment_2.pdf"}],"publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58cba41be4b0849ce97dc748","contributors":{"authors":[{"text":"Waller, Diane L. 0000-0002-6104-810X dwaller@usgs.gov","orcid":"https://orcid.org/0000-0002-6104-810X","contributorId":5272,"corporation":false,"usgs":true,"family":"Waller","given":"Diane","email":"dwaller@usgs.gov","middleInitial":"L.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":681188,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Luoma, James A. 0000-0003-3556-0190 jluoma@usgs.gov","orcid":"https://orcid.org/0000-0003-3556-0190","contributorId":4449,"corporation":false,"usgs":true,"family":"Luoma","given":"James","email":"jluoma@usgs.gov","middleInitial":"A.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":681189,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70195836,"text":"70195836 - 2016 - Urban base flow with low impact development","interactions":[],"lastModifiedDate":"2018-03-06T11:39:52","indexId":"70195836","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1924,"text":"Hydrological Processes","active":true,"publicationSubtype":{"id":10}},"title":"Urban base flow with low impact development","docAbstract":"<p><span>A novel form of urbanization, low impact development (LID), aims to engineer systems that replicate natural hydrologic functioning, in part by infiltrating stormwater close to the impervious surfaces that generate it. We sought to statistically evaluate changes in a base flow regime because of urbanization with LID, specifically changes in base flow magnitude, seasonality, and rate of change. We used a case study watershed in Clarksburg, Maryland, in which streamflow was monitored during whole-watershed urbanization from forest and agricultural to suburban residential development using LID. The 1.11-km</span><sup>2</sup><span><span>&nbsp;</span>watershed contains 73 infiltration-focused stormwater facilities, including bioretention facilities, dry wells, and dry swales. We examined annual and monthly flow during and after urbanization (2004–2014) and compared alterations to nearby forested and urban control watersheds. We show that total streamflow and base flow increased in the LID watershed during urbanization as compared with control watersheds. The LID watershed had more gradual storm recessions after urbanization and attenuated seasonality in base flow. These flow regime changes may be because of a reduction in evapotranspiration because of the overall decrease in vegetative cover with urbanization and the increase in point sources of recharge. Precipitation that may once have infiltrated soil, been stored in soil moisture to be eventually transpired in a forested landscape, may now be recharged and become base flow. The transfer of evapotranspiration to base flow is an unintended consequence to the water balance of LID.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/hyp.10808","usgsCitation":"Bhaskar, A., Hogan, D.M., and Archfield, S.A., 2016, Urban base flow with low impact development: Hydrological Processes, v. 30, no. 18, p. 3156-3171, https://doi.org/10.1002/hyp.10808.","productDescription":"16 p.","startPage":"3156","endPage":"3171","ipdsId":"IP-069104","costCenters":[{"id":242,"text":"Eastern Geographic Science Center","active":true,"usgs":true}],"links":[{"id":470699,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/hyp.10808","text":"Publisher Index Page"},{"id":352262,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"30","issue":"18","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2016-04-26","publicationStatus":"PW","scienceBaseUri":"5afee9ade4b0da30c1bfc57e","contributors":{"authors":[{"text":"Bhaskar, Aditi abhaskar@usgs.gov","contributorId":146249,"corporation":false,"usgs":true,"family":"Bhaskar","given":"Aditi","email":"abhaskar@usgs.gov","affiliations":[{"id":242,"text":"Eastern Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":730226,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hogan, Dianna M. 0000-0003-1492-4514 dhogan@usgs.gov","orcid":"https://orcid.org/0000-0003-1492-4514","contributorId":2299,"corporation":false,"usgs":true,"family":"Hogan","given":"Dianna","email":"dhogan@usgs.gov","middleInitial":"M.","affiliations":[{"id":242,"text":"Eastern Geographic Science Center","active":true,"usgs":true}],"preferred":false,"id":730227,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Archfield, Stacey A. 0000-0002-9011-3871 sarch@usgs.gov","orcid":"https://orcid.org/0000-0002-9011-3871","contributorId":1874,"corporation":false,"usgs":true,"family":"Archfield","given":"Stacey","email":"sarch@usgs.gov","middleInitial":"A.","affiliations":[{"id":502,"text":"Office of Surface Water","active":true,"usgs":true},{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true}],"preferred":true,"id":730228,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70182725,"text":"70182725 - 2016 - Comparisons between vs30 and spectral response for 30 sites in Newcastle, Australia from collocated seismic cone penetrometer, active- and passive-source vs data","interactions":[],"lastModifiedDate":"2017-02-27T14:58:55","indexId":"70182725","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1135,"text":"Bulletin of the Seismological Society of America","onlineIssn":"1943-3573","printIssn":"0037-1106","active":true,"publicationSubtype":{"id":10}},"title":"Comparisons between vs30 and spectral response for 30 sites in Newcastle, Australia from collocated seismic cone penetrometer, active- and passive-source vs data","docAbstract":"<p><span>Although the time‐averaged shear‐wave velocity down to 30&nbsp;m depth (</span><i>V</i><sub><i>S</i>30</sub><span>) can be a proxy for estimating earthquake ground‐motion amplification, significant controversy exists about its limitations when used as a single parameter for the prediction of amplification. To examine this question in absence of relevant strong‐motion records, we use a range of different methods to measure the shear‐wave velocity profiles and the resulting theoretical site amplification factors (AFs) for 30 sites in the Newcastle area, Australia, in a series of blind comparison studies. The multimethod approach used here combines past seismic cone penetrometer and spectral analysis of surface‐wave data, with newly acquired horizontal‐to‐vertical spectral ratio, passive‐source surface‐wave spatial autocorrelation (SPAC), refraction microtremor (ReMi), and multichannel analysis of surface‐wave data. The various measurement techniques predicted a range of different AFs. The SPAC and ReMi techniques have the smallest overall deviation from the median AF for the majority of sites. We show that </span><i>V</i><sub><i>S</i>30</sub><span> can be related to spectral response above a period </span><i>T</i><span> of 0.5&nbsp;s but not necessarily with the maximum amplification according to the modeling done based on the measured shear‐wave velocity profiles. Both </span><i>V</i><sub><i>S</i>30</sub><span> and AF values are influenced by the velocity ratio between bedrock and overlying sediments and the presence of surficial thin low‐velocity layers (&lt;2  m thick and &lt;150  m/s), but the velocity ratio is what mostly affects the AF. At 0.2&lt;</span><i>T</i><span>&lt;0.4  s, the AFs are largely controlled by the surficial geology of a particular site. AF maxima are the highest in the hard classes, which is the inverse of the findings used in the Australian Building Code. Only for </span><i>T</i><span>&gt;0.5  s do the amplification curves consistently show higher values for soft site classes and lower for hard classes.</span></p>","language":"English","publisher":"Seismological Society of America","doi":"10.1785/0120150073","usgsCitation":"Volti, T., Burbidge, D., Collins, C., Asten, M.W., Odum, J., Stephenson, W.J., Pascal, C., and Holzschuh, J., 2016, Comparisons between vs30 and spectral response for 30 sites in Newcastle, Australia from collocated seismic cone penetrometer, active- and passive-source vs data: Bulletin of the Seismological Society of America, v. 106, no. 4, p. 1690-1709, https://doi.org/10.1785/0120150073.","productDescription":"20 p. ","startPage":"1690","endPage":"1709","ipdsId":"IP-077685","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":336294,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"106","issue":"4","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2016-07-05","publicationStatus":"PW","scienceBaseUri":"58b548bfe4b01ccd54fddfb0","contributors":{"authors":[{"text":"Volti, Theodora","contributorId":184063,"corporation":false,"usgs":false,"family":"Volti","given":"Theodora","email":"","affiliations":[],"preferred":false,"id":673467,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Burbidge, David","contributorId":184064,"corporation":false,"usgs":false,"family":"Burbidge","given":"David","email":"","affiliations":[],"preferred":false,"id":673468,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Collins, Clive","contributorId":138666,"corporation":false,"usgs":false,"family":"Collins","given":"Clive","email":"","affiliations":[{"id":6672,"text":"former: USGS Southwest Biological Science Center, Colorado Plateau Research Station, Flagstaff, AZ. Current address:  TN-SCORE, Univ of Tennessee, Knoxville, TN, e-mail: jennen@gmail.com","active":true,"usgs":false}],"preferred":false,"id":673469,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Asten, Michael W.","contributorId":184065,"corporation":false,"usgs":false,"family":"Asten","given":"Michael","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":673470,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Odum, Jackson K. 0000-0003-4697-2430 odum@usgs.gov","orcid":"https://orcid.org/0000-0003-4697-2430","contributorId":1365,"corporation":false,"usgs":true,"family":"Odum","given":"Jackson K.","email":"odum@usgs.gov","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673471,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Stephenson, William J. 0000-0001-8699-0786 wstephens@usgs.gov","orcid":"https://orcid.org/0000-0001-8699-0786","contributorId":695,"corporation":false,"usgs":true,"family":"Stephenson","given":"William","email":"wstephens@usgs.gov","middleInitial":"J.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673472,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Pascal, Chris","contributorId":184066,"corporation":false,"usgs":false,"family":"Pascal","given":"Chris","email":"","affiliations":[],"preferred":false,"id":673473,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Holzschuh, Josef","contributorId":184067,"corporation":false,"usgs":false,"family":"Holzschuh","given":"Josef","email":"","affiliations":[],"preferred":false,"id":673474,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70175576,"text":"70175576 - 2016 - Adaptive harvest management for the Svalbard population of pink‐footed geese: 2016 progress summary: Technical Report from DCE – Danish Centre for Environment and Energy, No. 86","interactions":[],"lastModifiedDate":"2016-08-31T11:59:18","indexId":"70175576","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":4,"text":"Other Government Series"},"title":"Adaptive harvest management for the Svalbard population of pink‐footed geese: 2016 progress summary: Technical Report from DCE – Danish Centre for Environment and Energy, No. 86","docAbstract":"This document describes progress to date on the development of an adaptive\r\nharvest management strategy for maintaining the Svalbard population of pink‐footed geese (Anser brachyrhynchus) near their agreed target level (60,000) by providing for sustainable harvests in Norway and Denmark. This report provides an assessment of the most recent monitoring information (1991-2015) and its implications for the harvest management strategy. By combining varying hypotheses about survival and reproduction, a suite of nine models have been developed that represent a wide range of possibilities concerning the extent to which demographic rates are density\r\ndependent or independent. These results suggest that the pink‐footed goose\r\npopulation may have recently experienced a release from density‐dependent\r\nmechanisms, corresponding to the period of most rapid growth in population size. Beginning with the 2016 hunting season, harvest quotas will be prescribed on an annual basis rather than every three years because of the potential to better meet population management objectives. Based on updated model weights, the recent observations of population size (74,800), the proportion of the population comprised of one-year-old birds (0.138), and temperature days in Svalbard (20), the optimal harvest quota for the 2016 hunting season is 25,000. The large increase in quota compared to that during first three years of AHM reflects stakeholders’ desire to reduce population size to the goal of 60,000, recognizing that population size remains relatively high and above-average production is expected in 2016 due to a warm spring.","language":"English","publisher":"Danish Centre for Environment and Energy","usgsCitation":"Johnson, F.A., and Madsen, J., 2016, Adaptive harvest management for the Svalbard population of pink‐footed geese: 2016 progress summary: Technical Report from DCE – Danish Centre for Environment and Energy, No. 86, v. 86, 24 p.","productDescription":"24 p.","ipdsId":"IP-076495","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":328126,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":326644,"type":{"id":15,"text":"Index Page"},"url":"https://dce2.au.dk/pub/TR86.pdf"}],"volume":"86","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57c7ffade4b0f2f0cebfc216","contributors":{"authors":[{"text":"Johnson, Fred A. 0000-0002-5854-3695 fjohnson@usgs.gov","orcid":"https://orcid.org/0000-0002-5854-3695","contributorId":2773,"corporation":false,"usgs":true,"family":"Johnson","given":"Fred","email":"fjohnson@usgs.gov","middleInitial":"A.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true},{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":645741,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Madsen, Jesper","contributorId":9950,"corporation":false,"usgs":true,"family":"Madsen","given":"Jesper","affiliations":[],"preferred":false,"id":645742,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70175623,"text":"70175623 - 2016 - Noncontact methods for measuring water-surface elevations and velocities in rivers: Implications for depth and discharge extraction","interactions":[],"lastModifiedDate":"2016-08-31T11:51:47","indexId":"70175623","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Noncontact methods for measuring water-surface elevations and velocities in rivers: Implications for depth and discharge extraction","docAbstract":"Recently developed optical and videographic methods for measuring water-surface properties in a noninvasive manner hold great promise for extracting river hydraulic and bathymetric information. This paper describes such a technique, concentrating on the method of infrared videog-\r\nraphy for measuring surface velocities and both acoustic (laboratory-based) and laser-scanning (field-based) techniques for measuring water-surface elevations. In ideal laboratory situations with simple flows, appropriate spatial and temporal averaging results in accurate water-surface elevations and water-surface velocities. In test cases, this accuracy is sufficient to allow direct inversion of the governing equations of motion to produce estimates of depth and discharge. Unlike other optical techniques for determining local depth that rely on transmissivity of the water column (bathymetric lidar, multi/hyperspectral correlation), this method uses only water-surface information, so even deep and/or turbid flows can be investigated.  However, significant errors arise in areas of nonhydrostatic spatial accelerations, such as those associated with flow over bedforms or other relatively steep obstacles. Using laboratory measurements for test cases, the cause of these errors is examined and both a simple semi-empirical method and computational results are presented that can potentially reduce bathymetric inversion errors.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"RiverFlow 2016","largerWorkSubtype":{"id":12,"text":"Conference publication"},"language":"English","publisher":"CRC Press","isbn":"9781138029132","usgsCitation":"Nelson, J.M., Kinzel, P.J., McDonald, R.R., and Schmeeckle, M., 2016, Noncontact methods for measuring water-surface elevations and velocities in rivers: Implications for depth and discharge extraction, <i>in</i> RiverFlow 2016, p. 637-645.","productDescription":"9 p.","startPage":"637","endPage":"645","ipdsId":"IP-073740","costCenters":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"links":[{"id":328121,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57c7ffbce4b0f2f0cebfc313","contributors":{"authors":[{"text":"Nelson, Jonathan M. 0000-0002-7632-8526 jmn@usgs.gov","orcid":"https://orcid.org/0000-0002-7632-8526","contributorId":2812,"corporation":false,"usgs":true,"family":"Nelson","given":"Jonathan","email":"jmn@usgs.gov","middleInitial":"M.","affiliations":[{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true},{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":645857,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kinzel, Paul J. 0000-0002-6076-9730 pjkinzel@usgs.gov","orcid":"https://orcid.org/0000-0002-6076-9730","contributorId":743,"corporation":false,"usgs":true,"family":"Kinzel","given":"Paul","email":"pjkinzel@usgs.gov","middleInitial":"J.","affiliations":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true},{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true},{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":645858,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"McDonald, Richard R. 0000-0002-0703-0638 rmcd@usgs.gov","orcid":"https://orcid.org/0000-0002-0703-0638","contributorId":2428,"corporation":false,"usgs":true,"family":"McDonald","given":"Richard","email":"rmcd@usgs.gov","middleInitial":"R.","affiliations":[{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true},{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":645859,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Schmeeckle, Mark mschmeeckle@usgs.gov","contributorId":173789,"corporation":false,"usgs":true,"family":"Schmeeckle","given":"Mark","email":"mschmeeckle@usgs.gov","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":645860,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70175622,"text":"70175622 - 2016 - Field scale test of multi-dimensional flow and morphodynamic simulations used for restoration design analysis","interactions":[],"lastModifiedDate":"2016-08-31T11:54:51","indexId":"70175622","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Field scale test of multi-dimensional flow and morphodynamic simulations used for restoration design analysis","docAbstract":"Two- and three-dimensional morphodynamic simulations are becoming common in studies of channel form and process. The performance of these simulations are often validated against measurements from laboratory studies. Collecting channel change information in natural settings for \r\nmodel validation is difficult because it can be expensive and under most channel forming flows the resulting channel change is generally small. Several channel restoration projects designed in part to armor large \r\nmeanders with several large spurs constructed of wooden piles on the Kootenai River, ID, have resulted in rapid bed elevation change following construction. Monitoring of these restoration projects includes post- restoration (as-built) Digital Elevation Models (DEMs) as well as additional channel surveys following high channel forming flows post-construction. The resulting sequence of measured bathymetry provides excellent validation data for morphodynamic simulations at the reach scale of a real river. In this paper we test the performance a quasi-three-dimensional morphodynamic simulation against the measured elevation change. The resulting simulations predict the pattern of channel change reasonably well but many of the details such as the maximum scour are under predicted.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"RiverFlow 2016","largerWorkSubtype":{"id":12,"text":"Conference publication"},"language":"English","publisher":"CRC Press","isbn":"9781138029132","usgsCitation":"McDonald, R.R., Nelson, J.M., Fosness, R.L., and Nelson, P.O., 2016, Field scale test of multi-dimensional flow and morphodynamic simulations used for restoration design analysis, <i>in</i> RiverFlow 2016, p. 1390-1398.","productDescription":"9 p.","startPage":"1390","endPage":"1398","ipdsId":"IP-073664","costCenters":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"links":[{"id":328124,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":328123,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://www.crcpress.com/River-Flow-2016-Iowa-City-USA-July-11-14-2016/Constantinescu-Garcia-Hanes/p/book/9781138029132"}],"publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57c7ffb3e4b0f2f0cebfc262","contributors":{"editors":[{"text":"Constantinescu, George","contributorId":174167,"corporation":false,"usgs":false,"family":"Constantinescu","given":"George","email":"","affiliations":[{"id":7241,"text":"IIHR-Hydroscience and Engineering, Department of Civil and Environmental Engineering, The University of Iowa","active":true,"usgs":false}],"preferred":false,"id":647622,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Garcia, Marcelo H.","contributorId":74236,"corporation":false,"usgs":false,"family":"Garcia","given":"Marcelo H.","affiliations":[{"id":33106,"text":"University of Illinois at Urbana Champaign","active":true,"usgs":false}],"preferred":false,"id":647623,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Hanes, Dan","contributorId":174168,"corporation":false,"usgs":false,"family":"Hanes","given":"Dan","email":"","affiliations":[{"id":12995,"text":"Department of Earth and Atmospheric Sciences, Saint Louis University","active":true,"usgs":false}],"preferred":false,"id":647624,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"McDonald, Richard R. 0000-0002-0703-0638 rmcd@usgs.gov","orcid":"https://orcid.org/0000-0002-0703-0638","contributorId":2428,"corporation":false,"usgs":true,"family":"McDonald","given":"Richard","email":"rmcd@usgs.gov","middleInitial":"R.","affiliations":[{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true},{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":645853,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Nelson, Jonathan M. 0000-0002-7632-8526 jmn@usgs.gov","orcid":"https://orcid.org/0000-0002-7632-8526","contributorId":2812,"corporation":false,"usgs":true,"family":"Nelson","given":"Jonathan","email":"jmn@usgs.gov","middleInitial":"M.","affiliations":[{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true},{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":645854,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fosness, Ryan L. 0000-0003-4089-2704 rfosness@usgs.gov","orcid":"https://orcid.org/0000-0003-4089-2704","contributorId":2703,"corporation":false,"usgs":true,"family":"Fosness","given":"Ryan","email":"rfosness@usgs.gov","middleInitial":"L.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":true,"id":645855,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Nelson, Peter O.","contributorId":15981,"corporation":false,"usgs":true,"family":"Nelson","given":"Peter","email":"","middleInitial":"O.","affiliations":[],"preferred":false,"id":645856,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70175381,"text":"70175381 - 2016 - Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain","interactions":[],"lastModifiedDate":"2016-08-09T09:09:41","indexId":"70175381","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5166,"text":"Northwest Geology","active":true,"publicationSubtype":{"id":10}},"title":"Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain","docAbstract":"<p>No abstract available.</p>","largerWorkTitle":"Geology of the eastern Snake River Plain and surrounding highlands","language":"English","publisher":"Tobacco Root Geological Society","usgsCitation":"McCurry, M., Bartholomay, R.C., Hodges, M., and Podgorney, R., 2016, Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain: Northwest Geology, v. 45, p. 125-154.","productDescription":"30 p.","startPage":"125","endPage":"154","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-075045","costCenters":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"links":[{"id":326288,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"45","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57aaffb8e4b05e859be0fb1d","contributors":{"authors":[{"text":"McCurry, Michael","contributorId":173529,"corporation":false,"usgs":false,"family":"McCurry","given":"Michael","email":"","affiliations":[{"id":26917,"text":"Idaho State University, Pocatello, ID","active":true,"usgs":false}],"preferred":false,"id":644998,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bartholomay, Roy C. 0000-0002-4809-9287 rcbarth@usgs.gov","orcid":"https://orcid.org/0000-0002-4809-9287","contributorId":1131,"corporation":false,"usgs":true,"family":"Bartholomay","given":"Roy","email":"rcbarth@usgs.gov","middleInitial":"C.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":true,"id":644996,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hodges, Mary K. V. 0000-0001-8708-0354 mkhodges@usgs.gov","orcid":"https://orcid.org/0000-0001-8708-0354","contributorId":3023,"corporation":false,"usgs":true,"family":"Hodges","given":"Mary K. V.","email":"mkhodges@usgs.gov","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":false,"id":644997,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Podgorney, Robert","contributorId":173530,"corporation":false,"usgs":false,"family":"Podgorney","given":"Robert","email":"","affiliations":[{"id":27243,"text":"Idaho National Laboratory","active":true,"usgs":false}],"preferred":false,"id":644999,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70185030,"text":"70185030 - 2016 - Seasonal movements and habitat use of Potamodromous Rainbow Trout across a complex Alaska riverscape","interactions":[],"lastModifiedDate":"2017-03-14T12:35:17","indexId":"70185030","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3624,"text":"Transactions of the American Fisheries Society","active":true,"publicationSubtype":{"id":10}},"title":"Seasonal movements and habitat use of Potamodromous Rainbow Trout across a complex Alaska riverscape","docAbstract":"<p><span>Potamodromous Rainbow Trout </span><i>Oncorhynchus mykiss</i><span> are an important ecological and recreational resource in freshwater ecosystems of Alaska, and increased human development, hydroelectric projects, and reduced escapement of Chinook Salmon </span><i>Oncorhynchus tshawytscha</i><span> may threaten their populations. We used aerial and on-the-ground telemetry tracking, a digital landscape model, and resource selection functions to characterize seasonal movements and habitat use of 232 adult (&gt;400 mm FL) Rainbow Trout across the complex, large (31,221 km</span><sup>2</sup><span>) Susitna River basin of south-central Alaska during 2003–2004 and 2013–2014. We found that fish overwintered in main-stem habitats near tributary mouths from November to April. After ice-out in May, fish ascended tributaries up to 51 km to spawn and afterward moved downstream to lower tributary reaches, assumedly to intercept egg and flesh subsidies provided by spawning salmonids in July and August. Fish transitioned back to main-stem overwintering habitats at the onset of autumn when salmonid spawning waned. Fidelity to tributaries where fish were initially tagged varied across seasons but was high (&gt;0.75) in three out of four drainages. Model-averaged resource selection functions suggested that Rainbow Trout habitat use varied seasonally; fish selected low-gradient, sinuous, main-stem stream reaches in the winter, reaches with suitably sized substrate during spawning, larger reaches during the feeding season prior to the arrival of spawning salmonids, and reaches with high Chinook Salmon spawning habitat potential following the arrival of adult fish. We found little difference in movement patterns between males and females among a subset of fish for which sex was determined using genetic analysis. As most Rainbow Trout undertake extensive movements within and among tributaries and make use of a variety of seasonal habitats to complete their life histories, it will be critical to take a basinwide approach to their management (i.e., habitat protection and angling bag limits) in light of anticipated land-use changes.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/00028487.2016.1202320","usgsCitation":"Fraley, K.M., Falke, J.A., Yanusz, R., and Ivey, S.S., 2016, Seasonal movements and habitat use of Potamodromous Rainbow Trout across a complex Alaska riverscape: Transactions of the American Fisheries Society, v. 145, no. 5, p. 1077-1092, https://doi.org/10.1080/00028487.2016.1202320.","productDescription":"16 p.","startPage":"1077","endPage":"1092","ipdsId":"IP-071545","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":337502,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","volume":"145","issue":"5","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-12","publicationStatus":"PW","scienceBaseUri":"58c90126e4b0849ce97abce1","contributors":{"authors":[{"text":"Fraley, Kevin M.","contributorId":189243,"corporation":false,"usgs":false,"family":"Fraley","given":"Kevin","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":684211,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Falke, Jeffrey A. 0000-0002-6670-8250 jfalke@usgs.gov","orcid":"https://orcid.org/0000-0002-6670-8250","contributorId":5195,"corporation":false,"usgs":true,"family":"Falke","given":"Jeffrey","email":"jfalke@usgs.gov","middleInitial":"A.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":684009,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Yanusz, Richard","contributorId":189244,"corporation":false,"usgs":false,"family":"Yanusz","given":"Richard","email":"","affiliations":[],"preferred":false,"id":684212,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ivey, Sam S.","contributorId":105190,"corporation":false,"usgs":true,"family":"Ivey","given":"Sam","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":684213,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70182774,"text":"70182774 - 2016 - Responses of a tall building in Los Angeles, California as inferred from local and distant earthquakes","interactions":[],"lastModifiedDate":"2017-03-01T14:14:38","indexId":"70182774","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1436,"text":"Earthquake Spectra","active":true,"publicationSubtype":{"id":10}},"title":"Responses of a tall building in Los Angeles, California as inferred from local and distant earthquakes","docAbstract":"Increasing inventory of tall buildings in the United States and elsewhere may be subjected to motions generated by near and far seismic sources that cause long-period effects. Multiple sets of records that exhibited such effects were retrieved from tall buildings in Tokyo and Osaka ~ 350 km and 770 km from the epicenter of the 2011 Tohoku earthquake. In California, very few tall buildings have been instrumented. An instrumented 52-story building in downtown Los Angeles recorded seven local and distant earthquakes. Spectral and system identification methods exhibit significant low frequencies of interest (~0.17 Hz, 0.56 Hz and 1.05 Hz).  These frequencies compare well with those computed by transfer functions; however, small variations are observed between the significant low frequencies for each of the seven earthquakes. The torsional and translational frequencies are very close and are coupled. Beating effect is observed in at least two of the seven earthquake data.","language":"English","publisher":"Earthquake Engineering Research Institute","doi":"10.1193/050515EQS065M","usgsCitation":"Çelebi, M., Hasan Ulusoy, and Nakata, N., 2016, Responses of a tall building in Los Angeles, California as inferred from local and distant earthquakes: Earthquake Spectra, v. 32, no. 3, p. 1821-1843, https://doi.org/10.1193/050515EQS065M.","productDescription":"23 p.","startPage":"1821","endPage":"1843","ipdsId":"IP-063900","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":336771,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"32","issue":"3","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-01","publicationStatus":"PW","scienceBaseUri":"58b7eba7e4b01ccd5500bb17","contributors":{"authors":[{"text":"Çelebi, Mehmet 0000-0002-4769-7357 celebi@usgs.gov","orcid":"https://orcid.org/0000-0002-4769-7357","contributorId":3205,"corporation":false,"usgs":true,"family":"Çelebi","given":"Mehmet","email":"celebi@usgs.gov","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":false,"id":673708,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hasan Ulusoy","contributorId":184171,"corporation":false,"usgs":false,"family":"Hasan Ulusoy","affiliations":[],"preferred":false,"id":673709,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Nakata, Nori","contributorId":184172,"corporation":false,"usgs":false,"family":"Nakata","given":"Nori","email":"","affiliations":[],"preferred":false,"id":673710,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70185009,"text":"70185009 - 2016 - Microbial pathogens in source and treated waters from drinking water treatment plants in the United States and implications for human health","interactions":[],"lastModifiedDate":"2018-08-07T12:11:38","indexId":"70185009","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3352,"text":"Science of the Total Environment","active":true,"publicationSubtype":{"id":10}},"title":"Microbial pathogens in source and treated waters from drinking water treatment plants in the United States and implications for human health","docAbstract":"<p><span>An occurrence survey was conducted on selected pathogens in source and treated drinking water collected from 25 drinking water treatment plants (DWTPs) in the United States. Water samples were analyzed for the protozoa </span><i>Giardia</i><span> and </span><i>Cryptosporidium</i><span> (EPA Method 1623); the fungi </span><i>Aspergillus fumigatus</i><span>, </span><i>Aspergillus niger</i><span> and </span><i>Aspergillus terreus</i><span> (quantitative PCR [qPCR]); and the bacteria </span><i>Legionella pneumophila</i><span> (qPCR), </span><i>Mycobacterium avium</i><span>, </span><i>M. avium</i><span> subspecies </span><i>paratuberculosis</i><span>, and </span><i>Mycobacterium intracellulare</i><span> (qPCR and culture). </span><i>Cryptosporidium</i><span> and </span><i>Giardia</i><span> were detected in 25% and in 46% of the source water samples, respectively (treated waters were not tested). </span><i>Aspergillus fumigatus</i><span> was the most commonly detected fungus in source waters (48%) but none of the three fungi were detected in treated water. </span><i>Legionella pneumophila</i><span> was detected in 25% of the source water samples but in only 4% of treated water samples. </span><i>M. avium</i><span> and </span><i>M. intracellulare</i><span> were both detected in 25% of source water, while all three mycobacteria were detected in 36% of treated water samples. Five species of mycobacteria, </span><i>Mycobacterium mucogenicum</i><span>, </span><i>Mycobacterium phocaicum</i><span>, </span><i>Mycobacterium triplex</i><span>, </span><i>Mycobacterium fortuitum</i><span>, and </span><i>Mycobacterium lentiflavum</i><span> were cultured from treated water samples. Although these DWTPs represent a fraction of those in the U.S., the results suggest that many of these pathogens are widespread in source waters but that treatment is generally effective in reducing them to below detection limits. The one exception is the mycobacteria, which were commonly detected in treated water, even when not detected in source waters.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.scitotenv.2016.03.214","usgsCitation":"King, D.N., Donohue, M.J., Vesper, S.J., Villegas, E.N., Ware, M.W., Vogel, M.E., Furlong, E., Kolpin, D.W., Glassmeyer, S., and Pfaller, S., 2016, Microbial pathogens in source and treated waters from drinking water treatment plants in the United States and implications for human health: Science of the Total Environment, v. 562, p. 987-995, https://doi.org/10.1016/j.scitotenv.2016.03.214.","productDescription":"9 p.","startPage":"987","endPage":"995","ipdsId":"IP-061631","costCenters":[{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true},{"id":589,"text":"Toxic Substances Hydrology Program","active":true,"usgs":true}],"links":[{"id":470704,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.scitotenv.2016.03.214","text":"Publisher Index Page"},{"id":337446,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"562","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58c7afa1e4b0849ce9795ea8","chorus":{"doi":"10.1016/j.scitotenv.2016.03.214","url":"http://dx.doi.org/10.1016/j.scitotenv.2016.03.214","publisher":"Elsevier BV","authors":"King Dawn N., Donohue Maura J., Vesper Stephen J., Villegas Eric N., Ware Michael W., Vogel Megan E., Furlong Edward F., Kolpin Dana W., Glassmeyer Susan T., Pfaller Stacy","journalName":"Science of The Total Environment","publicationDate":"8/2016"},"contributors":{"authors":[{"text":"King, Dawn N.","contributorId":189145,"corporation":false,"usgs":false,"family":"King","given":"Dawn","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":683968,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Donohue, Maura J.","contributorId":189146,"corporation":false,"usgs":false,"family":"Donohue","given":"Maura","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":683969,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Vesper, Stephen J.","contributorId":78296,"corporation":false,"usgs":true,"family":"Vesper","given":"Stephen","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":683970,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Villegas, Eric N.","contributorId":56947,"corporation":false,"usgs":true,"family":"Villegas","given":"Eric","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":683971,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Ware, Michael W.","contributorId":65357,"corporation":false,"usgs":true,"family":"Ware","given":"Michael","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":683972,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Vogel, Megan E.","contributorId":189147,"corporation":false,"usgs":false,"family":"Vogel","given":"Megan","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":683973,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Furlong, Edward","contributorId":62689,"corporation":false,"usgs":true,"family":"Furlong","given":"Edward","affiliations":[],"preferred":false,"id":683974,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Kolpin, Dana W. 0000-0002-3529-6505 dwkolpin@usgs.gov","orcid":"https://orcid.org/0000-0002-3529-6505","contributorId":1239,"corporation":false,"usgs":true,"family":"Kolpin","given":"Dana","email":"dwkolpin@usgs.gov","middleInitial":"W.","affiliations":[{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true}],"preferred":true,"id":683947,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Glassmeyer, Susan T.","contributorId":72924,"corporation":false,"usgs":true,"family":"Glassmeyer","given":"Susan T.","affiliations":[],"preferred":false,"id":683975,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Pfaller, Stacy","contributorId":189148,"corporation":false,"usgs":false,"family":"Pfaller","given":"Stacy","email":"","affiliations":[],"preferred":false,"id":683976,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70185010,"text":"70185010 - 2016 - Geochemistry of the Black Sea during the last 15 kyr: A protracted evolution of its hydrography and ecology","interactions":[],"lastModifiedDate":"2017-03-14T14:56:03","indexId":"70185010","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3002,"text":"Paleoceanography","active":true,"publicationSubtype":{"id":10}},"title":"Geochemistry of the Black Sea during the last 15 kyr: A protracted evolution of its hydrography and ecology","docAbstract":"<p><span>The Black Sea is a 2200 m deep anoxic, marine sea connected to the Mediterranean Sea via the Dardanelles Strait, Marmara Sea, and the 3 km wide, 35 m deep Bosphorus Strait. The biogeochemistry of sediment from the Anatolia slope has recorded changes to the hydrography leading up to and following the input of Mediterranean water at ~9.4 ka (10</span><sup>3</sup><span> years B.P.), when global sea level rose to the level of the Bosphorus sill and high-salinity water from the Mediterranean began to spill into the then brackish lake. The water initially mixed little with the lake water but cascaded to the bottom where it remained essentially isolated for ~1.6 kyr, the time required to fill the basin from the bottom up at its present input rate. The accumulation of Mo in the seafloor sediments, a proxy of bottom-water anoxia, increased sharply at ~8.6 ka, when bacterial respiration in the bottom water advanced to SO</span><sub>4</sub><sup>2−</sup><span> reduction by the oxidation of organic detritus that settled out of the photic zone. Its accumulation remained elevated to ~5.6 ka, when it decreased 60%, only to again increase slightly at ~2.0 ka. The accumulation of C</span><sub>org</sub><span>, a proxy of primary productivity, increased threefold to fourfold at ~7.8 ka, when upward mixing of the high-salinity bottom water replaced the then thin veneer of the brackish photic zone in less than 50 years. From that time onward, the accumulation of C</span><sub>org</sub><span>, Mo, and additional trace metals has reflected the hydrography of the basin and Bosphorus Strait, controlled largely by climate.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1002/2016PA002949","usgsCitation":"Piper, D.Z., 2016, Geochemistry of the Black Sea during the last 15 kyr: A protracted evolution of its hydrography and ecology: Paleoceanography, v. 31, no. 8, p. 1117-1137, https://doi.org/10.1002/2016PA002949.","productDescription":"21 p.","startPage":"1117","endPage":"1137","ipdsId":"IP-062979","costCenters":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"links":[{"id":470716,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/2016pa002949","text":"Publisher Index Page"},{"id":337527,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Black Sea","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              27.1142578125,\n              40.51379915504413\n            ],\n            [\n              41.87988281249999,\n              40.51379915504413\n            ],\n            [\n              41.87988281249999,\n              47.12995075666307\n            ],\n            [\n              27.1142578125,\n              47.12995075666307\n            ],\n            [\n              27.1142578125,\n              40.51379915504413\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"31","issue":"8","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-28","publicationStatus":"PW","scienceBaseUri":"58c90127e4b0849ce97abce7","contributors":{"authors":[{"text":"Piper, David Z. dzpiper@usgs.gov","contributorId":2452,"corporation":false,"usgs":true,"family":"Piper","given":"David","email":"dzpiper@usgs.gov","middleInitial":"Z.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":683948,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70192663,"text":"70192663 - 2016 - Overwintering strategies of migratory birds: a novel approach for estimating seasonal movement patterns of residents and transients","interactions":[],"lastModifiedDate":"2017-11-08T15:37:01","indexId":"70192663","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2163,"text":"Journal of Applied Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Overwintering strategies of migratory birds: a novel approach for estimating seasonal movement patterns of residents and transients","docAbstract":"<ol id=\"jpe12655-list-0001\" class=\"o-list--numbered o-list--paragraph\"><li>Our understanding of movement patterns in wildlife populations has played an important role in current ecological knowledge and can inform landscape conservation decisions. Direct measures of movement can be obtained using marked individuals, but this requires tracking individuals across a landscape or multiple sites.</li><li>We demonstrate how movements can be estimated indirectly using single-site, capture–mark–recapture (CMR) data with a multi-state open robust design with state uncertainty model (MSORD-SU). We treat residence and transience as two phenotypic states of overwintering migrants and use time- and state-dependent probabilities of site entry and persistence as indirect measures of movement. We applied the MSORD-SU to data on eight species of overwintering Neotropical birds collected in 14 countries between 2002 and 2011. In addition to entry and persistence probabilities, we estimated the proportions of residents at a study site and mean residence times.</li><li>We identified overwintering movement patterns and residence times that contrasted with prior categorizations of territoriality. Most species showed an evidence of residents entering sites at multiple time intervals, with transients tending to enter between peak resident movement times. Persistence and the proportion of residents varied by latitude, but were not always positively correlated for a given species.</li><li><i>Synthesis and applications</i>. Our results suggest that migratory songbirds commonly move among habitats during the overwintering period. Substantial proportions of populations appear to be comprised of transient individuals, and residents tend to persist at specific sites for relatively short periods of time. This information on persistence and movement patterns should be explored for specific habitats to guide landscape management on the wintering grounds, such as determining which habitats are conserved or restored as part of certification programmes of tropical agroforestry crops. We suggest that research and conservation efforts on Neotropical migrant songbirds focus on identifying landscape configurations and regional habitat networks that support these diverse overwintering strategies to secure full life cycle conservation.</li></ol>","language":"English","publisher":"British Ecological Society","doi":"10.1111/1365-2664.12655","usgsCitation":"Ruiz-Gutierrez, V., Kendall, W., Saracco, J., and White, G.C., 2016, Overwintering strategies of migratory birds: a novel approach for estimating seasonal movement patterns of residents and transients: Journal of Applied Ecology, v. 53, no. 4, p. 1035-1045, https://doi.org/10.1111/1365-2664.12655.","productDescription":"11 p.","startPage":"1035","endPage":"1045","ipdsId":"IP-051729","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":470701,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/1365-2664.12655","text":"Publisher Index Page"},{"id":348496,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -116,\n             1\n            ],\n            [\n              -60,\n              1\n            ],\n            [\n              -60,\n              37\n            ],\n            [\n              -116,\n              37\n            ],\n            [\n              -116,\n              1\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"53","issue":"4","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-04-16","publicationStatus":"PW","scienceBaseUri":"5a0425bfe4b0dc0b45b453f3","contributors":{"authors":[{"text":"Ruiz-Gutierrez, Viviana","contributorId":89654,"corporation":false,"usgs":true,"family":"Ruiz-Gutierrez","given":"Viviana","email":"","affiliations":[],"preferred":false,"id":721369,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kendall, William L. 0000-0003-0084-9891 wkendall@usgs.gov","orcid":"https://orcid.org/0000-0003-0084-9891","contributorId":166709,"corporation":false,"usgs":true,"family":"Kendall","given":"William L.","email":"wkendall@usgs.gov","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":false,"id":716672,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Saracco, James F.","contributorId":23680,"corporation":false,"usgs":true,"family":"Saracco","given":"James F.","affiliations":[],"preferred":false,"id":721370,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"White, Gary C.","contributorId":66831,"corporation":false,"usgs":false,"family":"White","given":"Gary","email":"","middleInitial":"C.","affiliations":[{"id":6621,"text":"Colorado State University","active":true,"usgs":false}],"preferred":false,"id":721371,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70176357,"text":"70176357 - 2016 - sbtools: A package connecting R to cloud-based data for collaborative online research","interactions":[],"lastModifiedDate":"2020-12-21T16:12:53.569339","indexId":"70176357","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5208,"text":"The R Journal ","active":true,"publicationSubtype":{"id":10}},"title":"sbtools: A package connecting R to cloud-based data for collaborative online research","docAbstract":"The adoption of high-quality tools for collaboration and reproducible research such as R and Github is becoming more common in many research fields. While Github and other version management systems are excellent resources, they were originally designed to handle code and scale poorly to large text-based or binary datasets. A number of scientific data repositories are coming online and are often focused on dataset archival and publication. To handle collaborative workflows using large scientific datasets, there is increasing need to connect cloud-based online data storage to R. In this article, we describe how the new R package sbtools enables direct access to the advanced online data functionality provided by ScienceBase, the U.S. Geological Survey’s online scientific data storage platform.","language":"English","publisher":"The R Foundation","doi":"10.32614/RJ-2016-029","usgsCitation":"Winslow, L., Chamberlain, S., Appling, A., and Read, J.S., 2016, sbtools: A package connecting R to cloud-based data for collaborative online research: The R Journal , v. 8, no. 1, p. 387-398, https://doi.org/10.32614/RJ-2016-029.","productDescription":"11 p.","startPage":"387","endPage":"398","ipdsId":"IP-075498","costCenters":[{"id":5054,"text":"Office of Water Information","active":true,"usgs":true}],"links":[{"id":470698,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.32614/rj-2016-029","text":"Publisher Index Page"},{"id":438578,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P912NGFV","text":"USGS data release","linkHelpText":"sbtools: USGS ScienceBase Tools"},{"id":328439,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"8","issue":"1","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57d3dd42e4b0571647d19aee","contributors":{"authors":[{"text":"Winslow, Luke 0000-0002-8602-5510 lwinslow@usgs.gov","orcid":"https://orcid.org/0000-0002-8602-5510","contributorId":168947,"corporation":false,"usgs":true,"family":"Winslow","given":"Luke","email":"lwinslow@usgs.gov","affiliations":[{"id":160,"text":"Center for Integrated Data Analytics","active":false,"usgs":true},{"id":5054,"text":"Office of Water Information","active":true,"usgs":true},{"id":677,"text":"Wisconsin Water Science Center","active":true,"usgs":true}],"preferred":true,"id":648500,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chamberlain, Scott","contributorId":174527,"corporation":false,"usgs":false,"family":"Chamberlain","given":"Scott","email":"","affiliations":[],"preferred":false,"id":648503,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Appling, Alison P. aappling@usgs.gov","contributorId":150192,"corporation":false,"usgs":true,"family":"Appling","given":"Alison P.","email":"aappling@usgs.gov","affiliations":[],"preferred":false,"id":648504,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Read, Jordan S. 0000-0002-3888-6631 jread@usgs.gov","orcid":"https://orcid.org/0000-0002-3888-6631","contributorId":4453,"corporation":false,"usgs":true,"family":"Read","given":"Jordan","email":"jread@usgs.gov","middleInitial":"S.","affiliations":[{"id":160,"text":"Center for Integrated Data Analytics","active":false,"usgs":true},{"id":677,"text":"Wisconsin Water Science Center","active":true,"usgs":true},{"id":5054,"text":"Office of Water Information","active":true,"usgs":true}],"preferred":true,"id":648505,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70185022,"text":"70185022 - 2016 - Fortnightly modulation of San Andreas tremor and low-frequency earthquakes","interactions":[],"lastModifiedDate":"2017-03-14T13:50:59","indexId":"70185022","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3164,"text":"Proceedings of the National Academy of Sciences","active":true,"publicationSubtype":{"id":10}},"title":"Fortnightly modulation of San Andreas tremor and low-frequency earthquakes","docAbstract":"<p><span>Earth tides modulate tremor and low-frequency earthquakes (LFEs) on faults in the vicinity of the brittle−ductile (seismic−aseismic) transition. The response to the tidal stress carries otherwise inaccessible information about fault strength and rheology. Here, we analyze the LFE response to the fortnightly tide, which modulates the amplitude of the daily tidal stress over a 14-d cycle. LFE rate is highest during the waxing fortnightly tide, with LFEs most strongly promoted when the daily stress exceeds the previous peak stress by the widest margin. This pattern implies a threshold failure process, with slip initiated when stress exceeds the local fault strength. Variations in sensitivity to the fortnightly modulation may reflect the degree of stress concentration on LFE-producing brittle asperities embedded within an otherwise aseismic fault.</span></p>","language":"English","publisher":"National Academy of Sciences","doi":"10.1073/pnas.1524316113","usgsCitation":"van der Elst, N., Delorey, A., Shelly, D.R., and Johnson, P., 2016, Fortnightly modulation of San Andreas tremor and low-frequency earthquakes: Proceedings of the National Academy of Sciences, v. 113, no. 31, p. 8601-8605, https://doi.org/10.1073/pnas.1524316113.","productDescription":"5 p.","startPage":"8601","endPage":"8605","ipdsId":"IP-069380","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":470703,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1073/pnas.1524316113","text":"Publisher Index Page"},{"id":337515,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"San Andreas Fault","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -120,\n              36.5\n            ],\n            [\n              -121.25,\n              36.5\n            ],\n            [\n              -121.25,\n              35.5\n            ],\n            [\n              -120,\n              35.5\n            ],\n            [\n              -120,\n              36.5\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"113","issue":"31","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-07-18","publicationStatus":"PW","scienceBaseUri":"58c90127e4b0849ce97abce3","contributors":{"authors":[{"text":"van der Elst, Nicholas 0000-0002-3812-1153 nvanderelst@usgs.gov","orcid":"https://orcid.org/0000-0002-3812-1153","contributorId":147858,"corporation":false,"usgs":true,"family":"van der Elst","given":"Nicholas","email":"nvanderelst@usgs.gov","affiliations":[{"id":234,"text":"Earthquake Hazards Program","active":true,"usgs":true},{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":683983,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Delorey, Andrew","contributorId":189149,"corporation":false,"usgs":false,"family":"Delorey","given":"Andrew","email":"","affiliations":[],"preferred":false,"id":683984,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Shelly, David R. dshelly@usgs.gov","contributorId":2978,"corporation":false,"usgs":true,"family":"Shelly","given":"David","email":"dshelly@usgs.gov","middleInitial":"R.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":683986,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Johnson, Paul","contributorId":189150,"corporation":false,"usgs":false,"family":"Johnson","given":"Paul","email":"","affiliations":[],"preferred":false,"id":683985,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70187554,"text":"70187554 - 2016 - Land use in the Northern Great Plains region of the U.S. influences the survival and productivity of honey bee colonies","interactions":[],"lastModifiedDate":"2018-03-26T14:12:24","indexId":"70187554","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":682,"text":"Agriculture, Ecosystems and Environment","active":true,"publicationSubtype":{"id":10}},"title":"Land use in the Northern Great Plains region of the U.S. influences the survival and productivity of honey bee colonies","docAbstract":"<p><span>The Northern Great Plains region of the US annually hosts a large portion of commercially managed U.S. honey bee colonies each summer. Changing land use patterns over the last several decades have contributed to declines in the availability of bee forage across the region, and the future sustainability of the region to support honey bee colonies is unclear. We examined the influence of varying land use on the survivorship and productivity of honey bee colonies located in six apiaries within the Northern Great Plains state of North Dakota, an area of intensive agriculture and high density of beekeeping operations. Land use surrounding the apiaries was quantified over three years, 2010–2012, and survival and productivity of honey bee colonies were determined in response to the amount of bee forage land within a 3.2-km radius of each apiary. The area of uncultivated forage land (including pasture, USDA conservation program fields, fallow land, flowering woody plants, grassland, hay land, and roadside ditches) exerted a positive impact on annual apiary survival and honey production. Taxonomic diversity of bee-collected pollen and pesticide residues contained therein varied seasonally among apiaries, but overall were not correlated to large-scale land use patterns or survival and honey production. The predominant flowering plants utilized by honey bee colonies for pollen were volunteer species present in unmanaged (for honey bees), and often ephemeral, lands; thus placing honey bee colonies in a precarious situation for acquiring forage and nutrients over the entire growing season. We discuss the implications for land management, conservation, and beekeeper site selection in the Northern Great Plains to adequately support honey bee colonies and insure long term security for pollinator-dependent crops across the entire country.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.agee.2016.05.030","usgsCitation":"Smart, M., Pettis, J.S., Euliss, N., and Spivak, M.S., 2016, Land use in the Northern Great Plains region of the U.S. influences the survival and productivity of honey bee colonies: Agriculture, Ecosystems and Environment, v. 230, p. 139-149, https://doi.org/10.1016/j.agee.2016.05.030.","productDescription":"11 p.","startPage":"139","endPage":"149","ipdsId":"IP-077104","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":470697,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.agee.2016.05.030","text":"Publisher Index Page"},{"id":340959,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"230","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"591183b3e4b0e541a03c1a5a","contributors":{"authors":[{"text":"Smart, Matthew 0000-0003-0711-3035 msmart@usgs.gov","orcid":"https://orcid.org/0000-0003-0711-3035","contributorId":174424,"corporation":false,"usgs":true,"family":"Smart","given":"Matthew","email":"msmart@usgs.gov","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":694545,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Pettis, Jeff S.","contributorId":191870,"corporation":false,"usgs":false,"family":"Pettis","given":"Jeff","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":694546,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Euliss, Ned H. Jr.","contributorId":178233,"corporation":false,"usgs":false,"family":"Euliss","given":"Ned H. Jr.","affiliations":[],"preferred":false,"id":694547,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Spivak, Marla S.","contributorId":191871,"corporation":false,"usgs":false,"family":"Spivak","given":"Marla","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":694548,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70185053,"text":"70185053 - 2016 - Does resolution of flow field observation influence apparent habitat use and energy expenditure in juvenile coho salmon?","interactions":[],"lastModifiedDate":"2017-11-22T17:20:36","indexId":"70185053","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3722,"text":"Water Resources Research","onlineIssn":"1944-7973","printIssn":"0043-1397","active":true,"publicationSubtype":{"id":10}},"title":"Does resolution of flow field observation influence apparent habitat use and energy expenditure in juvenile coho salmon?","docAbstract":"<p><span>This study investigated how the resolution of observation influences interpretation of how fish, juvenile Coho Salmon (</span><i>Oncorhynchus kisutch</i><span>), exploit the hydraulic environment in streams. Our objectives were to evaluate how spatial resolution of the flow field observation influenced: (1) the velocities considered to be representative of habitat units; (2) patterns of use of the hydraulic environment by fish; and (3) estimates of energy expenditure. We addressed these objectives using observations within a 1:1 scale physical model of a full-channel log jam in an outdoor experimental stream. Velocities were measured with Acoustic Doppler Velocimetry at a 10 cm grid spacing, whereas fish locations and tailbeat frequencies were documented over time using underwater videogrammetry. Results highlighted that resolution of observation did impact perceived habitat use and energy expenditure, as did the location of measurement within habitat units and the use of averaging to summarize velocities within a habitat unit. In this experiment, the range of velocities and energy expenditure estimates increased with coarsening resolution (grid spacing from 10 to 100 cm), reducing the likelihood of measuring the velocities locally experienced by fish. In addition, the coarser resolutions contributed to fish appearing to select velocities that were higher than what was measured at finer resolutions. These findings indicate the need for careful attention to and communication of resolution of observation in investigating the hydraulic environment and in determining the habitat needs and bioenergetics of aquatic biota.</span></p>","language":"English","publisher":"AGU Publications","doi":"10.1002/2015WR018501","usgsCitation":"Tullos, D.D., Walter, C., and Dunham, J.B., 2016, Does resolution of flow field observation influence apparent habitat use and energy expenditure in juvenile coho salmon?: Water Resources Research, v. 52, no. 8, p. 5938-5950, https://doi.org/10.1002/2015WR018501.","productDescription":"13 p.","startPage":"5938","endPage":"5950","ipdsId":"IP-075959","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"links":[{"id":337462,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"52","issue":"8","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-08","publicationStatus":"PW","scienceBaseUri":"58c7afa1e4b0849ce9795ea4","contributors":{"authors":[{"text":"Tullos, Desiree D.","contributorId":176667,"corporation":false,"usgs":false,"family":"Tullos","given":"Desiree","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":684082,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Walter, Cara","contributorId":189188,"corporation":false,"usgs":false,"family":"Walter","given":"Cara","email":"","affiliations":[],"preferred":false,"id":684083,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dunham, Jason B. 0000-0002-6268-0633 jdunham@usgs.gov","orcid":"https://orcid.org/0000-0002-6268-0633","contributorId":147808,"corporation":false,"usgs":true,"family":"Dunham","given":"Jason","email":"jdunham@usgs.gov","middleInitial":"B.","affiliations":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true},{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true},{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":684081,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70195837,"text":"70195837 - 2016 - Insights into plant water uptake from xylem-water isotope measurements in two tropical catchments with contrasting moisture conditions","interactions":[],"lastModifiedDate":"2018-03-06T11:36:31","indexId":"70195837","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1924,"text":"Hydrological Processes","active":true,"publicationSubtype":{"id":10}},"title":"Insights into plant water uptake from xylem-water isotope measurements in two tropical catchments with contrasting moisture conditions","docAbstract":"<p><span>Water transpired by trees has long been assumed to be sourced from the same subsurface water stocks that contribute to groundwater recharge and streamflow. However, recent investigations using dual water stable isotopes have shown an apparent ecohydrological separation between tree-transpired water and stream water. Here we present evidence for such ecohydrological separation in two tropical environments in Puerto Rico where precipitation seasonality is relatively low and where precipitation is positively correlated with primary productivity. We determined the stable isotope signature of xylem water of 30 mahogany (</span><i>Swietenia</i><span><span>&nbsp;</span>spp.) trees sampled during two periods with contrasting moisture status. Our results suggest that the separation between transpiration water and groundwater recharge/streamflow water might be related less to the temporal phasing of hydrologic inputs and primary productivity, and more to the fundamental processes that drive evaporative isotopic enrichment of residual soil water within the soil matrix. The lack of an evaporative signature of both groundwater and streams in the study area suggests that these water balance components have a water source that is transported quickly to deeper subsurface storage compared to waters that trees use. A Bayesian mixing model used to partition source water proportions of xylem water showed that groundwater contribution was greater for valley-bottom, riparian trees than for ridge-top trees. Groundwater contribution was also greater at the xeric site than at the mesic–hydric site. These model results (1) underline the utility of a simple linear mixing model, implemented in a Bayesian inference framework, in quantifying source water contributions at sites with contrasting physiographic characteristics, and (2) highlight the informed judgement that should be made in interpreting mixing model results, of import particularly in surveying groundwater use patterns by vegetation from regional to global scales.<span>&nbsp;</span></span></p>","language":"English","publisher":"Wiley","doi":"10.1002/hyp.10841","usgsCitation":"Evaristo, J., McDonnell, J.J., Scholl, M.A., Bruijnzeel, L., and Chun, K.P., 2016, Insights into plant water uptake from xylem-water isotope measurements in two tropical catchments with contrasting moisture conditions: Hydrological Processes, v. 30, no. 18, p. 3210-3227, https://doi.org/10.1002/hyp.10841.","productDescription":"18 p.","startPage":"3210","endPage":"3227","ipdsId":"IP-069760","costCenters":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true}],"links":[{"id":352261,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"30","issue":"18","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2016-04-27","publicationStatus":"PW","scienceBaseUri":"5afee9ade4b0da30c1bfc57c","contributors":{"authors":[{"text":"Evaristo, Jaivime","contributorId":202933,"corporation":false,"usgs":false,"family":"Evaristo","given":"Jaivime","email":"","affiliations":[{"id":13248,"text":"University of Saskatchewan","active":true,"usgs":false}],"preferred":false,"id":730230,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McDonnell, Jeffrey J.","contributorId":202934,"corporation":false,"usgs":false,"family":"McDonnell","given":"Jeffrey","email":"","middleInitial":"J.","affiliations":[{"id":36551,"text":"University of Saskatchewan, Canada, and University of Aberdeen, Scotland","active":true,"usgs":false}],"preferred":false,"id":730231,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Scholl, Martha A. 0000-0001-6994-4614 mascholl@usgs.gov","orcid":"https://orcid.org/0000-0001-6994-4614","contributorId":1920,"corporation":false,"usgs":true,"family":"Scholl","given":"Martha","email":"mascholl@usgs.gov","middleInitial":"A.","affiliations":[{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":730229,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bruijnzeel, L. Adrian","contributorId":202935,"corporation":false,"usgs":false,"family":"Bruijnzeel","given":"L. Adrian","affiliations":[{"id":36552,"text":"King's College London","active":true,"usgs":false}],"preferred":false,"id":730232,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Chun, Kwok P.","contributorId":202936,"corporation":false,"usgs":false,"family":"Chun","given":"Kwok","email":"","middleInitial":"P.","affiliations":[{"id":36553,"text":"Hong Kong Baptist University","active":true,"usgs":false}],"preferred":false,"id":730233,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70178871,"text":"70178871 - 2016 - Development and assessment of indices to determine stream fish vulnerability to climate change and habitat alteration","interactions":[],"lastModifiedDate":"2016-12-09T15:35:26","indexId":"70178871","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1456,"text":"Ecological Indicators","active":true,"publicationSubtype":{"id":10}},"title":"Development and assessment of indices to determine stream fish vulnerability to climate change and habitat alteration","docAbstract":"<p><span>Understanding the future impacts of climate and land use change are critical for long-term biodiversity conservation. We developed and compared two indices to assess the vulnerability of stream fish in Missouri, USA based on species environmental tolerances, rarity, range size, dispersal ability and on the average connectivity of the streams occupied by each species. These two indices differed in how environmental tolerance was classified (i.e., vulnerability to habitat alteration, changes in stream temperature, and changes to flow regimes). Environmental tolerance was classified based on measured species responses to habitat alteration, and extremes in stream temperatures and flow conditions for one index, while environmental tolerance for the second index was based on species’ traits. The indices were compared to determine if vulnerability scores differed by index or state listing status. We also evaluated the spatial distribution of species classified as vulnerable to habitat alteration, changes in stream temperature, and change in flow regimes. Vulnerability scores were calculated for all 133 species with the trait association index, while only 101 species were evaluated using the species response index, because 32 species lacked data to analyze for a response. Scores from the trait association index were greater than the species response index. This is likely due to the species response index's inability to evaluate many rare species, which generally had high vulnerability scores for the trait association index. The indices were consistent in classifying vulnerability to habitat alteration, but varied in their classification of vulnerability due to increases in stream temperature and alterations to flow regimes, likely because extremes in current climate may not fully capture future conditions and their influence on stream fish communities. Both indices showed higher mean vulnerability scores for listed species than unlisted species, which provided a coarse measure of validation. Our indices classified species identified as being in need of conservation by the state of Missouri as highly vulnerable. The distribution of vulnerable species in Missouri showed consistent patterns between indices, with the more forest-dominated, groundwater fed streams in the Ozark subregion generally having higher numbers and proportions of vulnerable species per site than subregions that were agriculturally dominated with more overland flow. These results suggest that both indices will identify similar habitats as conservation action targets despite discrepancies in the classification of vulnerable species. Our vulnerability assessment provides a framework that can be refined and used in other regions.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.ecolind.2016.03.013","usgsCitation":"Sievert, N., Paukert, C.P., Tsang, Y., and Infante, D.M., 2016, Development and assessment of indices to determine stream fish vulnerability to climate change and habitat alteration: Ecological Indicators, v. 67, p. 403-416, https://doi.org/10.1016/j.ecolind.2016.03.013.","productDescription":"14 p.","startPage":"403","endPage":"416","ipdsId":"IP-069170","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":470709,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.ecolind.2016.03.013","text":"Publisher Index Page"},{"id":331824,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"67","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"584bd0dee4b077fc20250e0e","chorus":{"doi":"10.1016/j.ecolind.2016.03.013","url":"http://dx.doi.org/10.1016/j.ecolind.2016.03.013","publisher":"Elsevier BV","authors":"Sievert Nicholas A., Paukert Craig P., Tsang Yin-Phan, Infante Dana","journalName":"Ecological Indicators","publicationDate":"8/2016"},"contributors":{"authors":[{"text":"Sievert, Nicholas A. 0000-0003-3160-7596","orcid":"https://orcid.org/0000-0003-3160-7596","contributorId":177341,"corporation":false,"usgs":false,"family":"Sievert","given":"Nicholas A.","affiliations":[],"preferred":false,"id":655396,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Paukert, Craig P. 0000-0002-9369-8545 cpaukert@usgs.gov","orcid":"https://orcid.org/0000-0002-9369-8545","contributorId":879,"corporation":false,"usgs":true,"family":"Paukert","given":"Craig","email":"cpaukert@usgs.gov","middleInitial":"P.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":655388,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Tsang, Yin-Phan","contributorId":177342,"corporation":false,"usgs":false,"family":"Tsang","given":"Yin-Phan","email":"","affiliations":[],"preferred":false,"id":655397,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Infante, Dana M. 0000-0003-1385-1587","orcid":"https://orcid.org/0000-0003-1385-1587","contributorId":150821,"corporation":false,"usgs":false,"family":"Infante","given":"Dana","email":"","middleInitial":"M.","affiliations":[{"id":18112,"text":"Dept. of Fisheries and Wildlife,","active":true,"usgs":false}],"preferred":false,"id":655398,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70185052,"text":"70185052 - 2016 - Spawning and hatching of endangered Gila Chub in captivity","interactions":[],"lastModifiedDate":"2017-03-13T15:34:28","indexId":"70185052","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2885,"text":"North American Journal of Aquaculture","active":true,"publicationSubtype":{"id":10}},"title":"Spawning and hatching of endangered Gila Chub in captivity","docAbstract":"<p><span>Information on reproductive characteristics of the endangered Gila Chub </span><i>Gila intermedia</i><span> is largely limited and qualitative, and culture techniques and requirements are virtually unknown. Here we provide the first published data on spawning and selected reproductive and developmental characteristics of Gila Chub. Fish were brought to the laboratory in March 2003 from Sabino Creek, Arizona (12.3°C). Fish were then warmed slowly and spawned at 14.9°C, 10 d after collection. Following this initial spawning, Gila Chub spawned consistently in the laboratory without hormonal, chemical, photoperiod, temperature, or substrate manipulation during all times of the year. Spawns were noted at temperatures ranging from about 15°C to 26°C; however, we noted that Gila Chub spawned less frequently at temperatures above 24°C. Multiple spawning attempts per year per individual are probable. There was a strong, inverse relationship between time to hatch and incubation temperature. The hatch rate of eggs was high (mean = 99.43%), and larval Gila Chub accepted a variety of natural and formulated diets at first feeding. The future of Gila Chub may someday depend in part on hatchery propagation to provide specimens for restocking formerly occupied habitats and establishing refuge populations. Information from our study can aid future efforts to successfully spawn and rear Gila Chub and related species.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/15222055.2016.1167798","usgsCitation":"Schultz, A., and Bonar, S.A., 2016, Spawning and hatching of endangered Gila Chub in captivity: North American Journal of Aquaculture, v. 78, no. 4, p. 279-283, https://doi.org/10.1080/15222055.2016.1167798.","productDescription":"5 p.","startPage":"279","endPage":"283","ipdsId":"IP-075850","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":337464,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"78","issue":"4","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-09","publicationStatus":"PW","scienceBaseUri":"58c7afa1e4b0849ce9795ea6","contributors":{"authors":[{"text":"Schultz, Andrew A.","contributorId":189228,"corporation":false,"usgs":false,"family":"Schultz","given":"Andrew A.","affiliations":[],"preferred":false,"id":684152,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bonar, Scott A. 0000-0003-3532-4067 sbonar@usgs.gov","orcid":"https://orcid.org/0000-0003-3532-4067","contributorId":3712,"corporation":false,"usgs":true,"family":"Bonar","given":"Scott","email":"sbonar@usgs.gov","middleInitial":"A.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":684080,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70184322,"text":"70184322 - 2016 - Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane","interactions":[],"lastModifiedDate":"2017-03-07T16:00:00","indexId":"70184322","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1015,"text":"Biological Conservation","active":true,"publicationSubtype":{"id":10}},"title":"Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane","docAbstract":"<p><span>The importance of transient dynamics of structured populations is increasingly recognized in ecology, yet these implications are not largely considered in conservation practices. We investigate transient and long-term population dynamics to demonstrate the process and utility of incorporating transient dynamics into conservation research and to better understand the population management of slow life-history species; these species can be theoretically highly sensitive to short- and long-term transient effects. We are specifically interested in the effects of anthropogenic removal of individuals from populations, such as caused by harvest, poaching, translocation, or incidental take. We use the sandhill crane (</span><i>Grus canadensis</i><span>) as an exemplar species; it is long-lived, has low reproduction, late maturity, and multiple populations are subject to sport harvest. We found sandhill cranes to have extremely high potential, but low likelihood for transient dynamics, even when the population is being harvested. The typically low population growth rate of slow life-history species appears to buffer against many perturbations causing large transient effects. Transient dynamics will dominate population trajectories of these species when stage structures are highly biased towards the younger and non-reproducing individuals, a situation that may be rare in established populations of long-lived animals. However, short-term transient population growth can be highly sensitive to vital rates that are relatively insensitive under equilibrium, suggesting that stage structure should be known if perturbation analysis is used to identify effective conservation strategies. For populations of slow life-history species that are not prone to large perturbations to their most productive individuals, population growth may be approximated by equilibrium dynamics.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.biocon.2016.06.014","usgsCitation":"Gerber, B.D., and Kendall, W., 2016, Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane: Biological Conservation, v. 200, p. 228-239, https://doi.org/10.1016/j.biocon.2016.06.014.","productDescription":"12 p.","startPage":"228","endPage":"239","ipdsId":"IP-069777","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":336976,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"200","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4bb","contributors":{"authors":[{"text":"Gerber, Brian D.","contributorId":187620,"corporation":false,"usgs":false,"family":"Gerber","given":"Brian","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":681089,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kendall, William L. 0000-0003-0084-9891 wkendall@usgs.gov","orcid":"https://orcid.org/0000-0003-0084-9891","contributorId":166709,"corporation":false,"usgs":true,"family":"Kendall","given":"William L.","email":"wkendall@usgs.gov","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":false,"id":681007,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
]}