{"pageNumber":"1605","pageRowStart":"40100","pageSize":"25","recordCount":184582,"records":[{"id":70040464,"text":"ds722 - 2012 - Archive of single-beam bathymetry data collected during USGS cruise 07CCT01 nearshore of Fort Massachusetts and within Camille Cut, West and East Ship Islands, Gulf Islands National Seashore, Mississippi, July 2007","interactions":[],"lastModifiedDate":"2023-04-05T15:33:30.865762","indexId":"ds722","displayToPublicDate":"2012-10-23T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":310,"text":"Data Series","code":"DS","onlineIssn":"2327-638X","printIssn":"2327-0271","active":false,"publicationSubtype":{"id":5}},"seriesNumber":"722","title":"Archive of single-beam bathymetry data collected during USGS cruise 07CCT01 nearshore of Fort Massachusetts and within Camille Cut, West and East Ship Islands, Gulf Islands National Seashore, Mississippi, July 2007","docAbstract":"The Gulf Islands National Seashore (GUIS) is composed of a series of barrier islands along the Mississippi - Alabama coastline. Historically these islands have undergone long-term shoreline change. The devastation of Hurricane Katrina in 2005 prompted questions about the stability of the barrier islands and their potential response to future storm impacts. Additionally, there was concern from the National Park Service (NPS) about the preservation of the historical Fort Massachusetts, located on West Ship Island. During the early 1900s, Ship Island was an individual island. In 1969 Hurricane Camille breached Ship Island, widening the cut and splitting it into what is now known as West Ship Island and East Ship Island. In July of 2007, the U.S. Geological Survey (USGS) was able to provide the NPS with a small bathymetric survey of Camille Cut using high-resolution single-beam bathymetry. This provided GUIS with a post-Katrina assessment of the bathymetry in Camille Cut and along the northern shoreline directly in front of Fort Massachusetts. Ultimately, this survey became an initial bathymetry dataset toward a larger USGS effort included in the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility Project (<a href=\"http://ngom.usgs.gov/gomsc/mscip/\">http://ngom.usgs.gov/gomsc/mscip/</a>). This report serves as an archive of the processed single-beam bathymetry. Data products herein include gridded and interpolated digital depth surfaces and x,y,z data products. Additional files include trackline maps, navigation files, geographic information system (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Scanned images of the <a href=\"http://pubs.usgs.gov/ds/722/facs/handwritten/\">handwritten FACS logs</a> and <a href=\"http://pubs.usgs.gov/ds/722/facs/digital/\">digital FACS logs</a> are also provided as PDF files. Refer to the <a href=\"http://pubs.usgs.gov/ds/722/html/acronyms.html\">Acronyms</a> page for description of acronyms and abbreviations used in this report or hold the cursor over an acronym for a pop-up explanation. The USGS St. Petersburg Coastal and Marine Science Center assigns a unique identifier to each cruise or field activity. For example, 07CCT01 tells us the data were collected in 2007 for the Coastal Change and Transport (CCT) study and the data were collected during the first (01) field activity for that project in that calendar year. Refer to <a href=\"http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html\"> http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html</a> for a detailed description of the method used to assign the field activity ID. Data were collected using a 26-foot (ft) Glacier Bay catamaran. The single-beam transducers were sled mounted on a rail attached between the catamaran hulls. Navigation was acquired using HYPACK, Inc., Hypack version 4.3a.7.1 and differentially corrected using land-based GPS stations. See the digital FACS equipment log for details about the acquisition equipment used. Raw datasets were stored digitally and processed systematically using NovAtel's Waypoint GrafNav version 7.6, SANDS version 3.7, and ESRI ArcGIS version 9.3.1. For more information on processing refer to the <a href=\"http://pubs.usgs.gov/ds/722/html/equipment_processing.html\">Equipment and Processing</a> page.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ds722","usgsCitation":"DeWitt, N.T., Flocks, J.G., Reynolds, B., and Hansen, M., 2012, Archive of single-beam bathymetry data collected during USGS cruise 07CCT01 nearshore of Fort Massachusetts and within Camille Cut, West and East Ship Islands, Gulf Islands National Seashore, Mississippi, July 2007: U.S. Geological Survey Data Series 722, HTML Document, https://doi.org/10.3133/ds722.","productDescription":"HTML Document","additionalOnlineFiles":"Y","costCenters":[{"id":187,"text":"Coastal and Marine Science Center","active":false,"usgs":true}],"links":[{"id":262768,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ds_722.jpg"},{"id":262767,"rank":3,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/ds/722/html/","linkFileType":{"id":5,"text":"html"}},{"id":262766,"rank":2,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/ds/722/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Mississippi","city":"Fort Massachusetts","otherGeospatial":"Camille Cut, Gulf Islands National Seashore, West And East Ship Islands","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -89,\n              30.2\n            ],\n            [\n              -89,\n              30.25\n            ],\n            [\n              -88.883333,\n              30.25\n            ],\n            [\n              -88.883333,\n              30.2\n            ],\n            [\n              -89,\n              30.2\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"508844e7e4b0a0cec3e5b5b5","contributors":{"authors":[{"text":"DeWitt, Nancy T. 0000-0002-2419-4087 ndewitt@usgs.gov","orcid":"https://orcid.org/0000-0002-2419-4087","contributorId":4095,"corporation":false,"usgs":true,"family":"DeWitt","given":"Nancy","email":"ndewitt@usgs.gov","middleInitial":"T.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true},{"id":186,"text":"Coastal and Marine Geology Program","active":true,"usgs":true}],"preferred":true,"id":468381,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Flocks, James G. 0000-0002-6177-7433 jflocks@usgs.gov","orcid":"https://orcid.org/0000-0002-6177-7433","contributorId":816,"corporation":false,"usgs":true,"family":"Flocks","given":"James","email":"jflocks@usgs.gov","middleInitial":"G.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":468380,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Reynolds, B.J.","contributorId":47874,"corporation":false,"usgs":true,"family":"Reynolds","given":"B.J.","email":"","affiliations":[],"preferred":false,"id":468382,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hansen, Mark","contributorId":81893,"corporation":false,"usgs":true,"family":"Hansen","given":"Mark","affiliations":[],"preferred":false,"id":468383,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70007189,"text":"fs20123001 - 2012 - Decision-support systems for natural-hazards and land-management issues","interactions":[],"lastModifiedDate":"2012-10-23T17:16:13","indexId":"fs20123001","displayToPublicDate":"2012-10-23T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2012-3001","title":"Decision-support systems for natural-hazards and land-management issues","docAbstract":"Scientists at the USGS Western Geographic Science Center are developing decision-support systems (DSSs) for natural-hazards and land-management issues. DSSs are interactive computer-based tools that use data and models to help identify and solve problems. These systems can provide crucial support to policymakers, planners, and communities for making better decisions about long-term natural hazards mitigation and land-use planning.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20123001","collaboration":"Research at the USGS Western Geographic Science Center","usgsCitation":"Dinitz, L., Forney, W., and Byrd, K., 2012, Decision-support systems for natural-hazards and land-management issues: U.S. Geological Survey Fact Sheet 2012-3001, 2 p., https://doi.org/10.3133/fs20123001.","productDescription":"2 p.","numberOfPages":"2","costCenters":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"links":[{"id":262763,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/fs_2012_3001.gif"},{"id":116370,"rank":0,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/fs/2012/3001/","linkFileType":{"id":5,"text":"html"}},{"id":262762,"rank":300,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/fs/2012/3001/fs2012-3001.pdf","linkFileType":{"id":1,"text":"pdf"}}],"country":"United States","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"508844f8e4b0a0cec3e5b5bd","contributors":{"authors":[{"text":"Dinitz, Laura","contributorId":52330,"corporation":false,"usgs":true,"family":"Dinitz","given":"Laura","affiliations":[],"preferred":false,"id":356032,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Forney, William","contributorId":23509,"corporation":false,"usgs":true,"family":"Forney","given":"William","affiliations":[],"preferred":false,"id":356031,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Byrd, Kristin","contributorId":82053,"corporation":false,"usgs":true,"family":"Byrd","given":"Kristin","affiliations":[],"preferred":false,"id":356033,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040448,"text":"sir20125081 - 2012 - South Fork Shenandoah River habitat-flow modeling to determine ecological and recreational characteristics during low-flow periods","interactions":[],"lastModifiedDate":"2012-10-22T17:16:26","indexId":"sir20125081","displayToPublicDate":"2012-10-22T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2012-5081","title":"South Fork Shenandoah River habitat-flow modeling to determine ecological and recreational characteristics during low-flow periods","docAbstract":"The ecological habitat requirements of aquatic organisms and recreational streamflow requirements of the South Fork Shenandoah River were investigated by the U.S. Geological Survey in cooperation with the Central Shenandoah Valley Planning District Commission, the Northern Shenandoah Valley Regional Commission, and Virginia Commonwealth University. Physical habitat simulation modeling was conducted to examine flow as a major determinant of physical habitat availability and recreation suitability using field-collected hydraulic habitat variables such as water depth, water velocity, and substrate characteristics. Fish habitat-suitability criteria specific to the South Fork Shenandoah River were developed for sub-adult and adult smallmouth bass (Micropterus dolomieu), juvenile and sub-adult redbreast sunfish (Lepomis auritus), spotfin or satinfin shiner (Cyprinella spp), margined madtom (Noturus insignis),and river chub (Nocomis micropogon). Historic streamflow statistics for the summer low-flow period during July, August, and September were used as benchmark low-flow conditions and compared to habitat simulation results and water-withdrawal scenarios based on 2005 withdrawal data. \r\nTo examine habitat and recreation characteristics during droughts, daily fish habitat or recreation suitability values were simulated for 2002 and other selected drought years. Recreation suitability during droughts was extremely low, because the modeling demonstrated that suitable conditions occur when the streamflows are greater than the 50th percentile flow for July, August, and September. Habitat availability for fish is generally at a maximum when streamflows are between the 75th and 25th percentile flows for July, August, and September. Time-series results for drought years, such as 2002, showed that extreme low-flow conditions less than the 5th percentile of flow for July, August, and September corresponded to below-normal habitat availability for both game and nongame fish in the upper section of the river. For the middle section near Luray, margined madtom and river chub habitat area were below normal, whereas adult and sub-adult smallmouth bass habitat area remained near the median expected available habitat. In the lower section near Front Royal, time-series results for adult smallmouth bass, sub-adult smallmouth bass, and margined madtom habitat were below normal when streamflows were below the 10th percentile flow for July, August, and September. All other species of fish had habitat availability within the normal range for July, August, and September. \r\nWater-conservation scenarios representing a 50 percent water-withdrawal reduction resulted in game fish habitat availability within the normal range for habitat in upper and middle river sections, instead of below normal conditions which were observed during the 2002 drought. The 50 percent water-withdrawal reduction had no measurable effect on recreation. For nongame fish such as river chub, a 20 percent withdrawal reduction resulted in habitat availability within the normal range for habitat in the upper and middle river sections. Increased water-use scenarios representing a 5 percent increase in water withdrawals resulted in a slight reduction in habitat availability; however, increased withdrawals of 20 and 50 percent resulted in habitat availability substantially less than the 25th habitat percentile, or below normal. Habitat reductions were more pronounced when flows were lower than the 10th percentile flow for July, August, and September. \r\nThe results show that for normal or wet years, increased water withdrawals are not likely to correspond with extensive habitat loss for game fish or nongame fish. During drought years, however, a 20 to 50 percent increase in water withdrawals may result in below normal habitat availability for game fish throughout the river and nongame fish in the upper and middle sections of the river. These simulations of rare historic drought conditions, such as those observed in 2002, serve as a baseline for development of ecological flow thresholds for drought planning.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20125081","collaboration":"Prepared in cooperation with the Northern Shenandoah Valley Regional Commission, Central Shenandoah Valley Planning District Commission, and Virginia Commonwealth University","usgsCitation":"Krstolic, J.L., and Ramey, R.C., 2012, South Fork Shenandoah River habitat-flow modeling to determine ecological and recreational characteristics during low-flow periods: U.S. Geological Survey Scientific Investigations Report 2012-5081, x, 63 p., https://doi.org/10.3133/sir20125081.","productDescription":"x, 63 p.","numberOfPages":"78","costCenters":[{"id":614,"text":"Virginia Water Science Center","active":true,"usgs":true}],"links":[{"id":262752,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2012_5081.gif"},{"id":262743,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2012/5081/","linkFileType":{"id":5,"text":"html"}},{"id":262744,"rank":300,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2012/5081/pdf/sir2012-5081.pdf","linkFileType":{"id":1,"text":"pdf"}}],"country":"United States","state":"Virginia;West Virginia","county":"Augusta","city":"Lynwood;Front Royal;Luray","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -79.4652,37.8018 ], [ -79.4652,39.5081 ], [ -77.7355,39.5081 ], [ -77.7355,37.8018 ], [ -79.4652,37.8018 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"50866d1be4b0a1435286d65a","contributors":{"authors":[{"text":"Krstolic, Jennifer L. 0000-0003-2253-9886 jkrstoli@usgs.gov","orcid":"https://orcid.org/0000-0003-2253-9886","contributorId":3677,"corporation":false,"usgs":true,"family":"Krstolic","given":"Jennifer","email":"jkrstoli@usgs.gov","middleInitial":"L.","affiliations":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true},{"id":614,"text":"Virginia Water Science Center","active":true,"usgs":true}],"preferred":true,"id":468341,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ramey, R. Clay","contributorId":98161,"corporation":false,"usgs":true,"family":"Ramey","given":"R.","email":"","middleInitial":"Clay","affiliations":[],"preferred":false,"id":468342,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70040186,"text":"70040186 - 2012 - Geomyces destructans -- White-nose syndrome in hibernating bats","interactions":[],"lastModifiedDate":"2023-10-17T10:54:30.22832","indexId":"70040186","displayToPublicDate":"2012-10-22T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Geomyces destructans -- White-nose syndrome in hibernating bats","docAbstract":"<p>No abstract available.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Infectious diseases of wild mammals and birds in Europe","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Wiley-Blackwell","publisherLocation":"Hoboken, NJ","doi":"10.1002/9781118342442.ch40","usgsCitation":"Meteyer, C.U., and Wibbelt, G., 2012, Geomyces destructans -- White-nose syndrome in hibernating bats, chap. <i>of</i> Infectious diseases of wild mammals and birds in Europe, p. 473-475, https://doi.org/10.1002/9781118342442.ch40.","productDescription":"3 p.","startPage":"473","endPage":"475","ipdsId":"IP-025540","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":262750,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States;Canada;Belgium;Czech Republic;Estonia;France;Germany;Hungary;Poland;Switzerland;Slovakia;The Netherlands;Ukraine","otherGeospatial":"Europe;North America","noUsgsAuthors":false,"publicationDate":"2012-07-30","publicationStatus":"PW","scienceBaseUri":"50866d13e4b0a1435286d656","contributors":{"editors":[{"text":"Gavier-Widen, Dolores","contributorId":112623,"corporation":false,"usgs":true,"family":"Gavier-Widen","given":"Dolores","email":"","affiliations":[],"preferred":false,"id":509057,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Duff, J. Paul","contributorId":113593,"corporation":false,"usgs":true,"family":"Duff","given":"J.","email":"","middleInitial":"Paul","affiliations":[],"preferred":false,"id":509058,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Meredith, Anna","contributorId":114018,"corporation":false,"usgs":true,"family":"Meredith","given":"Anna","email":"","affiliations":[],"preferred":false,"id":509059,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Meteyer, Carol U. 0000-0002-4007-3410 cmeteyer@usgs.gov","orcid":"https://orcid.org/0000-0002-4007-3410","contributorId":111,"corporation":false,"usgs":true,"family":"Meteyer","given":"Carol","email":"cmeteyer@usgs.gov","middleInitial":"U.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":false,"id":467840,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wibbelt, Gudrun","contributorId":72640,"corporation":false,"usgs":true,"family":"Wibbelt","given":"Gudrun","affiliations":[],"preferred":false,"id":467841,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70038540,"text":"70038540 - 2012 - Techniques for determining the food habits of sirenians","interactions":[],"lastModifiedDate":"2012-10-30T16:17:44","indexId":"70038540","displayToPublicDate":"2012-10-22T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Techniques for determining the food habits of sirenians","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Sirenian conservation: Issues and strategies in developing countries","largerWorkSubtype":{"id":4,"text":"Other Government Series"},"language":"English","publisher":"University Press of Florida","publisherLocation":"Gainesville, FL","usgsCitation":"Beck, C.A., and Clementz, M.T., 2012, Techniques for determining the food habits of sirenians, chap. <i>of</i> Sirenian conservation: Issues and strategies in developing countries, p. 126-132.","productDescription":"Chapter 14: 7 p.","startPage":"126","endPage":"132","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262749,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262747,"rank":9999,"type":{"id":1,"text":"Abstract"},"url":"https://www.upf.com/book.asp?id=HINESS08","linkFileType":{"id":5,"text":"html"}}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"50866d38e4b0a1435286d666","contributors":{"editors":[{"text":"Hines, Ellen","contributorId":111908,"corporation":false,"usgs":true,"family":"Hines","given":"Ellen","affiliations":[],"preferred":false,"id":508979,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Reynolds, John E. III","contributorId":72515,"corporation":false,"usgs":true,"family":"Reynolds","given":"John E.","suffix":"III","affiliations":[],"preferred":false,"id":508977,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Aragones, Lemnuel","contributorId":112045,"corporation":false,"usgs":true,"family":"Aragones","given":"Lemnuel","affiliations":[],"preferred":false,"id":508980,"contributorType":{"id":2,"text":"Editors"},"rank":3},{"text":"Mignucci-Giannoni, Antonio","contributorId":82201,"corporation":false,"usgs":true,"family":"Mignucci-Giannoni","given":"Antonio","affiliations":[],"preferred":false,"id":508978,"contributorType":{"id":2,"text":"Editors"},"rank":4},{"text":"Marmontel, Miriam","contributorId":66950,"corporation":false,"usgs":true,"family":"Marmontel","given":"Miriam","email":"","affiliations":[],"preferred":false,"id":508976,"contributorType":{"id":2,"text":"Editors"},"rank":5}],"authors":[{"text":"Beck, Cathy A. 0000-0002-5388-5418 cbeck@usgs.gov","orcid":"https://orcid.org/0000-0002-5388-5418","contributorId":2919,"corporation":false,"usgs":true,"family":"Beck","given":"Cathy","email":"cbeck@usgs.gov","middleInitial":"A.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":false,"id":464531,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Clementz, Mark T.","contributorId":67348,"corporation":false,"usgs":true,"family":"Clementz","given":"Mark","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":464532,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70038541,"text":"70038541 - 2012 - Tagging and movement of sirenians","interactions":[],"lastModifiedDate":"2012-10-30T16:17:44","indexId":"70038541","displayToPublicDate":"2012-10-22T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Tagging and movement of sirenians","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Sirenian conservation: Issues and strategies in developing countries","largerWorkSubtype":{"id":4,"text":"Other Government Series"},"language":"English","publisher":"University Press of Florida","publisherLocation":"Gainesville, FL","usgsCitation":"Marmontel, M., Reid, J., Sheppard, J.K., and Morales-Vela, B., 2012, Tagging and movement of sirenians, chap. <i>of</i> Sirenian conservation: Issues and strategies in developing countries, p. 116-125.","productDescription":"Chapter 13: 10 p.","startPage":"116","endPage":"125","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262754,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262753,"rank":9999,"type":{"id":1,"text":"Abstract"},"url":"https://www.upf.com/book.asp?id=HINESS08","linkFileType":{"id":5,"text":"html"}}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"50866d30e4b0a1435286d662","contributors":{"editors":[{"text":"Hines, Ellen","contributorId":111908,"corporation":false,"usgs":true,"family":"Hines","given":"Ellen","affiliations":[],"preferred":false,"id":508984,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Reynolds, John E. III","contributorId":72515,"corporation":false,"usgs":true,"family":"Reynolds","given":"John E.","suffix":"III","affiliations":[],"preferred":false,"id":508982,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Aragones, Lemnuel","contributorId":112045,"corporation":false,"usgs":true,"family":"Aragones","given":"Lemnuel","affiliations":[],"preferred":false,"id":508985,"contributorType":{"id":2,"text":"Editors"},"rank":3},{"text":"Mignucci-Giannoni, Antonio","contributorId":82201,"corporation":false,"usgs":true,"family":"Mignucci-Giannoni","given":"Antonio","affiliations":[],"preferred":false,"id":508983,"contributorType":{"id":2,"text":"Editors"},"rank":4},{"text":"Marmontel, Miriam","contributorId":66950,"corporation":false,"usgs":true,"family":"Marmontel","given":"Miriam","email":"","affiliations":[],"preferred":false,"id":508981,"contributorType":{"id":2,"text":"Editors"},"rank":5}],"authors":[{"text":"Marmontel, Miriam","contributorId":66950,"corporation":false,"usgs":true,"family":"Marmontel","given":"Miriam","email":"","affiliations":[],"preferred":false,"id":464535,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Reid, James","contributorId":13749,"corporation":false,"usgs":true,"family":"Reid","given":"James","affiliations":[],"preferred":false,"id":464533,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sheppard, James K.","contributorId":76982,"corporation":false,"usgs":true,"family":"Sheppard","given":"James","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":464536,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Morales-Vela, Benjamin","contributorId":30495,"corporation":false,"usgs":false,"family":"Morales-Vela","given":"Benjamin","email":"","affiliations":[{"id":13524,"text":"El Colegio de la Frontera Sur, Quintana Roo, Mexico","active":true,"usgs":false}],"preferred":false,"id":464534,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70046829,"text":"70046829 - 2012 - Coupling at Mauna Loa and Kīlauea by stress transfer in an asthenospheric melt layer","interactions":[],"lastModifiedDate":"2020-07-28T15:45:39.077183","indexId":"70046829","displayToPublicDate":"2012-10-21T11:34:33","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2845,"text":"Nature Geoscience","active":true,"publicationSubtype":{"id":10}},"title":"Coupling at Mauna Loa and Kīlauea by stress transfer in an asthenospheric melt layer","docAbstract":"The eruptive activity at the neighbouring Hawaiian volcanoes, Kīlauea and Mauna Loa, is thought to be linked despite both having separate lithospheric magmatic plumbing systems. Over the past century, activity at the two volcanoes has been anti-correlated, which could reflect a competition for the same magma supply. Yet, during the past decade Kīlauea and Mauna Loa have inflated simultaneously. Linked activity between adjacent volcanoes in general remains controversial. Here we present a numerical model for the dynamical interaction between Kīlauea and Mauna Loa, where both volcanoes are coupled by pore-pressure diffusion, occurring within a common, asthenospheric magma supply system. The model is constrained by measurements of gas emission rates indicative of eruptive activity, and it is calibrated to match geodetic measurements of surface deformation at both volcanoes, inferred to reflect changes in shallow magma storage. Although an increase in the asthenospheric magma supply can cause simultaneous inflation of Kīlauea and Mauna Loa, we find that eruptive activity at one volcano may inhibit eruptions of the adjacent volcano, if there is no concurrent increase in magma supply. We conclude that dynamic stress transfer by asthenospheric pore pressure is a viable mechanism for volcano coupling at Hawai‘i, and perhaps for adjacent volcanoes elsewhere.","language":"English","publisher":"Nature Publishing Group","doi":"10.1038/ngeo1612","usgsCitation":"Gonnermann, H.M., Foster, J.H., Poland, M., Wolfe, C.J., Brooks, B.A., and Miklius, A., 2012, Coupling at Mauna Loa and Kīlauea by stress transfer in an asthenospheric melt layer: Nature Geoscience, v. 5, p. 826-829, https://doi.org/10.1038/ngeo1612.","productDescription":"4 p.","startPage":"826","endPage":"829","ipdsId":"IP-031796","costCenters":[{"id":336,"text":"Hawaiian Volcano Observatory","active":false,"usgs":true},{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true}],"links":[{"id":274916,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Hawai'i","otherGeospatial":"Kīlauea and Mauna Loa","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -156.68701171875,\n              18.750309813140653\n            ],\n            [\n              -154.1162109375,\n              18.750309813140653\n            ],\n            [\n              -154.1162109375,\n              20.46818922264095\n            ],\n            [\n              -156.68701171875,\n              20.46818922264095\n            ],\n            [\n              -156.68701171875,\n              18.750309813140653\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"5","noUsgsAuthors":false,"publicationDate":"2012-10-21","publicationStatus":"PW","scienceBaseUri":"51e12563e4b02f5cae2b7372","contributors":{"authors":[{"text":"Gonnermann, Helge M.","contributorId":48465,"corporation":false,"usgs":false,"family":"Gonnermann","given":"Helge","email":"","middleInitial":"M.","affiliations":[{"id":35613,"text":"Department of Earth Science, Rice University, Houston, TX 77005","active":true,"usgs":false}],"preferred":false,"id":480397,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Foster, James H.","contributorId":107993,"corporation":false,"usgs":true,"family":"Foster","given":"James","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":480398,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Poland, Michael 0000-0001-5240-6123","orcid":"https://orcid.org/0000-0001-5240-6123","contributorId":47044,"corporation":false,"usgs":true,"family":"Poland","given":"Michael","affiliations":[],"preferred":false,"id":480396,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Wolfe, Cecily J.","contributorId":29294,"corporation":false,"usgs":true,"family":"Wolfe","given":"Cecily","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":480395,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Brooks, Benjamin A. 0000-0001-7954-6281 bbrooks@usgs.gov","orcid":"https://orcid.org/0000-0001-7954-6281","contributorId":5237,"corporation":false,"usgs":true,"family":"Brooks","given":"Benjamin","email":"bbrooks@usgs.gov","middleInitial":"A.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":480394,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Miklius, Asta 0000-0002-2286-1886","orcid":"https://orcid.org/0000-0002-2286-1886","contributorId":215615,"corporation":false,"usgs":true,"family":"Miklius","given":"Asta","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":480393,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70173604,"text":"70173604 - 2012 - Summer temperature metrics for predicting brook trout (Salvelinus fontinalis) distribution in streams","interactions":[],"lastModifiedDate":"2016-06-09T15:03:20","indexId":"70173604","displayToPublicDate":"2012-10-20T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1919,"text":"Hydrobiologia","onlineIssn":"1573-5117","printIssn":"0018-8158","active":true,"publicationSubtype":{"id":10}},"title":"Summer temperature metrics for predicting brook trout (Salvelinus fontinalis) distribution in streams","docAbstract":"<p><span>We developed a methodology to predict brook trout (</span><i class=\"EmphasisTypeItalic \">Salvelinus fontinalis</i><span>) distribution using summer temperature metrics as predictor variables. Our analysis used long-term fish and hourly water temperature data from the Dog River, Vermont (USA). Commonly used metrics (e.g., mean, maximum, maximum 7-day maximum) tend to smooth the data so information on temperature variation is lost. Therefore, we developed a new set of metrics (called event metrics) to capture temperature variation by describing the frequency, area, duration, and magnitude of events that exceeded a user-defined temperature threshold. We used 16, 18, 20, and 22&deg;C. We built linear discriminant models and tested and compared the event metrics against the commonly used metrics. Correct classification of the observations was 66% with event metrics and 87% with commonly used metrics. However, combined event and commonly used metrics correctly classified 92%. Of the four individual temperature thresholds, it was difficult to assess which threshold had the &ldquo;best&rdquo; accuracy. The 16&deg;C threshold had slightly fewer misclassifications; however, the 20&deg;C threshold had the fewest extreme misclassifications. Our method leveraged the volumes of existing long-term data and provided a simple, systematic, and adaptable framework for monitoring changes in fish distribution, specifically in the case of irregular, extreme temperature events.</span></p>","language":"English","publisher":"Springer Netherlands","doi":"10.1007/s10750-012-1336-1","usgsCitation":"Parrish, D.L., Butryn, R.S., and Rizzo, D.M., 2012, Summer temperature metrics for predicting brook trout (Salvelinus fontinalis) distribution in streams: Hydrobiologia, v. 703, no. 1, p. 47-57, https://doi.org/10.1007/s10750-012-1336-1.","productDescription":"11 p.","startPage":"47","endPage":"57","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-024699","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":323409,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"703","issue":"1","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2012-10-20","publicationStatus":"PW","scienceBaseUri":"575a9337e4b04f417c27518a","contributors":{"authors":[{"text":"Parrish, Donna L. 0000-0001-9693-6329 dparrish@usgs.gov","orcid":"https://orcid.org/0000-0001-9693-6329","contributorId":138661,"corporation":false,"usgs":true,"family":"Parrish","given":"Donna","email":"dparrish@usgs.gov","middleInitial":"L.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":637393,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Butryn, Ryan S.","contributorId":87042,"corporation":false,"usgs":true,"family":"Butryn","given":"Ryan","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":638286,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rizzo, Donna M.","contributorId":171679,"corporation":false,"usgs":false,"family":"Rizzo","given":"Donna","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":638287,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040432,"text":"sir20105090E - 2012 - Sandstone copper assessment of the Chu-Sarysu Basin, Central Kazakhstan: Chapter E in <i>Global mineral resource assessment</i>","interactions":[{"subject":{"id":70040432,"text":"sir20105090E - 2012 - Sandstone copper assessment of the Chu-Sarysu Basin, Central Kazakhstan: Chapter E in <i>Global mineral resource assessment</i>","indexId":"sir20105090E","publicationYear":"2012","noYear":false,"chapter":"E","title":"Sandstone copper assessment of the Chu-Sarysu Basin, Central Kazakhstan: Chapter E in <i>Global mineral resource assessment</i>"},"predicate":"IS_PART_OF","object":{"id":70040436,"text":"sir20105090 - 2010 - Global mineral resource assessment","indexId":"sir20105090","publicationYear":"2010","noYear":false,"title":"Global mineral resource assessment"},"id":1}],"isPartOf":{"id":70040436,"text":"sir20105090 - 2010 - Global mineral resource assessment","indexId":"sir20105090","publicationYear":"2010","noYear":false,"title":"Global mineral resource assessment"},"lastModifiedDate":"2015-06-19T11:13:59","indexId":"sir20105090E","displayToPublicDate":"2012-10-19T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2010-5090","chapter":"E","title":"Sandstone copper assessment of the Chu-Sarysu Basin, Central Kazakhstan: Chapter E in <i>Global mineral resource assessment</i>","docAbstract":"<p>Mineral resource assessments represent a synthesis of available information to estimate the location, quality, and quantity of undiscovered mineral resources in the upper part of the Earth&rsquo;s crust. This report presents a probabilistic mineral resource assessment of undiscovered sandstone copper deposits within the late Paleozoic Chu-Sarysu Basin in central Kazakhstan by the U.S. Geological Survey as a contribution to a global assessment of mineral resources. The purposes of this study are to: (1) provide a database of known sandstone copper deposits and significant prospects in this area, (2) delineate permissive areas (tracts) for undiscovered sandstone copper deposits within 2 km of the surface at a scale of 1:1,000,000, (3) estimate numbers of undiscovered deposits within these permissive tracts at several levels of confidence, and (4) provide probabilistic estimates of amounts of copper (Cu), silver (Ag), and mineralized rock that could be contained in undiscovered deposits within each tract. The assessment uses the three-part form of mineral resource assessment based on mineral deposit models (Singer, 1993; Singer and Menzie, 2010).</p>\n<p>Delineation of permissive tracts for resources is based on the distribution of a Carboniferous oxidized nonmarine clastic (red bed) stratigraphic sequence that lies between overlying Permian and underlying Devonian evaporite-bearing sequences. Subsurface information on the extent and depth of this red bed sequence and structural features that divide the basin into sub-basins was used to define four permissive tracts. Structure contour maps, mineral occurrence databases, drill hole lithologic logs, geophysical maps, soil geochemical maps, locations of producing gas fields, and evidence for former gas accumulations were considered in conjunction with descriptive deposit models and grade and tonnage models to guide the assessment team&rsquo;s estimates of undiscovered deposits in each tract.</p>\n<p>The four permissive tracts are structural sub-basins of the Chu-Sarysu Basin and range in size from 750 to 65,000 km&sup2;. Probabilistic estimates of numbers of undiscovered sandstone copper deposits were made for the four tracts by a group of experts. Using these probabilistic estimates, Monte Carlo simulation was used to estimate the amount of metal contained within each tract. The results of the simulation serve as the basis for estimates of the metal endowment.</p>\n<p>The team estimates that 26 undiscovered deposits occur within the Chu-Sarysu Basin, and that these deposits contain an arithmetic mean of at least 21.5 million metric tons (Mt) of copper and 21,900 metric tons (t) of silver. The undiscovered deposits are in addition to the 7 known deposits that contain identified resources of 27.6 Mt of copper. Sixty percent of the estimated mean undiscovered copper resources are associated with the two permissive tracts that contain the identified resources; the remaining estimated resources are associated with the two tracts that have no known deposits. For the three tracts that contain 95 percent of the estimated undiscovered copper resources, the probability that each tract contains its estimated mean or more is about 40 percent. For the tract with 5 percent of the estimated undiscovered cop-per resources, the probability that it contains that amount or more is 25 percent.</p>","largerWorkType":{"id":18,"text":"Report"},"largerWorkTitle":"Global mineral resource assessment (Scientific Investigations Report 2010-5090)","largerWorkSubtype":{"id":5,"text":"USGS Numbered Series"},"language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20105090E","collaboration":"Prepared in cooperation with the Centre for Russian and Central EurAsian Mineral Studies—Natural History Museum, London, United Kingdom, and Mining and Economic Consulting, Ltd., Almaty, Kazakhstan","usgsCitation":"Box, S.E., Syusyura, B., Hayes, T.S., Taylor, C.D., Zientek, M.L., Hitzman, M., Seltmann, R., Chechetkin, V., Dolgopolova, A., Cossette, P.M., and Wallis, J., 2012, Sandstone copper assessment of the Chu-Sarysu Basin, Central Kazakhstan: Chapter E in <i>Global mineral resource assessment</i>: U.S. Geological Survey Scientific Investigations Report 2010-5090, Report: vi, 63 p.; Metadata Folder; GIS Data, https://doi.org/10.3133/sir20105090E.","productDescription":"Report: vi, 63 p.; Metadata Folder; GIS Data","numberOfPages":"74","onlineOnly":"Y","additionalOnlineFiles":"Y","costCenters":[{"id":387,"text":"Mineral Resources Program","active":true,"usgs":true}],"links":[{"id":262731,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2010_5090_e.gif"},{"id":301359,"type":{"id":16,"text":"Metadata"},"url":"https://pubs.usgs.gov/sir/2010/5090/e/sir2010-5090e_metadata","size":"193 kB"},{"id":262724,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2010/5090/e/"},{"id":262725,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2010/5090/e/sir2010-5090e_text.pdf","text":"Report","size":"3.3 MB","linkFileType":{"id":1,"text":"pdf"},"description":"Report"},{"id":301360,"type":{"id":23,"text":"Spatial Data"},"url":"https://pubs.usgs.gov/sir/2010/5090/e/sir2010-5090e_gis.zip","text":"GIS data zip package","size":"1.7 MB","linkFileType":{"id":6,"text":"zip"},"description":"GIS data zip package"}],"projection":"Lambert Conformal Conic Projection","country":"Kazakhstan","otherGeospatial":"Chu-Sarysu Basin","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5094ec01e4b0e5cfc2acdcf9","contributors":{"authors":[{"text":"Box, Stephen E. 0000-0002-5268-8375 sbox@usgs.gov","orcid":"https://orcid.org/0000-0002-5268-8375","contributorId":1843,"corporation":false,"usgs":true,"family":"Box","given":"Stephen","email":"sbox@usgs.gov","middleInitial":"E.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":514669,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Syusyura, Boris","contributorId":72104,"corporation":false,"usgs":true,"family":"Syusyura","given":"Boris","email":"","affiliations":[],"preferred":false,"id":514674,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hayes, Timothy S. thayes@usgs.gov","contributorId":1547,"corporation":false,"usgs":true,"family":"Hayes","given":"Timothy","email":"thayes@usgs.gov","middleInitial":"S.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true},{"id":662,"text":"Western Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":514668,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Taylor, Cliff D. 0000-0001-6376-6298 ctaylor@usgs.gov","orcid":"https://orcid.org/0000-0001-6376-6298","contributorId":1283,"corporation":false,"usgs":true,"family":"Taylor","given":"Cliff","email":"ctaylor@usgs.gov","middleInitial":"D.","affiliations":[{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":514666,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Zientek, Michael L. 0000-0002-8522-9626 mzientek@usgs.gov","orcid":"https://orcid.org/0000-0002-8522-9626","contributorId":2420,"corporation":false,"usgs":true,"family":"Zientek","given":"Michael","email":"mzientek@usgs.gov","middleInitial":"L.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":514670,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hitzman, Murray W.","contributorId":14682,"corporation":false,"usgs":true,"family":"Hitzman","given":"Murray W.","affiliations":[],"preferred":false,"id":514671,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Seltmann, Reimar","contributorId":73450,"corporation":false,"usgs":true,"family":"Seltmann","given":"Reimar","email":"","affiliations":[],"preferred":false,"id":514675,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Chechetkin, Vladimir","contributorId":71821,"corporation":false,"usgs":true,"family":"Chechetkin","given":"Vladimir","affiliations":[],"preferred":false,"id":514673,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Dolgopolova, Alla","contributorId":96943,"corporation":false,"usgs":true,"family":"Dolgopolova","given":"Alla","email":"","affiliations":[],"preferred":false,"id":514676,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Cossette, Pamela M. 0000-0002-9608-6595 pcossette@usgs.gov","orcid":"https://orcid.org/0000-0002-9608-6595","contributorId":1458,"corporation":false,"usgs":true,"family":"Cossette","given":"Pamela","email":"pcossette@usgs.gov","middleInitial":"M.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":514667,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Wallis, John C.","contributorId":45755,"corporation":false,"usgs":true,"family":"Wallis","given":"John C.","affiliations":[],"preferred":false,"id":514672,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70040429,"text":"70040429 - 2012 - The 11 April 2012 east Indian Ocean earthquake triggered large aftershocks worldwide","interactions":[],"lastModifiedDate":"2012-10-19T17:16:26","indexId":"70040429","displayToPublicDate":"2012-10-19T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2840,"text":"Nature","active":true,"publicationSubtype":{"id":10}},"title":"The 11 April 2012 east Indian Ocean earthquake triggered large aftershocks worldwide","docAbstract":"Large earthquakes trigger very small earthquakes globally during passage of the seismic waves and during the following several hours to days<sup>1, 2, 3, 4, 5, 6, 7, 8, 9, 10</sup>, but so far remote aftershocks of moment magnitude <i>M</i>&ge;5.5 have not been identified<sup>11</sup>, with the lone exception of an <i>M</i>=6.9 quake remotely triggered by the surface waves from an <i>M</i>=6.6 quake 4,800 kilometres away<sup>12</sup>. The 2012 east Indian Ocean earthquake that had a moment magnitude of 8.6 is the largest strike-slip event ever recorded. Here we show that the rate of occurrence of remote <i>M</i>&ge;5.5 earthquakes (>1,500 kilometres from the epicentre) increased nearly fivefold for six days after the 2012 event, and extended in magnitude to <i>M</i>&ge;7. These global aftershocks were located along the four lobes of Love-wave radiation; all struck where the dynamic shear strain is calculated to exceed 10<sup>-7</sup> for at least 100 seconds during dynamic-wave passage. The other <i>M</i>&ge;8.5 mainshocks during the past decade are thrusts; after these events, the global rate of occurrence of remote <i>M</i>&ge;5.5 events increased by about one-third the rate following the 2012 shock and lasted for only two days, a weaker but possibly real increase. We suggest that the unprecedented delayed triggering power of the 2012 earthquake may have arisen because of its strike-slip source geometry or because the event struck at a time of an unusually low global earthquake rate, perhaps increasing the number of nucleation sites that were very close to failure.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Nature","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Nature Publishing Group","publisherLocation":"London, U.K.","doi":"10.1038/nature11504","usgsCitation":"Pollitz, F., Stein, R.S., Sevilgen, V., and Burgmann, R., 2012, The 11 April 2012 east Indian Ocean earthquake triggered large aftershocks worldwide: Nature, v. 490, p. 250-253, https://doi.org/10.1038/nature11504.","productDescription":"4 p.","startPage":"250","endPage":"253","costCenters":[{"id":379,"text":"Menlo Park Science Center","active":false,"usgs":true}],"links":[{"id":262723,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262720,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1038/nature11504"}],"country":"Indonesia","otherGeospatial":"Indian Ocean;Sumatra","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ 89.000000,-2.000000 ], [ 89.000000,6.000000 ], [ 99.000000,6.000000 ], [ 99.000000,-2.000000 ], [ 89.000000,-2.000000 ] ] ] } } ] }","volume":"490","noUsgsAuthors":false,"publicationDate":"2012-09-26","publicationStatus":"PW","scienceBaseUri":"50e4f705e4b0e8fec6ce7bfc","contributors":{"authors":[{"text":"Pollitz, Fred F.","contributorId":54029,"corporation":false,"usgs":true,"family":"Pollitz","given":"Fred F.","affiliations":[],"preferred":false,"id":468294,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Stein, Ross S. 0000-0001-7586-3933 rstein@usgs.gov","orcid":"https://orcid.org/0000-0001-7586-3933","contributorId":2604,"corporation":false,"usgs":true,"family":"Stein","given":"Ross","email":"rstein@usgs.gov","middleInitial":"S.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":468292,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sevilgen, Volkan vsevilgen@usgs.gov","contributorId":3254,"corporation":false,"usgs":true,"family":"Sevilgen","given":"Volkan","email":"vsevilgen@usgs.gov","affiliations":[],"preferred":true,"id":468293,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Burgmann, Roland","contributorId":95128,"corporation":false,"usgs":true,"family":"Burgmann","given":"Roland","affiliations":[],"preferred":false,"id":468295,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70040406,"text":"sir20125115 - 2012 - Mercury in waters, soils, and sediments of the New Jersey Coastal Plain: A comparison of regional distribution and mobility with the mercury contamination at the William J. Hughes Technical Center, Atlantic County, New Jersey","interactions":[],"lastModifiedDate":"2012-10-18T17:16:15","indexId":"sir20125115","displayToPublicDate":"2012-10-18T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2012-5115","title":"Mercury in waters, soils, and sediments of the New Jersey Coastal Plain: A comparison of regional distribution and mobility with the mercury contamination at the William J. Hughes Technical Center, Atlantic County, New Jersey","docAbstract":"Mercury in soils, surface water, and groundwater at the William J. Hughes Technical Center , Atlantic County, New Jersey, has been found at levels that exceed established background concentrations in Coastal Plain waters, and, in some cases, New Jersey State standards for mercury in various media. As of 2012, it is not known whether this mercury is part of regional mercury contamination or whether it is related to former military activities. Regionally, groundwater supplying about 700 domestic wells in the New Jersey Coastal Plain is contaminated with mercury that appears to be derived from anthropogenic inputs, such as agricultural pesticide use and atmospheric deposition. High levels of mercury occasionally are found in Coastal Plain soils, but disturbance during residential development on former agricultural land is thought to have mobilized any mercury applied during farming, a hypothesis borne out by experiments leaching mercury from soils. In the unsewered residential areas with mercury-contaminated groundwater, septic-system effluent is believed to create reducing conditions in which mercury sorbed to subsoils is mobilized to groundwater. In comparing the levels of mercury found in soils, sediments, streamwater, and groundwater at the William J. Hughes Technical Center site with those found regionally, mercury concentrations in groundwater in the region are, in some cases, substantially higher than those found in groundwater at the William J. Hughes Technical Center site. Nevertheless, concentrations of mercury in streamwater at the site are, in some instances, higher than most found regionally. The mercury contents in soils and sediment at the William J. Hughes Technical Center site are substantially higher than those found to date (2012) in the region, indicating that a source other than regional sources may be present at the site.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20125115","collaboration":"Prepared in Cooperation with the U.S. Army Corps of Engineers","usgsCitation":"Barringer, J., Szabo, Z., and Reilly, P.A., 2012, Mercury in waters, soils, and sediments of the New Jersey Coastal Plain: A comparison of regional distribution and mobility with the mercury contamination at the William J. Hughes Technical Center, Atlantic County, New Jersey: U.S. Geological Survey Scientific Investigations Report 2012-5115, vii, 34 p., https://doi.org/10.3133/sir20125115.","productDescription":"vii, 34 p.","numberOfPages":"46","onlineOnly":"Y","costCenters":[{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true}],"links":[{"id":262714,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2012_5115.bmp"},{"id":262712,"rank":300,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2012/5115/pdf/sir2012-5115.pdf","linkFileType":{"id":1,"text":"pdf"}},{"id":262711,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2012/5115/","linkFileType":{"id":5,"text":"html"}}],"scale":"24000","projection":"Universal Transverse Mercator projection, Zone 18","datum":"North American Datum of 1983","country":"United States","state":"New Jersey","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -75.559800,38.928600 ], [ -75.559800,41.357400 ], [ -73.902500,41.357400 ], [ -73.902500,38.928600 ], [ -75.559800,38.928600 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"508117cbe4b00e5d41d20a80","contributors":{"authors":[{"text":"Barringer, Julia L.","contributorId":59419,"corporation":false,"usgs":true,"family":"Barringer","given":"Julia L.","affiliations":[],"preferred":false,"id":468285,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Szabo, Zoltan 0000-0002-0760-9607 zszabo@usgs.gov","orcid":"https://orcid.org/0000-0002-0760-9607","contributorId":2240,"corporation":false,"usgs":true,"family":"Szabo","given":"Zoltan","email":"zszabo@usgs.gov","affiliations":[{"id":451,"text":"National Water Quality Assessment Program","active":true,"usgs":true}],"preferred":false,"id":468284,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Reilly, Pamela A. 0000-0002-2937-4490 jankowsk@usgs.gov","orcid":"https://orcid.org/0000-0002-2937-4490","contributorId":653,"corporation":false,"usgs":true,"family":"Reilly","given":"Pamela","email":"jankowsk@usgs.gov","middleInitial":"A.","affiliations":[{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true}],"preferred":true,"id":468283,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040405,"text":"ofr20121187 - 2012 - Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon","interactions":[],"lastModifiedDate":"2019-04-25T10:08:31","indexId":"ofr20121187","displayToPublicDate":"2012-10-18T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2012-1187","title":"Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon","docAbstract":"<p>This report summarizes a preliminary study of bed-material transport, vertical and lateral channel changes, and existing datasets for the Tillamook (drainage area 156 square kilometers [km<sup>2</sup>]), Trask (451 km<sup>2</sup>), Wilson (500 km<sup>2</sup>), Kilchis (169 km<sup>2</sup>), Miami (94 km<sup>2</sup>), and Nehalem (2,207 km<sup>2</sup>) Rivers along the northwestern Oregon coast. This study, conducted in coopera-tion with the U.S. Army Corps of Engineers and Oregon Department of State Lands to inform permitting decisions regarding instream gravel mining, revealed that:</p><ul><li><p>Study areas along the six rivers can be divided into reaches based on tidal influence and topography. The fluvial (nontidal or dominated by riverine processes) reaches vary in length (2.4-9.3 kilometer [km]), gradient (0.0011-0.0075 meter of elevation change per meter of channel length [m/m]), and bed-material composition (a mixture of alluvium and intermittent bedrock outcrops to predominately alluvium). In fluvial reaches, unit bar area (square meter of bar area per meter of channel length [m<sup>2</sup>/m]) as mapped from 2009 photographs ranged from 7.1 m<sup>2</sup>/m on the Tillamook River to 27.9 m<sup>2</sup>/m on the Miami River.</p></li><li><p>In tidal reaches, all six rivers flow over alluvial deposits, but have varying gradients (0.0001-0.0013 m/m) and lengths affected by tide (1.3-24.6 km). The Miami River has the steepest and shortest tidal reach and the Nehalem River has the flattest and longest tidal reach. Bars in the tidal reaches are generally composed of sand and mud. Unit bar area was greatest in the Tidal Nehalem Reach, where extensive mud flats flank the lower channel.</p></li><li><p>Background factors such as valley and channel confinement, basin geology, channel slope, and tidal extent control the spatial variation in the accumulation and texture of bed material. Presently, the Upper Fluvial Wilson and Miami Reaches and Fluvial Nehalem Reach have the greatest abundance of gravel bars, likely owing to local bed-material sources in combination with decreasing channel gradient and valley confinement.</p></li><li><p>Natural and human-caused disturbances such as mass movements, logging, fire, channel modifications for navigation and flood control, and gravel mining also have varying effects on channel condition, bed-material transport, and distribution and area of bars throughout the study areas and over time.</p></li><li><p>Existing datasets include at least 16 and 18 sets of aerial and orthophotographs that were taken of the study areas in the Tillamook Bay tributary basins and Nehalem River basin, respectively, from 1939 to 2011. These photographs are available for future assessments of long-term changes in channel condition, bar area, and vegetation establishment patterns. High resolution Light Detection And Ranging (LiDAR) surveys acquired in 2007-2009 could support future quantitative analyses of channel morphology and bed-material transport in all study areas.</p></li><li><p>A review of deposited and mined gravel volumes reported for instream gravel mining sites shows that bed-material deposition tends to rebuild mined bar surfaces in most years. Mean annual deposition volumes on individual bars exceeded 3,000 cubic meters (m<sup>3</sup>) on Donaldson Bar on the Wilson River, Dill Bar on the Kilchis River, and Plant and Winslow Bars on the Nehalem River. Cumulative reported volumes of bed-material deposition were greatest at Donaldson and Dill Bars, totaling over 25,000 m<sup>3</sup> per site from 2004 to 2011. Within this period, reported cumulative mined volumes were greatest for the Donaldson, Plant, and Winslow Bars, ranging from 24,470 to 33,940 m<sup>3</sup>.</p></li><li><p>Analysis of historical stage-streamflow data collected by the U.S. Geological Survey on the Wilson River near Tillamook (14301500) and Nehalem River near Foss (14301000) shows that these rivers have episodically aggraded and incised, mostly following high flow events, but they do not exhibit systematic, long-term trends in bed elevation.</p><p>Multiple cross sections show that channels near bridge crossings in all six study areas are dynamic with many subject to incision and aggradation as well as lateral shifts in thalweg position and bank deposition and erosion.</p></li><li><p>In fluvial reaches, unit bar area declined a net 5.3-83.6 percent from 1939 to 2009. The documented reduction in bar area may be attributable to several factors, including vegetation establishment and stabilization of formerly active bar surfaces, lateral channel changes and resulting alterations in sediment deposition and erosion patterns, and streamflow and/or tide differences between photographs. Other factors that may be associated with the observed reduction in bar area but not assessed in this reconnaissance level study include changes in the sediment and hydrology regimes of these rivers over the analysis period.</p></li><li><p>In tidal reaches, unit bar area increased on the Tillamook and Nehalem Rivers (98.0 and 14.7 percent, respectively), but declined a net 24.2 to 83.1 percent in the other four tidal reaches. Net increases in bar area in the Tidal Tillamook and Nehalem Reaches were possibly attributable to tidal differences between the photographs as well as sediment deposition behind log booms and pile structures on the Tillamook River between 1939 and 1967.</p></li><li><p>The armoring ratio (ratio of the median grain sizes of a bar's surface and subsurface layers) was 1.6 at Lower Waldron Bar on the Miami River, tentatively indicating a relative balance between transport capacity and sediment supply at this location. Armoring ratios, however, ranged from 2.4 to 5.5 at sites on the Trask, Wilson, Kilchis, and Nehalem Rivers; these coarse armor layers probably reflect limited bed-material supply at these sites.</p></li><li><p>On the basis of mapping results, measured armoring ratios, and channel cross section surveys, preliminary conclusions are that the fluvial reaches on the Tillamook, Trask, Kilchis, and Nehalem Rivers are currently sediment supply-limited in terms of bed material - that is, the transport capacity of the channel generally exceeds the supply of bed material. The relation between transport capacity and sediment is more ambiguous for the fluvial reaches on the Wilson and Miami Rivers, but transport-limited conditions are likely for at least parts of these reaches. Some of these reaches have possibly evolved from sediment supply-limited to transport-limited over the last several decades in response to changing basin and climate conditions.</p></li><li><p>Because of exceedingly low gradients, all the tidal reaches are transport-limited. Bed material in these reaches, however, is primarily sand and finer grain-size material and probably transported as suspended load from upstream reaches. These reaches will be most susceptible to watershed conditions affecting the supply and transport of fine sediment.</p></li><li><p>Compared to basins on the southwestern Oregon coast, such as the Chetco and Rogue River basins, these six basins likely transport overall less gravel bed material. Although tentative in the absence of actual transport measurements, this conclusion is supported by the much lower area and frequency of bars and longer tidal reaches along all the northcoast rivers examined in this study.</p></li><li><p>Previous studies suggest that the expansive and largely unvegetated bars visible in the 1939 photographs are primarily associated with voluminous sedimentation starting soon after the first Tillamook Burn fire in 1933. However, USGS studies of temporal bar trends in other Oregon coastal rivers unaffected by the Tillamook Burn show similar declines in bar area over approximately the same analysis period. In the Umpqua and Chetco River basins, historical declines in bar area are associated with long-term decreases in flood magnitude. Other factors may include changes in the type and volume of large wood and riparian vegetation. Further characterization of hydrology patterns in these basins and possible linkages with climate factors related to flood peaks, such as the Pacific Decadal Oscillation, could support inferences of expected future changes in vegetation establishment and channel planform and profile.</p></li><li><p>More detailed investigations of bed-material transport rates and channel morphology would support assessments of lateral and vertical channel condition and longitudinal trends in bed material. Such assessments would be most practical for the fluvial study areas on the Wilson, Kilchis, Miami, and Nehalem Rivers and relevant to several ongoing management and ecological issues pertaining to sand and gravel transport. Tidal reaches may also be logical subjects for indepth analysis where studies would be more relevant to the deposition and transport of fine sediment (and associated channel and riparian conditions and processes) rather than coarse bed material.</p></li></ul>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20121187","collaboration":"Prepared in cooperation with the U.S. Army Corps of Engineers and the Oregon Department of State Lands","usgsCitation":"Jones, K.L., Keith, M., O'Connor, J., Mangano, J.F., and Wallick, J., 2012, Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon: U.S. Geological Survey Open-File Report 2012-1187, viii, 120 p., https://doi.org/10.3133/ofr20121187.","productDescription":"viii, 120 p.","numberOfPages":"131","costCenters":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true},{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true}],"links":[{"id":262710,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2012_1187.bmp"},{"id":262708,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2012/1187/","linkFileType":{"id":5,"text":"html"}},{"id":262709,"rank":300,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2012/1187/pdf/ofr20121187.pdf","linkFileType":{"id":1,"text":"pdf"}}],"projection":"Universal Transverse Mercator, Zone 10 North","datum":"North American Datum of 1983","country":"United States","state":"Oregon","otherGeospatial":"Kilchis River, Miami River, Nehalem River, Tillamook River, Trask River, Wilson River","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -124.000000,45.333333 ], [ -124.000000,45.666667 ], [ -123.333333,45.666667 ], [ -123.333333,45.333333 ], [ -124.000000,45.333333 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"508117dde4b00e5d41d20a84","contributors":{"authors":[{"text":"Jones, Krista L. 0000-0002-0301-4497 kljones@usgs.gov","orcid":"https://orcid.org/0000-0002-0301-4497","contributorId":4550,"corporation":false,"usgs":true,"family":"Jones","given":"Krista","email":"kljones@usgs.gov","middleInitial":"L.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":468279,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Keith, Mackenzie K.","contributorId":16560,"corporation":false,"usgs":true,"family":"Keith","given":"Mackenzie K.","affiliations":[],"preferred":false,"id":468281,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"O'Connor, Jim E. 0000-0002-7928-5883 oconnor@usgs.gov","orcid":"https://orcid.org/0000-0002-7928-5883","contributorId":140771,"corporation":false,"usgs":true,"family":"O'Connor","given":"Jim E.","email":"oconnor@usgs.gov","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true},{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":false,"id":468282,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Mangano, Joseph F. 0000-0003-4213-8406 jmangano@usgs.gov","orcid":"https://orcid.org/0000-0003-4213-8406","contributorId":4722,"corporation":false,"usgs":true,"family":"Mangano","given":"Joseph","email":"jmangano@usgs.gov","middleInitial":"F.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":468280,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Wallick, J. Rose 0000-0002-9392-272X rosewall@usgs.gov","orcid":"https://orcid.org/0000-0002-9392-272X","contributorId":3583,"corporation":false,"usgs":true,"family":"Wallick","given":"J. Rose","email":"rosewall@usgs.gov","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":468278,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70040329,"text":"70040329 - 2012 - Ecology for conserving our sirenians","interactions":[],"lastModifiedDate":"2012-10-18T17:16:15","indexId":"70040329","displayToPublicDate":"2012-10-18T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1465,"text":"Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Ecology for conserving our sirenians","docAbstract":"Review of: Ecology and conservation of the sirenia: dugongs and manatees. Helene Marsh, Thomas J. O'Shea and John E. Reynolds III. Cambridge University Press, Cambridge, 2012, 521 pp, ISBN 978-0-521-88828-8, US$135 and 978-0-521-71643-7, US$65.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Ecology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"ESA","publisherLocation":"Ithaca, NY","doi":"10.1890/BR12-41.1","usgsCitation":"Bonde, R.K., 2012, Ecology for conserving our sirenians: Ecology, v. 93, no. 9, p. 2127-2128, https://doi.org/10.1890/BR12-41.1.","productDescription":"2 p.","startPage":"2127","endPage":"2128","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262707,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262703,"rank":800,"type":{"id":11,"text":"Document"},"url":"https://dx.doi.org/10.1890/BR12-41.1"}],"volume":"93","issue":"9","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5080183ee4b0a0242ef285b0","contributors":{"authors":[{"text":"Bonde, Robert K. 0000-0001-9179-4376 rbonde@usgs.gov","orcid":"https://orcid.org/0000-0001-9179-4376","contributorId":2675,"corporation":false,"usgs":true,"family":"Bonde","given":"Robert","email":"rbonde@usgs.gov","middleInitial":"K.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":468101,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70040331,"text":"70040331 - 2012 - Plant allocation of carbon to defense as a function of herbivory, light and nutrient availability","interactions":[],"lastModifiedDate":"2012-10-17T17:16:17","indexId":"70040331","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3592,"text":"Theoretical Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Plant allocation of carbon to defense as a function of herbivory, light and nutrient availability","docAbstract":"We use modeling to determine the optimal relative plant carbon allocations between foliage, fine roots, anti-herbivore defense, and reproduction to maximize reproductive output. The model treats these plant components and the herbivore compartment as variables. Herbivory is assumed to be purely folivory. Key external factors include nutrient availability, degree of shading, and intensity of herbivory. Three alternative functional responses are used for herbivory, two of which are variations on donor-dependent herbivore (models 1a and 1b) and one of which is a Lotka&ndash;Volterra type of interaction (model 2). All three were modified to include the negative effect of chemical defenses on the herbivore. Analysis showed that, for all three models, two stable equilibria could occur, which differs from most common functional responses when no plant defense component is included. Optimal strategies of carbon allocation were defined as the maximum biomass of reproductive propagules produced per unit time, and found to vary with changes in external factors. Increased intensity of herbivory always led to an increase in the fractional allocation of carbon to defense. Decreases in available limiting nutrient generally led to increasing importance of defense. Decreases in available light had little effect on defense but led to increased allocation to foliage. Decreases in limiting nutrient and available light led to decreases in allocation to reproduction in models 1a and 1b but not model 2. Increases in allocation to plant defense were usually accompanied by shifts in carbon allocation away from fine roots, possibly because higher plant defense reduced the loss of nutrients to herbivory.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Theoretical Ecology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Springer","publisherLocation":"Amsterdam, Netherlands","doi":"10.1007/s12080-011-0135-z","usgsCitation":"DeAngelis, D., Ju, S., Liu, R., Bryant, J.P., and Gourley, S.A., 2012, Plant allocation of carbon to defense as a function of herbivory, light and nutrient availability: Theoretical Ecology, v. 5, no. 3, p. 445-456, https://doi.org/10.1007/s12080-011-0135-z.","productDescription":"12 p.","startPage":"445","endPage":"456","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262660,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262658,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s12080-011-0135-z"}],"volume":"5","issue":"3","noUsgsAuthors":false,"publicationDate":"2011-08-16","publicationStatus":"PW","scienceBaseUri":"507ee060e4b022001d87bb8e","contributors":{"authors":[{"text":"DeAngelis, Donald L. 0000-0002-1570-4057","orcid":"https://orcid.org/0000-0002-1570-4057","contributorId":88015,"corporation":false,"usgs":true,"family":"DeAngelis","given":"Donald L.","affiliations":[],"preferred":false,"id":468105,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ju, Shu","contributorId":105844,"corporation":false,"usgs":true,"family":"Ju","given":"Shu","affiliations":[],"preferred":false,"id":468106,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Liu, Rongsong","contributorId":43480,"corporation":false,"usgs":false,"family":"Liu","given":"Rongsong","email":"","affiliations":[],"preferred":false,"id":468103,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bryant, John P.","contributorId":39227,"corporation":false,"usgs":false,"family":"Bryant","given":"John","email":"","middleInitial":"P.","affiliations":[{"id":13117,"text":"Institute of Arctic Biology, University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":468102,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Gourley, Stephen A.","contributorId":60487,"corporation":false,"usgs":true,"family":"Gourley","given":"Stephen","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":468104,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70040341,"text":"70040341 - 2012 - Analysis of the trap gene provides evidence for the role of elevation and vector abundance in the genetic diversity of Plasmodium relictum in Hawaii","interactions":[],"lastModifiedDate":"2013-11-15T10:49:15","indexId":"70040341","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2650,"text":"Malaria Journal","active":true,"publicationSubtype":{"id":10}},"title":"Analysis of the trap gene provides evidence for the role of elevation and vector abundance in the genetic diversity of Plasmodium relictum in Hawaii","docAbstract":"Background: The avian disease system in Hawaii offers an ideal opportunity to investigate host-pathogen interactions in a natural setting. Previous studies have recognized only a single mitochondrial lineage of avian malaria (Plasmodium relictum) in the Hawaiian Islands, but cloning and sequencing of nuclear genes suggest a higher degree of genetic diversity. Methods: In order to evaluate genetic diversity of P. relictum at the population level and further understand host-parasite interactions, a modified single-base extension (SBE) method was used to explore spatial and temporal distribution patterns of single nucleotide polymorphisms (SNPs) in the thrombospondin-related anonymous protein (trap) gene of P. relictum infections from 121 hatch-year amakihi (Hemignathus virens) on the east side of Hawaii Island. Results: Rare alleles and mixed infections were documented at three of eight SNP loci; this is the first documentation of genetically diverse infections of P. relictum at the population level in Hawaii. Logistic regression revealed that the likelihood of infection with a rare allele increased at low-elevation, but decreased as mosquito capture rates increased. The inverse relationship between vector capture rates and probability of infection with a rare allele is unexpected given current theories of epidemiology developed in human malarias. Conclusions: The results of this study suggest that pathogen diversity in Hawaii may be driven by a complex interaction of factors including transmission rates, host immune pressures, and parasite-parasite competition.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Malaria Journal","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"BioMed Central Ltd.","publisherLocation":"London, U.K.","doi":"10.1186/1475-2875-11-305","usgsCitation":"Farias, M.E., Atkinson, C.T., LaPointe, D.A., and Jarvi, S.I., 2012, Analysis of the trap gene provides evidence for the role of elevation and vector abundance in the genetic diversity of Plasmodium relictum in Hawaii: Malaria Journal, v. 11, no. 1, 14 p.; Article 305, https://doi.org/10.1186/1475-2875-11-305.","productDescription":"14 p.; Article 305","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":474309,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1186/1475-2875-11-305","text":"Publisher Index Page"},{"id":262673,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262644,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1186/1475-2875-11-305","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Hawai'i","volume":"11","issue":"1","noUsgsAuthors":false,"publicationDate":"2012-09-03","publicationStatus":"PW","scienceBaseUri":"507edfb5e4b022001d87bb45","contributors":{"authors":[{"text":"Farias, Margaret E.M.","contributorId":74624,"corporation":false,"usgs":true,"family":"Farias","given":"Margaret","email":"","middleInitial":"E.M.","affiliations":[],"preferred":false,"id":468121,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Atkinson, Carter T. 0000-0002-4232-5335 catkinson@usgs.gov","orcid":"https://orcid.org/0000-0002-4232-5335","contributorId":1124,"corporation":false,"usgs":true,"family":"Atkinson","given":"Carter","email":"catkinson@usgs.gov","middleInitial":"T.","affiliations":[{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true},{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":468118,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"LaPointe, Dennis A.","contributorId":63900,"corporation":false,"usgs":true,"family":"LaPointe","given":"Dennis","email":"","middleInitial":"A.","affiliations":[{"id":595,"text":"U.S. Geological Survey","active":false,"usgs":true}],"preferred":false,"id":468120,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Jarvi, Susan I.","contributorId":47748,"corporation":false,"usgs":true,"family":"Jarvi","given":"Susan","email":"","middleInitial":"I.","affiliations":[],"preferred":false,"id":468119,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70040343,"text":"70040343 - 2012 - Revealing the appetite of the marine aquarium fish trade: the volume and biodiversity of fish imported into the United States","interactions":[],"lastModifiedDate":"2012-10-17T17:16:17","indexId":"70040343","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"Revealing the appetite of the marine aquarium fish trade: the volume and biodiversity of fish imported into the United States","docAbstract":"The aquarium trade and other wildlife consumers are at a crossroads forced by threats from global climate change and other anthropogenic stressors that have weakened coastal ecosystems. While the wildlife trade may put additional stress on coral reefs, it brings income into impoverished parts of the world and may stimulate interest in marine conservation. To better understand the influence of the trade, we must first be able to quantify coral reef fauna moving through it. Herein, we discuss the lack of a data system for monitoring the wildlife aquarium trade and analyze problems that arise when trying to monitor the trade using a system not specifically designed for this purpose. To do this, we examined an entire year of import records of marine tropical fish entering the United States in detail, and discuss the relationship between trade volume, biodiversity and introduction of non-native marine fishes. Our analyses showed that biodiversity levels are higher than previous estimates. Additionally, more than half of government importation forms have numerical or other reporting discrepancies resulting in the overestimation of trade volumes by 27%. While some commonly imported species have been introduced into the coastal waters of the USA (as expected), we also found that some uncommon species in the trade have also been introduced. This is the first study of aquarium trade imports to compare commercial invoices to government forms and provides a means to, routinely and in real time, examine the biodiversity of the trade in coral reef wildlife species.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"PLoS ONE","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Public Library of Science","publisherLocation":"San Francisco, CA","doi":"10.1371/journal.pone.0035808","usgsCitation":"Rhyne, A.L., Tlusty, M.F., Schofield, P., Kaufman, L., Morris, J., and Bruckner, A.W., 2012, Revealing the appetite of the marine aquarium fish trade: the volume and biodiversity of fish imported into the United States: PLoS ONE, v. 7, no. 5, 9 p.; e35808, https://doi.org/10.1371/journal.pone.0035808.","productDescription":"9 p.; e35808","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":474311,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0035808","text":"Publisher Index Page"},{"id":262674,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262659,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1371/journal.pone.0035808"}],"volume":"7","issue":"5","noUsgsAuthors":false,"publicationDate":"2012-05-21","publicationStatus":"PW","scienceBaseUri":"507ee079e4b022001d87bb9a","contributors":{"authors":[{"text":"Rhyne, Andrew L.","contributorId":94910,"corporation":false,"usgs":true,"family":"Rhyne","given":"Andrew","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":468126,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Tlusty, Michael F.","contributorId":95745,"corporation":false,"usgs":true,"family":"Tlusty","given":"Michael","email":"","middleInitial":"F.","affiliations":[],"preferred":false,"id":468127,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schofield, Pamela J. 0000-0002-8752-2797","orcid":"https://orcid.org/0000-0002-8752-2797","contributorId":30306,"corporation":false,"usgs":true,"family":"Schofield","given":"Pamela J.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":468122,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kaufman, Les","contributorId":50031,"corporation":false,"usgs":true,"family":"Kaufman","given":"Les","affiliations":[],"preferred":false,"id":468123,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Morris, James A. Jr.","contributorId":51898,"corporation":false,"usgs":true,"family":"Morris","given":"James A.","suffix":"Jr.","affiliations":[],"preferred":false,"id":468124,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Bruckner, Andrew W.","contributorId":92912,"corporation":false,"usgs":true,"family":"Bruckner","given":"Andrew","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":468125,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70040336,"text":"70040336 - 2012 - Ecology and conservation biology of avian malaria","interactions":[],"lastModifiedDate":"2013-11-15T10:48:50","indexId":"70040336","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":801,"text":"Annals of the New York Academy of Sciences","active":true,"publicationSubtype":{"id":10}},"title":"Ecology and conservation biology of avian malaria","docAbstract":"Avian malaria is a worldwide mosquito-borne disease caused by Plasmodium parasites. These parasites occur in many avian species but primarily affect passerine birds that have not evolved with the parasite. Host pathogenicity, fitness, and population impacts are poorly understood. In contrast to continental species, introduced avian malaria poses a substantial threat to naive birds on Hawaii, the Galapagos, and other archipelagoes. In Hawaii, transmission is maintained by susceptible native birds, competence and abundance of mosquitoes, and a disease reservoir of chronically infected native birds. Although vector habitat and avian communities determine the geographic distribution of disease, climate drives transmission patterns ranging from continuous high infection in warm lowland forests, seasonal infection in midelevation forests, and disease-free refugia in cool high-elevation forests. Global warming is expected to increase the occurrence, distribution, and intensity of avian malaria across this elevational gradient and threaten high-elevation refugia, which is the key to survival of many susceptible Hawaiian birds. Increased temperatures may have already increased global avian malaria prevalence and contributed to an emergence of disease in New Zealand.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Annals of the New York Academy of Sciences","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Wiley","publisherLocation":"Hoboken, NJ","doi":"10.1111/j.1749-6632.2011.06431.x","usgsCitation":"LaPointe, D.A., Atkinson, C.T., and Samuel, M.D., 2012, Ecology and conservation biology of avian malaria: Annals of the New York Academy of Sciences, v. 1249, p. 211-226, https://doi.org/10.1111/j.1749-6632.2011.06431.x.","productDescription":"16 p.","startPage":"211","endPage":"226","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":474312,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/j.1749-6632.2011.06431.x","text":"Publisher Index Page"},{"id":262675,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262651,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1111/j.1749-6632.2011.06431.x"}],"country":"United States","state":"Hawai'i","volume":"1249","noUsgsAuthors":false,"publicationDate":"2012-02-09","publicationStatus":"PW","scienceBaseUri":"507ee009e4b022001d87bb69","contributors":{"authors":[{"text":"LaPointe, Dennis A.","contributorId":63900,"corporation":false,"usgs":true,"family":"LaPointe","given":"Dennis","email":"","middleInitial":"A.","affiliations":[{"id":595,"text":"U.S. Geological Survey","active":false,"usgs":true}],"preferred":false,"id":468117,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Atkinson, Carter T. 0000-0002-4232-5335 catkinson@usgs.gov","orcid":"https://orcid.org/0000-0002-4232-5335","contributorId":1124,"corporation":false,"usgs":true,"family":"Atkinson","given":"Carter","email":"catkinson@usgs.gov","middleInitial":"T.","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true},{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":true,"id":468115,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Samuel, Michael D. msamuel@usgs.gov","contributorId":1419,"corporation":false,"usgs":true,"family":"Samuel","given":"Michael","email":"msamuel@usgs.gov","middleInitial":"D.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":468116,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040332,"text":"70040332 - 2012 - Bleaching, disease and recovery in the threatened scleractinian coral Acropora palmata in St. John, US Virgin Islands: 2003-2010","interactions":[],"lastModifiedDate":"2012-10-17T17:16:17","indexId":"70040332","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1338,"text":"Coral Reefs","active":true,"publicationSubtype":{"id":10}},"title":"Bleaching, disease and recovery in the threatened scleractinian coral Acropora palmata in St. John, US Virgin Islands: 2003-2010","docAbstract":"A long-term study of the scleractinian coral Acropora palmata in the US Virgin Islands (USVI) showed that diseases, particularly white pox, are limiting the recovery of this threatened species. Colonies of A. palmata in Haulover Bay, within Virgin Islands National Park, St. John, were examined monthly in situ for signs of disease and other stressors from January 2003 through December 2009. During the study, 89.9 % of the colonies (<i>n</i> = 69) exhibited disease, including white pox (87 %), white band (13 %), and unknown (9 %). Monthly disease prevalence ranged from 0 to 57 %, and disease was the most significant cause of complete colony mortality (<i>n</i> = 17). A positive correlation was found between water temperature and disease prevalence, but not incidence. Annual average disease prevalence and incidence remained constant during the study. Colonies generally showed an increase in the estimated amount of total living tissue from growth, but 25 (36.2 %) of the colonies died. Acropora palmata bleached in the USVI for the first time during the 2005 Caribbean bleaching event. Only one of the 23 colonies that bleached appeared to die directly from bleaching. In 2005, corals that bleached had greater disease prevalence than those that did not bleach. Just over half (52 %) of the colonies incurred some physical damage. Monitoring of fragments (broken branches) that were generated by physical damage through June 2007 showed that 46.1 % died and 28.4 % remained alive; the fragments that attached to the substrate survived longer than those that did not. Recent surveys showed an increase in the total number of colonies within the reef area, formed from both asexual and sexual reproduction. Genotype analysis of 48 of the originally monitored corals indicated that 43 grew from sexual recruits supporting the conclusion that both asexual and sexual reproduction are contributing to an increase in colony density at this site.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Coral Reefs","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Springer","publisherLocation":"Amsterdam, Netherlands","doi":"10.1007/s00338-012-0898-8","usgsCitation":"Rogers, C., and Muller, E.M., 2012, Bleaching, disease and recovery in the threatened scleractinian coral Acropora palmata in St. John, US Virgin Islands: 2003-2010: Coral Reefs, v. 31, no. 3, p. 807-819, https://doi.org/10.1007/s00338-012-0898-8.","productDescription":"13 p.","startPage":"807","endPage":"819","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262661,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262646,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s00338-012-0898-8"}],"country":"United States","otherGeospatial":"St. John Island;U.S. Virgin Islands","volume":"31","issue":"3","noUsgsAuthors":false,"publicationDate":"2012-03-16","publicationStatus":"PW","scienceBaseUri":"507edfcee4b022001d87bb51","contributors":{"authors":[{"text":"Rogers, C.S. 0000-0001-9056-6961","orcid":"https://orcid.org/0000-0001-9056-6961","contributorId":37274,"corporation":false,"usgs":true,"family":"Rogers","given":"C.S.","affiliations":[],"preferred":false,"id":468108,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Muller, E. M.","contributorId":23778,"corporation":false,"usgs":true,"family":"Muller","given":"E.","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":468107,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70040321,"text":"70040321 - 2012 - Rapid invasion of the Indo-Pacific lionfishes (Pterois volitans and Pterois miles) in the Florida Keys, USA: evidence from multiple pre-and post-invasion data sets","interactions":[],"lastModifiedDate":"2012-10-17T17:16:17","indexId":"70040321","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1106,"text":"Bulletin of Marine Science","active":true,"publicationSubtype":{"id":10}},"title":"Rapid invasion of the Indo-Pacific lionfishes (Pterois volitans and Pterois miles) in the Florida Keys, USA: evidence from multiple pre-and post-invasion data sets","docAbstract":"Over the past decade, Indo-Pacific lionfishes, Pterois volitans (Linnaeus, 1758) and Pterois miles (Bennett, 1828), venomous members of the scorpionfish family (Scorpaenidae), have invaded and spread throughout much of the tropical and subtropical northwestern Atlantic Ocean and Caribbean Sea. These species are generalist predators of fishes and invertebrates with the potential to disrupt the ecology of the invaded range. Lionfishes have been present in low numbers along the east coast of Florida since the 1980s, but were not reported in the Florida Keys until 2009. We document the appearance and rapid spread of lionfishes in the Florida Keys using multiple long-term data sets that include both pre- and post-invasion sampling. Our results are the first to quantify the invasion of lionfishes in a new area using multiple independent, ongoing monitoring data sets, two of which have explicit estimates of sampling effort. Between 2009 and 2011, lionfish frequency of occurrence, abundance, and biomass increased rapidly, increasing three- to six-fold between 2010 and 2011 alone. In addition, individuals were detected on a variety of reef and non-reef habitats throughout the Florida Keys. Because lionfish occurrence, abundance, and impacts are expected to continue to increase throughout the region, monitoring programs like those used in this study will be essential to document ecosystem changes that may result from this invasion.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Bulletin of Marine Science","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"University of Miami","publisherLocation":"Miami, FL","doi":"10.5343/bms.2011.1108","usgsCitation":"Ruttenberg, B.I., Schofield, P., Akins, J.L., Acosta, A., Feeley, M.W., Blondeau, J., Smith, S.G., and Ault, J.S., 2012, Rapid invasion of the Indo-Pacific lionfishes (Pterois volitans and Pterois miles) in the Florida Keys, USA: evidence from multiple pre-and post-invasion data sets: Bulletin of Marine Science, v. 88, no. 4, p. 1051-1059, https://doi.org/10.5343/bms.2011.1108.","productDescription":"9 p.","startPage":"1051","endPage":"1059","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262663,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262678,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.5343/bms.2011.1108"}],"country":"United States","otherGeospatial":"Floria Keys","volume":"88","issue":"4","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"507ee070e4b022001d87bb96","contributors":{"authors":[{"text":"Ruttenberg, Benjamin I.","contributorId":46353,"corporation":false,"usgs":true,"family":"Ruttenberg","given":"Benjamin","email":"","middleInitial":"I.","affiliations":[],"preferred":false,"id":468076,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Schofield, Pamela J. 0000-0002-8752-2797","orcid":"https://orcid.org/0000-0002-8752-2797","contributorId":30306,"corporation":false,"usgs":true,"family":"Schofield","given":"Pamela J.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":468074,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Akins, J. Lad","contributorId":102735,"corporation":false,"usgs":false,"family":"Akins","given":"J.","email":"","middleInitial":"Lad","affiliations":[],"preferred":false,"id":468079,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Acosta, Alejandro","contributorId":9514,"corporation":false,"usgs":true,"family":"Acosta","given":"Alejandro","email":"","affiliations":[],"preferred":false,"id":468073,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Feeley, Michael W.","contributorId":37590,"corporation":false,"usgs":true,"family":"Feeley","given":"Michael","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":468075,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Blondeau, Jeremiah","contributorId":98579,"corporation":false,"usgs":true,"family":"Blondeau","given":"Jeremiah","email":"","affiliations":[],"preferred":false,"id":468078,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Smith, Steven G. sgsmith@usgs.gov","contributorId":1560,"corporation":false,"usgs":true,"family":"Smith","given":"Steven","email":"sgsmith@usgs.gov","middleInitial":"G.","affiliations":[],"preferred":true,"id":468072,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Ault, Jerald S.","contributorId":59286,"corporation":false,"usgs":true,"family":"Ault","given":"Jerald","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":468077,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70044371,"text":"70044371 - 2012 - Short seed longevity, variable germination conditions, and infrequent establishment events provide a narrow window for Yucca brevifolia (Agavaceae) recruitment","interactions":[],"lastModifiedDate":"2013-05-03T10:37:12","indexId":"70044371","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":724,"text":"American Journal of Botany","active":true,"publicationSubtype":{"id":10}},"title":"Short seed longevity, variable germination conditions, and infrequent establishment events provide a narrow window for Yucca brevifolia (Agavaceae) recruitment","docAbstract":"PREMISE OF THE STUDY: The future of long-lived stand-forming desert plants such as Yucca brevifolia (Joshua tree) has come into question in light of climate variation and landscape-scale disturbances such as wildfire. Understanding plant establishment dynamics is important for mitigating the impacts of disturbances and promoting revegetation. • METHODS: We placed Y. brevifolia seeds in shallow caches and manipulated granivore access, nurse shrub effects, and the season of cache placement to determine conditions for seed germination and seedling establishment. • KEY RESULTS: Greatest seedling emergence occurred during spring and summer, when increased soil moisture was accompanied by warm soil temperatures. Late winter-spring emergence for cached seeds was enhanced beneath shrub canopies, but seedling survival declined beneath shrubs as temperatures increased in spring. Germinability of seed remaining in the soil was reduced from 50-68% after 12 mo residence time in soil and declined to <3% after 40 mo. Following dispersal from parent plants, seeds are either removed by granivores or lose germinability, imposing substantial losses of potential germinants. • CONCLUSIONS: Specific germination and establishment requirements impose stringent limits on recruitment rates for Y. brevifolia. Coupled with infrequent seed availability, the return rates to prefire densities and demographic structure may require decades to centuries, especially in light of potential changes to regional desert climate in combination with the potential for fire recurrence. Demographic patterns are predicted to vary spatially in response to environmental variability that limits recruitment and may already be apparent among extant populations.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"American Journal of Botany","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Botanical Society of America","doi":"10.3732/ajb.1200099","usgsCitation":"Bryant, M., Reynolds, J., DeFalco, L., and Esque, T., 2012, Short seed longevity, variable germination conditions, and infrequent establishment events provide a narrow window for Yucca brevifolia (Agavaceae) recruitment: American Journal of Botany, v. 99, no. 10, p. 1647-1654, https://doi.org/10.3732/ajb.1200099.","productDescription":"8 p.","startPage":"1647","endPage":"1654","numberOfPages":"8","ipdsId":"IP-041411","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":271790,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":271789,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.3732/ajb.1200099"}],"country":"United States","volume":"99","issue":"10","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5184dc65e4b04d6ec94d62b9","contributors":{"authors":[{"text":"Bryant, M.","contributorId":94949,"corporation":false,"usgs":true,"family":"Bryant","given":"M.","email":"","affiliations":[],"preferred":false,"id":475390,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Reynolds, J.","contributorId":63766,"corporation":false,"usgs":true,"family":"Reynolds","given":"J.","affiliations":[],"preferred":false,"id":475389,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"DeFalco, Lesley A.","contributorId":42270,"corporation":false,"usgs":true,"family":"DeFalco","given":"Lesley A.","affiliations":[],"preferred":false,"id":475388,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Esque, Todd C. tesque@usgs.gov","contributorId":3221,"corporation":false,"usgs":true,"family":"Esque","given":"Todd C.","email":"tesque@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":475387,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70040316,"text":"70040316 - 2012 - Eastern mosquitofish resists invasion by nonindigenous poeciliids through agonistic behaviors","interactions":[],"lastModifiedDate":"2012-10-17T17:16:16","indexId":"70040316","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1018,"text":"Biological Invasions","active":true,"publicationSubtype":{"id":10}},"title":"Eastern mosquitofish resists invasion by nonindigenous poeciliids through agonistic behaviors","docAbstract":"Florida is a hotspot for nonindigenous fishes with over 30 species established, although few of these are small-bodied species. One hypothesis for this pattern is that biotic resistance of native species is reducing the success of small-bodied, introduced fishes. The eastern mosquitofish Gambusia holbrooki is common in many freshwater habitats in Florida and although small-bodied (<50 mm), it is a predator and aggressive competitor. We conducted four mesocosm experiments to examine the potential for biotic resistance by eastern mosquitofish to two small-bodied nonindigenous fishes, variable platyfish (Xiphophorus variatus) and swordtail (X. hellerii). Experiments tested: (1) effect of eastern mosquitofish density on adult survival, (2) effect of eastern mosquitofish on a stage-structured population, (3) role of habitat structural complexity on nonindigenous adult survival, and (4) behavioral effects of eastern mosquitofish presence and habitat complexity. Eastern mosquitofish attacked and killed non-native poeciliids with especially strong effects on juveniles of both species. Higher eastern mosquitofish density resulted in greater effects. Predation on swordtails increased with increasing habitat complexity. Eastern mosquitofish also actively drove swordtails from cover, which could expose non-native fish to other predators under field conditions. Our results suggest that eastern mosquitofish may limit invasion success.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Biological Invasions","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Springer","publisherLocation":"Amsterdam, Netherlands","doi":"10.1007/s10530-012-0176-2","usgsCitation":"Thompson, K.A., Hill, J., and Nico, L.G., 2012, Eastern mosquitofish resists invasion by nonindigenous poeciliids through agonistic behaviors: Biological Invasions, v. 14, no. 7, p. 1515-1529, https://doi.org/10.1007/s10530-012-0176-2.","productDescription":"15 p.","startPage":"1515","endPage":"1529","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":262676,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262650,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s10530-012-0176-2"}],"country":"United States","state":"Florida","volume":"14","issue":"7","noUsgsAuthors":false,"publicationDate":"2012-02-04","publicationStatus":"PW","scienceBaseUri":"507edffee4b022001d87bb65","contributors":{"authors":[{"text":"Thompson, Kevin A.","contributorId":81744,"corporation":false,"usgs":true,"family":"Thompson","given":"Kevin","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":468062,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hill, Jeffrey E.","contributorId":36673,"corporation":false,"usgs":true,"family":"Hill","given":"Jeffrey E.","affiliations":[],"preferred":false,"id":468061,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Nico, Leo G. 0000-0002-4488-7737 lnico@usgs.gov","orcid":"https://orcid.org/0000-0002-4488-7737","contributorId":2913,"corporation":false,"usgs":true,"family":"Nico","given":"Leo","email":"lnico@usgs.gov","middleInitial":"G.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":false,"id":468060,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040312,"text":"70040312 - 2012 - Estimating pesticide sampling rates by the polar organic chemical integrative sampler (POCIS) in the presence of natural organic matter and varying hydrodynamic conditions","interactions":[],"lastModifiedDate":"2012-10-17T17:16:16","indexId":"70040312","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1555,"text":"Environmental Pollution","active":true,"publicationSubtype":{"id":10}},"title":"Estimating pesticide sampling rates by the polar organic chemical integrative sampler (POCIS) in the presence of natural organic matter and varying hydrodynamic conditions","docAbstract":"The polar organic chemical integrative sampler (POCIS) was calibrated to monitor pesticides in water under controlled laboratory conditions. The effect of natural organic matter (NOM) on the sampling rates (<i>R<sub>s</sub></i>) was evaluated in microcosms containing <0.1&ndash;5 mg L<sup>-1</sup> of total organic carbon (TOC). The effect of hydrodynamics was studied by comparing <i>R<sub>s</sub></i> values measured in stirred (SBE) and quiescent (QBE) batch experiments and a flow-through system (FTS). The level of NOM in the water used in these experiments had no effect on the magnitude of the pesticide sampling rates (<i>p</i> > 0.05). However, flow velocity and turbulence significantly increased the sampling rates of the pesticides in the FTS and SBE compared to the QBE (<i>p</i> < 0.001). The calibration data generated can be used to derive pesticide concentrations in water from POCIS deployed in stagnant and turbulent environmental systems without correction for NOM.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Environmental Pollution","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","publisherLocation":"Amsterdam, Netherlands","doi":"10.1016/j.envpol.2012.05.001","usgsCitation":"Charlestra, L., Amirbahman, A., Courtemanch, D.L., Alvarez, D., and Patterson, H., 2012, Estimating pesticide sampling rates by the polar organic chemical integrative sampler (POCIS) in the presence of natural organic matter and varying hydrodynamic conditions: Environmental Pollution, v. 169, p. 98-104, https://doi.org/10.1016/j.envpol.2012.05.001.","productDescription":"7 p.","startPage":"98","endPage":"104","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":262689,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262681,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.envpol.2012.05.001"}],"volume":"169","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"50801846e4b0a0242ef285b4","contributors":{"authors":[{"text":"Charlestra, Lucner","contributorId":21407,"corporation":false,"usgs":true,"family":"Charlestra","given":"Lucner","email":"","affiliations":[],"preferred":false,"id":468046,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Amirbahman, Aria","contributorId":44031,"corporation":false,"usgs":true,"family":"Amirbahman","given":"Aria","email":"","affiliations":[],"preferred":false,"id":468048,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Courtemanch, David L.","contributorId":70639,"corporation":false,"usgs":true,"family":"Courtemanch","given":"David","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":468049,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Alvarez, David A.","contributorId":72755,"corporation":false,"usgs":true,"family":"Alvarez","given":"David A.","affiliations":[],"preferred":false,"id":468050,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Patterson, Howard","contributorId":26569,"corporation":false,"usgs":true,"family":"Patterson","given":"Howard","email":"","affiliations":[],"preferred":false,"id":468047,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70040311,"text":"70040311 - 2012 - Passive thermal refugia provided warm water for Florida manatees during the severe winter of 2009-2010","interactions":[],"lastModifiedDate":"2012-10-17T17:16:16","indexId":"70040311","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2663,"text":"Marine Ecology Progress Series","active":true,"publicationSubtype":{"id":10}},"title":"Passive thermal refugia provided warm water for Florida manatees during the severe winter of 2009-2010","docAbstract":"Haloclines induced by freshwater inflow over tidal water have been identified as an important mechanism for maintaining warm water in passive thermal refugia (PTR) used by Florida manatees Trichechus manatus latirostris during winter in extreme southwestern Florida. Record-setting cold during winter 2009&ndash;2010 resulted in an unprecedented number of manatee deaths, adding to concerns that PTR may provide inadequate thermal protection during severe cold periods. Hydrological data from 2009&ndash;2010 indicate that 2 canal systems in the Ten Thousand Islands (TTI) region acted as PTR and maintained warm bottom-water temperatures, even during severe and prolonged cold periods. Aerial survey counts of live and dead manatees in TTI during the winter of 2009&ndash;2010 suggest that these PTR were effective at preventing mass mortality from hypothermia, in contrast to the nearby Everglades region, which lacks similar artificial PTR and showed high manatee carcass counts. Hydrological data from winter 2008&ndash;2009 confirmed earlier findings that without haloclines these artificial PTR may become ineffective as warm-water sites. Tidal pumping of groundwater appears to provide additional heat to bottom water during low tide cycles, but the associated thermal inversion is not observed unless salinity stratification is present. The finding that halocline-driven PTR can maintain warm water even under extreme winter conditions suggests that they may have significant potential as warm-water sites. However, availability and conflicting uses of freshwater and other management issues may make halocline-driven PTR unreliable or difficult to manage during winter.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Marine Ecology Progress Series","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Inter-Research","publisherLocation":"Oldendorf/Luhe, Germany","doi":"10.3354/meps09732","usgsCitation":"Stith, B., Slone, D., de Wit, M., Edwards, H., Langtimm, C., Swain, E., Soderqvist, L., and Reid, J., 2012, Passive thermal refugia provided warm water for Florida manatees during the severe winter of 2009-2010: Marine Ecology Progress Series, v. 462, p. 287-301, https://doi.org/10.3354/meps09732.","productDescription":"5 p.","startPage":"287","endPage":"301","costCenters":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"links":[{"id":474306,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3354/meps09732","text":"Publisher Index Page"},{"id":262677,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262657,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.3354/meps09732","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Florida","volume":"462","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"507ee053e4b022001d87bb8a","contributors":{"authors":[{"text":"Stith, B.M.","contributorId":53741,"corporation":false,"usgs":true,"family":"Stith","given":"B.M.","email":"","affiliations":[],"preferred":false,"id":468042,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Slone, D. H. 0000-0002-9903-9727","orcid":"https://orcid.org/0000-0002-9903-9727","contributorId":33040,"corporation":false,"usgs":true,"family":"Slone","given":"D. H.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":468040,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"de Wit, M.","contributorId":43223,"corporation":false,"usgs":true,"family":"de Wit","given":"M.","email":"","affiliations":[],"preferred":false,"id":468041,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Edwards, H.H.","contributorId":99924,"corporation":false,"usgs":true,"family":"Edwards","given":"H.H.","email":"","affiliations":[],"preferred":false,"id":468045,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Langtimm, C.A. 0000-0001-8499-5743","orcid":"https://orcid.org/0000-0001-8499-5743","contributorId":71133,"corporation":false,"usgs":false,"family":"Langtimm","given":"C.A.","affiliations":[],"preferred":false,"id":468044,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Swain, E.D. 0000-0001-7168-708X","orcid":"https://orcid.org/0000-0001-7168-708X","contributorId":29007,"corporation":false,"usgs":true,"family":"Swain","given":"E.D.","affiliations":[],"preferred":false,"id":468039,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Soderqvist, L.E.","contributorId":16696,"corporation":false,"usgs":true,"family":"Soderqvist","given":"L.E.","affiliations":[],"preferred":false,"id":468038,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Reid, J.P. 0000-0002-8497-1132","orcid":"https://orcid.org/0000-0002-8497-1132","contributorId":59372,"corporation":false,"usgs":true,"family":"Reid","given":"J.P.","affiliations":[],"preferred":false,"id":468043,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70040375,"text":"70040375 - 2012 - The genome of Chelonid herpesvirus 5 harbors atypical genes","interactions":[],"lastModifiedDate":"2017-10-04T14:05:00","indexId":"70040375","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"The genome of Chelonid herpesvirus 5 harbors atypical genes","docAbstract":"<p><span>The Chelonid fibropapilloma-associated herpesvirus (CFPHV; ChHV5) is believed to be the causative agent of fibropapillomatosis (FP), a neoplastic disease of marine turtles. While clinical signs and pathology of FP are well known, research on ChHV5 has been impeded because no cell culture system for its propagation exists. We have cloned a BAC containing ChHV5 in pTARBAC2.1 and determined its nucleotide sequence. Accordingly, ChHV5 has a type D genome and its predominant gene order is typical for the&nbsp;</span><i>varicellovirus</i><span>&nbsp;genus within the</span><i>alphaherpesvirinae</i><span>. However, at least four genes that are atypical for an alphaherpesvirus genome were also detected, i.e. two members of the C-type lectin-like domain superfamily (F-lec1, F-lec2), an orthologue to the mouse cytomegalovirus M04 (F-M04) and a viral sialyltransferase (F-sial). Four lines of evidence suggest that these atypical genes are truly part of the ChHV5 genome: (1) the pTARBAC insertion interrupted the UL52 ORF, leaving parts of the gene to either side of the insertion and suggesting that an intact molecule had been cloned. (2) Using FP-associated UL52 (F-UL52) as an anchor and the BAC-derived sequences as a means to generate primers, overlapping PCR was performed with tumor-derived DNA as template, which confirmed the presence of the same stretch of &ldquo;atypical&rdquo; DNA in independent FP cases. (3) Pyrosequencing of DNA from independent tumors did not reveal previously undetected viral sequences, suggesting that no apparent loss of viral sequence had happened due to the cloning strategy. (4) The simultaneous presence of previously known ChHV5 sequences and F-sial as well as F-M04 sequences was also confirmed in geographically distinct Australian cases of FP. Finally, transcripts of F-sial and F-M04 but not transcripts of lytic viral genes were detected in tumors from Hawaiian FP-cases. Therefore, we suggest that F-sial and F-M04 may play a role in FP pathogenesis</span></p>","language":"English","publisher":"PLoS","doi":"10.1371/journal.pone.0046623","usgsCitation":"Ackermann, M., Koriabine, M., Hartmann-Fritsch, F., de Jong, P.J., Lewis, T.D., Schetle, N., Work, T.M., Dagenais, J., Balazs, G.H., and Leong, J.C., 2012, The genome of Chelonid herpesvirus 5 harbors atypical genes: PLoS ONE, v. 7, no. 10, e46623; 15 p., https://doi.org/10.1371/journal.pone.0046623.","productDescription":"e46623; 15 p.","onlineOnly":"Y","additionalOnlineFiles":"N","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":474313,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0046623","text":"Publisher Index Page"},{"id":262699,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United 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Fabienne","contributorId":84614,"corporation":false,"usgs":true,"family":"Hartmann-Fritsch","given":"Fabienne","email":"","affiliations":[],"preferred":false,"id":468212,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"de Jong, Pieter J.","contributorId":86211,"corporation":false,"usgs":true,"family":"de Jong","given":"Pieter","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":468213,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lewis, Teresa D.","contributorId":38407,"corporation":false,"usgs":true,"family":"Lewis","given":"Teresa","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":468209,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Schetle, Nelli","contributorId":48805,"corporation":false,"usgs":true,"family":"Schetle","given":"Nelli","email":"","affiliations":[],"preferred":false,"id":468210,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Work, Thierry M. 0000-0002-4426-9090 thierry_work@usgs.gov","orcid":"https://orcid.org/0000-0002-4426-9090","contributorId":1187,"corporation":false,"usgs":true,"family":"Work","given":"Thierry","email":"thierry_work@usgs.gov","middleInitial":"M.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":468207,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Dagenais, Julie 0000-0001-5560-9946 jdagenais@usgs.gov","orcid":"https://orcid.org/0000-0001-5560-9946","contributorId":5955,"corporation":false,"usgs":true,"family":"Dagenais","given":"Julie","email":"jdagenais@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":468208,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Balazs, George H.","contributorId":88195,"corporation":false,"usgs":true,"family":"Balazs","given":"George","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":468214,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Leong, Jo-Ann C.","contributorId":96135,"corporation":false,"usgs":true,"family":"Leong","given":"Jo-Ann","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":468215,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70040353,"text":"70040353 - 2012 - An economic approach to assessing import policies designed to prevent the arrival of invasive species: the case of Puccinia psidii in Hawai'i","interactions":[],"lastModifiedDate":"2013-11-15T10:49:43","indexId":"70040353","displayToPublicDate":"2012-10-17T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1563,"text":"Environmental Science and Policy","active":true,"publicationSubtype":{"id":10}},"title":"An economic approach to assessing import policies designed to prevent the arrival of invasive species: the case of Puccinia psidii in Hawai'i","docAbstract":"Since its first documented introduction to Hawai&lsquo;i in 2005, the rust fungus <i>Puccinia psidii</i> has already severely damaged <i>Syzygium jambos</i> (Indian rose apple) trees and the federally endangered <i>Eugenia koolauensis</i> (nioi). Fortunately, the particular strain has yet to cause serious damage to <i>Metrosideros polymorpha</i> (&lsquo;&#333;hi&lsquo;a), which comprises roughly 80% of the state's native forests and covers 400,000&#xA0;ha. Although the rust has affected less than 5% of Hawaii's &lsquo;&#333;hi&lsquo;a trees thus far, the introduction of more virulent strains and the genetic evolution of the current strain are still possible. Since the primary pathway of introduction is Myrtaceae plant material imported from outside the state, potential damage to &lsquo;&#333;hi&lsquo;a can be minimized by regulating those high-risk imports. We discuss the economic impact on the state's florist, nursery, landscaping, and forest plantation industries of a proposed rule that would ban the import of non-seed Myrtaceae plant material and require a 1-year quarantine of seeds. Our analysis suggests that the benefits to the forest plantation industry of a complete ban on non-seed material would likely outweigh the costs to other affected sectors, even without considering the reduction in risk to &lsquo;&#333;hi&lsquo;a. Incorporating the value of &lsquo;&#333;hi&lsquo;a protection would further increase the benefit&ndash;cost ratio in favor of an import ban.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Environmental Science and Policy","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","publisherLocation":"Amsterdam, Netherlands","doi":"10.1016/j.envsci.2012.03.006","usgsCitation":"Burnett, K., D’Evelyn, S., Loope, L., and Wada, C.A., 2012, An economic approach to assessing import policies designed to prevent the arrival of invasive species: the case of Puccinia psidii in Hawai'i: Environmental Science and Policy, v. 19-20, no. May-June 2012, p. 158-168, https://doi.org/10.1016/j.envsci.2012.03.006.","productDescription":"11 p.","startPage":"158","endPage":"168","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":262662,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":262643,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.envsci.2012.03.006","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Hawai'i","volume":"19-20","issue":"May-June 2012","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"507edfaee4b022001d87bb41","contributors":{"authors":[{"text":"Burnett, Kimberly","contributorId":26565,"corporation":false,"usgs":true,"family":"Burnett","given":"Kimberly","email":"","affiliations":[],"preferred":false,"id":468147,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"D’Evelyn, Sean","contributorId":43221,"corporation":false,"usgs":true,"family":"D’Evelyn","given":"Sean","email":"","affiliations":[],"preferred":false,"id":468149,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Loope, Lloyd","contributorId":29781,"corporation":false,"usgs":true,"family":"Loope","given":"Lloyd","affiliations":[],"preferred":false,"id":468148,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Wada, Christopher A.","contributorId":91352,"corporation":false,"usgs":true,"family":"Wada","given":"Christopher","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":468150,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
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