{"pageNumber":"123","pageRowStart":"3050","pageSize":"25","recordCount":10457,"records":[{"id":70179387,"text":"70179387 - 2016 - A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.","interactions":[],"lastModifiedDate":"2016-12-30T10:49:18","indexId":"70179387","displayToPublicDate":"2016-07-01T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1988,"text":"Infection, Genetics and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.","docAbstract":"H9N2 influenza A viruses are on the list of potentially pandemic subtypes. Therefore, it is important to understand how genomic reassortment and genetic polymorphisms affect phenotypes of H9N2 viruses circulating in the wild bird reservoir. A comparative genetic analysis of North American H9N2 isolates of wild bird origin identified a naturally occurring reassortant virus containing gene segments derived from both North American and Eurasian lineage ancestors. The PB2 segment of this virus encodes 10 amino acid changes that distinguish it from other H9 strains circulating in North America. G590S, one of the 10 amino acid substitutions observed, was present in ~ 12% of H9 viruses worldwide. This mutation combined with R591 has been reported as a marker of pathogenicity for human pandemic 2009 H1N1 viruses. Screening by polymerase reporter assay of all the natural polymorphisms at these two positions identified G590/K591 and S590/K591 as the most active, with the highest polymerase activity recorded for the SK polymorphism. Rescued viruses containing these two polymorphic combinations replicated more efficiently in MDCK cells and they were the only ones tested that were capable of establishing productive infection in NHBE cells. A global analysis of all PB2 sequences identified the K591 signature in six viral HA/NA subtypes isolated from several hosts in seven geographic locations. Interestingly, introducing the K591 mutation into the PB2 of a human-adapted H3N2 virus did not affect its polymerase activity. Our findings demonstrate that a single point mutation in the PB2 of a low pathogenic H9N2 isolate could have a significant effect on viral phenotype and increase its propensity to infect mammals. However, this effect is not universal, warranting caution in interpreting point mutations without considering protein sequence context.","language":"English","publisher":"Elsevier ","doi":"10.1016/j.meegid.2016.04.011","usgsCitation":"Hussein, I.T., Ma, E.J., Meixell, B.W., Hill, N., Lindberg, M.S., Albrecht, R.A., Bahl, J., and Runstadler, J.A., 2016, A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.: Infection, Genetics and Evolution, v. 41, p. 279-288, https://doi.org/10.1016/j.meegid.2016.04.011.","productDescription":"10 p.","startPage":"279","endPage":"288","ipdsId":"IP-071158","costCenters":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"links":[{"id":470788,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://hdl.handle.net/1721.1/133904","text":"External Repository"},{"id":332680,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"41","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"586781f8e4b0cd2dabe7c71b","contributors":{"authors":[{"text":"Hussein, Islam T.M.","contributorId":177787,"corporation":false,"usgs":false,"family":"Hussein","given":"Islam","email":"","middleInitial":"T.M.","affiliations":[],"preferred":false,"id":657049,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ma, Eric J.","contributorId":177788,"corporation":false,"usgs":false,"family":"Ma","given":"Eric","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":657050,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Meixell, Brandt W. 0000-0002-6738-0349 bmeixell@usgs.gov","orcid":"https://orcid.org/0000-0002-6738-0349","contributorId":138716,"corporation":false,"usgs":true,"family":"Meixell","given":"Brandt","email":"bmeixell@usgs.gov","middleInitial":"W.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":657020,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hill, Nichola J.","contributorId":30342,"corporation":false,"usgs":true,"family":"Hill","given":"Nichola J.","affiliations":[],"preferred":false,"id":657051,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lindberg, Mark S.","contributorId":63292,"corporation":false,"usgs":false,"family":"Lindberg","given":"Mark","email":"","middleInitial":"S.","affiliations":[{"id":7211,"text":"University of Alaska, Fairbanks","active":true,"usgs":false}],"preferred":false,"id":657052,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Albrecht, Randy A.","contributorId":177789,"corporation":false,"usgs":false,"family":"Albrecht","given":"Randy","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":657053,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Bahl, Justin","contributorId":171803,"corporation":false,"usgs":false,"family":"Bahl","given":"Justin","affiliations":[{"id":26950,"text":"University of Texas School of Public Health, 1200 Pressler Street, Houston, TX 77030, USA","active":true,"usgs":false}],"preferred":false,"id":657054,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Runstadler, Jonathan A.","contributorId":24706,"corporation":false,"usgs":false,"family":"Runstadler","given":"Jonathan","email":"","middleInitial":"A.","affiliations":[{"id":12444,"text":"Massachusetts Institute of Technology","active":true,"usgs":false}],"preferred":false,"id":657055,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70174225,"text":"70174225 - 2016 - Use of multiple sequencing technologies to produce a high-quality genome of the fungus <i>Pseudogymnoascus destructans</i>, the causative agent of bat White-Nose syndrome","interactions":[],"lastModifiedDate":"2016-07-01T12:59:25","indexId":"70174225","displayToPublicDate":"2016-06-30T13:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5099,"text":"Genome Announcements","active":true,"publicationSubtype":{"id":10}},"title":"Use of multiple sequencing technologies to produce a high-quality genome of the fungus <i>Pseudogymnoascus destructans</i>, the causative agent of bat White-Nose syndrome","docAbstract":"<p>White-Nose syndrome has recently emerged as one of the most devastating wildlife diseases recorded, causing widespread mortality in numerous bat species throughout eastern North America. Here, we present an improvised reference genome of the fungal pathogen&nbsp;<i>Pseudogymnoascus destructans</i> for use in comparative genomic studies.</p>","language":"English","publisher":"American Society for Microbiology","doi":"10.1128/genomeA.00445-16","usgsCitation":"Drees, K., Palmer, J.M., Sebra, R., Lorch, J.M., Chen, C., Wu, C., Bok, J.W., Keller, N.F., Blehert, D.S., Cuomo, C.A., Linder, D.L., and Foster, J., 2016, Use of multiple sequencing technologies to produce a high-quality genome of the fungus <i>Pseudogymnoascus destructans</i>, the causative agent of bat White-Nose syndrome: Genome Announcements, v. 4, no. 3, e00445-16; 2 p., https://doi.org/10.1128/genomeA.00445-16.","productDescription":"e00445-16; 2 p.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-074832","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":470804,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1128/genomea.00445-16","text":"Publisher Index Page"},{"id":324679,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"4","issue":"3","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5776349ee4b07dd077c829e5","contributors":{"authors":[{"text":"Drees, Kevin P.","contributorId":81759,"corporation":false,"usgs":true,"family":"Drees","given":"Kevin P.","affiliations":[],"preferred":false,"id":641405,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Palmer, Jonathan M.","contributorId":172601,"corporation":false,"usgs":false,"family":"Palmer","given":"Jonathan","email":"","middleInitial":"M.","affiliations":[{"id":27066,"text":"Center for Forest Mycology Research, Northern Research Station, US Forest Service, Madison, Wisconsin, 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Cynthia","contributorId":172603,"corporation":false,"usgs":false,"family":"Chen","given":"Cynthia","email":"","affiliations":[{"id":27068,"text":"Intact Genomics, Saint Louis, Missouri, USAe","active":true,"usgs":false}],"preferred":false,"id":641409,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Wu, ChengCang","contributorId":172604,"corporation":false,"usgs":false,"family":"Wu","given":"ChengCang","email":"","affiliations":[{"id":27068,"text":"Intact Genomics, Saint Louis, Missouri, USAe","active":true,"usgs":false}],"preferred":false,"id":641410,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Bok, Jin Woo","contributorId":172605,"corporation":false,"usgs":false,"family":"Bok","given":"Jin","email":"","middleInitial":"Woo","affiliations":[{"id":27069,"text":"Department of Bacteriology and Department of Medical Microbiology and Immunology, University of Wisconsin, Madison, Wisconsin, USAf","active":true,"usgs":false}],"preferred":false,"id":641411,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Keller, Nancy F.","contributorId":172606,"corporation":false,"usgs":false,"family":"Keller","given":"Nancy","email":"","middleInitial":"F.","affiliations":[{"id":27069,"text":"Department of Bacteriology and Department of Medical Microbiology and Immunology, University of Wisconsin, Madison, Wisconsin, USAf","active":true,"usgs":false}],"preferred":false,"id":641412,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Blehert, David S. 0000-0002-1065-9760 dblehert@usgs.gov","orcid":"https://orcid.org/0000-0002-1065-9760","contributorId":140397,"corporation":false,"usgs":true,"family":"Blehert","given":"David","email":"dblehert@usgs.gov","middleInitial":"S.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":641404,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Cuomo, Christina A.","contributorId":172607,"corporation":false,"usgs":false,"family":"Cuomo","given":"Christina","email":"","middleInitial":"A.","affiliations":[{"id":27070,"text":"Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USAg","active":true,"usgs":false}],"preferred":false,"id":641413,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Linder, Daniel L.","contributorId":127718,"corporation":false,"usgs":false,"family":"Linder","given":"Daniel","email":"","middleInitial":"L.","affiliations":[{"id":6679,"text":"US Forest Service, Rocky Mountain Research Station","active":true,"usgs":false}],"preferred":false,"id":641414,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Foster, Jeffrey T.","contributorId":8744,"corporation":false,"usgs":true,"family":"Foster","given":"Jeffrey T.","affiliations":[],"preferred":false,"id":641415,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}}
,{"id":70170070,"text":"70170070 - 2016 - Age- and season-specific variation in local and long-distance movement behavior of golden eagles","interactions":[],"lastModifiedDate":"2017-11-22T17:20:52","indexId":"70170070","displayToPublicDate":"2016-06-29T16:15:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1595,"text":"European Journal of Wildlife Research","active":true,"publicationSubtype":{"id":10}},"title":"Age- and season-specific variation in local and long-distance movement behavior of golden eagles","docAbstract":"<p>Animal movements can determine the population dynamics of wildlife. We used telemetry data to provide insight into the causes and consequences of local and long-distance movements of multiple age classes of conservation-reliant golden eagles (<i>Aquila chrysaetos)</i><span>&nbsp;in the foothills and mountains near Tehachapi, California. We estimated size and habitat-related correlates of 324 monthly 95&nbsp;% home ranges and 317 monthly 50&nbsp;% core areas for 25 birds moving locally over 2.5&nbsp;years. We also calculated daily, hourly, and total distances traveled for the five of these birds that engaged in long-distance movements. Mean (&plusmn;SD) monthly home-range size was 253.6&thinsp;&plusmn;&thinsp;429.4&nbsp;km</span><sup>2</sup><span>&nbsp;and core-area size was 26.4&thinsp;&plusmn;&thinsp;49.7&nbsp;km</span><sup>2</sup>. Consistent with expectations, space used by pre-adults increased with age and was season-dependent but, unexpectedly, was not sex-dependent. For all ages and sexes, home ranges and core areas were dominated by both forest &amp; woodland and shrubland &amp; grassland habitat types. When moving long distances, eagles traveled up to 1588.4&nbsp;km (1-way) in a season at highly variable speeds (63.7&thinsp;&plusmn;&thinsp;69.0&nbsp;km/day and 5.2&thinsp;&plusmn;&thinsp;10.4&nbsp;km/h) that were dependent on time of day. Patterns of long-distance movements by eagles were determined by age, yet these movements had characteristics of more than one previously described movement category (migration, dispersal, etc.). Our results provide a context for differentiating among types of movement behaviors and their population-level consequences and, thus, have implications for management and conservation of golden eagle populations.</p>\n<p><span>.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s10344-016-1010-4","usgsCitation":"Poessel, S.A., Bloom, P., Braham, M., and Katzner, T., 2016, Age- and season-specific variation in local and long-distance movement behavior of golden eagles: European Journal of Wildlife Research, v. 62, no. 4, p. 377-393, https://doi.org/10.1007/s10344-016-1010-4.","productDescription":"17 p.","startPage":"377","endPage":"393","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-073273","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"links":[{"id":324649,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United 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,{"id":70170970,"text":"70170970 - 2016 - Selection and quality assessment of Landsat data for the North American forest dynamics forest history maps of the US","interactions":[],"lastModifiedDate":"2017-01-17T19:16:04","indexId":"70170970","displayToPublicDate":"2016-06-29T15:45:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2035,"text":"International Journal of Digital Earth","active":true,"publicationSubtype":{"id":10}},"title":"Selection and quality assessment of Landsat data for the North American forest dynamics forest history maps of the US","docAbstract":"<p><span>Using the NASA Earth Exchange platform, the North American Forest Dynamics (NAFD) project mapped forest history wall-to-wall, annually for the contiguous US (1986&ndash;2010) using the Vegetation Change Tracker algorithm. As with any effort to identify real changes in remotely sensed time-series, data gaps, shifts in seasonality, misregistration, inconsistent radiometry and cloud contamination can be sources of error. We discuss the NAFD image selection and processing stream (NISPS) that was designed to minimize these sources of error. The NISPS image quality assessments highlighted issues with the Landsat archive and metadata including inadequate georegistration, unreliability of the pre-2009 L5 cloud cover assessments algorithm, missing growing-season imagery and paucity of clear views. Assessment maps of Landsat 5&ndash;7 image quantities and qualities are presented that offer novel perspectives on the growing-season archive considered for this study. Over 150,000+ Landsat images were considered for the NAFD project. Optimally, one high quality cloud-free image in each year or a total of 12,152 images would be used. However, to accommodate data gaps and cloud/shadow contamination 23,338 images were needed. In 220 specific path-row image years no acceptable images were found resulting in data gaps in the annual national map products.</span></p>","language":"English","publisher":"Taylor and Francis","doi":"10.1080/17538947.2016.1158876","usgsCitation":"Schleeweis, K., Goward, S.N., Huang, C., Dwyer, J.L., Dungan, J.L., Lindsey, M.A., Michaelis, A., Rishmawi, K., and Masek, J.G., 2016, Selection and quality assessment of Landsat data for the North American forest dynamics forest history maps of the US: International Journal of Digital Earth, v. 9, no. 10, p. 963-980, https://doi.org/10.1080/17538947.2016.1158876.","productDescription":"18 p.","startPage":"963","endPage":"980","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-073476","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":324639,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"9","issue":"10","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-20","publicationStatus":"PW","scienceBaseUri":"5774e34fe4b07dd077c5fcf9","contributors":{"authors":[{"text":"Schleeweis, Karen","contributorId":169308,"corporation":false,"usgs":false,"family":"Schleeweis","given":"Karen","email":"","affiliations":[{"id":6679,"text":"US Forest Service, Rocky Mountain Research Station","active":true,"usgs":false}],"preferred":false,"id":629277,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Goward, Samuel N.","contributorId":44459,"corporation":false,"usgs":true,"family":"Goward","given":"Samuel","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":629278,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Huang, Chengquan","contributorId":25378,"corporation":false,"usgs":true,"family":"Huang","given":"Chengquan","affiliations":[],"preferred":false,"id":629279,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Dwyer, John L. 0000-0002-8281-0896 dwyer@usgs.gov","orcid":"https://orcid.org/0000-0002-8281-0896","contributorId":3481,"corporation":false,"usgs":true,"family":"Dwyer","given":"John","email":"dwyer@usgs.gov","middleInitial":"L.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":629276,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dungan, Jennifer L.","contributorId":172579,"corporation":false,"usgs":false,"family":"Dungan","given":"Jennifer","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":641329,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Lindsey, Mary A.","contributorId":169309,"corporation":false,"usgs":false,"family":"Lindsey","given":"Mary","email":"","middleInitial":"A.","affiliations":[{"id":25467,"text":"Climate Program Office, NOAA","active":true,"usgs":false}],"preferred":false,"id":629280,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Michaelis, Andrew","contributorId":169311,"corporation":false,"usgs":false,"family":"Michaelis","given":"Andrew","email":"","affiliations":[{"id":25468,"text":"University Corporation Monterey Bay / NASA Ames Research Center","active":true,"usgs":false}],"preferred":false,"id":629282,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Rishmawi, Khaldoun","contributorId":169310,"corporation":false,"usgs":false,"family":"Rishmawi","given":"Khaldoun","email":"","affiliations":[{"id":7083,"text":"University of Maryland","active":true,"usgs":false}],"preferred":false,"id":629281,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Masek, Jeffery G.","contributorId":87438,"corporation":false,"usgs":true,"family":"Masek","given":"Jeffery","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":629283,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70169350,"text":"70169350 - 2016 - Prospective earthquake forecasts at the Himalayan Front after the 25 April 2015 M 7.8 Gorkha Mainshock","interactions":[],"lastModifiedDate":"2016-10-05T11:47:44","indexId":"70169350","displayToPublicDate":"2016-06-29T14:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3372,"text":"Seismological Research Letters","onlineIssn":"1938-2057","printIssn":"0895-0695","active":true,"publicationSubtype":{"id":10}},"title":"Prospective earthquake forecasts at the Himalayan Front after the 25 April 2015 M 7.8 Gorkha Mainshock","docAbstract":"<p><span>When a major earthquake strikes, the resulting devastation can be compounded or even exceeded by the subsequent cascade of triggered seismicity. As the Nepalese recover from the 25 April 2015 shock, knowledge of what comes next is essential. We calculate the redistribution of crustal stresses and implied earthquake probabilities for different periods, from daily to 30 years into the future. An initial forecast was completed before an&nbsp;</span><i>M</i><span>&nbsp;7.3 earthquake struck on 12 May 2015 that enables a preliminary assessment; postforecast seismicity has so far occurred within a zone of fivefold probability gain. Evaluation of the forecast performance, using two months of seismic data, reveals that stress‐based approaches present improved skill in higher‐magnitude triggered seismicity. Our results suggest that considering the total stress field, rather than only the coseismic one, improves the spatial performance of the model based on the estimation of a wide range of potential triggered faults following a mainshock.</span></p>","language":"English","publisher":"Seismological Society of America","doi":"10.1785/0220150195","usgsCitation":"Segou, M., and Parsons, T.E., 2016, Prospective earthquake forecasts at the Himalayan Front after the 25 April 2015 M 7.8 Gorkha Mainshock: Seismological Research Letters, v. 87, no. 4, p. 816-825, https://doi.org/10.1785/0220150195.","productDescription":"10 p.","startPage":"816","endPage":"825","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-065687","costCenters":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":470810,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://nora.nerc.ac.uk/id/eprint/514329/1/SegouParsons-SRL-2016-NORA-all.pdf","text":"External Repository"},{"id":324624,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"87","issue":"4","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-08","publicationStatus":"PW","scienceBaseUri":"5774e33fe4b07dd077c5fc6b","contributors":{"authors":[{"text":"Segou, Margaret","contributorId":140800,"corporation":false,"usgs":false,"family":"Segou","given":"Margaret","email":"","affiliations":[{"id":13572,"text":"Geoscience Azur","active":true,"usgs":false}],"preferred":false,"id":623869,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Parsons, Thomas E. 0000-0002-0582-4338 tparsons@usgs.gov","orcid":"https://orcid.org/0000-0002-0582-4338","contributorId":2314,"corporation":false,"usgs":true,"family":"Parsons","given":"Thomas","email":"tparsons@usgs.gov","middleInitial":"E.","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":623868,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70174210,"text":"70174210 - 2016 - Year-round monitoring of contaminants in Neal and Rogers Creeks, Hood River Basin, Oregon, 2011-12, and assessment of risks to salmonids","interactions":[],"lastModifiedDate":"2016-06-29T15:30:05","indexId":"70174210","displayToPublicDate":"2016-06-29T10:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"Year-round monitoring of contaminants in Neal and Rogers Creeks, Hood River Basin, Oregon, 2011-12, and assessment of risks to salmonids","docAbstract":"<p>Pesticide presence in streams is a potential threat to Endangered Species Act listed salmonids in the Hood River basin, Oregon, a primarily forested and agricultural basin. Two types of passive samplers, polar organic chemical integrative samplers (POCIS) and semipermeable membrane devices (SPMDs), were simultaneously deployed at four sites in the basin during Mar. 2011&ndash;Mar. 2012 to measure the presence of pesticides, polybrominated diphenyl ethers (PBDEs), and polychlorinated biphenyls (PCBs). The year-round use of passive samplers is a novel approach and offers several new insights. Currently used pesticides and legacy contaminants, including many chlorinated pesticides and PBDEs, were present throughout the year in the basin&rsquo;s streams. PCBs were not detected. Time-weighted average water concentrations for the 2-month deployment periods were estimated from concentrations of chemicals measured in the passive samplers. Currently used pesticide concentrations peaked during spring and were detected beyond their seasons of expected use. Summed concentrations of legacy contaminants in Neal Creek were highest during July&ndash;Sept., the period with the lowest streamflows. Endosulfan was the only pesticide detected in passive samplers at concentrations exceeding Oregon or U.S. Environmental Protection Agency water-quality thresholds. A Sensitive Pesticide Toxicity Index (SPTI) was used to estimate the relative acute potential toxicity among sample mixtures. The acute potential toxicity of the detected mixtures was likely greater for invertebrates than for fish and for all samples in Neal Creek compared to Rogers Creek, but the indices appear to be low overall (&lt;0.1). Endosulfans and pyrethroid insecticides were the largest contributors to the SPTIs for both sites. SPTIs of some discrete (grab) samples from the basin that were used for comparison exceeded 0.1 when some insecticides (azinphos methyl, chlorpyrifos, malathion) were detected at concentrations near or exceeding acute water-quality thresholds. Early life stages and adults of several sensitive fish species, including salmonids, are present in surface waters of the basin throughout the year, including during periods of peak estimated potential toxicity. Based on these data, direct toxicity to salmonids from in-stream pesticide exposure is unlikely, but indirect impacts (reduced fitness due to cumulative exposures or negative impacts to invertebrate prey populations) are unknown.</p>","language":"English","publisher":"Public Library of Science","doi":"10.1371/journal.pone.0158175","usgsCitation":"Temple, W.B., Morace, J.L., Nilsen, E.B., Alvarez, D., and Masterson, K., 2016, Year-round monitoring of contaminants in Neal and Rogers Creeks, Hood River Basin, Oregon, 2011-12, and assessment of risks to salmonids: PLoS ONE, v. 11, no. 6, 32 p., https://doi.org/10.1371/journal.pone.0158175.","productDescription":"32 p.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-070114","costCenters":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"links":[{"id":470814,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0158175","text":"Publisher Index Page"},{"id":324651,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Oregon","otherGeospatial":"Green Point Creek, Hood River basin, Neal Creek, Rogers Creek, West Fork Hood River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -121,\n              46\n            ],\n            [\n              -121,\n              45\n            ],\n            [\n              -122,\n              45\n            ],\n            [\n              -122,\n              46\n            ],\n            [\n              -121,\n              46\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"11","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-27","publicationStatus":"PW","scienceBaseUri":"5774e35ce4b07dd077c5fd60","contributors":{"authors":[{"text":"Temple, Whitney B. wbtemple@usgs.gov","contributorId":4488,"corporation":false,"usgs":true,"family":"Temple","given":"Whitney","email":"wbtemple@usgs.gov","middleInitial":"B.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":641307,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Morace, Jennifer L. 0000-0002-8132-4044 jlmorace@usgs.gov","orcid":"https://orcid.org/0000-0002-8132-4044","contributorId":945,"corporation":false,"usgs":true,"family":"Morace","given":"Jennifer","email":"jlmorace@usgs.gov","middleInitial":"L.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":641308,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Nilsen, Elena B. 0000-0002-0104-6321 enilsen@usgs.gov","orcid":"https://orcid.org/0000-0002-0104-6321","contributorId":923,"corporation":false,"usgs":true,"family":"Nilsen","given":"Elena","email":"enilsen@usgs.gov","middleInitial":"B.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":641309,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Alvarez, David 0000-0002-6918-2709 dalvarez@usgs.gov","orcid":"https://orcid.org/0000-0002-6918-2709","contributorId":150499,"corporation":false,"usgs":true,"family":"Alvarez","given":"David","email":"dalvarez@usgs.gov","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":641310,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Masterson, Kevin","contributorId":172573,"corporation":false,"usgs":false,"family":"Masterson","given":"Kevin","email":"","affiliations":[{"id":27064,"text":"Oregon Department of Environmental Quality","active":true,"usgs":false}],"preferred":false,"id":641311,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70182793,"text":"70182793 - 2016 - Effects of pulse and press drying disturbance on benthic stream communities","interactions":[],"lastModifiedDate":"2017-03-01T11:33:25","indexId":"70182793","displayToPublicDate":"2016-06-29T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1699,"text":"Freshwater Science","active":true,"publicationSubtype":{"id":10}},"title":"Effects of pulse and press drying disturbance on benthic stream communities","docAbstract":"<p><span>Natural disturbance is an integral component of most ecosystems and occurs in 3 different forms: pulse, press, and ramp. In lotic ecosystems, seasonal drought is a major form of disturbance, particularly in intermittent headwater streams, which often are reduced to pools that serve as refuges for biota. We used simulated intermittent stream pools to compare the effects of control, pulse, and press drying on growth and survival in 3 fish species (</span><i>Lepomis megalotis</i><span>, </span><i>Campostoma anomalum</i><span>, and </span><i>Etheostoma spectabile</i><span>) commonly found together in drought-prone streams in the Ozark Highlands, USA. We also compared effects on benthic community structure, including periphyton and chironomid density and sediment in deep (permanently watered) and shallow (intermittently dewatered) habitat. Only one species, </span><i>L. megalotis</i><span>, showed a significant reduction in length and mass growth in press drying compared with control treatments. Drying and type of drying had no effect on survival of any fish species. Drying and type of drying had strong overall effects on periphyton growth in shallow habitats, where ash-free dry mass decreased and the autotrophic index (the ratio of chlorophyll </span><i>a</i><span> to total biomass) increased significantly in drying relative to control and in press relative to pulse treatments. Drying negatively affected sediment accumulation in shallow habitat and chironomid density in deep habitat. Drying in intermittent streams has species-dependent effects on fish growth and benthic structure, and pulse and press drying differ in their effects on periphyton in these systems. These effects may have important consequences in seasonally drying streams as anthropogenic influence on stream drying increases.</span></p>","language":"English","publisher":"University of Chicago Press","doi":"10.1086/687843","usgsCitation":"Lynch, D.T., and Magoulick, D.D., 2016, Effects of pulse and press drying disturbance on benthic stream communities: Freshwater Science, v. 35, no. 3, p. 998-1009, https://doi.org/10.1086/687843.","productDescription":"12 p. ","startPage":"998","endPage":"1009","ipdsId":"IP-059893","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":336737,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"35","issue":"3","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"58b7eba8e4b01ccd5500bb1d","contributors":{"authors":[{"text":"Lynch, Dustin T.","contributorId":145645,"corporation":false,"usgs":false,"family":"Lynch","given":"Dustin","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":680399,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Magoulick, Daniel D. 0000-0001-9665-5957 danmag@usgs.gov","orcid":"https://orcid.org/0000-0001-9665-5957","contributorId":2513,"corporation":false,"usgs":true,"family":"Magoulick","given":"Daniel","email":"danmag@usgs.gov","middleInitial":"D.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":673765,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70174228,"text":"70174228 - 2016 - Genetic reconstruction of a bullfrog invasion to elucidate vectors of introduction and secondary spread","interactions":[],"lastModifiedDate":"2016-08-04T15:20:25","indexId":"70174228","displayToPublicDate":"2016-06-28T14:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Genetic reconstruction of a bullfrog invasion to elucidate vectors of introduction and secondary spread","docAbstract":"<p><span>Reconstructing historical colonization pathways of an invasive species is critical for uncovering factors that determine invasion success and for designing management strategies. The American bullfrog (</span><i>Lithobates catesbeianus</i><span>) is endemic to eastern North America, but now has a global distribution and is considered to be one of the worst invaders in the world. In Montana, several introduced populations have been reported, but little is known of their sources and vectors of introduction and secondary spread. We evaluated the genetic composition of introduced populations at local (Yellowstone River floodplain) and regional (Montana and Wyoming) scales in contrast to native range populations. Our objectives were to (1) estimate the number of introductions, (2) identify probable native sources, (3) evaluate genetic variation relative to sources, and (4) characterize properties of local- and regional-scale spread. We sequenced 937&nbsp;bp of the mitochondrial cytochrome&nbsp;</span><i>b</i><span>&nbsp;locus in 395 tadpoles collected along 100&nbsp;km of the Yellowstone River, from three additional sites in MT and a proximate site in WY. Pairwise &Phi;</span><span>ST</span><span>&nbsp;revealed high divergence among nonnative populations, suggesting at least four independent introductions into MT from diverse sources. Three cyt&nbsp;</span><i>b</i><span>&nbsp;haplotypes were identical to native haplotypes distributed across the Midwest and Great Lakes regions, and AMOVA confirmed the western native region as a likely source. While haplotype (</span><i>H</i><span>d</span><span>&nbsp;=&nbsp;0.69) and nucleotide diversity (</span><i>&pi;</i><span>&nbsp;=&nbsp;0.005) were low in introduced bullfrogs, the levels of diversity did not differ significantly from source populations. In the Yellowstone, two identified haplotypes implied few introduction vectors and a significant relationship between genetic and river distance was found. Evidence for multiple invasions and lack of subsequent regional spread emphasizes the importance of enforcing legislation prohibiting bullfrog importation and the need for continuing public education to prevent transport of bullfrogs in MT. More broadly, this study demonstrates how genetic approaches can reveal key properties of a biological invasion to inform management strategies.</span></p>","language":"English","publisher":"John Wiley & Sons","doi":"10.1002/ece3.2278","usgsCitation":"Kamath, P.L., Sepulveda, A.J., and Layhee, M.J., 2016, Genetic reconstruction of a bullfrog invasion to elucidate vectors of introduction and secondary spread: Ecology and Evolution, v. 6, no. 15, p. 5221-5233, https://doi.org/10.1002/ece3.2278.","productDescription":"13 p.","startPage":"5221","endPage":"5233","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-070987","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":470820,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.2278","text":"Publisher Index 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,{"id":70168946,"text":"70168946 - 2016 - High concentrations of manganese and sulfur in deposits on Murray Ridge, Endeavour Crater, Mars","interactions":[],"lastModifiedDate":"2018-11-08T17:09:01","indexId":"70168946","displayToPublicDate":"2016-06-28T12:45:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":738,"text":"American Mineralogist","active":true,"publicationSubtype":{"id":10}},"title":"High concentrations of manganese and sulfur in deposits on Murray Ridge, Endeavour Crater, Mars","docAbstract":"<p><span>Mars Reconnaissance Orbiter HiRISE images and Opportunity rover observations of the ~22 km wide Noachian age Endeavour Crater on Mars show that the rim and surrounding terrains were densely fractured during the impact crater-forming event. Fractures have also propagated upward into the overlying Burns formation sandstones. Opportunity&rsquo;s observations show that the western crater rim segment, called Murray Ridge, is composed of impact breccias with basaltic compositions, as well as occasional fracture-filling calcium sulfate veins. Cook Haven, a gentle depression on Murray Ridge, and the site where Opportunity spent its sixth winter, exposes highly fractured, recessive outcrops that have relatively high concentrations of S and Cl, consistent with modest aqueous alteration. Opportunity&rsquo;s rover wheels serendipitously excavated and overturned several small rocks from a Cook Haven fracture zone. Extensive measurement campaigns were conducted on two of them: Pinnacle Island and Stuart Island. These rocks have the highest concentrations of Mn and S measured to date by Opportunity and occur as a relatively bright sulfate-rich coating on basaltic rock, capped by a thin deposit of one or more dark Mn oxide phases intermixed with sulfate minerals. We infer from these unique Pinnacle Island and Stuart Island rock measurements that subsurface precipitation of sulfate-dominated coatings was followed by an interval of partial dissolution and reaction with one or more strong oxidants (e.g., O</span><span>2</span><span>) to produce the Mn oxide mineral(s) intermixed with sulfate-rich salt coatings. In contrast to arid regions on Earth, where Mn oxides are widely incorporated into coatings on surface rocks, our results demonstrate that on Mars the most likely place to deposit and preserve Mn oxides was in fracture zones where migrating fluids intersected surface oxidants, forming precipitates shielded from subsequent physical erosion.</span></p>","language":"English","publisher":"Mineralogical Society of America","doi":"10.2138/am-2016-5599","usgsCitation":"Arvidson, R.E., Squyres, S.W., Morris, R., Knoll, A.H., Gellert, R., Clark, B., Catalano, J.G., Jolliff, B.L., McLennan, S.M., Herkenhoff, K.E., VanBommel, S., Mittelfehldt, D.W., Grotzinger, J., Guinness, E.A., Johnson, J., Bell, J.F., Farrand, W., Stein, N., Fox, V.K., Golombek, M., Hinkle, M.A., Calvin, W.M., and de Souza, P.A., 2016, High concentrations of manganese and sulfur in deposits on Murray Ridge, Endeavour Crater, Mars: American Mineralogist, v. 101, no. 6, p. 1389-1405, https://doi.org/10.2138/am-2016-5599.","productDescription":"17 p.","startPage":"1389","endPage":"1405","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-069984","costCenters":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"links":[{"id":470822,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.2138/am-2016-5599","text":"Publisher Index Page"},{"id":324504,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"101","issue":"6","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-02","publicationStatus":"PW","scienceBaseUri":"577391a5e4b07657d1a88bcc","contributors":{"authors":[{"text":"Arvidson, Raymond E.","contributorId":106626,"corporation":false,"usgs":false,"family":"Arvidson","given":"Raymond","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":623006,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Squyres, Steven W.","contributorId":10537,"corporation":false,"usgs":true,"family":"Squyres","given":"Steven","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":623007,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Morris, Richard V.","contributorId":167513,"corporation":false,"usgs":false,"family":"Morris","given":"Richard V.","affiliations":[{"id":7049,"text":"NASA Goddard Space Flight Center","active":true,"usgs":false}],"preferred":false,"id":623008,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Knoll, Andrew H.","contributorId":167647,"corporation":false,"usgs":false,"family":"Knoll","given":"Andrew","email":"","middleInitial":"H.","affiliations":[{"id":16811,"text":"Harvard University","active":true,"usgs":false}],"preferred":false,"id":623009,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Gellert, Ralf","contributorId":35049,"corporation":false,"usgs":false,"family":"Gellert","given":"Ralf","email":"","affiliations":[{"id":12660,"text":"University of Guelph","active":true,"usgs":false}],"preferred":false,"id":623010,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Clark, Benton C.","contributorId":127516,"corporation":false,"usgs":false,"family":"Clark","given":"Benton C.","affiliations":[{"id":7038,"text":"Space Science Institute, Boulder, Colorado","active":true,"usgs":false}],"preferred":false,"id":623011,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Catalano, Jeffrey G.","contributorId":167648,"corporation":false,"usgs":false,"family":"Catalano","given":"Jeffrey","email":"","middleInitial":"G.","affiliations":[{"id":24730,"text":"Department of Earth and Planetary Sciences, Washington University in St. Louis","active":true,"usgs":false}],"preferred":false,"id":623012,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Jolliff, Bradley L.","contributorId":40040,"corporation":false,"usgs":true,"family":"Jolliff","given":"Bradley","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":623013,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"McLennan, Scott M.","contributorId":95388,"corporation":false,"usgs":true,"family":"McLennan","given":"Scott","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":623014,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Herkenhoff, Kenneth E. 0000-0002-3153-6663 kherkenhoff@usgs.gov","orcid":"https://orcid.org/0000-0002-3153-6663","contributorId":2275,"corporation":false,"usgs":true,"family":"Herkenhoff","given":"Kenneth","email":"kherkenhoff@usgs.gov","middleInitial":"E.","affiliations":[{"id":131,"text":"Astrogeology Science 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P.","affiliations":[],"preferred":false,"id":623017,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Guinness, Edward A.","contributorId":167650,"corporation":false,"usgs":false,"family":"Guinness","given":"Edward","email":"","middleInitial":"A.","affiliations":[{"id":24730,"text":"Department of Earth and Planetary Sciences, Washington University in St. Louis","active":true,"usgs":false}],"preferred":false,"id":623018,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Johnson, Jeffrey R.","contributorId":71688,"corporation":false,"usgs":true,"family":"Johnson","given":"Jeffrey R.","affiliations":[],"preferred":false,"id":623019,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Bell, James F. III","contributorId":12737,"corporation":false,"usgs":true,"family":"Bell","given":"James","suffix":"III","email":"","middleInitial":"F.","affiliations":[],"preferred":false,"id":623020,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Farrand, William H.","contributorId":167514,"corporation":false,"usgs":false,"family":"Farrand","given":"William H.","affiliations":[{"id":24736,"text":"Space Science Institute, Boulder, Colo.","active":true,"usgs":false}],"preferred":false,"id":623021,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Stein, Nathan","contributorId":167651,"corporation":false,"usgs":false,"family":"Stein","given":"Nathan","affiliations":[{"id":24730,"text":"Department of Earth and Planetary Sciences, Washington University in St. Louis","active":true,"usgs":false}],"preferred":false,"id":623022,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Fox, Valerie K.","contributorId":167652,"corporation":false,"usgs":false,"family":"Fox","given":"Valerie","email":"","middleInitial":"K.","affiliations":[{"id":24730,"text":"Department of Earth and Planetary Sciences, Washington University in St. Louis","active":true,"usgs":false}],"preferred":false,"id":623023,"contributorType":{"id":1,"text":"Authors"},"rank":19},{"text":"Golombek, Matthew P.","contributorId":93180,"corporation":false,"usgs":true,"family":"Golombek","given":"Matthew P.","affiliations":[],"preferred":false,"id":623024,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Hinkle, Margaret A. G.","contributorId":167653,"corporation":false,"usgs":false,"family":"Hinkle","given":"Margaret","email":"","middleInitial":"A. G.","affiliations":[{"id":24730,"text":"Department of Earth and Planetary Sciences, Washington University in St. Louis","active":true,"usgs":false}],"preferred":false,"id":623025,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Calvin, Wendy M.","contributorId":93508,"corporation":false,"usgs":true,"family":"Calvin","given":"Wendy","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":623026,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"de Souza, Paulo A. Jr.","contributorId":167654,"corporation":false,"usgs":false,"family":"de Souza","given":"Paulo","suffix":"Jr.","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":623027,"contributorType":{"id":1,"text":"Authors"},"rank":23}]}}
,{"id":70170850,"text":"70170850 - 2016 - Impact of formation water geochemistry and crude oil biodegradation on microbial methanogenesis","interactions":[],"lastModifiedDate":"2016-06-28T11:41:03","indexId":"70170850","displayToPublicDate":"2016-06-28T12:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2958,"text":"Organic Geochemistry","active":true,"publicationSubtype":{"id":10}},"title":"Impact of formation water geochemistry and crude oil biodegradation on microbial methanogenesis","docAbstract":"<p id=\"sp0010\">Converting non-producible crude oil to CH<sub>4</sub>&nbsp;via methanogenic crude oil biodegradation in oil reservoirs could serve as one way to increase our energy profile. Yet, field data supporting the direct relationship between methanogenesis and crude oil biodegradation are sparse. Indicators of methanogenesis, based on the formation water and gas geochemistry (e.g. alkalinity, &delta;<sup>13</sup>C&ndash;CO<sub>2</sub>) were compared with indicators of crude oil biodegradation (e.g. pristane/phytane and&nbsp;<i>n</i>-alkane ratios) from wells in the Wilcox Group of Louisiana to determine if increases in extent of methanogenesis were related to increases in extent of crude oil biodegradation.</p>\n<p id=\"sp0015\">Shallow wells (393&ndash;442&nbsp;m depth) contained highly biodegraded oils associated with low extent of methanogenesis, while the deepest (&gt;&nbsp;1208&nbsp;m) wells contained minimally degraded oils and produced fluids suggesting a low extent of methanogenesis. Mid-depth wells (666&ndash;857&nbsp;m) in the central field had the highest indicators of methanogenesis and contained moderately biodegraded oils. Little correlation existed between extents of crude oil biodegradation and methanogenesis across the whole transect (avg.<i>R</i><sup>2</sup>&nbsp;=&nbsp;0.13). However, when wells with the greatest extent of crude oil biodegradation were eliminated (3 of 6 oilfields), better correlation between extent of methanogenesis and biodegradation (avg.&nbsp;<i>R</i><sup>2</sup>&nbsp;=&nbsp;0.53) was observed. The results suggest that oil quality and salinity impact methanogenic crude oil biodegradation. Reservoirs indicating moderate extent of crude oil biodegradation and high extent of methanogenesis, such as the central field, would be good candidates for attempting to enhance methanogenic crude oil biodegradation as a result of the observations from the study.</p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.orggeochem.2016.05.008","usgsCitation":"Shelton, J., McIntosh, J.C., Warwick, P.D., and McCray, J.E., 2016, Impact of formation water geochemistry and crude oil biodegradation on microbial methanogenesis: Organic Geochemistry, v. 98, p. 105-117, https://doi.org/10.1016/j.orggeochem.2016.05.008.","productDescription":"13 p.","startPage":"105","endPage":"117","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-073458","costCenters":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":470824,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.orggeochem.2016.05.008","text":"Publisher Index Page"},{"id":324501,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"98","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"577391a5e4b07657d1a88bce","contributors":{"authors":[{"text":"Shelton, Jenna L. 0000-0002-1377-0675 jlshelton@usgs.gov","orcid":"https://orcid.org/0000-0002-1377-0675","contributorId":5025,"corporation":false,"usgs":true,"family":"Shelton","given":"Jenna L.","email":"jlshelton@usgs.gov","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":628816,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McIntosh, Jennifer C. 0000-0001-5055-4202","orcid":"https://orcid.org/0000-0001-5055-4202","contributorId":150557,"corporation":false,"usgs":false,"family":"McIntosh","given":"Jennifer","email":"","middleInitial":"C.","affiliations":[{"id":6624,"text":"University of Arizona, Laboratory of Tree-Ring Research","active":true,"usgs":false}],"preferred":false,"id":628817,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Warwick, Peter D. 0000-0002-3152-7783 pwarwick@usgs.gov","orcid":"https://orcid.org/0000-0002-3152-7783","contributorId":762,"corporation":false,"usgs":true,"family":"Warwick","given":"Peter","email":"pwarwick@usgs.gov","middleInitial":"D.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":false,"id":628818,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McCray, John E.","contributorId":139258,"corporation":false,"usgs":false,"family":"McCray","given":"John","email":"","middleInitial":"E.","affiliations":[{"id":6606,"text":"Colorado School of Mines","active":true,"usgs":false}],"preferred":false,"id":628819,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70182791,"text":"70182791 - 2016 - Regional differences in upland forest to developed (urban) land cover conversions in the conterminous U.S., 1973–2011","interactions":[],"lastModifiedDate":"2024-06-17T16:52:26.70865","indexId":"70182791","displayToPublicDate":"2016-06-28T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1689,"text":"Forests","active":true,"publicationSubtype":{"id":10}},"title":"Regional differences in upland forest to developed (urban) land cover conversions in the conterminous U.S., 1973–2011","docAbstract":"<p><span>In this U.S. Geological Survey study of forest land cover across the conterminous U.S. (CONUS), specific proportions and rates of forest conversion to developed (urban) land were assessed on an ecoregional basis. The study period was divided into six time intervals between 1973 and 2011. Forest land cover was the source of 40% or more of the new urban land in 35 of the 84 ecoregions located within the CONUS. In 11 of these ecoregions this threshold exceeded in every time interval. When the percent of change, forest to urban, was compared to the percent of forest in each ecoregion, 58 ecoregions had a greater percent of change and, in six of those, change occurred in every time interval. Annual rates of forest to urban land cover change of 0.2% or higher occurred in 12 ecoregions at least once and in one ecoregion in all intervals. There were three ecoregions where the above conditions were met for nearly every time interval. Even though only a small number of the ecoregions were heavily impacted by forest loss to urban development within the CONUS, the ecosystem services provided by undeveloped forest land cover need to be quantified more completely to better inform future regional land management.</span></p>","language":"English","publisher":"MDPI","doi":"10.3390/f7070132","usgsCitation":"Auch, R.F., Drummond, M.A., Xian, G.Z., Sayler, K., Acevedo, W., and Taylor, J., 2016, Regional differences in upland forest to developed (urban) land cover conversions in the conterminous U.S., 1973–2011: Forests, v. 7, no. 7, 132, 20 p., https://doi.org/10.3390/f7070132.","productDescription":"132, 20 p.","ipdsId":"IP-075036","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":470828,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/f7070132","text":"Publisher Index 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PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-28","publicationStatus":"PW","scienceBaseUri":"58b7eba8e4b01ccd5500bb1f","contributors":{"authors":[{"text":"Auch, Roger F. 0000-0002-5382-5044 auch@usgs.gov","orcid":"https://orcid.org/0000-0002-5382-5044","contributorId":667,"corporation":false,"usgs":true,"family":"Auch","given":"Roger","email":"auch@usgs.gov","middleInitial":"F.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":673761,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Drummond, Mark A. 0000-0001-7420-3503 madrummond@usgs.gov","orcid":"https://orcid.org/0000-0001-7420-3503","contributorId":3053,"corporation":false,"usgs":true,"family":"Drummond","given":"Mark","email":"madrummond@usgs.gov","middleInitial":"A.","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":690371,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Xian, George Z. 0000-0001-5674-2204 xian@usgs.gov","orcid":"https://orcid.org/0000-0001-5674-2204","contributorId":2263,"corporation":false,"usgs":true,"family":"Xian","given":"George","email":"xian@usgs.gov","middleInitial":"Z.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":690372,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sayler, Kristi L. 0000-0003-2514-242X sayler@usgs.gov","orcid":"https://orcid.org/0000-0003-2514-242X","contributorId":2988,"corporation":false,"usgs":true,"family":"Sayler","given":"Kristi","email":"sayler@usgs.gov","middleInitial":"L.","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":690373,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Acevedo, William wacevedo@usgs.gov","contributorId":2689,"corporation":false,"usgs":true,"family":"Acevedo","given":"William","email":"wacevedo@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true},{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":690374,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Taylor, Janis  0000-0002-9418-5215 jltaylor@usgs.gov","orcid":"https://orcid.org/0000-0002-9418-5215","contributorId":3869,"corporation":false,"usgs":true,"family":"Taylor","given":"Janis ","email":"jltaylor@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":false,"id":690375,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70174171,"text":"70174171 - 2016 - Loss of genetic diversity and increased subdivision in an endemic Alpine Stonefly threatened by climate change","interactions":[],"lastModifiedDate":"2016-11-15T13:59:21","indexId":"70174171","displayToPublicDate":"2016-06-28T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"Loss of genetic diversity and increased subdivision in an endemic Alpine Stonefly threatened by climate change","docAbstract":"<p>Much remains unknown about the genetic status and population connectivity of high-elevation and high-latitude freshwater invertebrates, which often persist near snow and ice masses that are disappearing due to climate change. Here we report on the conservation genetics of the meltwater stonefly Lednia tumana (Ricker) of Montana, USA, a cold-water obligate species. We sequenced 1530 bp of mtDNA from 116 L. tumana individuals representing &ldquo;historic&rdquo; (&gt;10 yr old) and 2010 populations. The dominant haplotype was common in both time periods, while the second-most-common haplotype was found only in historic samples, having been lost in the interim. The 2010 populations also showed reduced gene and nucleotide diversity and increased genetic isolation. We found lower genetic diversity in L. tumana compared to two other North American stonefly species, Amphinemura linda (Ricker) and Pteronarcys californica Newport. Our results imply small effective sizes, increased fragmentation, limited gene flow, and loss of genetic variation among contemporary L. tumana populations, which can lead to reduced adaptive capacity and increased extinction risk. This study reinforces concerns that ongoing glacier loss threatens the persistence of L. tumana, and provides baseline data and analysis of how future environmental change could impact populations of similar organisms.</p>","language":"English","publisher":"Public Library of Science","publisherLocation":"San Francisco, CA","doi":"10.1371/journal.pone.0157386","usgsCitation":"Jordan, S., Giersch, J., Muhlfeld, C.C., Hotalling, S., Fanning, L., Tappenbeck, T.H., and Luikart, G., 2016, Loss of genetic diversity and increased subdivision in an endemic Alpine Stonefly threatened by climate change: PLoS ONE, v. 11, no. 6, e0157386; 12 p., https://doi.org/10.1371/journal.pone.0157386.","productDescription":"e0157386; 12 p.","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-069801","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":470827,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index 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Steve","contributorId":168297,"corporation":false,"usgs":false,"family":"Jordan","given":"Steve","email":"","affiliations":[{"id":25242,"text":"Department of Biology, Bucknell University, Lewisburg, Pennsylvania 17837, USA","active":true,"usgs":false}],"preferred":false,"id":641058,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Giersch, J. Joseph 0000-0001-7818-3941 jgiersch@usgs.gov","orcid":"https://orcid.org/0000-0001-7818-3941","contributorId":4022,"corporation":false,"usgs":true,"family":"Giersch","given":"J. Joseph","email":"jgiersch@usgs.gov","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":false,"id":641059,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Muhlfeld, Clint C. 0000-0002-4599-4059 cmuhlfeld@usgs.gov","orcid":"https://orcid.org/0000-0002-4599-4059","contributorId":924,"corporation":false,"usgs":true,"family":"Muhlfeld","given":"Clint","email":"cmuhlfeld@usgs.gov","middleInitial":"C.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":641060,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hotalling, Scott","contributorId":172501,"corporation":false,"usgs":false,"family":"Hotalling","given":"Scott","email":"","affiliations":[{"id":12425,"text":"University of Kentucky","active":true,"usgs":false}],"preferred":false,"id":641061,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Fanning, Liz","contributorId":172502,"corporation":false,"usgs":false,"family":"Fanning","given":"Liz","email":"","affiliations":[{"id":16651,"text":"Bucknell University","active":true,"usgs":false}],"preferred":false,"id":641062,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Tappenbeck, Tyler H.","contributorId":176876,"corporation":false,"usgs":false,"family":"Tappenbeck","given":"Tyler","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":653866,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Luikart, Gordon","contributorId":97409,"corporation":false,"usgs":false,"family":"Luikart","given":"Gordon","affiliations":[{"id":6580,"text":"University of Montana, Flathead Lake Biological Station, Polson, Montana 59860, USA","active":true,"usgs":false}],"preferred":false,"id":641063,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70178788,"text":"70178788 - 2016 - Estimating heterotrophic respiration at large scales: Challenges, approaches, and next steps","interactions":[],"lastModifiedDate":"2016-12-07T17:17:02","indexId":"70178788","displayToPublicDate":"2016-06-27T00:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Estimating heterotrophic respiration at large scales: Challenges, approaches, and next steps","docAbstract":"<p>Heterotrophic respiration (HR), the aerobic and anaerobic processes mineralizing organic matter, is a key carbon flux but one impossible to measure at scales significantly larger than small experimental plots. This impedes our ability to understand carbon and nutrient cycles, benchmark models, or reliably upscale point measurements. Given that a new generation of highly mechanistic, genomic-specific global models is not imminent, we suggest that a useful step to improve this situation would be the development of “Decomposition Functional Types” (DFTs). Analogous to plant functional types (PFTs), DFTs would abstract and capture important differences in HR metabolism and flux dynamics, allowing modelers and experimentalists to efficiently group and vary these characteristics across space and time. We argue that DFTs should be initially informed by top-down expert opinion, but ultimately developed using bottom-up, data-driven analyses, and provide specific examples of potential dependent and independent variables that could be used. We present an example clustering analysis to show how annual HR can be broken into distinct groups associated with global variability in biotic and abiotic factors, and demonstrate that these groups are distinct from (but complementary to) already-existing PFTs. A similar analysis incorporating observational data could form the basis for future DFTs. Finally, we suggest next steps and critical priorities: collection and synthesis of existing data; more in-depth analyses combining open data with rigorous testing of analytical results; using point measurements and realistic forcing variables to constrain process-based models; and planning by the global modeling community for decoupling decomposition from fixed site data. These are all critical steps to build a foundation for DFTs in global models, thus providing the ecological and climate change communities with robust, scalable estimates of HR.</p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.1380","usgsCitation":"Bond-Lamberty, B., Epron, D., Harden, J.W., Harmon, M.E., Hoffman, F., Kumar, J., McGuire, A.D., and Vargas, R., 2016, Estimating heterotrophic respiration at large scales: Challenges, approaches, and next steps: Ecosphere, v. 7, no. 6, Article e01380; 13 p., https://doi.org/10.1002/ecs2.1380.","productDescription":"Article e01380; 13 p.","ipdsId":"IP-070883","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":470841,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecs2.1380","text":"Publisher Index Page"},{"id":331662,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"7","issue":"6","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-27","publicationStatus":"PW","scienceBaseUri":"58492df3e4b06d80b7b093a6","chorus":{"doi":"10.1002/ecs2.1380","url":"http://dx.doi.org/10.1002/ecs2.1380","publisher":"Wiley-Blackwell","authors":"Bond-Lamberty Ben, Epron Daniel, Harden Jennifer, Harmon Mark E., Hoffman Forrest, Kumar Jitendra, David McGuire Anthony, Vargas Rodrigo","journalName":"Ecosphere","publicationDate":"6/2016"},"contributors":{"authors":[{"text":"Bond-Lamberty, Ben","contributorId":172028,"corporation":false,"usgs":false,"family":"Bond-Lamberty","given":"Ben","email":"","affiliations":[{"id":33852,"text":"Univ of Maryland, College Park, MD","active":true,"usgs":false},{"id":13566,"text":"Joint Global Change Research Institute, Pacific Northwest National Laboratory","active":true,"usgs":false}],"preferred":false,"id":655178,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Epron, Daniel","contributorId":177277,"corporation":false,"usgs":false,"family":"Epron","given":"Daniel","email":"","affiliations":[],"preferred":false,"id":655179,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Harden, Jennifer W. 0000-0002-6570-8259 jharden@usgs.gov","orcid":"https://orcid.org/0000-0002-6570-8259","contributorId":1971,"corporation":false,"usgs":true,"family":"Harden","given":"Jennifer","email":"jharden@usgs.gov","middleInitial":"W.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true},{"id":617,"text":"Volcano Science Center","active":true,"usgs":true},{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true}],"preferred":true,"id":655180,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Harmon, Mark E.","contributorId":96961,"corporation":false,"usgs":true,"family":"Harmon","given":"Mark","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":655181,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hoffman, Forrest","contributorId":177278,"corporation":false,"usgs":false,"family":"Hoffman","given":"Forrest","email":"","affiliations":[],"preferred":false,"id":655132,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kumar, Jitendra","contributorId":177279,"corporation":false,"usgs":false,"family":"Kumar","given":"Jitendra","email":"","affiliations":[],"preferred":false,"id":655182,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"McGuire, Anthony D. 0000-0003-4646-0750 ffadm@usgs.gov","orcid":"https://orcid.org/0000-0003-4646-0750","contributorId":2493,"corporation":false,"usgs":true,"family":"McGuire","given":"Anthony","email":"ffadm@usgs.gov","middleInitial":"D.","affiliations":[],"preferred":false,"id":655183,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Vargas, Rodrigo","contributorId":172036,"corporation":false,"usgs":false,"family":"Vargas","given":"Rodrigo","affiliations":[],"preferred":false,"id":655184,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70174034,"text":"70174034 - 2016 - Spatial modeling of wild bird risk factors to investigate highly pathogenic A(H5N1) avian influenza virus transmission","interactions":[],"lastModifiedDate":"2018-08-09T12:46:44","indexId":"70174034","displayToPublicDate":"2016-06-23T14:45:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":948,"text":"Avian Diseases","active":true,"publicationSubtype":{"id":10}},"title":"Spatial modeling of wild bird risk factors to investigate highly pathogenic A(H5N1) avian influenza virus transmission","docAbstract":"<p>One of the longest-persisting avian influenza viruses in history, highly pathogenic avian influenza virus (HPAIV) A(H5N1), continues to evolve after 18 years, advancing the threat of a global pandemic. Wild waterfowl (family Anatidae), are reported as secondary transmitters of HPAIV, and primary reservoirs for low-pathogenic avian influenza viruses, yet spatial inputs for disease risk modeling for this group have been lacking. Using GIS and Monte Carlo simulations, we developed geospatial indices of waterfowl abundance at 1 and 30 km resolutions and for the breeding and wintering seasons for China, the epicenter of H5N1. Two spatial layers were developed: cumulative waterfowl abundance (WAB), a measure of predicted abundance across species, and cumulative abundance weighted by H5N1 prevalence (WPR), whereby abundance for each species was adjusted based on prevalence values then totaled across species. Spatial patterns of the model output differed between seasons, with higher WAB and WPR in the northern and western regions of China for the breeding season and in the southeast for the wintering season. Uncertainty measures indicated highest error in southeastern China for both WAB and WPR. We also explored the effect of resampling waterfowl layers from 1 km to 30 km resolution for multi-scale risk modeling. Results indicated low average difference (less than 0.16 and 0.01 standard deviations for WAB and WPR, respectively), with greatest differences in the north for the breeding season and southeast for the wintering season. This work provides the first geospatial models of waterfowl abundance available for China. The indices provide important inputs for modeling disease transmission risk at the interface of poultry and wild birds. These models are easily adaptable, have broad utility to both disease and conservation needs, and will be available to the scientific community for advanced modeling applications.</p>","language":"English","publisher":"American Association of Avian Pathologists","doi":"10.1637/11125-050615-Reg","usgsCitation":"Prosser, D.J., Hungerford, L.L., Erwin, R.M., Ottinger, M.A., Takekawa, J.Y., Newman, S.H., Xiao, X., and Ellis, E.C., 2016, Spatial modeling of wild bird risk factors to investigate highly pathogenic A(H5N1) avian influenza virus transmission: Avian Diseases, v. 60, no. 1s, p. 329-336, https://doi.org/10.1637/11125-050615-Reg.","productDescription":"8 p.","startPage":"329","endPage":"336","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-071327","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true},{"id":34983,"text":"Contaminant Biology Program","active":true,"usgs":true}],"links":[{"id":438608,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9B6ZDUR","text":"USGS data release","linkHelpText":"Spatial Models of Wild Bird Risk Factors for Highly Pathogenic A(H5N1) Avian Influenza Virus Transmission"},{"id":324325,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"60","issue":"1s","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"576cfa1de4b07657d1a33c66","contributors":{"authors":[{"text":"Prosser, Diann J. 0000-0002-5251-1799 dprosser@usgs.gov","orcid":"https://orcid.org/0000-0002-5251-1799","contributorId":2389,"corporation":false,"usgs":true,"family":"Prosser","given":"Diann","email":"dprosser@usgs.gov","middleInitial":"J.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":640624,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hungerford, Laura L.","contributorId":14291,"corporation":false,"usgs":true,"family":"Hungerford","given":"Laura","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":640625,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Erwin, R. Michael 0000-0003-2108-9502","orcid":"https://orcid.org/0000-0003-2108-9502","contributorId":57125,"corporation":false,"usgs":true,"family":"Erwin","given":"R.","email":"","middleInitial":"Michael","affiliations":[],"preferred":false,"id":640626,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ottinger, Mary Ann","contributorId":26422,"corporation":false,"usgs":false,"family":"Ottinger","given":"Mary","email":"","middleInitial":"Ann","affiliations":[{"id":7083,"text":"University of Maryland","active":true,"usgs":false}],"preferred":false,"id":640627,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Takekawa, John Y. 0000-0003-0217-5907 john_takekawa@usgs.gov","orcid":"https://orcid.org/0000-0003-0217-5907","contributorId":176168,"corporation":false,"usgs":true,"family":"Takekawa","given":"John","email":"john_takekawa@usgs.gov","middleInitial":"Y.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":640628,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Newman, Scott H.","contributorId":101372,"corporation":false,"usgs":true,"family":"Newman","given":"Scott","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":640629,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Xiao, Xianming","contributorId":145908,"corporation":false,"usgs":false,"family":"Xiao","given":"Xianming","email":"","affiliations":[{"id":16292,"text":"Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China","active":true,"usgs":false}],"preferred":false,"id":640630,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Ellis, Erie C.","contributorId":87678,"corporation":false,"usgs":true,"family":"Ellis","given":"Erie","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":640631,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70174017,"text":"70174017 - 2016 - Comparing three approaches of evapotranspiration estimation in mixed urban vegetation; field-based, remote sensing-based and observational-based methods","interactions":[],"lastModifiedDate":"2016-06-22T16:41:39","indexId":"70174017","displayToPublicDate":"2016-06-22T17:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3250,"text":"Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Comparing three approaches of evapotranspiration estimation in mixed urban vegetation; field-based, remote sensing-based and observational-based methods","docAbstract":"<p>Despite being the driest inhabited continent, Australia has one of the highest per capita water consumptions in the world. In addition, instead of having fit-for-purpose water supplies (using different qualities of water for different applications), highly treated drinking water is used for nearly all of Australia&rsquo;s urban water supply needs, including landscape irrigation. The water requirement of urban landscapes, and particularly urban parklands, is of growing concern. The estimation of ET and subsequently plant water requirements in urban vegetation needs to consider the heterogeneity of plants, soils, water and climate characteristics. Accurate estimation of evapotranspiration (ET), which is the main component of a plant&rsquo;s water requirement, in urban parks is highly desirable because this water maintains the health of green infrastructure and this in turn provides essential ecosystem services. This research contributes to a broader effort to establish sustainable irrigation practices within the Adelaide Parklands in Adelaide, South Australia.</p>","language":"English","publisher":"MDPI AG","doi":"10.3390/rs8060492","usgsCitation":"Nouri, H., Glenn, E.P., Beecham, S., Chavoshi Boroujeni, S., Sutton, P., Alaghmand, S., Nagler, P.L., and Noori, B., 2016, Comparing three approaches of evapotranspiration estimation in mixed urban vegetation; field-based, remote sensing-based and observational-based methods: Remote Sensing, v. 8, no. 6, Article 492; 15 p., https://doi.org/10.3390/rs8060492.","productDescription":"Article 492; 15 p.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-072315","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":470854,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/rs8060492","text":"Publisher Index Page"},{"id":324278,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"8","issue":"6","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-10","publicationStatus":"PW","scienceBaseUri":"576ba89de4b07657d1a1765e","contributors":{"authors":[{"text":"Nouri, Hamideh 0000-0002-7424-5030","orcid":"https://orcid.org/0000-0002-7424-5030","contributorId":16327,"corporation":false,"usgs":true,"family":"Nouri","given":"Hamideh","email":"","affiliations":[],"preferred":false,"id":640499,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Glenn, Edward P.","contributorId":19289,"corporation":false,"usgs":true,"family":"Glenn","given":"Edward","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":640500,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Beecham, Simon","contributorId":95397,"corporation":false,"usgs":true,"family":"Beecham","given":"Simon","affiliations":[],"preferred":false,"id":640501,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Chavoshi Boroujeni, Sattar","contributorId":172386,"corporation":false,"usgs":false,"family":"Chavoshi Boroujeni","given":"Sattar","email":"","affiliations":[{"id":27030,"text":"School of Natural and Built Environments, University of South Australia, Adelaide, SA","active":true,"usgs":false}],"preferred":false,"id":640502,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Sutton, Paul","contributorId":172387,"corporation":false,"usgs":false,"family":"Sutton","given":"Paul","email":"","affiliations":[{"id":27030,"text":"School of Natural and Built Environments, University of South Australia, Adelaide, SA","active":true,"usgs":false}],"preferred":false,"id":640503,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Alaghmand, Sina","contributorId":172388,"corporation":false,"usgs":false,"family":"Alaghmand","given":"Sina","email":"","affiliations":[{"id":27031,"text":"School of Natural and Built Environments, U. So. Aus and Discipline of Civil Engineering, School Of Engineering, Monash University Malaysia","active":true,"usgs":false}],"preferred":false,"id":640504,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Nagler, Pamela L. 0000-0003-0674-103X pnagler@usgs.gov","orcid":"https://orcid.org/0000-0003-0674-103X","contributorId":1398,"corporation":false,"usgs":true,"family":"Nagler","given":"Pamela","email":"pnagler@usgs.gov","middleInitial":"L.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":640498,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Noori, Behnaz","contributorId":172392,"corporation":false,"usgs":false,"family":"Noori","given":"Behnaz","email":"","affiliations":[],"preferred":false,"id":640518,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70173953,"text":"70173953 - 2016 - Catalog of type specimens of recent mammals: Orders Carnivora, Perissodactyla, Artiodactyla, and Cetacea in the National Museum of Natural History, Smithsonian Institution","interactions":[],"lastModifiedDate":"2021-05-05T14:26:34.219171","indexId":"70173953","displayToPublicDate":"2016-06-21T16:45:00","publicationYear":"2016","noYear":false,"publicationType":{"id":4,"text":"Book"},"publicationSubtype":{"id":15,"text":"Monograph"},"seriesTitle":{"id":8584,"text":"Smithsonian Contributions to Zoology","onlineIssn":"1943-6696","printIssn":"0081-0282","active":true,"publicationSubtype":{"id":15}},"title":"Catalog of type specimens of recent mammals: Orders Carnivora, Perissodactyla, Artiodactyla, and Cetacea in the National Museum of Natural History, Smithsonian Institution","docAbstract":"<p>The type collection of Recent mammals in the Division of Mammals, National Museum of Natural History, Smithsonian Institution, contains 612 specimens bearing names of 604 species-group taxa of Carnivora, Perissodactyla, Artiodactyla, and Cetacea as of May 2016. This catalog presents an annotated list of these holdings comprising 582 holotypes; 16 lectotypes, two of which are newly designated herein; 7 syntypes (15 specimens); and 1 neotype. Included are several specimens that should be in the collection but cannot be found or are now known to be in other collections and therefore are not in the database. Thirty-seven of the names are new since the last type catalog covering these orders, Arthur J. Poole and Viola S. Schantz&rsquo;s 1942 &ldquo;Catalog of the Type Specimens of Mammals in the United States National Museum, Including the Biological Surveys Collection&rdquo; (Bulletin of the United States National Museum, 178). One of these, Lutra iowa Goldman, 1941, was transferred to the National Museum&rsquo;s Paleobiology Department collection and is mentioned only briefly in this work. Orders and families are arranged systematically following D. E. Wilson and D. M. Reeder&rsquo;s 2005 Mammal Species of the World: A Taxonomic and Geographic Reference, third edition, volume 1; within families, currently recognized genera are arranged alphabetically, and within each currently recognized genus, species and subspecies accounts are arranged alphabetically by original published name. Information in each account includes original name and abbreviated citation thereto, current name if other than original, citation for first use of current name combination for the taxon, type designation, U.S. National Museum catalog number(s), preparation, age and sex, date of collection and collector, original collector number, type locality, and remarks as appropriate. Digital photographs of each specimen will serve as a condition report and will be attached to each electronic specimen record. An addendum contains two accounts for holotypes added to the collection subsequent to the publication of the catalog for their taxa. Appendices tabulate summary data for all four of our recent type catalogs (Fisher and Ludwig, 2012, 2014, 2015, and this volume) and include authors of names, collectors of type specimens, countries, islands, and provinces or states in which type specimens were collected, numbers of new names per decade, and summary numbers for holotypes, lectotypes, syntypes, neotypes, and new taxa since the last type catalog (Poole and Schantz, 1942) covering the entire type collection.</p>","language":"English","publisher":"Smithsonian institution Scholarly Press","doi":"10.5479/si.19436696.646","usgsCitation":"Fisher, R.D., and Ludwig, C.A., 2016, Catalog of type specimens of recent mammals: Orders Carnivora, Perissodactyla, Artiodactyla, and Cetacea in the National Museum of Natural History, Smithsonian Institution: Smithsonian Contributions to Zoology, v. 646, vi, 112 p., https://doi.org/10.5479/si.19436696.646.","productDescription":"vi, 112 p.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-072154","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":470866,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.5479/si.19436696.646","text":"Publisher Index Page"},{"id":324163,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"646","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-08","publicationStatus":"PW","scienceBaseUri":"576a571ce4b07657d1a064cf","contributors":{"authors":[{"text":"Fisher, Robert D. 0000-0002-2956-3240 rdfisher@usgs.gov","orcid":"https://orcid.org/0000-0002-2956-3240","contributorId":3913,"corporation":false,"usgs":true,"family":"Fisher","given":"Robert","email":"rdfisher@usgs.gov","middleInitial":"D.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":639747,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ludwig, Craig A.","contributorId":19045,"corporation":false,"usgs":true,"family":"Ludwig","given":"Craig","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":639748,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70173954,"text":"70173954 - 2016 - State-dependent resource harvesting with lagged information about system states","interactions":[],"lastModifiedDate":"2016-06-20T09:47:59","indexId":"70173954","displayToPublicDate":"2016-06-17T15:45:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"State-dependent resource harvesting with lagged information about system states","docAbstract":"<p>Markov decision processes (MDPs), which involve a temporal sequence of actions conditioned on the state of the managed system, are increasingly being applied in natural resource management. This study focuses on the modification of a traditional MDP to account for those cases in which an action must be chosen after a significant time lag in observing system state, but just prior to a new observation. In order to calculate an optimal decision policy under these conditions, possible actions must be conditioned on the previous observed system state and action taken. We show how to solve these problems when the state transition structure is known and when it is uncertain. Our focus is on the latter case, and we show how actions must be conditioned not only on the previous system state and action, but on the probabilities associated with alternative models of system dynamics. To demonstrate this framework, we calculated and simulated optimal, adaptive policies for MDPs with lagged states for the problem of deciding annual harvest regulations for mallards (Anas platyrhynchos) in the United States. In this particular example, changes in harvest policy induced by the use of lagged information about system state were sufficient to maintain expected management performance (e.g. population size, harvest) even in the face of an uncertain system state at the time of a decision.</p>","language":"English","publisher":"PLOS","doi":"10.1371/journal.pone.0157373","usgsCitation":"Johnson, F.A., Fackler, P.L., Boomer, G., Zimmerman, G.S., Williams, B.K., Nichols, J.D., and Dorazio, R., 2016, State-dependent resource harvesting with lagged information about system states: PLoS ONE, v. 11, no. 6, p. 1-21, https://doi.org/10.1371/journal.pone.0157373.","productDescription":"21 p.","startPage":"1","endPage":"21","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-071587","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":470874,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0157373","text":"Publisher Index Page"},{"id":323944,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"11","issue":"6","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationDate":"2016-06-17","publicationStatus":"PW","scienceBaseUri":"576913e8e4b07657d19ff273","contributors":{"authors":[{"text":"Johnson, Fred A. 0000-0002-5854-3695 fjohnson@usgs.gov","orcid":"https://orcid.org/0000-0002-5854-3695","contributorId":2773,"corporation":false,"usgs":true,"family":"Johnson","given":"Fred","email":"fjohnson@usgs.gov","middleInitial":"A.","affiliations":[{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true},{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":639749,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Fackler, Paul L.","contributorId":17487,"corporation":false,"usgs":true,"family":"Fackler","given":"Paul","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":639750,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Boomer, G Scott","contributorId":172150,"corporation":false,"usgs":false,"family":"Boomer","given":"G Scott","affiliations":[{"id":26994,"text":"Div. of Migratory Bird Management, U.S. Fish and Wildlife Service, MD","active":true,"usgs":false}],"preferred":false,"id":639751,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Zimmerman, Guthrie S.","contributorId":42473,"corporation":false,"usgs":false,"family":"Zimmerman","given":"Guthrie","email":"","middleInitial":"S.","affiliations":[{"id":6661,"text":"US Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":639752,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Williams, Byron K. 0000-0001-7644-1396","orcid":"https://orcid.org/0000-0001-7644-1396","contributorId":86616,"corporation":false,"usgs":true,"family":"Williams","given":"Byron","email":"","middleInitial":"K.","affiliations":[{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true}],"preferred":false,"id":639753,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Nichols, James D. 0000-0002-7631-2890 jnichols@usgs.gov","orcid":"https://orcid.org/0000-0002-7631-2890","contributorId":140652,"corporation":false,"usgs":true,"family":"Nichols","given":"James","email":"jnichols@usgs.gov","middleInitial":"D.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":false,"id":639754,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Dorazio, Robert 0000-0003-2663-0468 bob_dorazio@usgs.gov","orcid":"https://orcid.org/0000-0003-2663-0468","contributorId":172151,"corporation":false,"usgs":true,"family":"Dorazio","given":"Robert","email":"bob_dorazio@usgs.gov","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":5051,"text":"FLWSC-Orlando","active":true,"usgs":true}],"preferred":true,"id":639755,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70173862,"text":"70173862 - 2016 - A primer on potential impacts, management priorities, and future directions for <i>Elodea</i> spp. in high latitude systems: learning from the Alaskan experience","interactions":[],"lastModifiedDate":"2016-07-07T10:01:30","indexId":"70173862","displayToPublicDate":"2016-06-15T16:45:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1919,"text":"Hydrobiologia","onlineIssn":"1573-5117","printIssn":"0018-8158","active":true,"publicationSubtype":{"id":10}},"title":"A primer on potential impacts, management priorities, and future directions for <i>Elodea</i> spp. in high latitude systems: learning from the Alaskan experience","docAbstract":"<p>Invasive species introductions in Arctic and Subarctic ecosystems are growing as climate change manifests and human activity increases in high latitudes. The aquatic plants of the genus Elodea are potential invaders to Arctic and Subarctic ecosystems circumpolar and at least one species is already established in Alaska, USA. To illustrate the problems of preventing, eradicating, containing, and mitigating aquatic, invasive plants in Arctic and Subarctic ecosystems, we review the invasion dynamics of Elodea and provide recommendations for research and management efforts in Alaska. Foremost, we conclude the remoteness of Arctic and Subarctic systems such as Alaska is no longer a protective attribute against invasions, as transportation pathways now reach throughout these regions. Rather, high costs of operating in remote Arctic and Subarctic systems hinders detection of infestations and limits eradication or mitigation, emphasizing management priorities of prevention and containment of aquatic plant invaders in Alaska and other Arctic and Subarctic systems.</p>","language":"English","publisher":"Springer","doi":"10.1007/s10750-016-2767-x","usgsCitation":"Carey, M.P., Sethi, S.A., Larsen, S.J., and Rich, C.F., 2016, A primer on potential impacts, management priorities, and future directions for <i>Elodea</i> spp. in high latitude systems: learning from the Alaskan experience: Hydrobiologia, v. 777, no. 1, p. 1-19, https://doi.org/10.1007/s10750-016-2767-x.","productDescription":"19 p.","startPage":"1","endPage":"19","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-063244","costCenters":[{"id":118,"text":"Alaska Science Center Geography","active":true,"usgs":true}],"links":[{"id":323718,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"777","issue":"1","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2016-04-26","publicationStatus":"PW","scienceBaseUri":"57626e1ce4b07657d199cd5c","contributors":{"authors":[{"text":"Carey, Michael P. 0000-0002-3327-8995 mcarey@usgs.gov","orcid":"https://orcid.org/0000-0002-3327-8995","contributorId":5397,"corporation":false,"usgs":true,"family":"Carey","given":"Michael","email":"mcarey@usgs.gov","middleInitial":"P.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true},{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":638837,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Sethi, Suresh A","contributorId":171843,"corporation":false,"usgs":false,"family":"Sethi","given":"Suresh","email":"","middleInitial":"A","affiliations":[{"id":26952,"text":"U.S. Fish and Wildlife Service, Anchorage, AK; Fisheries, Aquatic Science and Technology Lab, Alaska Pacific University, Anchorage, AK and  U.S. Geological Survey New York Cooperative Fish and Wildlife Research Unit, Cornell University, Ithaca, NY","active":true,"usgs":false}],"preferred":false,"id":638838,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Larsen, Sabrina J","contributorId":171844,"corporation":false,"usgs":false,"family":"Larsen","given":"Sabrina","email":"","middleInitial":"J","affiliations":[{"id":26953,"text":"Fisheries, Aquatic Science and Technology Lab, Alaska Pacific University, Anchorage, AK and U.S. Forest Service, Santa Fe National Forest, Santa Fe, NM","active":true,"usgs":false}],"preferred":false,"id":638839,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Rich, Cecil F","contributorId":171845,"corporation":false,"usgs":false,"family":"Rich","given":"Cecil","email":"","middleInitial":"F","affiliations":[{"id":26954,"text":"Fisheries and Ecological Services Division, U.S. Fish and Wildlife Service, Anchorage, AK and U.S. Forest Service, Santa Fe National Forest, Santa Fe, NM","active":true,"usgs":false}],"preferred":false,"id":638840,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70173915,"text":"70173915 - 2016 - A new genus and species of blind sleeper (Teleostei: Eleotridae) from Oaxaca, Mexico: First obligate cave gobiiform in the Western Hemisphere","interactions":[],"lastModifiedDate":"2016-06-22T12:04:33","indexId":"70173915","displayToPublicDate":"2016-06-15T15:15:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1337,"text":"Copeia","active":true,"publicationSubtype":{"id":10}},"title":"A new genus and species of blind sleeper (Teleostei: Eleotridae) from Oaxaca, Mexico: First obligate cave gobiiform in the Western Hemisphere","docAbstract":"<p><i>Caecieleotris morrisi</i><span>, new genus and species of sleeper (family Eleotridae), is described from a submerged freshwater cave in a karst region of the northern portion of the State of Oaxaca, Mexico, R&iacute;o Papaloapan drainage, Gulf of Mexico basin. The new species represents the first cave-adapted sleeper known from the Western Hemisphere and is one of only 13 stygobitic gobiiforms known worldwide, with all others limited in distribution to the Indo-Pacific region. The new taxon represents a third independent evolution of a hypogean lifestyle in sleepers, the others being two species of</span><i>Oxyeleotris</i><span>&nbsp;(</span><i>O</i><span>.&nbsp;</span><i>caeca</i><span>&nbsp;and&nbsp;</span><i>O</i><span>.&nbsp;</span><i>colasi</i><span>) from New Guinea and a single species,&nbsp;</span><i>Bostrychus microphthalmus</i><span>, from Sulawesi.&nbsp;</span><i>Caecieleotris morrisi</i><span>, new species, is distinguished from epigean eleotrids of the Western Atlantic in lacking functional eyes and body pigmentation, as well as having other troglomorphic features. It shares convergent aspects of morphology with cave-dwelling species of&nbsp;</span><i>Oxyeleotris</i><span>&nbsp;and&nbsp;</span><i>B</i><span>.&nbsp;</span><i>microphthalmus</i><span>&nbsp;but differs from those taxa in lacking cephalic pores and head squamation, among other characters. Description of&nbsp;</span><i>C</i><span>.&nbsp;</span><i>morrisi,</i><span>&nbsp;new species, brings the total number of eleotrid species known from Mexico to 12. Seven of these, including the new species, occur on the Atlantic Slope.</span></p>","language":"English","publisher":"The American Society of Ichthyologists and Herpetologists","doi":"10.1643/CI-15-275","usgsCitation":"Walsh, S.J., and Chakrabarty, P., 2016, A new genus and species of blind sleeper (Teleostei: Eleotridae) from Oaxaca, Mexico: First obligate cave gobiiform in the Western Hemisphere: Copeia, v. 104, no. 2, p. 506-517, https://doi.org/10.1643/CI-15-275.","productDescription":"12 p.","startPage":"506","endPage":"517","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-064711","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":488507,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://publication.plazi.org/id/FFB2FFEDEF2FFF9279202262D23DFFD2","text":"External Repository"},{"id":323704,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"104","issue":"2","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57626e1be4b07657d199cd55","contributors":{"authors":[{"text":"Walsh, Stephen J. 0000-0002-1009-8537 swalsh@usgs.gov","orcid":"https://orcid.org/0000-0002-1009-8537","contributorId":1456,"corporation":false,"usgs":true,"family":"Walsh","given":"Stephen","email":"swalsh@usgs.gov","middleInitial":"J.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":639090,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chakrabarty, Prosanta","contributorId":171917,"corporation":false,"usgs":false,"family":"Chakrabarty","given":"Prosanta","email":"","affiliations":[{"id":16756,"text":"Louisiana State University, Baton Rouge, LA","active":true,"usgs":false}],"preferred":false,"id":639091,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70173821,"text":"70173821 - 2016 - And the first one now will later be last: Time-reversal in cormack-jolly-seber models","interactions":[],"lastModifiedDate":"2016-06-15T16:33:05","indexId":"70173821","displayToPublicDate":"2016-06-15T00:25:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5001,"text":"Statistical Science","active":true,"publicationSubtype":{"id":10}},"title":"And the first one now will later be last: Time-reversal in cormack-jolly-seber models","docAbstract":"The models of Cormack, Jolly and Seber (CJS) are remarkable in providing a rich set of inferences about population survival, recruitment, abundance and even sampling probabilities from a seemingly limited data source: a matrix of 1's and 0's reflecting animal captures and recaptures at multiple sampling occasions. Survival and sampling probabilities are estimated directly in CJS models, whereas estimators for recruitment and abundance were initially obtained as derived quantities. Various investigators have noted that just as standard modeling provides direct inferences about survival, reversing the time order of capture history data permits direct modeling and inference about recruitment. Here we review the development of reverse-time modeling efforts, emphasizing the kinds of inferences and questions to which they seem well suited.","language":"English","publisher":"Project Euclid","doi":"10.1214/16-STS546","usgsCitation":"Nichols, J.D., 2016, And the first one now will later be last: Time-reversal in cormack-jolly-seber models: Statistical Science, v. 31, no. 2, p. 175-190, https://doi.org/10.1214/16-STS546.","productDescription":"16 p.","startPage":"175","endPage":"190","ipdsId":"IP-071767","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":470888,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1214/16-sts546","text":"Publisher Index Page"},{"id":323723,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"31","issue":"2","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57626e1ce4b07657d199cd60","contributors":{"authors":[{"text":"Nichols, James D. 0000-0002-7631-2890 jnichols@usgs.gov","orcid":"https://orcid.org/0000-0002-7631-2890","contributorId":140652,"corporation":false,"usgs":true,"family":"Nichols","given":"James","email":"jnichols@usgs.gov","middleInitial":"D.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":false,"id":638544,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70173848,"text":"70173848 - 2016 - Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater","interactions":[],"lastModifiedDate":"2016-06-14T12:44:01","indexId":"70173848","displayToPublicDate":"2016-06-14T13:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":850,"text":"Applied and Environmental Microbiology","active":true,"publicationSubtype":{"id":10}},"title":"Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater","docAbstract":"<p><span>The mechanisms, key organisms, and geochemical significance of biological low-pH Mn(II) oxidation are largely unexplored. Here, we investigated the structure of indigenous Mn(II)-oxidizing microbial communities in a secondary subsurface Mn oxide deposit influenced by acidic (pH 4.8) metal-rich groundwater in a former uranium mining area. Microbial diversity was highest in the Mn deposit compared to the adjacent soil layers and included the majority of known Mn(II)-oxidizing bacteria (MOB) and two genera of known Mn(II)-oxidizing fungi (MOF). Electron X-ray microanalysis showed that romanechite [(Ba,H</span><sub>2</sub><span>O)</span><sub>2</sub><span>(Mn</span><sup>4+</sup><span>,Mn</span><sup>3+</sup><span>)</span><sub>5</sub><span>O</span><sub>10</sub><span>] was conspicuously enriched in the deposit. Canonical correspondence analysis revealed that certain fungal, bacterial, and archaeal groups were firmly associated with the autochthonous Mn oxides. Eight MOB within the&nbsp;</span><span id=\"named-content-1\" class=\"named-content genus-species\">Proteobacteria</span><span>,&nbsp;</span><span id=\"named-content-2\" class=\"named-content genus-species\">Actinobacteria</span><span>, and&nbsp;</span><span id=\"named-content-3\" class=\"named-content genus-species\">Bacteroidetes</span><span>&nbsp;and one MOF strain belonging to&nbsp;</span><span id=\"named-content-4\" class=\"named-content genus-species\">Ascomycota</span><span>&nbsp;were isolated at pH 5.5 or 7.2 from the acidic Mn deposit. Soil-groundwater microcosms demonstrated 2.5-fold-faster Mn(II) depletion in the Mn deposit than adjacent soil layers. No depletion was observed in the abiotic controls, suggesting that biological contribution is the main driver for Mn(II) oxidation at low pH. The composition and species specificity of the native low-pH Mn(II) oxidizers were highly adapted to&nbsp;</span><i>in situ</i><span>&nbsp;conditions, and these organisms may play a central role in the fundamental biogeochemical processes (e.g., metal natural attenuation) occurring in the acidic, oligotrophic, and metalliferous subsoil ecosystems.</span></p>","language":"English","publisher":"American Society for Microbiology","doi":"10.1128/AEM.03844-15","usgsCitation":"Bohu, T., Akob, D.M., Abratis, M., Lazar, C., and Küsel, K., 2016, Biological low pH Mn(II) oxidation in a manganese deposit influenced by metal-rich groundwater: Applied and Environmental Microbiology, v. 82, no. 10, p. 3009-3021, https://doi.org/10.1128/AEM.03844-15.","productDescription":"13 p.","startPage":"3009","endPage":"3021","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-073478","costCenters":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true}],"links":[{"id":470891,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1128/aem.03844-15","text":"Publisher Index Page"},{"id":323588,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"82","issue":"10","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"57611c9ce4b04f417c2c32eb","contributors":{"authors":[{"text":"Bohu, Tsing","contributorId":37657,"corporation":false,"usgs":false,"family":"Bohu","given":"Tsing","email":"","affiliations":[{"id":13425,"text":"Aquatic Geomicrobiology, Institute of Ecology, Friedrich Schiller University Jena, Germany","active":true,"usgs":false}],"preferred":false,"id":638718,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Akob, Denise M. 0000-0003-1534-3025 dakob@usgs.gov","orcid":"https://orcid.org/0000-0003-1534-3025","contributorId":4980,"corporation":false,"usgs":true,"family":"Akob","given":"Denise","email":"dakob@usgs.gov","middleInitial":"M.","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":5058,"text":"Office of the Chief Scientist for Water","active":true,"usgs":true}],"preferred":true,"id":638719,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Abratis, Michael","contributorId":171795,"corporation":false,"usgs":false,"family":"Abratis","given":"Michael","email":"","affiliations":[{"id":26945,"text":"Institute of Geosciences, Friedrich Schiller University Jena, Burgweg 11, 07743 Jena, Germany","active":true,"usgs":false}],"preferred":false,"id":638720,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lazar, Cassandre S.","contributorId":171796,"corporation":false,"usgs":false,"family":"Lazar","given":"Cassandre S.","affiliations":[{"id":26946,"text":"Aquatic Geomicrobiology, Institute of Ecology, Friedrich Schiller University Jena, Dornburger-Str. 159, 07743 Jena, Germany","active":true,"usgs":false}],"preferred":false,"id":638721,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Küsel, Kirsten","contributorId":96191,"corporation":false,"usgs":false,"family":"Küsel","given":"Kirsten","affiliations":[{"id":13425,"text":"Aquatic Geomicrobiology, Institute of Ecology, Friedrich Schiller University Jena, Germany","active":true,"usgs":false}],"preferred":false,"id":638722,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70173846,"text":"70173846 - 2016 - Wastewater disposal from unconventional oil and gas development degrades stream quality at a West Virginia injection facility","interactions":[],"lastModifiedDate":"2018-08-07T12:10:53","indexId":"70173846","displayToPublicDate":"2016-06-14T12:15:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1565,"text":"Environmental Science & Technology","onlineIssn":"1520-5851","printIssn":"0013-936X","active":true,"publicationSubtype":{"id":10}},"title":"Wastewater disposal from unconventional oil and gas development degrades stream quality at a West Virginia injection facility","docAbstract":"<p>The development of unconventional oil and gas (UOG) resources has rapidly increased in recent years; however, the environmental impacts and risks are poorly understood. A single well can generate millions of liters of wastewater, representing a mixture of formation brine and injected hydraulic fracturing fluids. One of the most common methods for wastewater disposal is underground injection; we are assessing potential risks of this method through an intensive, interdisciplinary study at an injection disposal facility in West Virginia. In June 2014, waters collected downstream from the site had elevated specific conductance (416 &mu;S/cm) and Na, Cl, Ba, Br, Sr, and Li concentrations, compared to upstream, background waters (conductivity, 74 &mu;S/cm). Elevated TDS, a marker of UOG wastewater, provided an early indication of impacts in the stream. Wastewater inputs are also evident by changes in 87Sr/86Sr in streamwater adjacent to the disposal facility. Sediments downstream from the facility were enriched in Ra and had high bioavailable Fe(III) concentrations relative to upstream sediments. Microbial communities in downstream sediments had lower diversity and shifts in composition. Although the hydrologic pathways were not able to be assessed, these data provide evidence demonstrating that activities at the disposal facility are impacting a nearby stream and altering the biogeochemistry of nearby ecosystems.</p>","language":"English","publisher":"American Chemical Society","doi":"10.1021/acs.est.6b00428","usgsCitation":"Akob, D.M., Mumford, A.C., Orem, W.H., Engle, M.A., Klinges, J., Kent, D.B., and Cozzarelli, I.M., 2016, Wastewater disposal from unconventional oil and gas development degrades stream quality at a West Virginia injection facility: Environmental Science & Technology, v. 50, no. 11, p. 5517-5525, https://doi.org/10.1021/acs.est.6b00428.","productDescription":"9 p.","startPage":"5517","endPage":"5525","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-075053","costCenters":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":589,"text":"Toxic Substances Hydrology Program","active":true,"usgs":true}],"links":[{"id":470895,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1021/acs.est.6b00428","text":"Publisher Index Page"},{"id":323576,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"50","issue":"11","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2016-05-18","publicationStatus":"PW","scienceBaseUri":"57611c9fe4b04f417c2c330c","chorus":{"doi":"10.1021/acs.est.6b00428","url":"http://dx.doi.org/10.1021/acs.est.6b00428","publisher":"American Chemical Society (ACS)","authors":"Akob Denise M., Mumford Adam C., Orem William, Engle Mark A., Klinges J. Grace, Kent Douglas B., Cozzarelli Isabelle M.","journalName":"Environmental Science & Technology","publicationDate":"6/7/2016","auditedOn":"5/20/2016","publiclyAccessibleDate":"5/18/2016"},"contributors":{"authors":[{"text":"Akob, Denise M. 0000-0003-1534-3025 dakob@usgs.gov","orcid":"https://orcid.org/0000-0003-1534-3025","contributorId":4980,"corporation":false,"usgs":true,"family":"Akob","given":"Denise","email":"dakob@usgs.gov","middleInitial":"M.","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":5058,"text":"Office of the Chief Scientist for Water","active":true,"usgs":true}],"preferred":true,"id":638657,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mumford, Adam C. 0000-0002-8082-8910 amumford@usgs.gov","orcid":"https://orcid.org/0000-0002-8082-8910","contributorId":171791,"corporation":false,"usgs":true,"family":"Mumford","given":"Adam","email":"amumford@usgs.gov","middleInitial":"C.","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true}],"preferred":true,"id":638658,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Orem, William H. 0000-0003-4990-0539 borem@usgs.gov","orcid":"https://orcid.org/0000-0003-4990-0539","contributorId":577,"corporation":false,"usgs":true,"family":"Orem","given":"William","email":"borem@usgs.gov","middleInitial":"H.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":638659,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Engle, Mark A. 0000-0001-5258-7374 engle@usgs.gov","orcid":"https://orcid.org/0000-0001-5258-7374","contributorId":584,"corporation":false,"usgs":true,"family":"Engle","given":"Mark","email":"engle@usgs.gov","middleInitial":"A.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":638660,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Klinges, Julia jklinges@usgs.gov","contributorId":171792,"corporation":false,"usgs":true,"family":"Klinges","given":"Julia","email":"jklinges@usgs.gov","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true}],"preferred":true,"id":638661,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kent, Douglas B. 0000-0003-3758-8322 dbkent@usgs.gov","orcid":"https://orcid.org/0000-0003-3758-8322","contributorId":1871,"corporation":false,"usgs":true,"family":"Kent","given":"Douglas","email":"dbkent@usgs.gov","middleInitial":"B.","affiliations":[{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":638662,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Cozzarelli, Isabelle M. 0000-0002-5123-1007 icozzare@usgs.gov","orcid":"https://orcid.org/0000-0002-5123-1007","contributorId":1693,"corporation":false,"usgs":true,"family":"Cozzarelli","given":"Isabelle","email":"icozzare@usgs.gov","middleInitial":"M.","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":49175,"text":"Geology, Energy & Minerals Science Center","active":true,"usgs":true}],"preferred":true,"id":638663,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70173830,"text":"70173830 - 2016 - Ashy Storm-Petrel <i>Oceanodroma homochroa</i> mist-netting and capture rates in the California Channel Islands, 2004–2007","interactions":[],"lastModifiedDate":"2016-06-13T12:57:44","indexId":"70173830","displayToPublicDate":"2016-06-13T14:00:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2675,"text":"Marine Ornithology: Journal of Seabird Research and Conservation","onlineIssn":"2074-1235","printIssn":"1018-3337","active":true,"publicationSubtype":{"id":10}},"title":"Ashy Storm-Petrel <i>Oceanodroma homochroa</i> mist-netting and capture rates in the California Channel Islands, 2004–2007","docAbstract":"<p>The California Channel Islands (CCI) provide essential nesting habitat for a significant portion of the world&rsquo;s Ashy Storm-Petrel Oceanodroma homochroa (ASSP) breeding population, but true abundance at this locality is not well known. Land-based nocturnal mistnetting has been conducted sporadically in the CCI since 1976, with variation in techniques and methods. Using a standardized catch-perunit-effort (CPUE) is one of the few methods available to monitor trends in relative abundance, but there currently are no guidelines for a standardized, repeatable approach for the CCI. During 2004&ndash;2007, I conducted mist-netting for ASSP at three colony sites within the CCI: Scorpion Rock (SR), Santa Barbara Island (SBI), and Prince Island (PI). During 47 site-nights (22 sessions), I obtained 1 177 unique captures, including 34 recaptures (2.9%) of previously banded individuals. ASSP captured at all three islands showed peak proportions of fully developed incubation patches in July and August. ASSP captured in the CCI had 5%&ndash;9% lower body mass than individuals captured off central California during the early 1970s; it is not known whether this difference reflects natural inter-annual variation or differences in body condition. ASSP from SBI had the lowest body condition index (BCI) compared with those from PI and SR, indicating different foraging environments. Overall, 22 netting-sessions at three islands yielded a power of 84% to detect a 30% lesser CPUE; 19 sessions would be required in a future effort to evaluate this level of change. Evaluation of additional factors that affect CPUE and other independent measures of abundance or attendance should be included in future mist-netting efforts.</p>","language":"English","publisher":"Marine Ornithology","usgsCitation":"Adams, J., 2016, Ashy Storm-Petrel <i>Oceanodroma homochroa</i> mist-netting and capture rates in the California Channel Islands, 2004–2007: Marine Ornithology: Journal of Seabird Research and Conservation, v. 44, no. 1, p. 71-82.","productDescription":"12 p.","startPage":"71","endPage":"82","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-070513","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":323485,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":323483,"type":{"id":15,"text":"Index Page"},"url":"https://www.marineornithology.org/cgi-bin/getpage.cgi?vol=current"}],"country":"United States","state":"California","otherGeospatial":"California Channel Islands, San Miguel Island, Santa Barbara Island, Santa Cruz Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -119.57450866699219,\n              34.01282694464169\n            ],\n            [\n              -119.57450866699219,\n              34.06801837800197\n            ],\n            [\n              -119.51545715332031,\n              34.06801837800197\n            ],\n            [\n              -119.51545715332031,\n              34.01282694464169\n            ],\n            [\n              -119.57450866699219,\n              34.01282694464169\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -119.05265808105469,\n              33.46152056457959\n            ],\n            [\n              -119.05265808105469,\n              33.49130304032286\n            ],\n            [\n              -119.02313232421874,\n              33.49130304032286\n            ],\n            [\n              -119.02313232421874,\n              33.46152056457959\n            ],\n            [\n              -119.05265808105469,\n              33.46152056457959\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -120.37857055664061,\n              34.04412546508576\n            ],\n            [\n              -120.37857055664061,\n              34.079109226606356\n            ],\n            [\n              -120.32758712768555,\n              34.079109226606356\n            ],\n            [\n              -120.32758712768555,\n              34.04412546508576\n            ],\n            [\n              -120.37857055664061,\n              34.04412546508576\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"44","issue":"1","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"575fcb1ce4b04f417c2b2667","contributors":{"authors":[{"text":"Adams, Josh 0000-0003-3056-925X josh_adams@usgs.gov","orcid":"https://orcid.org/0000-0003-3056-925X","contributorId":2422,"corporation":false,"usgs":true,"family":"Adams","given":"Josh","email":"josh_adams@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":638539,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70173764,"text":"70173764 - 2016 - A management-oriented framework for selecting metrics used to assess habitat- and path-specific quality in spatially structured populations","interactions":[],"lastModifiedDate":"2016-06-09T11:15:02","indexId":"70173764","displayToPublicDate":"2016-06-08T13:15:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1456,"text":"Ecological Indicators","active":true,"publicationSubtype":{"id":10}},"title":"A management-oriented framework for selecting metrics used to assess habitat- and path-specific quality in spatially structured populations","docAbstract":"<p>Mobile species with complex spatial dynamics can be difficult to manage because their population distributions vary across space and time, and because the consequences of managing particular habitats are uncertain when evaluated at the level of the entire population. Metrics to assess the importance of habitats and pathways connecting habitats in a network are necessary to guide a variety of management decisions. Given the many metrics developed for spatially structured models, it can be challenging to select the most appropriate one for a particular decision. To guide the management of spatially structured populations, we define three classes of metrics describing habitat and pathway quality based on their data requirements (graph-based, occupancy-based, and demographic-based metrics) and synopsize the ecological literature relating to these classes. Applying the first steps of a formal decision-making approach (problem framing, objectives, and management actions), we assess the utility of metrics for particular types of management decisions. Our framework can help managers with problem framing, choosing metrics of habitat and pathway quality, and to elucidate the data needs for a particular metric. Our goal is to help managers to narrow the range of suitable metrics for a management project, and aid in decision-making to make the best use of limited resources.</p>","language":"English","publisher":"Elsevier","usgsCitation":"Nicol, S., Wiederholt, R., Diffendorfer, J., Mattsson, B., Thogmartin, W.E., Semmens, D.J., Laura Lopez-Hoffman, and Norris, R., 2016, A management-oriented framework for selecting metrics used to assess habitat- and path-specific quality in spatially structured populations: Ecological Indicators, v. 69, p. 792-802.","productDescription":"10 p.","startPage":"792","endPage":"802","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-071948","costCenters":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"links":[{"id":323371,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":323299,"type":{"id":15,"text":"Index Page"},"url":"https://www.sciencedirect.com/science/article/pii/S1470160X1630262X"}],"volume":"69","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"575a932ee4b04f417c275118","contributors":{"authors":[{"text":"Nicol, Sam","contributorId":171610,"corporation":false,"usgs":false,"family":"Nicol","given":"Sam","email":"","affiliations":[{"id":26927,"text":"CSIRO, Australia","active":true,"usgs":false}],"preferred":false,"id":638088,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wiederholt, Ruscena","contributorId":171611,"corporation":false,"usgs":false,"family":"Wiederholt","given":"Ruscena","email":"","affiliations":[{"id":12738,"text":"U of Arizona, Tucson","active":true,"usgs":false}],"preferred":false,"id":638089,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Diffendorfer, James E. 0000-0003-1093-6948 jediffendorfer@usgs.gov","orcid":"https://orcid.org/0000-0003-1093-6948","contributorId":3208,"corporation":false,"usgs":true,"family":"Diffendorfer","given":"James E.","email":"jediffendorfer@usgs.gov","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true},{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":638087,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Mattsson, Brady J.","contributorId":171612,"corporation":false,"usgs":false,"family":"Mattsson","given":"Brady J.","affiliations":[{"id":26928,"text":"Univ. of Vienna","active":true,"usgs":false}],"preferred":false,"id":638090,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Thogmartin, Wayne E. 0000-0002-2384-4279 wthogmartin@usgs.gov","orcid":"https://orcid.org/0000-0002-2384-4279","contributorId":2545,"corporation":false,"usgs":true,"family":"Thogmartin","given":"Wayne","email":"wthogmartin@usgs.gov","middleInitial":"E.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":638091,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Semmens, Darius J. 0000-0001-7924-6529 dsemmens@usgs.gov","orcid":"https://orcid.org/0000-0001-7924-6529","contributorId":1714,"corporation":false,"usgs":true,"family":"Semmens","given":"Darius","email":"dsemmens@usgs.gov","middleInitial":"J.","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":638092,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Laura Lopez-Hoffman","contributorId":171613,"corporation":false,"usgs":false,"family":"Laura Lopez-Hoffman","affiliations":[{"id":12738,"text":"U of Arizona, Tucson","active":true,"usgs":false}],"preferred":false,"id":638093,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Norris, Ryan","contributorId":171614,"corporation":false,"usgs":false,"family":"Norris","given":"Ryan","affiliations":[{"id":12660,"text":"University of Guelph","active":true,"usgs":false}],"preferred":false,"id":638094,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70174236,"text":"70174236 - 2016 - Post-release survival and movement of Western Grebes (<i>Aechmophorus occidentalis</i>) implanted with intracoelomic satellite transmitters","interactions":[],"lastModifiedDate":"2017-10-30T09:48:35","indexId":"70174236","displayToPublicDate":"2016-06-08T06:30:00","publicationYear":"2016","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3731,"text":"Waterbirds","onlineIssn":"19385390","printIssn":"15244695","active":true,"publicationSubtype":{"id":10}},"title":"Post-release survival and movement of Western Grebes (<i>Aechmophorus occidentalis</i>) implanted with intracoelomic satellite transmitters","docAbstract":"<p>The main goal of this study was to gain knowledge on post-release survival and movement of Western Grebes (<i>Aechmophorus occidentalis</i>) using a modified technique for implanting satellite transmitters. This technique had improved post-surgical survival in an earlier study. Nine Western Grebes, implanted with intracoelomic (within the body cavity) satellite transmitters with percutaneous antennae, were released close to their capture site in San Francisco Bay, California, USA. Eight survived at least 25 days (average number of transmittal days was 140.8), while two had transmitters that provided data for greater than 1 year (436 and 454 days). The average cumulative distance recorded for all Western Grebes (<i>n</i> = 9) was 829 km with two round-trip movements documented. One individual Western Grebe traveled a cumulative round-trip distance of 2,144 km in July and November 2011, while another individual traveled a round-trip distance of 1,514 km between 8 and 14 December 2011. This study provides a step forward in testing implantable satellite transmitters in Western Grebes and highlights the need to further improve tracking methods, potentially improving our understanding of their population threats.</p>","language":"English","publisher":"Waterbird Society","doi":"10.1675/063.039.0208","usgsCitation":"Mills, K.L., Gaydos, J.K., Fiorello, C.V., Whitmer, E., De La Cruz, S., Mulcahy, D.M., Vilchis, L.I., and Ziccardi, M.H., 2016, Post-release survival and movement of Western Grebes (<i>Aechmophorus occidentalis</i>) implanted with intracoelomic satellite transmitters: Waterbirds, v. 39, no. 2, p. 175-186, https://doi.org/10.1675/063.039.0208.","productDescription":"12 p.","startPage":"175","endPage":"186","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-051534","costCenters":[{"id":552,"text":"San Francisco Bay-Delta","active":false,"usgs":true},{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":324763,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California, Oregon","otherGeospatial":"Clear Lake, Drews Reservoir, San Francisco Bay, Upper Klamath Lake","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -124.07958984375001,\n              32.602361666817515\n            ],\n            [\n              -124.07958984375001,\n              43.24520272203359\n            ],\n            [\n              -116.3232421875,\n              43.24520272203359\n            ],\n            [\n              -116.3232421875,\n              32.602361666817515\n            ],\n            [\n              -124.07958984375001,\n              32.602361666817515\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"39","issue":"2","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"577e2bb1e4b0ef4d2f445a36","contributors":{"authors":[{"text":"Mills, Kyra L.","contributorId":172677,"corporation":false,"usgs":false,"family":"Mills","given":"Kyra","email":"","middleInitial":"L.","affiliations":[{"id":27076,"text":"Oiled Wildlife Care Network, UC Davis","active":true,"usgs":false}],"preferred":false,"id":641545,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Gaydos, Joseph K.","contributorId":28456,"corporation":false,"usgs":true,"family":"Gaydos","given":"Joseph","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":641546,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fiorello, Christine V.","contributorId":172678,"corporation":false,"usgs":false,"family":"Fiorello","given":"Christine","email":"","middleInitial":"V.","affiliations":[{"id":27076,"text":"Oiled Wildlife Care Network, UC Davis","active":true,"usgs":false}],"preferred":false,"id":641547,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Whitmer, Emily","contributorId":172679,"corporation":false,"usgs":false,"family":"Whitmer","given":"Emily","email":"","affiliations":[{"id":27076,"text":"Oiled Wildlife Care Network, UC Davis","active":true,"usgs":false}],"preferred":false,"id":641548,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"De La Cruz, Susan sdelacruz@usgs.gov","contributorId":131159,"corporation":false,"usgs":true,"family":"De La Cruz","given":"Susan","email":"sdelacruz@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":641549,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Mulcahy, Daniel M. dmulcahy@usgs.gov","contributorId":3102,"corporation":false,"usgs":true,"family":"Mulcahy","given":"Daniel","email":"dmulcahy@usgs.gov","middleInitial":"M.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":641550,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Vilchis, L. 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