The first fish paramyxovirus was isolated from normal adult Chinook salmon returning to a coastal hatchery in Oregon in the fall of 1982. Subsequently, the virus was isolated from other stocks of adult Chinook salmon and one stock of adult coho salmon in California, Oregon, Washington and Alaska, leading to its designation as the Pacific salmon paramyxovirus (PSPV). The slow-growing virus can be isolated from tissues and ovarian fluids of healthy adult fish returning to spawn and apparently causes no clinical signs of disease or mortality. In 1995, a different and widely disseminated paramyxovirus was isolated from farmed Atlantic salmon in Norway and was designated as Atlantic salmon paramyxovirus (ASPV). Although this virus caused no disease or mortality when injected into juvenile Atlantic salmon, ASPV has been associated with proliferative gill inflammation in sea-reared yearling fish; however, additional infectious agents may be involved in the etiology of the condition. Sequence analysis of PSPV and ASPV isolates using the polymerase gene established their placement in the family Paramyxoviridaeand has shown the two viruses to be closely related but sufficiently different from each other and from other known paramyxoviruses to possibly represent new genera within the family. The viruses can be diagnosed by isolation in cell culture with final confirmation by molecular methods. Other paramyxovirus-like agents have been observed or isolated from rainbow trout in Germany, from seabream in Japan associated with epithelial necrosis, from turbot in Spain associated with erythrocytic inclusion bodies and buccal/opercular hemorrhaging and from koi and common carp associated with gill necrosis in the European Union.
","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Aquaculture virology","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Elsevier","doi":"10.1016/B978-0-12-801573-5.00017-6","usgsCitation":"Meyers, T.R., and Batts, W.N., 2016, Paramyxoviruses of fish, chap. 17 of Aquaculture virology, p. 259-265, https://doi.org/10.1016/B978-0-12-801573-5.00017-6.","productDescription":"7 p.","startPage":"259","endPage":"265","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-070453","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":325888,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57a064b9e4b060ce18fae706","contributors":{"editors":[{"text":"Kibenge, Frederick S. B.","contributorId":173300,"corporation":false,"usgs":false,"family":"Kibenge","given":"Frederick","email":"","middleInitial":"S. B.","affiliations":[],"preferred":false,"id":644170,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Godoy, Marcos","contributorId":173301,"corporation":false,"usgs":false,"family":"Godoy","given":"Marcos","email":"","affiliations":[],"preferred":false,"id":644171,"contributorType":{"id":2,"text":"Editors"},"rank":2}],"authors":[{"text":"Meyers, Theodore R.","contributorId":173262,"corporation":false,"usgs":false,"family":"Meyers","given":"Theodore","email":"","middleInitial":"R.","affiliations":[{"id":27204,"text":"Alaska Department of Fish and Game, Juneau, Alaska","active":true,"usgs":false}],"preferred":false,"id":643962,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Batts, William N. 0000-0002-6469-9004 bbatts@usgs.gov","orcid":"https://orcid.org/0000-0002-6469-9004","contributorId":3815,"corporation":false,"usgs":true,"family":"Batts","given":"William","email":"bbatts@usgs.gov","middleInitial":"N.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":643961,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70175114,"text":"70175114 - 2016 - Hepeviruses of fish","interactions":[],"lastModifiedDate":"2020-08-25T17:20:25.03906","indexId":"70175114","displayToPublicDate":"2016-08-01T16:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"24","title":"Hepeviruses of fish","docAbstract":"Originally reported from California, the cutthroat trout virus (CTV) has now been isolated from eight species of salmonids in North America. Early work focused on the replication and physical characteristics of the small, round virus, but not until 20 years later was it determined to be most closely related to viruses causing hepatitis E in humans or infecting avian and mammalian hosts. The genome of CTV consists of 7269 nucleotides of positive-sense, single-stranded RNA with a genome organization similar to other members of the family Hepeviridae, although the amino acid sequence identity appears low enough to support creation of a novel genus. While CTV has not been associated with acute disease in fish, the virus was able to form persistently infected cell cultures that may aid research in treatment of hepatitis E-like viruses affecting humans or other animals. Interestingly, trout exposed to CTV were protected for about a month against subsequent exposure to Infectious hematopoietic necrosis virus. Replicating agents suspected to be CTV can be confirmed by polymerase chain reaction (PCR) and sequencing.
","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Aquaculture virology","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Elsevier","doi":"10.1016/B978-0-12-801573-5.00024-3","usgsCitation":"Batts, W.N., 2016, Hepeviruses of fish, chap. 24 of Aquaculture virology, p. 365-369, https://doi.org/10.1016/B978-0-12-801573-5.00024-3.","productDescription":"5 p.","startPage":"365","endPage":"369","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-065265","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":325886,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57a064a6e4b060ce18fae6f5","contributors":{"editors":[{"text":"Kibenge, Frederick S. B.","contributorId":173300,"corporation":false,"usgs":false,"family":"Kibenge","given":"Frederick","email":"","middleInitial":"S. B.","affiliations":[],"preferred":false,"id":644168,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Godoy, Marcos","contributorId":173301,"corporation":false,"usgs":false,"family":"Godoy","given":"Marcos","email":"","affiliations":[],"preferred":false,"id":644169,"contributorType":{"id":2,"text":"Editors"},"rank":2}],"authors":[{"text":"Batts, William N. 0000-0002-6469-9004 bbatts@usgs.gov","orcid":"https://orcid.org/0000-0002-6469-9004","contributorId":3815,"corporation":false,"usgs":true,"family":"Batts","given":"William","email":"bbatts@usgs.gov","middleInitial":"N.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":643963,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}} ,{"id":70175135,"text":"70175135 - 2016 - Comment on \"No evidence of displacement due to wind turbines in breeding grassland songbirds\"","interactions":[],"lastModifiedDate":"2016-08-01T14:30:37","indexId":"70175135","displayToPublicDate":"2016-08-01T15:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3551,"text":"The Condor","active":true,"publicationSubtype":{"id":10}},"title":"Comment on \"No evidence of displacement due to wind turbines in breeding grassland songbirds\"","docAbstract":"A recent article published in The Condor: Ornithological Applications by Hale et al. (2014) is entitled, “No evidence of displacement due to wind turbines in breeding grassland songbirds.” The conclusion stated in that title, unfortunately, is based on inappropriate statistical analysis of data collected by the authors. In fact, their data provide evidence of potential displacement by wind turbines in 2 of the 3 species considered.
","language":"English","publisher":"Cooper Ornithological Society","doi":"10.1650/CONDOR-15-84.1","usgsCitation":"Johnson, D.H., 2016, Comment on \"No evidence of displacement due to wind turbines in breeding grassland songbirds\": The Condor, v. 118, no. 3, p. 674-675, https://doi.org/10.1650/CONDOR-15-84.1.","productDescription":"2 p.","startPage":"674","endPage":"675","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-065596","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":470690,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1650/condor-15-84.1","text":"Publisher Index Page"},{"id":325880,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"118","issue":"3","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57a064a5e4b060ce18fae6f0","contributors":{"authors":[{"text":"Johnson, Douglas H. 0000-0002-7778-6641 douglas_h_johnson@usgs.gov","orcid":"https://orcid.org/0000-0002-7778-6641","contributorId":1387,"corporation":false,"usgs":true,"family":"Johnson","given":"Douglas","email":"douglas_h_johnson@usgs.gov","middleInitial":"H.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":644052,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}} ,{"id":70175141,"text":"70175141 - 2016 - North American sturgeon otolith morphology","interactions":[],"lastModifiedDate":"2016-08-01T14:20:07","indexId":"70175141","displayToPublicDate":"2016-08-01T15:15:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1337,"text":"Copeia","active":true,"publicationSubtype":{"id":10}},"title":"North American sturgeon otolith morphology","docAbstract":"Accurate expedient species identification of deceased sturgeon (Acipenseridae) when external physical characteristic analysis is inconclusive has become a high priority due to the endangered or threatened status of sturgeon species around the world. Examination of otoliths has provided useful information to aid in population management, age and size-class analysis, understanding predator–prey interactions, and archeological research in other fish species. The relationship between otolith characteristics and sturgeon species has remained unknown. Therefore, we analyzed the shape of otoliths from the eight species of sturgeon found in North America to test the utility of otolith characteristic morphology in species identification. There were distinct differences in the size and shape of the otoliths between species of sturgeon with little shape variation among individuals of the same species. The relationship between otolith length axes was linear, and most of the variability was explained by a Log (axis + 1) transformation of the x and y axes (r2 = 0.8983) using the equation y = 0.73x + 0.0612. Images of otoliths from all eight North American species are presented to assist in the identification process.
","language":"English","publisher":"American Society of Ichthyologists and Herpetologists","doi":"10.1643/CI-14-076","usgsCitation":"Chalupnicki, M.A., and Dittman, D.E., 2016, North American sturgeon otolith morphology: Copeia, v. 104, no. 1, p. 260-266, https://doi.org/10.1643/CI-14-076.","productDescription":"7 p.","startPage":"260","endPage":"266","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-053727","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"links":[{"id":325876,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"104","issue":"1","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57a064b7e4b060ce18fae702","contributors":{"authors":[{"text":"Chalupnicki, Marc A. mchalupnicki@usgs.gov","contributorId":3236,"corporation":false,"usgs":true,"family":"Chalupnicki","given":"Marc","email":"mchalupnicki@usgs.gov","middleInitial":"A.","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":false,"id":644083,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Dittman, Dawn E. 0000-0002-0711-3732 ddittman@usgs.gov","orcid":"https://orcid.org/0000-0002-0711-3732","contributorId":2762,"corporation":false,"usgs":true,"family":"Dittman","given":"Dawn","email":"ddittman@usgs.gov","middleInitial":"E.","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":644084,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70175140,"text":"70175140 - 2016 - Diel diet of fantail darter in a tributary to Lake Ontario, New York, USA","interactions":[],"lastModifiedDate":"2016-11-03T16:27:49","indexId":"70175140","displayToPublicDate":"2016-08-01T15:15:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2299,"text":"Journal of Freshwater Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Diel diet of fantail darter in a tributary to Lake Ontario, New York, USA","docAbstract":"The stratigraphy of the layered deposits of the polar regions of Mars is theorized to contain a record of recent climate change linked to insolation changes driven by variations in the planet's orbital and rotational parameters. In order to confidently link stratigraphic signals to insolation periodicities, a description of the stratigraphy is required based on quantities that directly relate to intrinsic properties of the layers. We use stereo Digital Terrain Models (DTMs) from the High Resolution Imaging Science Experiment (HiRISE) to derive a characteristic of North Polar Layered Deposits (NPLD) strata that can be correlated over large distances: the topographic protrusion of layers exposed in troughs, which is a proxy for the layers’ resistance to erosion. Using a combination of image analysis and a signal-matching algorithm to correlate continuous depth-protrusion signals taken from DTMs at different locations, we construct a stratigraphic column that describes the upper ~500 m of at least 7% of the area of the NPLD, and find accumulation rates that vary by factors of up to two. We find that, when coupled with observations of exposed layers in orbital images, the topographic expression of the strata is consistently continuous through large distances in the top 300 – 500 m of the NPLD, suggesting it is better related to intrinsic layer properties than brightness alone.
","language":"English","publisher":"American Geophysical Union","publisherLocation":"Hoboken, NJ","doi":"10.1002/2015JE004992","usgsCitation":"Becerra, P., Byrne, S., Sori, M.M., Sutton, S., and Herkenhoff, K.E., 2016, Stratigraphy of the north polar layered deposits of Mars from high-resolution topography: Journal of Geophysical Research E: Planets, v. 121, no. 8, p. 1445-1471, https://doi.org/10.1002/2015JE004992.","productDescription":"27 p.","startPage":"1445","endPage":"1471","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-070689","costCenters":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"links":[{"id":470692,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/2015je004992","text":"Publisher Index Page"},{"id":325939,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Mars","volume":"121","issue":"8","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-25","publicationStatus":"PW","scienceBaseUri":"57a1c433e4b006cb45552c4a","contributors":{"authors":[{"text":"Becerra, Patricio","contributorId":173341,"corporation":false,"usgs":false,"family":"Becerra","given":"Patricio","email":"","affiliations":[],"preferred":false,"id":644322,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Byrne, Shane","contributorId":53513,"corporation":false,"usgs":false,"family":"Byrne","given":"Shane","affiliations":[{"id":7042,"text":"University of Arizona","active":true,"usgs":false}],"preferred":false,"id":644323,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sori, Michael M.","contributorId":173342,"corporation":false,"usgs":false,"family":"Sori","given":"Michael","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":644324,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sutton, Sarah","contributorId":173271,"corporation":false,"usgs":false,"family":"Sutton","given":"Sarah","affiliations":[{"id":27205,"text":"U. Arizona","active":true,"usgs":false}],"preferred":false,"id":644325,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Herkenhoff, Kenneth E. 0000-0002-3153-6663 kherkenhoff@usgs.gov","orcid":"https://orcid.org/0000-0002-3153-6663","contributorId":2275,"corporation":false,"usgs":true,"family":"Herkenhoff","given":"Kenneth","email":"kherkenhoff@usgs.gov","middleInitial":"E.","affiliations":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"preferred":true,"id":644326,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}} ,{"id":70171250,"text":"ofr20161069 - 2016 - Analysis of seafloor change at Breton Island, Gosier Shoals, and surrounding waters, 1869–2014, Breton National Wildlife Refuge, Louisiana","interactions":[],"lastModifiedDate":"2016-08-05T16:03:06","indexId":"ofr20161069","displayToPublicDate":"2016-08-01T14:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2016-1069","title":"Analysis of seafloor change at Breton Island, Gosier Shoals, and surrounding waters, 1869–2014, Breton National Wildlife Refuge, Louisiana","docAbstract":"Characterizing bathymetric change in coastal environments is an important component in understanding shoreline evolution, especially along barrier island platforms. Bathymetric change is a function of the regional sediment budget, long-term wave and current patterns, and episodic impact from high-energy events such as storms. Human modifications may also cause changes in seafloor elevation. This study, conducted by the U.S. Geological Survey in collaboration with the U.S. Fish and Wildlife Service, evaluates bathymetric and volumetric change and sediment characteristics around Breton Island and Gosier Shoals located offshore of the Mississippi River Delta in Louisiana. This area has been affected by significant storm events such as Hurricane Katrina in 2005. Sedimentation patterns at Breton Island and offshore have also been modified by the excavation of a shipping channel north of the island. Four time periods are considered that encompass these episodes and include long-term change and short-term storm recovery: 1869–2014, 1869–1920, 1920–2014, and 2007–2014. Finally, sediment characteristics are reported in the context of seafloor elevation.
","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20161069","collaboration":"Prepared in cooperation with the U.S. Fish and Wildlife Service","usgsCitation":"Flocks, J.G., and Terrano, J.F., 2016, Analysis of seafloor change at Breton Island, Gosier Shoals, and surrounding waters, 1869–2014, Breton National Wildlife Refuge, Louisiana: U.S. Geological Survey Open-File Report 2016–1069, 27 p., https://dx.doi.org/10.3133/ofr20161069.","productDescription":"Report: vi, 27 p.; Data Releases","numberOfPages":"34","onlineOnly":"Y","additionalOnlineFiles":"Y","ipdsId":"IP-073884","costCenters":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":324961,"rank":4,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/publication/ds1005","text":"Data Series 1005","description":"OFR 2016-1069","linkHelpText":"Archive of Bathymetry and Backscatter Data Collected in 2014 Nearshore Breton and Gosier Islands, Breton National Wildlife Refuge, Louisiana"},{"id":324963,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://dx.doi.org/10.5066/F7XS5SGM","text":"USGS data release - A GIS Compilation of Vector Shorelines and Associated Shoreline Change Data for Breton Island, Louisiana: 1869–2014","description":"OFR 2016-1069"},{"id":324960,"rank":3,"type":{"id":7,"text":"Companion Files"},"url":"https://dx.doi.org/10.3133/ofr20161039","text":"Open-File Report 2016–1039","description":"OFR 2016-1069","linkHelpText":"Analysis of shoreline and geomorphic change for Breton Island, Louisiana, from 1869 to 2014"},{"id":324962,"rank":5,"type":{"id":30,"text":"Data Release"},"url":"https://dx.doi.org/10.5066/F70G3H6G","text":"USGS data release - Topobathymetric Lidar Survey of Breton and Gosier Islands, Louisiana, January 16 and 18, 2014","description":"OFR 2016-1069"},{"id":324958,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2016/1069/coverthb.jpg"},{"id":324959,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2016/1069/ofr20161069.pdf","text":"Report","size":"7.40 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2016-1069"}],"country":"United States","state":"Louisana","otherGeospatial":"Breton Island, Breton National Wildlife Refuge, Gosier Shoals","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -89.07234191894531,\n 29.471883455244765\n ],\n [\n -88.98994445800781,\n 29.538216607905866\n ],\n [\n -89.07096862792969,\n 29.614057949691468\n ],\n [\n -89.31060791015624,\n 29.44438130948883\n ],\n [\n -89.22477722167967,\n 29.361231724636678\n ],\n [\n -89.19525146484375,\n 29.38576493113888\n ],\n [\n -89.14581298828125,\n 29.387559811639232\n ],\n [\n -89.10804748535155,\n 29.352254684201622\n ],\n [\n -89.0826416015625,\n 29.369011186354562\n ],\n [\n -89.07920837402344,\n 29.39952487234379\n ],\n [\n -89.05654907226562,\n 29.4186660412453\n ],\n [\n -89.05517578125,\n 29.44916482692468\n ],\n [\n -89.07234191894531,\n 29.471883455244765\n ]\n ]\n ]\n }\n }\n ]\n}","contact":"Director, St. Petersburg Coastal and Marine Science Center
U.S. Geological Survey
600 4th Street South
St. Petersburg, FL 33701
(727) 502–8000
http://coastal.er.usgs.gov
The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards project, conducts baseline and storm-response photography missions to document and understand the changes in vulnerability of the Nation's coasts to extreme storms. On September 18–19, 2015, the USGS conducted an oblique aerial photographic survey from Navarre Beach, Florida, to Breton Island, Louisiana, aboard a Maule MT57 (aircraft) at an altitude of 500 feet (ft) and approximately 1,200 ft offshore. This mission was conducted to collect baseline data for assessing incremental changes in the beach and nearshore area since the last survey, flown in September 2014. The data can be used in the assessment of future coastal change.
\nThe photographs provided in this report are Joint Photographic Experts Group (JPEG) images. ExifTool was used to add the following to the header of each photograph: time of collection, Global Positioning System (GPS) latitude, GPS longitude, keywords, credit, artist (photographer), caption, copyright, and contact information. The photograph locations are an estimate of the position of the aircraft at the time the photograph was taken and do not indicate the location of any feature in the images (see the Navigation Data page). These photographs document the state of the barrier islands and other coastal features at the time of the survey. Pages containing thumbnail images of the photographs, referred to as contact sheets, were created in 5-minute segments of flight time. These segments can be found on the Photographs and Maps page. Photographs can be opened directly with any JPEG-compatible image viewer by clicking on a thumbnail on the contact sheet.
\nIn addition to the photographs, a Google Earth Keyhole Markup Language (KML) file is provided and can be used to view the images by clicking on the marker and then the thumbnail or the link below the thumbnail. The KML file was created using the photographic navigation files. This KML file can be found in the kml folder.
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As part of the Barrier Island Monitoring Project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys off Breton and Gosier Islands, Louisiana, in July and August of 2014. To assist the United States Fish and Wildlife Service (USFWS) with restoration planning efforts, the USGS was tasked with answering fundamental questions about the physical environment of the southern Chandeleur Islands, including the geology, morphology, and oceanography. Baseline data needed to answer these questions were either insufficient or missing. The USGS conducted a comprehensive geologic investigation in the summer of 2014, collecting geophysical and sedimentological data.
Breton Island, located at the southern end of the Chandeleur Island chain in southeastern Louisiana, was recognized as a natural, globally significant nesting sanctuary for several bird species and was established as the Breton National Wildlife Refuge (NWR) in 1904. The areal extent of Breton Island has diminished 90 percent since 1920. Land loss is attributed to ongoing relative sea-level rise, diminished sediment supply, and storm impacts. The bird population on Breton Island has also declined over the years, most notably after Hurricane George in 1998 and after Hurricane Katrina in 2015; the latter completely submerged the island. Despite decreasing habitable acreage, migratory seabirds continue to return and nest on Breton Island. To prevent the island from being submerged in the future, and to protect, stabilize, and provide more nesting and foraging areas for the bird population, the USFWS proposed a restoration effort to rebuild Breton Island to its pre-Katrina footprint.
This data series serves as an archive of processed interferometric swath and single-beam bathymetry data, and side-scan sonar data, collected in the nearshore of Breton and Gosier Islands, NWR, Louisiana. The data were collected during two USGS cruises (USGS Field Activity Numbers 2014-314-FA and 2014-317-FA) in July and August 2014. Geographic information system data products include a 100-meter-cell-size interpolated bathymetry grid, trackline maps, and point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata.
NOTE: These data are scientific in nature and are not to be used for navigation. Any use of trade names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
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Climate change is a major challenge for managers of protected areas world-wide, and managers need information about future climate conditions within protected areas. Prior studies of climate change effects in protected areas have largely focused on average climatic conditions. However, extreme weather may have stronger effects on wildlife populations and habitats than changes in averages. Our goal was to quantify future changes in the frequency of extreme heat, drought, and false springs, during the avian breeding season, in 415 National Wildlife Refuges in the conterminous United States. We analyzed spatially detailed data on extreme weather frequencies during the historical period (1950–2005) and under different scenarios of future climate change by mid- and late-21st century. We found that all wildlife refuges will likely experience substantial changes in the frequencies of extreme weather, but the types of projected changes differed among refuges. Extreme heat is projected to increase dramatically in all wildlife refuges, whereas changes in droughts and false springs are projected to increase or decrease on a regional basis. Half of all wildlife refuges are projected to see increases in frequency (> 20% higher than the current rate) in at least two types of weather extremes by mid-century. Wildlife refuges in the Southwest and Pacific Southwest are projected to exhibit the fastest rates of change, and may deserve extra attention. Climate change adaptation strategies in protected areas, such as the U.S. wildlife refuges, may need to seriously consider future changes in extreme weather, including the considerable spatial variation of these changes.
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The interface is named after the International River Interface Cooperative (iRIC), the group that constructed the interface and many of the current solvers included in iRIC. The interface is entirely free to any user and currently houses thirteen models ranging from simple one-dimensional models through three-dimensional large-eddy simulation models. Solvers are only loosely coupled to the interface so it is straightforward to modify existing solvers or to introduce other solvers into the system. Six of the most widely-used solvers are described in detail including example calculations to serve as an aid for users choosing what approach might be most appropriate for their own applications. The example calculations range from practical computations of bed evolution in natural rivers to highly detailed predictions of the development of small-scale bedforms on an initially flat bed. The remaining solvers are also briefly described. 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We developed and compared two indices to assess the vulnerability of stream fish in Missouri, USA based on species environmental tolerances, rarity, range size, dispersal ability and on the average connectivity of the streams occupied by each species. These two indices differed in how environmental tolerance was classified (i.e., vulnerability to habitat alteration, changes in stream temperature, and changes to flow regimes). Environmental tolerance was classified based on measured species responses to habitat alteration, and extremes in stream temperatures and flow conditions for one index, while environmental tolerance for the second index was based on species’ traits. The indices were compared to determine if vulnerability scores differed by index or state listing status. We also evaluated the spatial distribution of species classified as vulnerable to habitat alteration, changes in stream temperature, and change in flow regimes. Vulnerability scores were calculated for all 133 species with the trait association index, while only 101 species were evaluated using the species response index, because 32 species lacked data to analyze for a response. Scores from the trait association index were greater than the species response index. This is likely due to the species response index's inability to evaluate many rare species, which generally had high vulnerability scores for the trait association index. The indices were consistent in classifying vulnerability to habitat alteration, but varied in their classification of vulnerability due to increases in stream temperature and alterations to flow regimes, likely because extremes in current climate may not fully capture future conditions and their influence on stream fish communities. Both indices showed higher mean vulnerability scores for listed species than unlisted species, which provided a coarse measure of validation. Our indices classified species identified as being in need of conservation by the state of Missouri as highly vulnerable. The distribution of vulnerable species in Missouri showed consistent patterns between indices, with the more forest-dominated, groundwater fed streams in the Ozark subregion generally having higher numbers and proportions of vulnerable species per site than subregions that were agriculturally dominated with more overland flow. These results suggest that both indices will identify similar habitats as conservation action targets despite discrepancies in the classification of vulnerable species. Our vulnerability assessment provides a framework that can be refined and used in other regions.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.ecolind.2016.03.013","usgsCitation":"Sievert, N., Paukert, C.P., Tsang, Y., and Infante, D.M., 2016, Development and assessment of indices to determine stream fish vulnerability to climate change and habitat alteration: Ecological Indicators, v. 67, p. 403-416, https://doi.org/10.1016/j.ecolind.2016.03.013.","productDescription":"14 p.","startPage":"403","endPage":"416","ipdsId":"IP-069170","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":470709,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.ecolind.2016.03.013","text":"Publisher Index Page"},{"id":331824,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"67","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"584bd0dee4b077fc20250e0e","chorus":{"doi":"10.1016/j.ecolind.2016.03.013","url":"http://dx.doi.org/10.1016/j.ecolind.2016.03.013","publisher":"Elsevier BV","authors":"Sievert Nicholas A., Paukert Craig P., Tsang Yin-Phan, Infante Dana","journalName":"Ecological Indicators","publicationDate":"8/2016"},"contributors":{"authors":[{"text":"Sievert, Nicholas A. 0000-0003-3160-7596","orcid":"https://orcid.org/0000-0003-3160-7596","contributorId":177341,"corporation":false,"usgs":false,"family":"Sievert","given":"Nicholas A.","affiliations":[],"preferred":false,"id":655396,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Paukert, Craig P. 0000-0002-9369-8545 cpaukert@usgs.gov","orcid":"https://orcid.org/0000-0002-9369-8545","contributorId":879,"corporation":false,"usgs":true,"family":"Paukert","given":"Craig","email":"cpaukert@usgs.gov","middleInitial":"P.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":655388,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Tsang, Yin-Phan","contributorId":177342,"corporation":false,"usgs":false,"family":"Tsang","given":"Yin-Phan","email":"","affiliations":[],"preferred":false,"id":655397,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Infante, Dana M. 0000-0003-1385-1587","orcid":"https://orcid.org/0000-0003-1385-1587","contributorId":150821,"corporation":false,"usgs":false,"family":"Infante","given":"Dana","email":"","middleInitial":"M.","affiliations":[{"id":18112,"text":"Dept. of Fisheries and Wildlife,","active":true,"usgs":false}],"preferred":false,"id":655398,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70178047,"text":"70178047 - 2016 - Multispecies cccupancy modeling as a tool for evaluating the status and distribution of Darters in the Elk River, Tennessee","interactions":[],"lastModifiedDate":"2016-11-01T12:38:58","indexId":"70178047","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3624,"text":"Transactions of the American Fisheries Society","active":true,"publicationSubtype":{"id":10}},"title":"Multispecies cccupancy modeling as a tool for evaluating the status and distribution of Darters in the Elk River, Tennessee","docAbstract":"Sixteen darter species, including the federally endangered Boulder Darter Etheostoma wapiti, are known to occur in the Elk River, a large, flow-regulated tributary of the Tennessee River, Tennessee–Alabama. Since the construction of Tims Ford Dam (TFD) in 1970, habitat modification caused by cold, hypolimnetic water releases and peak-demand hydropower generation has contributed to population declines and range reductions for numerous aquatic species in the main-stem Elk River. We developed Bayesian hierarchical multispecies occupancy models to determine the influence of site- and species-level characteristics on darter occurrence by using presence–absence data for 15 species collected from 39 study sites. Modeling results indicated that large-river obligate species, such as the Boulder Darter, were 6.92 times more likely to occur for every 37-km increase in the distance downstream from TFD. In contrast, small-stream species were 2.35 times less likely and cosmopolitan species were 1.88 times less likely to occur for every 37-km increase in distance downstream from TFD. The probability of occurrence for darter species also had a strong negative relationship with the absence of cobble and boulder substrates and the presence of high silt levels, particularly for species that require boulder substrates during spawning. Although total darter species richness was similar across all 39 sample sites, the composition of darter assemblages varied substantially among locations, presumably due in part to species-specific habitat affinities and hydrothermal conditions. The use of multispecies occupancy models allowed us to account for the incomplete detection of species while estimating the influence of physical habitat characteristics and species traits on darter occurrences, including rarely observed species that would have been difficult to model individually.
","language":"English","publisher":"Taylor & Francis","doi":"10.1080/00028487.2016.1201002","usgsCitation":"Potoka, K.M., Shea, C.P., and Bettoli, P.W., 2016, Multispecies cccupancy modeling as a tool for evaluating the status and distribution of Darters in the Elk River, Tennessee: Transactions of the American Fisheries Society, v. 145, no. 5, p. 1110-1121, https://doi.org/10.1080/00028487.2016.1201002.","productDescription":"12 p.","startPage":"1110","endPage":"1121","ipdsId":"IP-066109","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":330600,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Tennessee","otherGeospatial":"Elk River","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -87.05429077148438,\n 34.99287873327227\n ],\n [\n -87.05429077148438,\n 35.31736632923788\n ],\n [\n -86.14517211914061,\n 35.31736632923788\n ],\n [\n -86.14517211914061,\n 34.99287873327227\n ],\n [\n -87.05429077148438,\n 34.99287873327227\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"145","issue":"5","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationDate":"2016-08-12","publicationStatus":"PW","scienceBaseUri":"5819a9c3e4b0bb36a4c9101d","chorus":{"doi":"10.1080/00028487.2016.1201002","url":"http://dx.doi.org/10.1080/00028487.2016.1201002","publisher":"Informa UK Limited","authors":"Potoka Kathryn M., Shea Colin P., Bettoli Phillip W.","journalName":"Transactions of the American Fisheries Society","publicationDate":"8/12/2016"},"contributors":{"authors":[{"text":"Potoka, Kathryn M.","contributorId":176506,"corporation":false,"usgs":false,"family":"Potoka","given":"Kathryn","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":652603,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Shea, Colin P.","contributorId":140147,"corporation":false,"usgs":false,"family":"Shea","given":"Colin","email":"","middleInitial":"P.","affiliations":[{"id":13267,"text":"Warnell School of Forestry and Natural Resources, University of Georgia","active":true,"usgs":false}],"preferred":false,"id":652604,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bettoli, Phillip William pbettoli@usgs.gov","contributorId":1919,"corporation":false,"usgs":true,"family":"Bettoli","given":"Phillip","email":"pbettoli@usgs.gov","middleInitial":"William","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":652592,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}} ,{"id":70175381,"text":"70175381 - 2016 - Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain","interactions":[],"lastModifiedDate":"2016-08-09T09:09:41","indexId":"70175381","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5166,"text":"Northwest Geology","active":true,"publicationSubtype":{"id":10}},"title":"Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain","docAbstract":"No abstract available.
","largerWorkTitle":"Geology of the eastern Snake River Plain and surrounding highlands","language":"English","publisher":"Tobacco Root Geological Society","usgsCitation":"McCurry, M., Bartholomay, R.C., Hodges, M., and Podgorney, R., 2016, Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain: Northwest Geology, v. 45, p. 125-154.","productDescription":"30 p.","startPage":"125","endPage":"154","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-075045","costCenters":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"links":[{"id":326288,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"45","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57aaffb8e4b05e859be0fb1d","contributors":{"authors":[{"text":"McCurry, Michael","contributorId":173529,"corporation":false,"usgs":false,"family":"McCurry","given":"Michael","email":"","affiliations":[{"id":26917,"text":"Idaho State University, Pocatello, ID","active":true,"usgs":false}],"preferred":false,"id":644998,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bartholomay, Roy C. 0000-0002-4809-9287 rcbarth@usgs.gov","orcid":"https://orcid.org/0000-0002-4809-9287","contributorId":1131,"corporation":false,"usgs":true,"family":"Bartholomay","given":"Roy","email":"rcbarth@usgs.gov","middleInitial":"C.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":true,"id":644996,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hodges, Mary K. V. 0000-0001-8708-0354 mkhodges@usgs.gov","orcid":"https://orcid.org/0000-0001-8708-0354","contributorId":3023,"corporation":false,"usgs":true,"family":"Hodges","given":"Mary K. V.","email":"mkhodges@usgs.gov","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":false,"id":644997,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Podgorney, Robert","contributorId":173530,"corporation":false,"usgs":false,"family":"Podgorney","given":"Robert","email":"","affiliations":[{"id":27243,"text":"Idaho National Laboratory","active":true,"usgs":false}],"preferred":false,"id":644999,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70184324,"text":"70184324 - 2016 - Desert bighorn sheep lambing habitat: Parturition, nursery, and predation sites","interactions":[],"lastModifiedDate":"2017-03-07T15:55:33","indexId":"70184324","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2508,"text":"Journal of Wildlife Management","active":true,"publicationSubtype":{"id":10}},"title":"Desert bighorn sheep lambing habitat: Parturition, nursery, and predation sites","docAbstract":"Fitness of female ungulates is determined by neonate survival and lifetime reproductive success. Therefore, adult female ungulates should adopt behaviors and habitat selection patterns that enhance survival of neonates during parturition and lactation. Parturition site location may play an important role in neonatal mortality of desert bighorn sheep (Ovis canadensis mexicana) when lambs are especially vulnerable to predation, but parturition sites are rarely documented for this species. Our objectives were to assess environmental characteristics at desert bighorn parturition, lamb nursery, and predation sites and to assess differences in habitat characteristics between parturition sites and nursery group sites, and predation sites and nursery group sites. We used vaginal implant transmitters (VITs) to identify parturition sites and capture neonates. We then compared elevation, slope, terrain ruggedness, and visibility at parturition, nursery, and lamb predation sites with paired random sites and compared characteristics of parturition sites and lamb predation sites to those of nursery sites. When compared to random sites, odds of a site being a parturition site were highest at intermediate slopes and decreased with increasing female visibility. Odds of a site being a predation site increased with decreasing visibility. When compared to nursery group sites, odds of a site being a parturition site had a quadratic relationship with elevation and slope, with odds being highest at intermediate elevations and intermediate slopes. When we compared predation sites to nursery sites, odds of a site being a predation were highest at low elevation areas with high visibility and high elevation areas with low visibility likely because of differences in hunting strategies of coyote (Canis latrans) and puma (Puma concolor). Parturition sites were lower in elevation and slope than nursery sites. Understanding selection of parturition sites by adult females and how habitat characteristics at these sites differ from those at predation and nursery sites can provide insight into strategies employed by female desert bighorn sheep and other species during and after parturition to promote neonate survival.
","language":"English","publisher":"Wiley","doi":"10.1002/jwmg.21092","usgsCitation":"Karsch, R., Cain, J.W., Rominger, E.M., and Goldstein, E., 2016, Desert bighorn sheep lambing habitat: Parturition, nursery, and predation sites: Journal of Wildlife Management, v. 80, no. 6, p. 1069-1080, https://doi.org/10.1002/jwmg.21092.","productDescription":"12 p.","startPage":"1069","endPage":"1080","ipdsId":"IP-063342","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":336974,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"80","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-05-04","publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4b4","contributors":{"authors":[{"text":"Karsch, Rebekah C.","contributorId":64159,"corporation":false,"usgs":true,"family":"Karsch","given":"Rebekah C.","affiliations":[],"preferred":false,"id":681080,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Cain, James W. III 0000-0003-4743-516X jwcain@usgs.gov","orcid":"https://orcid.org/0000-0003-4743-516X","contributorId":4063,"corporation":false,"usgs":true,"family":"Cain","given":"James","suffix":"III","email":"jwcain@usgs.gov","middleInitial":"W.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":681009,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rominger, Eric M.","contributorId":91038,"corporation":false,"usgs":true,"family":"Rominger","given":"Eric","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":681081,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Goldstein, Elise J.","contributorId":32825,"corporation":false,"usgs":true,"family":"Goldstein","given":"Elise J.","affiliations":[],"preferred":false,"id":681082,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70175430,"text":"70175430 - 2016 - Measuring, interpreting, and responding to changes in coral reefs: A challenge for biologists, geologist, and managers","interactions":[],"lastModifiedDate":"2016-08-31T12:53:44","indexId":"70175430","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Measuring, interpreting, and responding to changes in coral reefs: A challenge for biologists, geologist, and managers","docAbstract":"What, exactly, is a coral reef? And how have the world’s reefs changed in the last several decades? What are the stressors undermining reef structure and function? Given the predicted effects of climate change, do reefs have a future? Is it possible to “manage” coral reefs for resilience? What can coral reef scientists contribute to improve protection and management of coral reefs? What insights can biologists and geologists provide regarding the persistence of coral reefs on a human timescale? What is reef change to a biologist… to a geologist?
Clearly, there are many challenging questions. In this chapter, we present some of our thoughts on monitoring and management of coral reefs in US national parks in the Caribbean and western Atlantic based on our experience as members of monitoring teams. We reflect on the need to characterize and evaluate reefs, on how to conduct high-quality monitoring programs, and on what we can learn from biological and geological experiments and investigations. We explore the possibility that specific steps can be taken to “manage” coral reefs for greater resilience.
","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Coral reefs at the crossroads","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Springer","doi":"10.1007/978-94-017-7567-0_12","usgsCitation":"Rogers, C.S., and Miller, J., 2016, Measuring, interpreting, and responding to changes in coral reefs: A challenge for biologists, geologist, and managers, chap. of Coral reefs at the crossroads, v. 6, p. 277-292, https://doi.org/10.1007/978-94-017-7567-0_12.","productDescription":"16 p.","startPage":"277","endPage":"292","ipdsId":"IP-037090","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":328134,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"6","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationDate":"2016-07-28","publicationStatus":"PW","scienceBaseUri":"57c7ffbae4b0f2f0cebfc2f9","contributors":{"editors":[{"text":"Hubbard, Dennis K.","contributorId":174188,"corporation":false,"usgs":false,"family":"Hubbard","given":"Dennis","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":647666,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Rogers, Caroline S. 0000-0001-9056-6961 caroline_rogers@usgs.gov","orcid":"https://orcid.org/0000-0001-9056-6961","contributorId":3126,"corporation":false,"usgs":true,"family":"Rogers","given":"Caroline","email":"caroline_rogers@usgs.gov","middleInitial":"S.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":647667,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Lipps, Jere H.","contributorId":174189,"corporation":false,"usgs":false,"family":"Lipps","given":"Jere","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":647668,"contributorType":{"id":2,"text":"Editors"},"rank":3},{"text":"Stanley, George D. Jr.","contributorId":174190,"corporation":false,"usgs":false,"family":"Stanley","given":"George","suffix":"Jr.","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":647669,"contributorType":{"id":2,"text":"Editors"},"rank":4}],"authors":[{"text":"Rogers, Caroline S. 0000-0001-9056-6961 caroline_rogers@usgs.gov","orcid":"https://orcid.org/0000-0001-9056-6961","contributorId":3126,"corporation":false,"usgs":true,"family":"Rogers","given":"Caroline","email":"caroline_rogers@usgs.gov","middleInitial":"S.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":645166,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Miller, Jeff","contributorId":46400,"corporation":false,"usgs":true,"family":"Miller","given":"Jeff","affiliations":[{"id":50397,"text":"SSAI","active":true,"usgs":false}],"preferred":false,"id":645167,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}} ,{"id":70184322,"text":"70184322 - 2016 - Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane","interactions":[],"lastModifiedDate":"2017-03-07T16:00:00","indexId":"70184322","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1015,"text":"Biological Conservation","active":true,"publicationSubtype":{"id":10}},"title":"Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane","docAbstract":"The importance of transient dynamics of structured populations is increasingly recognized in ecology, yet these implications are not largely considered in conservation practices. We investigate transient and long-term population dynamics to demonstrate the process and utility of incorporating transient dynamics into conservation research and to better understand the population management of slow life-history species; these species can be theoretically highly sensitive to short- and long-term transient effects. We are specifically interested in the effects of anthropogenic removal of individuals from populations, such as caused by harvest, poaching, translocation, or incidental take. We use the sandhill crane (Grus canadensis) as an exemplar species; it is long-lived, has low reproduction, late maturity, and multiple populations are subject to sport harvest. We found sandhill cranes to have extremely high potential, but low likelihood for transient dynamics, even when the population is being harvested. The typically low population growth rate of slow life-history species appears to buffer against many perturbations causing large transient effects. Transient dynamics will dominate population trajectories of these species when stage structures are highly biased towards the younger and non-reproducing individuals, a situation that may be rare in established populations of long-lived animals. However, short-term transient population growth can be highly sensitive to vital rates that are relatively insensitive under equilibrium, suggesting that stage structure should be known if perturbation analysis is used to identify effective conservation strategies. For populations of slow life-history species that are not prone to large perturbations to their most productive individuals, population growth may be approximated by equilibrium dynamics.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.biocon.2016.06.014","usgsCitation":"Gerber, B.D., and Kendall, W., 2016, Considering transient population dynamics in the conservation of slow life-history species: An application to the sandhill crane: Biological Conservation, v. 200, p. 228-239, https://doi.org/10.1016/j.biocon.2016.06.014.","productDescription":"12 p.","startPage":"228","endPage":"239","ipdsId":"IP-069777","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":336976,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"200","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4bb","contributors":{"authors":[{"text":"Gerber, Brian D.","contributorId":187620,"corporation":false,"usgs":false,"family":"Gerber","given":"Brian","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":681089,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kendall, William L. 0000-0003-0084-9891 wkendall@usgs.gov","orcid":"https://orcid.org/0000-0003-0084-9891","contributorId":166709,"corporation":false,"usgs":true,"family":"Kendall","given":"William L.","email":"wkendall@usgs.gov","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":false,"id":681007,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70182200,"text":"70182200 - 2016 - Novel cell-based assay for detection of thyroid receptor beta-interacting environmental contaminants","interactions":[],"lastModifiedDate":"2018-08-07T12:09:06","indexId":"70182200","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3610,"text":"Toxicology","active":true,"publicationSubtype":{"id":10}},"title":"Novel cell-based assay for detection of thyroid receptor beta-interacting environmental contaminants","docAbstract":"Even though the presence of endocrine disrupting chemicals (EDCs) with thyroid hormone (TH)-like activities in the environment is a major health concern, the methods for their efficient detection and monitoring are still limited. Here we describe a novel cell assay, based on the translocation of a green fluorescent protein (GFP)—tagged chimeric molecule of glucocorticoid receptor (GR) and the thyroid receptor beta (TRβ) from the cytoplasm to the nucleus in the presence of TR ligands. Unlike the constitutively nuclear TRβ, this GFP-GR-TRβ chimera is cytoplasmic in the absence of hormone while translocating to the nucleus in a time- and concentration-dependent manner upon stimulation with triiodothyronine (T3) and thyroid hormone analogue, TRIAC, while the reverse triiodothyronine (3,3′,5′-triiodothyronine, or rT3) was inactive. Moreover, GFP-GR-TRβ chimera does not show any cross-reactivity with the GR-activating hormones, thus providing a clean system for the screening of TR beta-interacting EDCs. Using this assay, we demonstrated that Bisphenol A (BPA) and 3,3′,5,5′-Tetrabromobisphenol (TBBPA) induced GFP-GR-TRβ translocation at micro molar concentrations. We screened over 100 concentrated water samples from different geographic locations in the United States and detected a low, but reproducible contamination in 53% of the samples. This system provides a novel high-throughput approach for screening for endocrine disrupting chemicals (EDCs) interacting with TR beta.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.tox.2016.08.012","usgsCitation":"Stavreva, D., Varticovski, L., Levkova, L., George, A.A., Davis, L., Pegoraro, G., Blazer, V., Iwanowicz, L., and Hager, G., 2016, Novel cell-based assay for detection of thyroid receptor beta-interacting environmental contaminants: Toxicology, v. 368-369, p. 69-79, https://doi.org/10.1016/j.tox.2016.08.012.","productDescription":"11 p.","startPage":"69","endPage":"79","ipdsId":"IP-067692","costCenters":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true},{"id":34983,"text":"Contaminant Biology Program","active":true,"usgs":true}],"links":[{"id":470708,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://doi.org/10.1016/j.tox.2016.08.012","text":"External Repository"},{"id":335866,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"368-369","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58ad5fc1e4b01ccd54f8b51f","contributors":{"authors":[{"text":"Stavreva, Diana A.","contributorId":69039,"corporation":false,"usgs":true,"family":"Stavreva","given":"Diana A.","affiliations":[],"preferred":false,"id":669956,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Varticovski, Lyuba","contributorId":71857,"corporation":false,"usgs":true,"family":"Varticovski","given":"Lyuba","email":"","affiliations":[],"preferred":false,"id":669957,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Levkova, Ludmila","contributorId":181906,"corporation":false,"usgs":false,"family":"Levkova","given":"Ludmila","email":"","affiliations":[],"preferred":false,"id":669958,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"George, Anuja A.","contributorId":84651,"corporation":false,"usgs":true,"family":"George","given":"Anuja","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":669959,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Davis, Luke","contributorId":181908,"corporation":false,"usgs":false,"family":"Davis","given":"Luke","email":"","affiliations":[],"preferred":false,"id":669960,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Pegoraro, Gianluca","contributorId":181909,"corporation":false,"usgs":false,"family":"Pegoraro","given":"Gianluca","email":"","affiliations":[],"preferred":false,"id":669961,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Blazer, Vicki S. 0000-0001-6647-9614 vblazer@usgs.gov","orcid":"https://orcid.org/0000-0001-6647-9614","contributorId":150384,"corporation":false,"usgs":true,"family":"Blazer","given":"Vicki S.","email":"vblazer@usgs.gov","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":669962,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Iwanowicz, Luke R. 0000-0002-1197-6178 liwanowicz@usgs.gov","orcid":"https://orcid.org/0000-0002-1197-6178","contributorId":150383,"corporation":false,"usgs":true,"family":"Iwanowicz","given":"Luke R. ","email":"liwanowicz@usgs.gov","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":false,"id":669955,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Hager, Gordon L.","contributorId":66574,"corporation":false,"usgs":true,"family":"Hager","given":"Gordon L.","affiliations":[],"preferred":false,"id":669963,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}} ,{"id":70192565,"text":"70192565 - 2016 - The road to NHDPlus — Advancements in digital stream networks and associated catchments","interactions":[],"lastModifiedDate":"2017-11-17T11:34:42","indexId":"70192565","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2529,"text":"Journal of the American Water Resources Association","active":true,"publicationSubtype":{"id":10}},"title":"The road to NHDPlus — Advancements in digital stream networks and associated catchments","docAbstract":"A progression of advancements in Geographic Information Systems techniques for hydrologic network and associated catchment delineation has led to the production of the National Hydrography Dataset Plus (NHDPlus). NHDPlus is a digital stream network for hydrologic modeling with catchments and a suite of related geospatial data. Digital stream networks with associated catchments provide a geospatial framework for linking and integrating water-related data. Advancements in the development of NHDPlus are expected to continue to improve the capabilities of this national geospatial hydrologic framework. NHDPlus is built upon the medium-resolution NHD and, like NHD, was developed by the U.S. Environmental Protection Agency and U.S. Geological Survey to support the estimation of streamflow and stream velocity used in fate-and-transport modeling. Catchments included with NHDPlus were created by integrating vector information from the NHD and from the Watershed Boundary Dataset with the gridded land surface elevation as represented by the National Elevation Dataset. NHDPlus is an actively used and continually improved dataset. Users recognize the importance of a reliable stream network and associated catchments. The NHDPlus spatial features and associated data tables will continue to be improved to support regional water quality and streamflow models and other user-defined applications.
","language":"English","publisher":"Wiley","doi":"10.1111/1752-1688.12389","usgsCitation":"Moore, R.B., and Dewald, T.A., 2016, The road to NHDPlus — Advancements in digital stream networks and associated catchments: Journal of the American Water Resources Association, v. 52, no. 4, p. 890-900, https://doi.org/10.1111/1752-1688.12389.","productDescription":"11 p.","startPage":"890","endPage":"900","ipdsId":"IP-067213","costCenters":[{"id":405,"text":"NH/VT office of New England Water Science Center","active":true,"usgs":true}],"links":[{"id":482073,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/1752-1688.12389","text":"Publisher Index Page"},{"id":349062,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"52","issue":"4","publishingServiceCenter":{"id":11,"text":"Pembroke PSC"},"noUsgsAuthors":false,"publicationDate":"2016-02-11","publicationStatus":"PW","scienceBaseUri":"5a60fd04e4b06e28e9c24672","contributors":{"authors":[{"text":"Moore, Richard B. rmoore@usgs.gov","contributorId":1464,"corporation":false,"usgs":true,"family":"Moore","given":"Richard","email":"rmoore@usgs.gov","middleInitial":"B.","affiliations":[{"id":405,"text":"NH/VT office of New England Water Science Center","active":true,"usgs":true}],"preferred":true,"id":716213,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Dewald, Thomas A.","contributorId":198480,"corporation":false,"usgs":false,"family":"Dewald","given":"Thomas","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":716214,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70182808,"text":"70182808 - 2016 - The influence of vegetation cover on debris-flow density during an extreme rainfall in the northern Colorado Front Range","interactions":[],"lastModifiedDate":"2017-03-01T10:34:39","indexId":"70182808","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1796,"text":"Geology","active":true,"publicationSubtype":{"id":10}},"title":"The influence of vegetation cover on debris-flow density during an extreme rainfall in the northern Colorado Front Range","docAbstract":"We explored regional influences on debris-flow initiation throughout the Colorado Front Range (Colorado, USA) by exploiting a unique data set of more than 1100 debris flows that initiated during a 5 day rainstorm in 2013. Using geospatial data, we examined the influence of rain, hillslope angle, hillslope aspect, and vegetation density on debris-flow initiation. In particular we used a greenness index to differentiate areas of high tree density from grass and bare soil. The data demonstrated an overwhelming propensity for debris-flow initiation on south-facing hillslopes. However, when the debris-flow density was analyzed with respect to total rainfall and greenness we found that most debris flows occurred in areas of high rainfall and low tree density, regardless of hillslope aspect. These results indicate that present-day tree density exerts a stronger influence on debris-flow initiation locations than aspect-driven variations in soil and bedrock properties that developed over longer time scales.
","language":"English","publisher":"Geological Society of America","doi":"10.1130/G38096.1","usgsCitation":"Rengers, F.K., McGuire, L., Coe, J.A., Kean, J.W., Baum, R.L., Staley, D.M., and Godt, J.W., 2016, The influence of vegetation cover on debris-flow density during an extreme rainfall in the northern Colorado Front Range: Geology, v. 44, no. 10, p. 823-826, https://doi.org/10.1130/G38096.1.","productDescription":"4 p. ","startPage":"823","endPage":"826","ipdsId":"IP-077868","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":336724,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"44","issue":"10","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2016-10-01","publicationStatus":"PW","scienceBaseUri":"58b7eba7e4b01ccd5500bb13","contributors":{"authors":[{"text":"Rengers, Francis K. 0000-0002-1825-0943 frengers@usgs.gov","orcid":"https://orcid.org/0000-0002-1825-0943","contributorId":150422,"corporation":false,"usgs":true,"family":"Rengers","given":"Francis","email":"frengers@usgs.gov","middleInitial":"K.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673837,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McGuire, Luke lmcguire@usgs.gov","contributorId":167018,"corporation":false,"usgs":true,"family":"McGuire","given":"Luke","email":"lmcguire@usgs.gov","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":false,"id":673838,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Coe, Jeffrey A. 0000-0002-0842-9608 jcoe@usgs.gov","orcid":"https://orcid.org/0000-0002-0842-9608","contributorId":1333,"corporation":false,"usgs":true,"family":"Coe","given":"Jeffrey","email":"jcoe@usgs.gov","middleInitial":"A.","affiliations":[{"id":309,"text":"Geology and Geophysics Science Center","active":true,"usgs":true},{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673839,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kean, Jason W. 0000-0003-3089-0369 jwkean@usgs.gov","orcid":"https://orcid.org/0000-0003-3089-0369","contributorId":1654,"corporation":false,"usgs":true,"family":"Kean","given":"Jason","email":"jwkean@usgs.gov","middleInitial":"W.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673840,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Baum, Rex L. 0000-0001-5337-1970 baum@usgs.gov","orcid":"https://orcid.org/0000-0001-5337-1970","contributorId":1288,"corporation":false,"usgs":true,"family":"Baum","given":"Rex","email":"baum@usgs.gov","middleInitial":"L.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673841,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Staley, Dennis M. 0000-0002-2239-3402 dstaley@usgs.gov","orcid":"https://orcid.org/0000-0002-2239-3402","contributorId":4134,"corporation":false,"usgs":true,"family":"Staley","given":"Dennis","email":"dstaley@usgs.gov","middleInitial":"M.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":680378,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Godt, Jonathan W. 0000-0002-8737-2493 jgodt@usgs.gov","orcid":"https://orcid.org/0000-0002-8737-2493","contributorId":1166,"corporation":false,"usgs":true,"family":"Godt","given":"Jonathan","email":"jgodt@usgs.gov","middleInitial":"W.","affiliations":[{"id":508,"text":"Office of the AD Hazards","active":true,"usgs":true},{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":673842,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}} ,{"id":70184323,"text":"70184323 - 2016 - Transmission of influenza reflects seasonality of wild birds across the annual cycle","interactions":[],"lastModifiedDate":"2018-06-20T20:24:49","indexId":"70184323","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1466,"text":"Ecology Letters","active":true,"publicationSubtype":{"id":10}},"title":"Transmission of influenza reflects seasonality of wild birds across the annual cycle","docAbstract":"Influenza A Viruses (IAV) in nature must overcome shifting transmission barriers caused by the mobility of their primary host, migratory wild birds, that change throughout the annual cycle. Using a phylogenetic network of viral sequences from North American wild birds (2008–2011) we demonstrate a shift from intraspecific to interspecific transmission that along with reassortment, allows IAV to achieve viral flow across successive seasons from summer to winter. Our study supports amplification of IAV during summer breeding seeded by overwintering virus persisting locally and virus introduced from a wide range of latitudes. As birds migrate from breeding sites to lower latitudes, they become involved in transmission networks with greater connectivity to other bird species, with interspecies transmission of reassortant viruses peaking during the winter. We propose that switching transmission dynamics may be a critical strategy for pathogens that infect mobile hosts inhabiting regions with strong seasonality.
","language":"English","publisher":"Wiley","doi":"10.1111/ele.12629","usgsCitation":"Hill, N., Meixell, B.W., Ma, E.J., Lindberg, M., Boyce, W.M., and Runstadler, J.A., 2016, Transmission of influenza reflects seasonality of wild birds across the annual cycle: Ecology Letters, v. 19, no. 8, p. 915-925, https://doi.org/10.1111/ele.12629.","productDescription":"11 p.","startPage":"915","endPage":"925","ipdsId":"IP-068582","costCenters":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"links":[{"id":336975,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"19","issue":"8","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-21","publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4b8","contributors":{"authors":[{"text":"Hill, Nichola J.","contributorId":30342,"corporation":false,"usgs":true,"family":"Hill","given":"Nichola J.","affiliations":[],"preferred":false,"id":681083,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Meixell, Brandt W. 0000-0002-6738-0349 bmeixell@usgs.gov","orcid":"https://orcid.org/0000-0002-6738-0349","contributorId":138716,"corporation":false,"usgs":true,"family":"Meixell","given":"Brandt","email":"bmeixell@usgs.gov","middleInitial":"W.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":681085,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ma, Eric J.","contributorId":177788,"corporation":false,"usgs":false,"family":"Ma","given":"Eric","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":681084,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lindberg, Mark S.","contributorId":89466,"corporation":false,"usgs":false,"family":"Lindberg","given":"Mark S.","affiliations":[{"id":6752,"text":"University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":681086,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Boyce, Walter M.","contributorId":75671,"corporation":false,"usgs":true,"family":"Boyce","given":"Walter","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":681087,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Runstadler, Jonathan A.","contributorId":24706,"corporation":false,"usgs":false,"family":"Runstadler","given":"Jonathan","email":"","middleInitial":"A.","affiliations":[{"id":12444,"text":"Massachusetts Institute of Technology","active":true,"usgs":false}],"preferred":false,"id":681088,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}} ,{"id":70182794,"text":"70182794 - 2016 - Smokey comes of age: Unmanned aerial systems for fire management","interactions":[],"lastModifiedDate":"2017-03-01T11:41:00","indexId":"70182794","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1701,"text":"Frontiers in Ecology and the Environment","active":true,"publicationSubtype":{"id":10}},"title":"Smokey comes of age: Unmanned aerial systems for fire management","docAbstract":"During the past century, fire management has focused on techniques both to protect human communities from catastrophic wildfire and to maintain fire-dependent ecological systems. However, despite a large and increasing allocation of resources and personnel to achieve these goals, fire management objectives at regional to global scales are not being met. Current fire management techniques are clearly inadequate for the challenges faced by fire managers, and technological innovations are needed. Advances in unmanned aerial systems (UAS) technology provide opportunities for innovation in fire management and science. In many countries, fire management organizations are beginning to explore the potential of UAS for monitoring fires. We have taken the next step and developed a prototype that can precisely ignite fires as part of wildfire suppression tactics or prescribed fires (fire intentionally ignited within predetermined conditions to reduce hazardous fuels, improve habitat, or mitigate for large wildfires). We discuss the potential for these technologies to benefit fire management activities, while acknowledging the sizeable sociopolitical barriers that prevent their immediate broad application.
","language":"English","publisher":"Wiley","doi":"10.1002/fee.1299","usgsCitation":"Twidwell, D., Allen, C.R., Detweiler, C., Higgins, J., Laney, C., and Elbaum, S., 2016, Smokey comes of age: Unmanned aerial systems for fire management: Frontiers in Ecology and the Environment, v. 14, no. 6, p. 333-339, https://doi.org/10.1002/fee.1299.","productDescription":"7 p. ","startPage":"333","endPage":"339","ipdsId":"IP-074519","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":336738,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"14","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58b7eba7e4b01ccd5500bb15","contributors":{"authors":[{"text":"Twidwell, Dirac","contributorId":187431,"corporation":false,"usgs":false,"family":"Twidwell","given":"Dirac","email":"","affiliations":[],"preferred":false,"id":680400,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Allen, Craig R. 0000-0001-8655-8272 allencr@usgs.gov","orcid":"https://orcid.org/0000-0001-8655-8272","contributorId":1979,"corporation":false,"usgs":true,"family":"Allen","given":"Craig","email":"allencr@usgs.gov","middleInitial":"R.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":673766,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Detweiler, Carrick","contributorId":187432,"corporation":false,"usgs":false,"family":"Detweiler","given":"Carrick","email":"","affiliations":[],"preferred":false,"id":680401,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Higgins, James","contributorId":187433,"corporation":false,"usgs":false,"family":"Higgins","given":"James","email":"","affiliations":[],"preferred":false,"id":680402,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Laney, Christian","contributorId":187434,"corporation":false,"usgs":false,"family":"Laney","given":"Christian","email":"","affiliations":[],"preferred":false,"id":680403,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Elbaum, Sebastian","contributorId":187435,"corporation":false,"usgs":false,"family":"Elbaum","given":"Sebastian","email":"","affiliations":[],"preferred":false,"id":680404,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}} ,{"id":70184321,"text":"70184321 - 2016 - Synchrony of Piping Plover breeding populations in the U.S. Northern Great Plains","interactions":[],"lastModifiedDate":"2017-03-07T16:01:37","indexId":"70184321","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1318,"text":"Condor","active":true,"publicationSubtype":{"id":10}},"title":"Synchrony of Piping Plover breeding populations in the U.S. Northern Great Plains","docAbstract":"Local populations that fluctuate synchronously are at a greater risk of extinction than those that do not. The closer the geographic proximity of populations, the more prone they are to synchronizing. Shorebird species select habitat broadly, and many breed across regions with diverse nesting habitat types. Under these conditions, nearby populations may experience conditions sufficiently different to prevent population synchrony, despite dispersal. In the U.S. Northern Great Plains, the Piping Plover (Charadrius melodus), federally listed as Threatened, is a migratory shorebird species that nests on the shorelines of rivers, reservoirs, and alkaline lakes. We assessed the degree to which local plover breeding population abundances were correlated (population synchrony), changed over time (population stability), and were influenced by environmental factors such as available habitat, precipitation, and within-season reservoir level rise. We found that the abundances of breeding populations nesting in riverine and reservoir habitats were the most synchronous, while populations nesting in alkaline lake habitats exhibited the greatest stability. Changes in local breeding population abundances were not explained by a single factor across habitat types. However, the abundances of local populations nesting in alkaline lake and river shoreline habitats were positively correlated with changes in nesting habitat availability. Our results suggest that dispersal among populations nesting in either river or reservoir and alkaline lake shoreline habitat may have an overall stabilizing effect on the persistence of the Great Plains Piping Plover metapopulation.
","language":"English","publisher":"American Ornithological Society","doi":"10.1650/CONDOR-15-195.1","usgsCitation":"Roche, E.A., Shaffer, T.L., Dovichin, C.M., Sherfy, M.H., Anteau, M.J., and Wiltermuth, M.T., 2016, Synchrony of Piping Plover breeding populations in the U.S. Northern Great Plains: Condor, v. 118, no. 3, p. 558-570, https://doi.org/10.1650/CONDOR-15-195.1.","productDescription":"13 p.","startPage":"558","endPage":"570","ipdsId":"IP-070511","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":482074,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1650/condor-15-195.1","text":"Publisher Index Page"},{"id":336977,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"118","issue":"3","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58bfd4f4e4b014cc3a3ba4bd","contributors":{"authors":[{"text":"Roche, Erin A. eroche@usgs.gov","contributorId":5558,"corporation":false,"usgs":true,"family":"Roche","given":"Erin","email":"eroche@usgs.gov","middleInitial":"A.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681001,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Shaffer, Terry L. 0000-0001-6950-8951 tshaffer@usgs.gov","orcid":"https://orcid.org/0000-0001-6950-8951","contributorId":3192,"corporation":false,"usgs":true,"family":"Shaffer","given":"Terry","email":"tshaffer@usgs.gov","middleInitial":"L.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681002,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dovichin, Colin M. 0000-0002-9325-5779 cdovichin@usgs.gov","orcid":"https://orcid.org/0000-0002-9325-5779","contributorId":4505,"corporation":false,"usgs":true,"family":"Dovichin","given":"Colin","email":"cdovichin@usgs.gov","middleInitial":"M.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681003,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sherfy, Mark H. 0000-0003-3016-4105 msherfy@usgs.gov","orcid":"https://orcid.org/0000-0003-3016-4105","contributorId":125,"corporation":false,"usgs":true,"family":"Sherfy","given":"Mark","email":"msherfy@usgs.gov","middleInitial":"H.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681004,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Anteau, Michael J. 0000-0002-5173-5870 manteau@usgs.gov","orcid":"https://orcid.org/0000-0002-5173-5870","contributorId":3427,"corporation":false,"usgs":true,"family":"Anteau","given":"Michael","email":"manteau@usgs.gov","middleInitial":"J.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":681005,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Wiltermuth, Mark T. 0000-0002-8871-2816 mwiltermuth@usgs.gov","orcid":"https://orcid.org/0000-0002-8871-2816","contributorId":708,"corporation":false,"usgs":true,"family":"Wiltermuth","given":"Mark","email":"mwiltermuth@usgs.gov","middleInitial":"T.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true},{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":681006,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}} ,{"id":70185006,"text":"70185006 - 2016 - Damage and recovery assessment of the Philippines' mangroves following Super Typhoon Haiyan","interactions":[],"lastModifiedDate":"2017-05-31T16:05:49","indexId":"70185006","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2676,"text":"Marine Pollution Bulletin","active":true,"publicationSubtype":{"id":10}},"title":"Damage and recovery assessment of the Philippines' mangroves following Super Typhoon Haiyan","docAbstract":"We quantified mangrove disturbance resulting from Super Typhoon Haiyan using a remote sensing approach. Mangrove areas were mapped prior to Haiyan using 30 m Landsat imagery and a supervised decision-tree classification. A time sequence of 250 m eMODIS data was used to monitor mangrove condition prior to, and following, Haiyan. Based on differences in eMODIS NDVI observations before and after the storm, we classified mangrove into three damage level categories: minimal, moderate, or severe. Mangrove damage in terms of extent and severity was greatest where Haiyan first made landfall on Eastern Samar and Western Samar provinces and lessened westward corresponding with decreasing storm intensity as Haiyan tracked from east to west across the Visayas region of the Philippines. However, within 18 months following Haiyan, mangrove areas classified as severely, moderately, and minimally damaged decreased by 90%, 81%, and 57%, respectively, indicating mangroves resilience to powerful typhoons.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.marpolbul.2016.06.080","usgsCitation":"Long, J., Giri, C., Primavera, J., and Trivedi, M., 2016, Damage and recovery assessment of the Philippines' mangroves following Super Typhoon Haiyan: Marine Pollution Bulletin, v. 109, no. 2, p. 734-743, https://doi.org/10.1016/j.marpolbul.2016.06.080.","productDescription":"10 p.","startPage":"734","endPage":"743","ipdsId":"IP-059352","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":337442,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Philippines","volume":"109","issue":"2","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58c7afa2e4b0849ce9795eaa","contributors":{"authors":[{"text":"Long, Jordan 0000-0002-4814-464X jlong@usgs.gov","orcid":"https://orcid.org/0000-0002-4814-464X","contributorId":3609,"corporation":false,"usgs":true,"family":"Long","given":"Jordan","email":"jlong@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":683914,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Giri, Chandra cgiri@usgs.gov","contributorId":189128,"corporation":false,"usgs":true,"family":"Giri","given":"Chandra","email":"cgiri@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":683915,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Primavera, Jurgene H.","contributorId":56151,"corporation":false,"usgs":true,"family":"Primavera","given":"Jurgene H.","affiliations":[],"preferred":false,"id":683916,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Trivedi, Mandar","contributorId":189130,"corporation":false,"usgs":false,"family":"Trivedi","given":"Mandar","email":"","affiliations":[],"preferred":false,"id":683917,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70184325,"text":"70184325 - 2016 - Structured decision making for managing pneumonia epizootics in bighorn sheep","interactions":[],"lastModifiedDate":"2017-03-07T15:53:54","indexId":"70184325","displayToPublicDate":"2016-08-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2508,"text":"Journal of Wildlife Management","active":true,"publicationSubtype":{"id":10}},"title":"Structured decision making for managing pneumonia epizootics in bighorn sheep","docAbstract":"Good decision-making is essential to conserving wildlife populations. Although there may be multiple ways to address a problem, perfect solutions rarely exist. Managers are therefore tasked with identifying decisions that will best achieve desired outcomes. Structured decision making (SDM) is a method of decision analysis used to identify the most effective, efficient, and realistic decisions while accounting for values and priorities of the decision maker. The stepwise process includes identifying the management problem, defining objectives for solving the problem, developing alternative approaches to achieve the objectives, and formally evaluating which alternative is most likely to accomplish the objectives. The SDM process can be more effective than informal decision-making because it provides a transparent way to quantitatively evaluate decisions for addressing multiple management objectives while incorporating science, uncertainty, and risk tolerance. To illustrate the application of this process to a management need, we present an SDM-based decision tool developed to identify optimal decisions for proactively managing risk of pneumonia epizootics in bighorn sheep (Ovis canadensis) in Montana. Pneumonia epizootics are a major challenge for managers due to long-term impacts to herds, epistemic uncertainty in timing and location of future epizootics, and consequent difficulty knowing how or when to manage risk. The decision tool facilitates analysis of alternative decisions for how to manage herds based on predictions from a risk model, herd-specific objectives, and predicted costs and benefits of each alternative. Decision analyses for 2 example herds revealed that meeting management objectives necessitates specific approaches unique to each herd. The analyses showed how and under what circumstances the alternatives are optimal compared to other approaches and current management. Managers can be confident that these decisions are effective, efficient, and realistic because they explicitly account for important considerations managers implicitly weigh when making decisions, including competing management objectives, uncertainty in potential outcomes, and risk tolerance.
","language":"English","publisher":"Wiley","doi":"10.1002/jwmg.21088","usgsCitation":"Sells, S.N., Mitchell, M.S., Edwards, V.L., Gude, J., and Anderson, N.J., 2016, Structured decision making for managing pneumonia epizootics in bighorn sheep: Journal of Wildlife Management, v. 80, no. 6, p. 957-969, https://doi.org/10.1002/jwmg.21088.","productDescription":"13 p.","startPage":"957","endPage":"969","ipdsId":"IP-064077","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":336971,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"80","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-05-18","publicationStatus":"PW","scienceBaseUri":"58bfd4f3e4b014cc3a3ba4af","contributors":{"authors":[{"text":"Sells, Sarah N.","contributorId":171706,"corporation":false,"usgs":false,"family":"Sells","given":"Sarah","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":681074,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mitchell, Michael S. 0000-0002-0773-6905 mmitchel@usgs.gov","orcid":"https://orcid.org/0000-0002-0773-6905","contributorId":3716,"corporation":false,"usgs":true,"family":"Mitchell","given":"Michael","email":"mmitchel@usgs.gov","middleInitial":"S.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":681010,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Edwards, Victoria L.","contributorId":90149,"corporation":false,"usgs":true,"family":"Edwards","given":"Victoria","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":681075,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Gude, Justin A.","contributorId":95780,"corporation":false,"usgs":true,"family":"Gude","given":"Justin A.","affiliations":[],"preferred":false,"id":681076,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Anderson, Neil J.","contributorId":85870,"corporation":false,"usgs":true,"family":"Anderson","given":"Neil","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":681077,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}} ]}