{"pageNumber":"1618","pageRowStart":"40425","pageSize":"25","recordCount":184582,"records":[{"id":70156770,"text":"70156770 - 2012 - Contributions of Arctic PRISM to monitoring western hemispheric shorebirds","interactions":[],"lastModifiedDate":"2016-03-30T15:01:09","indexId":"70156770","displayToPublicDate":"2012-09-02T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Contributions of Arctic PRISM to monitoring western hemispheric shorebirds","docAbstract":"<p><span>Long-term monitoring of populations is of paramount importance to understanding responses oforganisms to global environmental change and to evaluating whether conservation practices are yielding intended results through time (Wiens 2009). The population status of many shorebird species, the focus of this volume, remain poorly known. Long-distance migrant shorebirds have proven particularly difficult to monitor, in part because of their highly migratory nature and ranges that extend into highly inaccessible regions. As migrant shorebirds travel the length of the hemisphere, they congregate and disperse in ways that vary among species, locations, and years, presenting serious challenges to designing and implementing monitoring programs. Rigorous field and quantitative methods that estimate population size and monitor trends are vitally needed to direct and evaluate effective conservation measures. Many management efforts depend on unbiased population size estimates; for example, the shorebird conservation plans for both Canada and the United States seek to restore populations to levels calculated for the 1970s based on the best information available from existing surveys. Further, federal wildlife agencies within the United States and Canada have mandates to understand the state of their nations' resources under various conventions for the protection of migratory birds. Accurate estimates of population size are vital statistics for a variety of conservation activities, such as prioritizing species for conservation action and setting management targets. Areas of essential habitat, such as those designated under the Western Hemisphere Shorebird Reserve Network, the Important Bird Areas program of BirdLife International and the National Audubon Society, or Canada's National Wildlife Areas program, are all evaluated on the basis ofproportions of species' populations which they contain. The size, and trends in size, ofa species' population are considered key information for assessing its vulnerability and subsequent listing under the U.S. Endangered Species Act and the Canadian Species at Risk Act. To meet the need for information on population size and trends, shorebird biologists from Canada and the United States proposed a shared blueprint for shorebird monitoring across the Western Hemisphere in the late 1990s; this effort was undertaken in concert with the development of the Canadian and U.S. Shorebird Conservation Plans (Donaldson et al. 2000, Brown et aL 2001). Soon thereafter, partners in the monitoring effort adopted the name \"Program for Regional and International Shorebird Monitoring\" (PRISM). Among the primary objectives of PRISM were to estimate the population sizes and trends of breeding North American shorebirds and describe their distributions (Bart et al. 2002). PRISM members evaluated ongoing and potential monitoring approaches to address 74 taxa (including subspecies) and proposed a combination of arctic andboreal breeding surveys, temperate breeding and non-breeding surveys, and neotropical surveys.</span></p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Arctic shorebirds in North America: a decade of monitoring","language":"English","publisher":"University of California Press","usgsCitation":"Skagen, S.K., Smith, P., Andres, B.A., Donaldson, G., and Brown, S., 2012, Contributions of Arctic PRISM to monitoring western hemispheric shorebirds, chap. <i>of</i> Arctic shorebirds in North America: a decade of monitoring.","onlineOnly":"N","additionalOnlineFiles":"N","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":307642,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"55e034b5e4b0f42e3d040df7","contributors":{"authors":[{"text":"Skagen, Susan K. 0000-0002-6744-1244 skagens@usgs.gov","orcid":"https://orcid.org/0000-0002-6744-1244","contributorId":2009,"corporation":false,"usgs":true,"family":"Skagen","given":"Susan","email":"skagens@usgs.gov","middleInitial":"K.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":false,"id":570448,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Smith, Paul A.","contributorId":73477,"corporation":false,"usgs":true,"family":"Smith","given":"Paul A.","affiliations":[],"preferred":false,"id":570449,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Andres, Brad A.","contributorId":68811,"corporation":false,"usgs":true,"family":"Andres","given":"Brad","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":570450,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Donaldson, Garry","contributorId":101554,"corporation":false,"usgs":true,"family":"Donaldson","given":"Garry","email":"","affiliations":[],"preferred":false,"id":570451,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Brown, Stephen","contributorId":40096,"corporation":false,"usgs":true,"family":"Brown","given":"Stephen","affiliations":[],"preferred":false,"id":570452,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70199781,"text":"70199781 - 2012 - Leaching of elements from bottom ash, economizer fly ash, and fly ash from two coal-fired power plants","interactions":[],"lastModifiedDate":"2018-09-27T16:27:08","indexId":"70199781","displayToPublicDate":"2012-09-01T16:22:22","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2033,"text":"International Journal of Coal Geology","active":true,"publicationSubtype":{"id":10}},"title":"Leaching of elements from bottom ash, economizer fly ash, and fly ash from two coal-fired power plants","docAbstract":"<p><span>To assess how elements leach from several types of&nbsp;<a title=\"Learn more about Coal Combustion\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/coal-combustion\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/coal-combustion\">coal combustion</a>&nbsp;products (CCPs) and to better understand possible risks from CCP use or disposal,&nbsp;<a title=\"Learn more about Coal\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/coal\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/coal\">coal</a>&nbsp;ashes were sampled from two bituminous-coal-fired power plants. One plant located in Ohio burns high-sulfur (about 3.9%) Upper&nbsp;<a title=\"Learn more about Pennsylvanian\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/pennsylvanian\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/pennsylvanian\">Pennsylvanian</a>&nbsp;Pittsburgh coal from the Monongahela Group of the Central Appalachian Basin; the other in New Mexico burns low-sulfur (about 0.76%)&nbsp;<a title=\"Learn more about Upper Cretaceous\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/upper-cretaceous\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/upper-cretaceous\">Upper Cretaceous</a>&nbsp;Fruitland Formation coal from the San Juan Basin, Colorado Plateau. The sampled CCPs from the Ohio plant were&nbsp;<a title=\"Learn more about bottom ash\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/bottom-ash\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/bottom-ash\">bottom ash</a>&nbsp;(BA), economizer&nbsp;</span><a title=\"Learn more about fly ash\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/fly-ash\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/fly-ash\">fly ash</a><span>&nbsp;(EFA), and fly ash (FA); the sampled CCPs from the New Mexico plant were BA, mixed FA/EFA, FA, and cyclone-separated coarse and fine fractions of a FA/EFA and FA blend. Subsamples of each ash were leached using the long-term leaching (60-day duration) component of the synthetic groundwater leaching procedure (SGLP) or the toxicity characteristic leaching procedure (TCLP, 18-hour duration). These ashes were all alkaline.&nbsp;<a title=\"Learn more about leachate\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/leachate\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/leachate\">Leachate</a>&nbsp;concentrations and leachabilities of the elements from the CCPs were similar between corresponding CCP types (BA, EFA, and FA) from each plant. The leachabilities of most elements were lowest in BA (least leachable) and increased from EFA to FA (most leachable). Ca and Sr were leached more from EFA than from either BA or FA. Leachability of most elements also increased as FA particle size decreased, possibly due in part to increasing specific surface areas. Several oxyanion-forming elements (As, Mo, Se, U, and V) leached more under SGLP than under TCLP; the opposite was true for most other elements analyzed.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.coal.2011.10.007","usgsCitation":"Jones, K.B., Ruppert, L.F., and Swanson, S.M., 2012, Leaching of elements from bottom ash, economizer fly ash, and fly ash from two coal-fired power plants: International Journal of Coal Geology, v. 94, p. 337-348, https://doi.org/10.1016/j.coal.2011.10.007.","productDescription":"12 p.","startPage":"337","endPage":"348","ipdsId":"IP-030166","costCenters":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":357867,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"94","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5c10bd73e4b034bf6a7efe17","contributors":{"authors":[{"text":"Jones, Kevin B. 0000-0002-6386-2623 kevinjones@usgs.gov","orcid":"https://orcid.org/0000-0002-6386-2623","contributorId":565,"corporation":false,"usgs":true,"family":"Jones","given":"Kevin","email":"kevinjones@usgs.gov","middleInitial":"B.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":746578,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ruppert, Leslie F. 0000-0002-7453-1061 lruppert@usgs.gov","orcid":"https://orcid.org/0000-0002-7453-1061","contributorId":660,"corporation":false,"usgs":true,"family":"Ruppert","given":"Leslie","email":"lruppert@usgs.gov","middleInitial":"F.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true},{"id":245,"text":"Eastern Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":746579,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Swanson, Sharon M. 0000-0002-4235-1736 smswanson@usgs.gov","orcid":"https://orcid.org/0000-0002-4235-1736","contributorId":590,"corporation":false,"usgs":true,"family":"Swanson","given":"Sharon","email":"smswanson@usgs.gov","middleInitial":"M.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":746580,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70200749,"text":"70200749 - 2012 - Problem of the Love‐Gannon relation between the asymmetric disturbance field and Dst","interactions":[],"lastModifiedDate":"2018-10-30T15:42:42","indexId":"70200749","displayToPublicDate":"2012-09-01T15:42:35","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2313,"text":"Journal of Geophysical Research A: Space Physics","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Problem of the Love‐Gannon relation between the asymmetric disturbance field and <i>Dst</i>","title":"Problem of the Love‐Gannon relation between the asymmetric disturbance field and Dst","docAbstract":"<p><span>Love and Gannon (2009) discovered that statistically, over a fifty year period the difference in the dawn and dusk disturbance‐field&nbsp;</span><i>H</i><span>&nbsp;component at low latitudes (hourly averaged) is linearly proportional to&nbsp;</span><i>Dst.</i><span>&nbsp;If the difference is designated by&nbsp;</span><i>δ</i><sub><i>DD</i></sub><span>&nbsp;in units of nT/R</span><sub>E</sub><span>, then the Love‐Gannon (L‐G) relation is&nbsp;</span><i>δ</i><sub><i>DD</i></sub><span>&nbsp;=&nbsp;</span><i>−</i><span>0.2&nbsp;</span><i>Dst.</i><span>&nbsp;At any time departures from the relation can be large. Nonetheless, the relation is evident for all values of&nbsp;</span><i>Dst</i><span>&nbsp;and persists throughout magnetic storms, both the main phase and the recovery phase. The Love‐Gannon discovery presents a problem to current understanding of the relation between the causes of&nbsp;</span><i>δ</i><sub><i>DD</i></sub><span>&nbsp;and&nbsp;</span><i>Dst</i><span>&nbsp;because the dawn dusk asymmetry in the disturbance field is presumably governed by a long‐established magnetosphere‐ionosphere coupling theory which predicts a characteristic time scale (the shielding time) of less than an hour whereas the characteristic time scale for&nbsp;</span><i>Dst</i><span>&nbsp;(the ring current decay time) is more like ten hours. Thus, without forcing both time scales toward each other to the limits of their ranges, a linear proportionality between&nbsp;</span><i>δ</i><sub><i>DD</i></sub><span>&nbsp;and&nbsp;</span><i>Dst</i><span>&nbsp;cannot be derived from the current understanding of the causes of the asymmetry and the ring current. This conclusion is the paper's main contribution. In addition, we attempt to get around the conflict of time scales by looking at other possibilities for generating&nbsp;</span><i>δ</i><sub><i>DD</i></sub><span>&nbsp;that depend directly on the ring current. The most promising of these is the possibility that the ring current decay mechanism creates a quasi‐permanent, local‐time modification of the ring current compared to what it would be in the absence of the decay mechanism and that this modification causes a field‐aligned current that closes through the ionosphere and generates the asymmetry&nbsp;</span><i>δ</i><sub><i>DD</i></sub><span>. This idea has the virtue of coupling the asymmetry directly to the ring current and of accounting for the persistence of the L‐G proportionality through the recovery phase of magnetic storms.</span></p>","language":"English","publisher":"AGU","doi":"10.1029/2012JA017879","usgsCitation":"Siscoe, G.L., Love, J.J., and Gannon, J., 2012, Problem of the Love‐Gannon relation between the asymmetric disturbance field and Dst: Journal of Geophysical Research A: Space Physics, v. 117, no. A9, A09216; 11 p., https://doi.org/10.1029/2012JA017879.","productDescription":"A09216; 11 p.","ipdsId":"IP-039196 ","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":358987,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"117","issue":"A9","noUsgsAuthors":false,"publicationDate":"2012-09-06","publicationStatus":"PW","scienceBaseUri":"5c10bd73e4b034bf6a7efe19","contributors":{"authors":[{"text":"Siscoe, G. L.","contributorId":210281,"corporation":false,"usgs":false,"family":"Siscoe","given":"G.","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":750359,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Love, Jeffrey J. 0000-0002-3324-0348 jlove@usgs.gov","orcid":"https://orcid.org/0000-0002-3324-0348","contributorId":760,"corporation":false,"usgs":true,"family":"Love","given":"Jeffrey","email":"jlove@usgs.gov","middleInitial":"J.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":750360,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Gannon, J.L.","contributorId":78275,"corporation":false,"usgs":true,"family":"Gannon","given":"J.L.","email":"","affiliations":[],"preferred":false,"id":750361,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70046575,"text":"70046575 - 2012 - Review and update of the applications of organic petrology: Part 1, geological applications","interactions":[],"lastModifiedDate":"2013-07-16T15:31:21","indexId":"70046575","displayToPublicDate":"2012-09-01T15:25:44","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2033,"text":"International Journal of Coal Geology","active":true,"publicationSubtype":{"id":10}},"title":"Review and update of the applications of organic petrology: Part 1, geological applications","docAbstract":"Organic petrology developed as coal petrology at the beginning of the 20th century dedicated mainly to the study of coals because of their utilization in industry. Coal petrology was then considered a branch of coal science. Later, with the development of specialized nomenclature, classification of coal components, and the standardization and improvement of analytical (microscopical) methods, this discipline expanded in interests and name, becoming organic petrology. Organic petrology carries a broader context, being as well a tool applied in the study of dispersed organic matter in sedimentary rocks due to its importance in exploration for fossil fuel resources. At present, organic petrology is a discipline widely recognized for its role in fundamental and applied research with respect to both coal utilization and in geosciences. Throughout the 20th century several important monographs have been published on the discipline of organic petrology, including “Stach's textbook of coal petrology” (1st edition 1935, 2nd 1975, 3rd 1982), updated as the more general “Organic petrology” by Taylor et al. (1998). More recently, the text “Applied coal petrology: the role of petrology in coal utilization” was published by Suárez-Ruiz and Crelling (2008). This review is the first in a two-part review series that describes and updates the role of organic petrology in geosciences. A second part complementing this one and focused on the applications of organic petrology to other scientific fields will follow.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"International Journal of Coal Geology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","doi":"10.1016/j.coal.2012.02.004","usgsCitation":"Suarez-Ruiz, I., Flores, D., Mendonça Filho, J., and Hackley, P.C., 2012, Review and update of the applications of organic petrology: Part 1, geological applications: International Journal of Coal Geology, v. 99, p. 54-112, https://doi.org/10.1016/j.coal.2012.02.004.","productDescription":"59 p.","startPage":"54","endPage":"112","ipdsId":"IP-033219","costCenters":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":275091,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":275090,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.coal.2012.02.004"}],"volume":"99","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51e66b6be4b017be1ba347bc","contributors":{"authors":[{"text":"Suarez-Ruiz, Isabel","contributorId":66989,"corporation":false,"usgs":true,"family":"Suarez-Ruiz","given":"Isabel","email":"","affiliations":[],"preferred":false,"id":479818,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Flores, Deolinda","contributorId":31287,"corporation":false,"usgs":true,"family":"Flores","given":"Deolinda","email":"","affiliations":[],"preferred":false,"id":479817,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mendonça Filho, João Graciano","contributorId":102768,"corporation":false,"usgs":true,"family":"Mendonça Filho","given":"João Graciano","affiliations":[],"preferred":false,"id":479819,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hackley, Paul C. 0000-0002-5957-2551 phackley@usgs.gov","orcid":"https://orcid.org/0000-0002-5957-2551","contributorId":592,"corporation":false,"usgs":true,"family":"Hackley","given":"Paul","email":"phackley@usgs.gov","middleInitial":"C.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true},{"id":255,"text":"Energy Resources Program","active":true,"usgs":true}],"preferred":true,"id":479816,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70045241,"text":"70045241 - 2012 - Thiamine deficiency: a viable hypothesis for paralytic syndrome in Baltic birds. Commentary on Sonne et al., 2012. A review of the factors causing paralysis in wild birds: implications for the paralytic syndrome observed in the Baltic Sea. <i>Science of the Total Environment</i> 416:32-39","interactions":[],"lastModifiedDate":"2017-01-31T15:03:17","indexId":"70045241","displayToPublicDate":"2012-09-01T13:38:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3352,"text":"Science of the Total Environment","active":true,"publicationSubtype":{"id":10}},"title":"Thiamine deficiency: a viable hypothesis for paralytic syndrome in Baltic birds. Commentary on Sonne et al., 2012. A review of the factors causing paralysis in wild birds: implications for the paralytic syndrome observed in the Baltic Sea. <i>Science of the Total Environment</i> 416:32-39","docAbstract":"<p>In a recent assessment of hypotheses presented by Balk et al. (2009) regarding the etiology of a paralytic disease inflicting bird populations in Northern Europe, Sonne et al. (2012) “call for a major coordinated effort on research…” to “… integrate clinical, physiological, ecological and demographic investigations at all levels to better dissect the causes, the effects on ecosystems and potential impact on affected populations.” Further, they offer, “This should be undertaken before thiamine deficiency can be considered to constitute a serious problem to e.g. the Baltic ecosystems.” While we agree that holistic approaches to environmental research and management are essential, our experience suggests that waiting for definitive results from long-term research and monitoring programs prior to “consideration” of thiamine deficiency as a major factor in the paralytic disease observed in wild bird populations would hinder the ability of natural resource managers to understand and mitigate declining trends in avian population abundance.</p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.scitotenv.2012.06.080","usgsCitation":"Tillitt, D.E., Kraft, C.E., Honeyfield, D.C., and Fitzsimons, J.D., 2012, Thiamine deficiency: a viable hypothesis for paralytic syndrome in Baltic birds. Commentary on Sonne et al., 2012. A review of the factors causing paralysis in wild birds: implications for the paralytic syndrome observed in the Baltic Sea. <i>Science of the Total Environment</i> 416:32-39: Science of the Total Environment, v. 433, p. 561-562, https://doi.org/10.1016/j.scitotenv.2012.06.080.","productDescription":"2 p.","startPage":"561","endPage":"562","numberOfPages":"2","ipdsId":"IP-036090","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":281025,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":281023,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.scitotenv.2012.06.080"}],"volume":"433","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"53cd78e6e4b0b2908510c766","contributors":{"authors":[{"text":"Tillitt, Donald E. 0000-0002-8278-3955 dtillitt@usgs.gov","orcid":"https://orcid.org/0000-0002-8278-3955","contributorId":1875,"corporation":false,"usgs":true,"family":"Tillitt","given":"Donald","email":"dtillitt@usgs.gov","middleInitial":"E.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":477111,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kraft, Clifford E.","contributorId":106414,"corporation":false,"usgs":true,"family":"Kraft","given":"Clifford","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":477114,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Honeyfield, Dale C. 0000-0003-3034-2047 honeyfie@usgs.gov","orcid":"https://orcid.org/0000-0003-3034-2047","contributorId":2774,"corporation":false,"usgs":true,"family":"Honeyfield","given":"Dale","email":"honeyfie@usgs.gov","middleInitial":"C.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":477112,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Fitzsimons, John D.","contributorId":94267,"corporation":false,"usgs":true,"family":"Fitzsimons","given":"John","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":477113,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70118568,"text":"70118568 - 2012 - Antioxidant effects of selenium on lung injury in paraquat intoxicated rats","interactions":[],"lastModifiedDate":"2014-07-29T12:38:37","indexId":"70118568","displayToPublicDate":"2012-09-01T12:35:40","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1257,"text":"Clinical Toxicology","active":true,"publicationSubtype":{"id":10}},"title":"Antioxidant effects of selenium on lung injury in paraquat intoxicated rats","docAbstract":"<p>CONTEXT: Paraquat (PQ) causes lethal intoxication by inducing oxidant injury to the lung. Selenium is a cofactor for glutathione peroxidase (GPx), which is one of the major endogenous antioxidant enzymes.</p>\n<br/>\n<p>OBJECTIVE: To determine whether selenium post-treatment activates GPx, decreases lung injury, and improves survival in PQ intoxicated rats.</p>\n<br/>\n<p>MATERIALS AND METHODS: Male Spraque-Dawley rats were categorized into three groups: sham (n = 6), PQ (n = 12), and PQ + Se (n = 12). In the PQ and PQ + Se groups, 50 mg/kg of PQ was administered intraperitoneally. After 10 minutes, 60 μg/kg of Se (PQ + Se) or saline (PQ) was administered via the tail vein. Six rats per group were euthanized 6 hours or 24 hours later. Lung tissues were harvested for the measurement of GPx activity, reduced glutathione (GSH), glutathione disulfide (GSSG) and malondialdehyde (MDA) and for histological analysis. Using separated set of rats, survival of PQ (n = 10) and PQ + Se (n = 10) were observed for 72 hours.</p>\n<br/>\n<p>RESULTS: GPx activity in the PQ group at the 6-hour and 24-hour time points was lower than in the sham group (p < 0.006). GPx activity in the PQ + Se group at the 6-hour and 24-hour time points was higher than in the PQ group at the same time (p < 0.006). GPx activity in the PQ + Se group at 24 hours was higher than at 6-hour time point and also higher than in the sham group (p < 0.006). The GSH/GSSG ratio in the PQ + Se group at 24 hours was lower than that in the sham group (p < 0.006). MDA levels in the PQ group at 6 hours and 24 hours were higher than in the sham group (p < 0.006). MDA levels at 24 hours in the PQ + Se group was lower than in the PQ group (p < 0.006). Acute lung injury (ALI) scores in the PQ group at 6 hours and 24 hours were higher than in the sham group (p < 0.006). ALI scores at 24 hours in the PQ + Se group were lower than in the PQ group. Survival rates did not differ between PQ and PQ + Se (p = 0.869).</p.\n<br/>\n<p>CONCLUSION: Single dose of selenium post-treatment activates GPx and attenuates lipid peroxidation and lung injury early after paraquat intoxication, but does not improve 72 hours of survival.</p>","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Clinical Toxicology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"American Academy of Clinical Toxicology","publisherLocation":"New York, NY","doi":"10.3109/15563650.2012.708418","usgsCitation":"Kim, K., Suh, G., Kwon, W., Kwak, Y., Lee, K., Lee, H., Jeong, K., and Lee, M.W., 2012, Antioxidant effects of selenium on lung injury in paraquat intoxicated rats: Clinical Toxicology, v. 50, no. 8, p. 749-753, https://doi.org/10.3109/15563650.2012.708418.","productDescription":"5 p.","startPage":"749","endPage":"753","numberOfPages":"5","costCenters":[],"links":[{"id":291304,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":291303,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.3109/15563650.2012.708418"}],"volume":"50","issue":"8","noUsgsAuthors":false,"publicationDate":"2012-08-27","publicationStatus":"PW","scienceBaseUri":"57f7f491e4b0bc0bec0a1060","contributors":{"authors":[{"text":"Kim, K.S.","contributorId":103195,"corporation":false,"usgs":true,"family":"Kim","given":"K.S.","email":"","affiliations":[],"preferred":false,"id":497054,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Suh, G.J.","contributorId":102403,"corporation":false,"usgs":true,"family":"Suh","given":"G.J.","email":"","affiliations":[],"preferred":false,"id":497053,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kwon, W.Y.","contributorId":56568,"corporation":false,"usgs":true,"family":"Kwon","given":"W.Y.","email":"","affiliations":[],"preferred":false,"id":497049,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kwak, Y.H.","contributorId":48491,"corporation":false,"usgs":true,"family":"Kwak","given":"Y.H.","email":"","affiliations":[],"preferred":false,"id":497048,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lee, Kenneth","contributorId":61064,"corporation":false,"usgs":true,"family":"Lee","given":"Kenneth","affiliations":[],"preferred":false,"id":497050,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Lee, H.J.","contributorId":96693,"corporation":false,"usgs":true,"family":"Lee","given":"H.J.","email":"","affiliations":[],"preferred":false,"id":497052,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Jeong, K.Y.","contributorId":22257,"corporation":false,"usgs":true,"family":"Jeong","given":"K.Y.","email":"","affiliations":[],"preferred":false,"id":497047,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Lee, Myung W.","contributorId":84358,"corporation":false,"usgs":true,"family":"Lee","given":"Myung","middleInitial":"W.","affiliations":[],"preferred":false,"id":497051,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70150345,"text":"70150345 - 2012 - Effects of flow dynamics on the aquatic-terrestrial transition zone (ATTZ) of lower Missouri river sandbars with implications for selected biota","interactions":[],"lastModifiedDate":"2015-06-29T10:06:03","indexId":"70150345","displayToPublicDate":"2012-09-01T11:15:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3301,"text":"River Research and Applications","active":true,"publicationSubtype":{"id":10}},"title":"Effects of flow dynamics on the aquatic-terrestrial transition zone (ATTZ) of lower Missouri river sandbars with implications for selected biota","docAbstract":"<p>Sandbars are an important aquatic terrestrial transition zone (ATTZ) in the active channel of rivers that provide a variety of habitat conditions for riverine biota. Channelization and flow regulation in many large rivers have diminished sandbar habitats and their rehabilitation is a priority. We developed sandbar-specific models of discharge-area relationships to determine how changes in flow regime affect the area of different habitat types within the submerged sandbar ATTZ (depth) and exposed sandbar ATTZ (elevation) for a representative sample of Lower Missouri River sandbars. We defined six different structural habitat types within the sandbar ATTZ based on depth or exposed elevation ranges that are important to different biota during at least part of their annual cycle for either survival or reproduction. Scenarios included the modelled natural flow regime, current managed flow regime and two environmental flow options, all modelled within the contemporary river active channel. Thirteen point and wing-dike sandbars were evaluated under four different flow scenarios to explore the effects of flow regime on seasonal habitat availability for foraging of migratory shorebirds and wading birds, nesting of softshell turtles and nursery of riverine fishes. Managed flows provided more foraging habitat for shorebirds and wading birds and more nursery habitat for riverine fishes within the channelized reach sandbar ATTZ than the natural flow regime or modelled environmental flows. Reduced summer flows occurring under natural and environmental flow alternatives increased exposed sandbar nesting habitat for softshell turtle hatchling emergence. Results reveal how management of channelized and flow regulated large rivers could benefit from a modelling framework that couples hydrologic and geomorphic characteristics to predict habitat conditions for a variety of biota.</p>","language":"English","publisher":"John Wiley & Sons","publisherLocation":"Chichester, West Sussex, UK","doi":"10.1002/rra.1492","usgsCitation":"Tracy-Smith, E., Galat, D.L., and Jacobson, R.B., 2012, Effects of flow dynamics on the aquatic-terrestrial transition zone (ATTZ) of lower Missouri river sandbars with implications for selected biota: River Research and Applications, v. 28, no. 7, p. 793-813, https://doi.org/10.1002/rra.1492.","productDescription":"21 p.","startPage":"793","endPage":"813","numberOfPages":"21","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-021713","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":305428,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"28","issue":"7","publishingServiceCenter":{"id":8,"text":"Raleigh PSC"},"noUsgsAuthors":false,"publicationDate":"2011-02-25","publicationStatus":"PW","scienceBaseUri":"55926c9de4b0b6d21dd67783","contributors":{"authors":[{"text":"Tracy-Smith, Emily","contributorId":145409,"corporation":false,"usgs":false,"family":"Tracy-Smith","given":"Emily","email":"","affiliations":[],"preferred":false,"id":556720,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Galat, David L.","contributorId":13711,"corporation":false,"usgs":true,"family":"Galat","given":"David","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":563901,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Jacobson, Robert B. 0000-0002-8368-2064 rjacobson@usgs.gov","orcid":"https://orcid.org/0000-0002-8368-2064","contributorId":1289,"corporation":false,"usgs":true,"family":"Jacobson","given":"Robert","email":"rjacobson@usgs.gov","middleInitial":"B.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":563902,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70133432,"text":"70133432 - 2012 - Ontogenetic and among-individual variation in foraging strategies of northeast Pacific white sharks based on stable isotope analysis","interactions":[],"lastModifiedDate":"2021-01-05T17:46:49.701126","indexId":"70133432","displayToPublicDate":"2012-09-01T10:45:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"Ontogenetic and among-individual variation in foraging strategies of northeast Pacific white sharks based on stable isotope analysis","docAbstract":"<p>There is growing evidence for individuality in dietary preferences and foraging behaviors within populations of various species. This is especially important for apex predators, since they can potentially have wide dietary niches and a large impact on trophic dynamics within ecosystems. We evaluate the diet of an apex predator, the white shark (<em>Carcharodon carcharias</em>), by measuring the stable carbon and nitrogen isotope composition of vertebral growth bands to create lifetime records for 15 individuals from California. Isotopic variations in white shark diets can reflect within-region differences among prey (most importantly related to trophic level), as well as differences in baseline values among the regions in which sharks forage, and both prey and habitat preferences may shift with age. The magnitude of isotopic variation among sharks in our study (&gt;5&permil; for both elements) is too great to be explained solely by geographic differences, and so must reflect differences in prey choice that may vary with sex, size, age and location. Ontogenetic patterns in &delta;<sup>15</sup>N values vary considerably among individuals, and one third of the population fit each of these descriptions: 1) &delta;<sup>15</sup>N values increased throughout life, 2) &delta;<sup>15</sup>N values increased to a plateau at ~5 years of age, and 3) &delta;<sup>15</sup>N values remained roughly constant values throughout life. Isotopic data for the population span more than one trophic level, and we offer a qualitative evaluation of diet using shark-specific collagen discrimination factors estimated from a 3+ year captive feeding experiment (&Delta;<sup>13</sup>C<sub>shark-diet</sub> and &Delta;<sup>15</sup>N<sub>shark-diet</sub> equal 4.2&permil; and 2.5&permil;, respectively). We assess the degree of individuality with a proportional similarity index that distinguishes specialists and generalists. The isotopic variance is partitioned among differences between-individual (48%), within-individuals (40%), and by calendar year of sub-adulthood (12%). Our data reveal substantial ontogenetic and individual dietary variation within a white shark population.</p>","language":"English","publisher":"Public Library of Science","doi":"10.1371/journal.pone.0045068","usgsCitation":"Kim, S., Tinker, M.T., Estes, J.A., and Koch, P., 2012, Ontogenetic and among-individual variation in foraging strategies of northeast Pacific white sharks based on stable isotope analysis: PLoS ONE, v. 7, no. 9, p. 1-11, https://doi.org/10.1371/journal.pone.0045068.","productDescription":"11 p.","startPage":"1","endPage":"11","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-029024","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":474369,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0045068","text":"Publisher Index Page"},{"id":381881,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"7","issue":"9","noUsgsAuthors":false,"publicationDate":"2012-09-28","publicationStatus":"PW","scienceBaseUri":"546c7623e4b0f4a3478a6176","contributors":{"authors":[{"text":"Kim, S.L.","contributorId":127452,"corporation":false,"usgs":false,"family":"Kim","given":"S.L.","email":"","affiliations":[{"id":6949,"text":"University of California, Santa Cruz","active":true,"usgs":false}],"preferred":false,"id":525199,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Tinker, M. Tim 0000-0002-3314-839X ttinker@usgs.gov","orcid":"https://orcid.org/0000-0002-3314-839X","contributorId":2796,"corporation":false,"usgs":true,"family":"Tinker","given":"M.","email":"ttinker@usgs.gov","middleInitial":"Tim","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":525197,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Estes, J. A.","contributorId":53319,"corporation":false,"usgs":true,"family":"Estes","given":"J.","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":525198,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Koch, P.L.","contributorId":101878,"corporation":false,"usgs":true,"family":"Koch","given":"P.L.","email":"","affiliations":[],"preferred":false,"id":525200,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70040984,"text":"70040984 - 2012 - Bias from false-positive detections and strategies for their removal in studies using telemetry","interactions":[{"subject":{"id":70040984,"text":"70040984 - 2012 - Bias from false-positive detections and strategies for their removal in studies using telemetry","indexId":"70040984","publicationYear":"2012","noYear":false,"chapter":"9.5","title":"Bias from false-positive detections and strategies for their removal in studies using telemetry"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-21T15:56:25.925847","indexId":"70040984","displayToPublicDate":"2012-09-01T09:45:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"9.5","title":"Bias from false-positive detections and strategies for their removal in studies using telemetry","docAbstract":"<p>The use of radio and acoustic telemetry to study aquatic animals has flourished since the 1950s and 1960s (see Section 1). Electronic data-logging receivers are commonly used in both types of active telemetry to record the presence of transmitters in the detection field formed by one or more antennas or hydrophones. As described in Sections 5.1 and 7.1, the path of a transmitter signal to a telemetry receiver can be influenced by many factors and the received signal is not always detected or correctly assigned. It should be of no surprise to users of active telemetry systems that not all records in telemetry receivers are from tagged fish and not all tagged fish are recorded when present.</p><p>Four types of observations are possible in data from telemetry receiving systems based on the binary nature of presence and absence (Table 1). True positives and true negatives are what one ideally expects from telemetry systems, but in most studies they are accompanied by false negatives (not recorded when present) and false positives (recorded when absent). False negatives arise due to a variety of causes, including insufficient detection area relative to transmitter pulse rate and fish travel speed, collisions between transmitters in the detection area, interference from ambient noise, or a received signal too weak to be recorded (see Sections 3, 5, and 7). The probability of false negatives can be calculated as (1–detection probability) and can be estimated with proper study design and incorporated into estimates of fish presence (see Sections 7.2 and 9.2).</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch22","usgsCitation":"Beeman, J.W., and Perry, R.W., 2012, Bias from false-positive detections and strategies for their removal in studies using telemetry, chap. 9.5 <i>of</i> Telemetry techniques: A user guide for fisheries research, https://doi.org/10.47886/9781934874264.ch22.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-037562","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319605,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fcf9d4e4b0a6037df2b9b6","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625592,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625593,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625594,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625590,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Perry, Russell W. 0000-0003-4110-8619 rperry@usgs.gov","orcid":"https://orcid.org/0000-0003-4110-8619","contributorId":2820,"corporation":false,"usgs":true,"family":"Perry","given":"Russell","email":"rperry@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625591,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70264980,"text":"70264980 - 2012 - Induced polarization for subseafloor, deep ocean mapping - Marine induced polarization used for 3D mapping of subseafloor minerals and 4D oil-in-seawater characterization","interactions":[],"lastModifiedDate":"2025-03-27T14:28:06.501545","indexId":"70264980","displayToPublicDate":"2012-09-01T09:27:17","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3363,"text":"Sea Technology","active":true,"publicationSubtype":{"id":10}},"title":"Induced polarization for subseafloor, deep ocean mapping - Marine induced polarization used for 3D mapping of subseafloor minerals and 4D oil-in-seawater characterization","docAbstract":"<p>No abstract available.</p>","language":"English","publisher":"Compass Publications","usgsCitation":"Wynn, J., Williamson, M., and Fleming, J., 2012, Induced polarization for subseafloor, deep ocean mapping - Marine induced polarization used for 3D mapping of subseafloor minerals and 4D oil-in-seawater characterization: Sea Technology, v. 53, no. September, p. 47-50.","productDescription":"4 p.","startPage":"47","endPage":"50","ipdsId":"IP-039068","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":483940,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"53","issue":"September","noUsgsAuthors":false,"publicationDate":"2012-09-01","publicationStatus":"PW","contributors":{"authors":[{"text":"Wynn, Jeff 0000-0002-8102-3882","orcid":"https://orcid.org/0000-0002-8102-3882","contributorId":215675,"corporation":false,"usgs":true,"family":"Wynn","given":"Jeff","affiliations":[],"preferred":true,"id":932158,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Williamson, Mike","contributorId":146794,"corporation":false,"usgs":false,"family":"Williamson","given":"Mike","email":"","affiliations":[],"preferred":false,"id":932159,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fleming, John","contributorId":352831,"corporation":false,"usgs":false,"family":"Fleming","given":"John","affiliations":[],"preferred":false,"id":932160,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040981,"text":"70040981 - 2012 - Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study","interactions":[{"subject":{"id":70040981,"text":"70040981 - 2012 - Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study","indexId":"70040981","publicationYear":"2012","noYear":false,"chapter":"9.3","title":"Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-20T17:56:33.587977","indexId":"70040981","displayToPublicDate":"2012-09-01T09:15:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"chapter":"9.3","title":"Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study","docAbstract":"<p>Telemetry has been used to answer various questions associated with research, management, and monitoring programs and to monitor animal behavior and population dynamics throughout the world. Many telemetry projects have been developed to study the passage, behavior, and survival of migrating adult and juvenile salmonids at hydroelectric projects on the mainstem Columbia and Snake rivers (Skalski et al. 2001a, 2001b; Skalski et al. 2002; Keefer et al. 2004; Goniea et al. 2006; Plumb et al. 2006). Telemetry based field evaluations of the survival of salmon through hydroelectric projects are costly because of the technology (tags, telemetry systems, infrastructure, etc.) and personnel required to conduct the evaluations. Given the cost of implementing these projects, and the financial and conservation implications of the decisions made from the research results (e.g., forgone electricity production and conservation of threatened and endangered animals), ensuring quality data are collected by documenting all procedures, training, data checks, and that sound protocols and quality assurance and control procedures are in place is paramount.</p><p>Telemetry studies can pose unique data collection, processing, and analysis challenges. For instance, inferences about entire populations of animals are made from study animals that are captured, held, and tagged at disparate locations. Consequently great care must be taken to ensure that any potential biases that could arise from field procedures must be minimized (Peven et al. 2005). Interrogations of released study animals are remotely conducted by telemetry systems throughout the study area. The continuous recording of telemetry systems can result in large numbers of detections over a short time frame and the potential for false positive detections from records that are weak or erroneous. Thus, there is the potential to generate large data sets (many thousands of lines) that require significant postprocessing. Data reduction can be done using software or programming code within a software package or manually to discern noise from valid data and pull out the pertinent information for analysis. In either case, consistent well-documented procedures need to be in place to ensure quality results and allow for repeatability of study methods.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch20","usgsCitation":"Hardiman, J.M., Walker, C.E., and Counihan, T.D., 2012, Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study, chap. 9.3 <i>of</i> Telemetry techniques: A user guide for fisheries research, https://doi.org/10.47886/9781934874264.ch20.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-031751","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319645,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fcfad1e4b0a6037df2bbcb","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625665,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625666,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625667,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Hardiman, Jill M. 0000-0002-3661-9695 jhardiman@usgs.gov","orcid":"https://orcid.org/0000-0002-3661-9695","contributorId":2672,"corporation":false,"usgs":true,"family":"Hardiman","given":"Jill","email":"jhardiman@usgs.gov","middleInitial":"M.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625662,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Walker, Christopher E.","contributorId":65938,"corporation":false,"usgs":true,"family":"Walker","given":"Christopher","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":625663,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Counihan, Timothy D. 0000-0003-4967-6514 tcounihan@usgs.gov","orcid":"https://orcid.org/0000-0003-4967-6514","contributorId":4211,"corporation":false,"usgs":true,"family":"Counihan","given":"Timothy","email":"tcounihan@usgs.gov","middleInitial":"D.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625664,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040983,"text":"70040983 - 2012 - Using mark-recapture models to estimate survival from telemetry data: Chapter 9.2","interactions":[{"subject":{"id":70040983,"text":"70040983 - 2012 - Using mark-recapture models to estimate survival from telemetry data: Chapter 9.2","indexId":"70040983","publicationYear":"2012","noYear":false,"title":"Using mark-recapture models to estimate survival from telemetry data: Chapter 9.2"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-21T15:24:29.732869","indexId":"70040983","displayToPublicDate":"2012-09-01T09:15:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Using mark-recapture models to estimate survival from telemetry data: Chapter 9.2","docAbstract":"<p>Analyzing telemetry data within a mark–recapture framework is a powerful approach for estimating demographic parameters (e.g., survival and movement probabilities) that might otherwise be difficult to measure. Yet many studies using telemetry techniques focus on fish behavior and fail to recognize the potential of telemetry data to provide information about fish survival. The sophistication of both mark–recapture modeling and telemetry has dramatically improved since the 1980s, largely due to technological advancements in computing power (for mark–recapture models) and electronic components (for telemetry). Such advances now allow mark–recapture models to take advantage of the detailed information that telemetry techniques can provide.</p><p>The key feature of mark–recapture models is simultaneous estimation of detection and survival probabilities. With telemetry, a “capture” event consists of detecting a given tag code one or more times at a specific location or time. By contrast, in some studies interest may focus on the probability of detecting a single tag transmission (see Sections 7.2 and 9.1). Compared to conventional mark and recapture methods, telemetry methods often have greater detection probabilities due to large detection ranges, increased “effort” (i.e., continuous monitoring with autonomous receivers), and ability to simultaneously monitor multiple locations. Nonetheless, perfect detectability is rare in telemetry studies because both random (e.g., from electronic noise) and nonrandom processes (e.g., receiver loses power temporarily) can allow a fish to pass a receiver undetected. Failure to account for imperfect detection can lead to serious bias in survival estimates. When using telemetry to estimate survival, it is therefore critical to explicitly estimate detection probabilities to ensure unbiased estimates of survival (see Section 7.2). Fortunately, using telemetry techniques and mark–recapture models together yields the best of both worlds: Well-designed telemetry systems deliver high detection probabilities that result in precise estimates from small sample sizes. Mark–recapture models ensure estimates of the demographic parameters are unbiased with respect to the detection process.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch19","usgsCitation":"Perry, R.W., Castro-Santos, T.R., Holbrook, C., and Sandford, B., 2012, Using mark-recapture models to estimate survival from telemetry data: Chapter 9.2, chap. <i>of</i> Telemetry techniques: A user guide for fisheries research, p. 453-475, https://doi.org/10.47886/9781934874264.ch19.","productDescription":"23 p.","startPage":"453","endPage":"475","numberOfPages":"518","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-037563","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true},{"id":365,"text":"Leetown Science Center","active":true,"usgs":true},{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319642,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fd062fe4b0a6037df2d077","contributors":{"editors":[{"text":"Adams, Noah","contributorId":91604,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","affiliations":[],"preferred":false,"id":625682,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625683,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625684,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Perry, Russell W. 0000-0003-4110-8619 rperry@usgs.gov","orcid":"https://orcid.org/0000-0003-4110-8619","contributorId":2820,"corporation":false,"usgs":true,"family":"Perry","given":"Russell","email":"rperry@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625658,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Castro-Santos, Theodore R. 0000-0003-2575-9120 tcastrosantos@usgs.gov","orcid":"https://orcid.org/0000-0003-2575-9120","contributorId":3321,"corporation":false,"usgs":true,"family":"Castro-Santos","given":"Theodore","email":"tcastrosantos@usgs.gov","middleInitial":"R.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":625659,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Holbrook, Christopher M. 0000-0001-8203-6856 cholbrook@usgs.gov","orcid":"https://orcid.org/0000-0001-8203-6856","contributorId":4198,"corporation":false,"usgs":true,"family":"Holbrook","given":"Christopher M.","email":"cholbrook@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":false,"id":625660,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sandford, Benjamin P.","contributorId":118178,"corporation":false,"usgs":true,"family":"Sandford","given":"Benjamin P.","affiliations":[],"preferred":false,"id":515037,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70044110,"text":"70044110 - 2012 - Time-to-event analysis as a framework for quantifying fish passage performance","interactions":[],"lastModifiedDate":"2022-12-27T16:31:22.906306","indexId":"70044110","displayToPublicDate":"2012-09-01T09:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"chapter":"9.1","title":"Time-to-event analysis as a framework for quantifying fish passage performance","docAbstract":"<p>Fish passage is the result of a sequence of processes, whereby fish must approach, enter, and pass a structure. Each of these processes takes time, and fishway performance is best quantified in terms of the rates at which each process is completed. Optimal performance is achieved by maximizing the rates of approach, entry, and passage through safe and desirable routes. Sometimes, however, it is necessary to reduce rates of passage through less desirable routes in order to increase proportions passing through the preferred route. Effectiveness of operational or structural modifications for achieving either of these goals is best quantified by applying time-to-event analysis, commonly known as survival analysis methods, to telemetry data. This set of techniques allows for accurate estimation of passage rates and covariate effects on those rates. Importantly, it allows researchers to quantify rates that vary over time, as well as the effects of covariates that also vary over time. Finally, these methods are able to control for competing risks, i.e., the presence of alternate passage routes, failure to pass, or other fates that remove fish from the pool of candidates available to pass through a particular route. In this chapter, we present a model simulation of telemetered fish passing a hydroelectric dam, and provide step-by-step guidance and rationales for performing time-to-event analysis on the resulting data. We demonstrate how this approach removes bias from performance estimates that can result from using methods that focus only on proportions passing each route. Time-to-event analysis, coupled with multinomial models for measuring survival, provides a comprehensive set of techniques for quantifying fish passage, and a framework from which performance among different sites can be better understood.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","usgsCitation":"Castro-Santos, T.R., and Perry, R.W., 2012, Time-to-event analysis as a framework for quantifying fish passage performance, chap. 9.1 <i>of</i> Telemetry techniques: A user guide for fisheries research, p. 427-452.","productDescription":"26 p.","startPage":"427","endPage":"452","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-032289","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319637,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":319636,"rank":2,"type":{"id":15,"text":"Index Page"},"url":"https://fisheries.org/bookstore/all-titles/professional-and-trade/55068c/"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fd0587e4b0a6037df2cf7e","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625655,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625656,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625657,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Castro-Santos, Theodore R. 0000-0003-2575-9120 tcastrosantos@usgs.gov","orcid":"https://orcid.org/0000-0003-2575-9120","contributorId":3321,"corporation":false,"usgs":true,"family":"Castro-Santos","given":"Theodore","email":"tcastrosantos@usgs.gov","middleInitial":"R.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":625653,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Perry, Russell W. 0000-0003-4110-8619 rperry@usgs.gov","orcid":"https://orcid.org/0000-0003-4110-8619","contributorId":2820,"corporation":false,"usgs":true,"family":"Perry","given":"Russell","email":"rperry@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625654,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70128642,"text":"70128642 - 2012 - Range expansion of nonindigenous caribou in the Aleutianarchipelago of Alaska","interactions":[],"lastModifiedDate":"2014-10-14T08:48:57","indexId":"70128642","displayToPublicDate":"2012-09-01T08:46:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1018,"text":"Biological Invasions","active":true,"publicationSubtype":{"id":10}},"title":"Range expansion of nonindigenous caribou in the Aleutianarchipelago of Alaska","docAbstract":"Caribou (<i>Rangifer tarandus</i>) are nonindigenous to all but the eastern-most island of the Aleutian archipelago of Alaska. In 1958–1959, caribou were intentionally introduced to Adak Island in the central archipelago, and the population has at least tripled in recent years subsequent to the closure of a naval air facility. Although dispersal of caribou to adjacent islands has been suspected, no historical documentation has occurred to date. Herein, we report consistent detections of caribou sign on the adjacent island of Kagalaska over 2 summer field seasons (2010–2011), and visual detection of caribou on that island during the summer of 2011. Ecological impacts of caribou on Kagalaska are not strongly apparent at the present time and we do not know how many animals permanently occupy the island. However, establishment of a reproductively viable resident population on Kagalaska is worrisome and could set the stage for a step-wise invasion of additional nearby islands.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Biological Invasions","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Kluwer Academic Publishers","publisherLocation":"Dordrecht","doi":"10.1007/s10530-012-0195-z","usgsCitation":"Ricca, M., Weckerly, F.W., Duarte, A., and Williams, J.C., 2012, Range expansion of nonindigenous caribou in the Aleutianarchipelago of Alaska: Biological Invasions, v. 14, no. 9, p. 1779-1784, https://doi.org/10.1007/s10530-012-0195-z.","productDescription":"6 p.","startPage":"1779","endPage":"1784","numberOfPages":"6","ipdsId":"IP-035492","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":295244,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":295240,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s10530-012-0195-z"}],"country":"United States","state":"Alaska","otherGeospatial":"Aleutian Islands","volume":"14","issue":"9","noUsgsAuthors":false,"publicationDate":"2012-02-28","publicationStatus":"PW","scienceBaseUri":"543e3b2de4b0fd76af69cf26","contributors":{"authors":[{"text":"Ricca, Mark A.","contributorId":26644,"corporation":false,"usgs":true,"family":"Ricca","given":"Mark A.","affiliations":[],"preferred":false,"id":503086,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Weckerly, Floyd W.","contributorId":15545,"corporation":false,"usgs":true,"family":"Weckerly","given":"Floyd","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":503085,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Duarte, Adam","contributorId":79822,"corporation":false,"usgs":true,"family":"Duarte","given":"Adam","email":"","affiliations":[],"preferred":false,"id":503088,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Williams, Jeffrey C.","contributorId":70321,"corporation":false,"usgs":true,"family":"Williams","given":"Jeffrey","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":503087,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70043665,"text":"70043665 - 2012 - User’s guide and metada for the PICES Nonindigenous Species Information System","interactions":[],"lastModifiedDate":"2016-05-03T15:04:17","indexId":"70043665","displayToPublicDate":"2012-09-01T07:45:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":4,"text":"Other Government Series"},"title":"User’s guide and metada for the PICES Nonindigenous Species Information System","docAbstract":"<h1>Introduction&nbsp;</h1>\n<p>Welcome to the PICES Nonindigenous Species Information System, a Microsoft Access database that displays the biogeographic distributions, invasion status, vectors, and key life history attributes of the approximately 740 reported nonindigenous species (NIS) in the estuarine and near-coastal habitats of the North Pacific and Hawaii. This database was developed by the U.S. Environmental Protection Agency and the U.S. Geological Survey under the auspices of Working Group 21 (Invasive Species) of the North Pacific Marine Science Organization (PCIES). The PICES database contains the data used to generate the &ldquo;Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific&rdquo; (Lee and Reusser, 2012; herein referred to as the &ldquo;Atlas&rdquo;). The User&rsquo;s Guide provides instructions on how to use the PICES database as well as metadata for the database and the Atlas. We note that for most users, the Atlas provides a simpler approach to accessing key information on NIS in the PICES countries than the database, though the database does provide additional information on species and sources as well as allowing users to extract information on specific taxa and/or locations (see Section 4).</p>\n<p>The PICES database also includes species reported from the PICES Rapid Assessment Surveys (RAS). PICES sponsored four rapid assessment surveys with the objective of quickly characterizing the native, non-native, and cryptogenic species present in different locations. Surveys were sponsored in Dalian, China in 2008, Jeju, Korea in 2009, Newport, Oregon, USA in 2010, and Peter the Great Bay, near Vladivostok and Nakhodka, Russia in 2011 (<a href=\"http://www.pices.int/publications/pices_press/volume19/v19_n1/pp_30-31_Kobe-WS_f.pdf\">http://www.pices.int/publications/pices_press/volume19/v19_n1/pp_30-31_Kobe-WS_f.pdf</a>, <a href=\"http://www.pices.int/publications/pices_press/volume20/v20_n1/pp_26-29_RAS-2011.pdf\">http://www.pices.int/publications/pices_press/volume20/v20_n1/pp_26-29_RAS-2011.pdf</a>). The PICES database contains the RAS species that were made available in time for inclusion. Thus, the database does not capture all the species found in these surveys. In addition, much of the information on the RAS species was provided by the experts conducting the survey, and their distributions, environmental requirements, and life history attributes were not evaluated to the same level of detail by the PICES authors as the North Pacific NIS. In lieu of the more extensive review as conduced with the Atlas species, the information on the RAS species needs to be considered preliminary. Additionally, it is important to use the &ldquo;Map All Distributions&rdquo; option (see Section 3.6.6) when mapping their distribution or conducting a query. The general reference for the RAS surveys in the PICES database is &ldquo;PICES Working Group 21, YEAR SURVEY&rdquo;.</p>\n<p>The overall goal of both the database and Atlas was to simplify and standardize the dissemination of distributional, habitat, and life history characteristics of near-coastal and estuarine nonindigenous species. This database provides a means of querying these data and displaying the information in a consistent format. The specific classes of information the database captures include:</p>\n<ul>\n<li><span>Regional and global ranges of native and nonindigenous near-coastal and estuarine species at different hierarchical spatial scales. </span></li>\n<li><span>Habitat and physiological requirements of near-coastal and estuarine species. </span></li>\n<li><span>Life history characteristics of near-coastal and estuarine species. </span></li>\n<li><span>Invasion history and vectors for nonindigenous species.</span></li>\n</ul>\n<p>This standardized and synthesized data in the database and the Atlas provide the basic information needed to address a number of managerial and scientific needs. Thus, users will be able to:</p>\n<ul>\n<li><span>Create a baseline on the extent of invasion by region in order to assess new invasions. </span></li>\n<li><span>Use existing geographical patterns of invasion to gain some insights into potential new invaders. </span></li>\n<li><span>Use existing geographical patters of invasion to gain some insights into mechanisms affecting relative invasibility of different areas. </span></li>\n<li><span>Use life history attributes and environmental requirements of the reported nonindigenous species to evaluate traits of invaders. </span></li>\n<li><span>Understand the potential spread of invaders based on their habitat and environmental requirements. </span></li>\n<li><span>Understand importance of different vectors of introduction of nonindigenous species by region.</span></li>\n</ul>\n<p>The data in the Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific (Lee and Reusser, 2012) are up-to-date as of June 2012. Updates to the PICES database were made in September 2012.&nbsp;</p>","language":"English","publisher":"U.S. Environmental Protection Agengy","usgsCitation":"Lee, Reusser, D.A., Marko, K., and Ranelletti, M., 2012, User’s guide and metada for the PICES Nonindigenous Species Information System, vii, 112 p.","productDescription":"vii, 112 p.","numberOfPages":"121","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-040946","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":320913,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":320912,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://nepis.epa.gov/Exe/ZyNET.exe/P100FZ0R.txt?ZyActionD=ZyDocument&Client=EPA&Index=1995%20Thru%201999%7C1976%20Thru%201980%7C2006%20Thru%202010%7C1991%20Thru%201994%7CHardcopy%20Publications%7C2000%20Thru%202005%7C1986%20Thru%201990%7C2011%20Thru%202015%7C1981%20Thru%201985%7CPrior%20to%201976&Docs=&Query=User%27s%20Guide%20Metadata%20PICES%20Nonindigenous%20Species%20Information%20System%20&Time=&EndTime=&SearchMethod=2&TocRestrict=n&Toc=&TocEntry=&QField=&QFieldYear=&QFieldMonth=&QFieldDay=&UseQField=&IntQFieldOp=0&ExtQFieldOp=0&XmlQuery=&File=D%3A%5CZYFILES%5CINDEX%20DATA%5C11THRU15%5CTXT%5C00000006%5CP100FZ0R.txt&User=ANONYMOUS&Password=anonymous&SortMethod=-%7Ch&MaximumDocuments=15&FuzzyDegree=0&ImageQuality=r85g16/r85g16/x150y150g16/i500&Display=hpfr&DefSeekPage=x&SearchBack=ZyActionL&Back=ZyActionS&BackDesc=Results%20page&MaximumPages=1&ZyEntry=1&SeekPage=x"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5729cbbce4b0b13d3919a3df","contributors":{"authors":[{"text":"Lee, Henry II","contributorId":119739,"corporation":false,"usgs":true,"family":"Lee","suffix":"Henry II","affiliations":[],"preferred":false,"id":516728,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Reusser, Deborah A. dreusser@usgs.gov","contributorId":2423,"corporation":false,"usgs":true,"family":"Reusser","given":"Deborah","email":"dreusser@usgs.gov","middleInitial":"A.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":628586,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Marko, Katharine Katharine","contributorId":121216,"corporation":false,"usgs":true,"family":"Marko","given":"Katharine","suffix":"Katharine","email":"","affiliations":[],"preferred":false,"id":516729,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ranelletti, Marla Marla","contributorId":117077,"corporation":false,"usgs":true,"family":"Ranelletti","given":"Marla","suffix":"Marla","email":"","affiliations":[],"preferred":false,"id":516727,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70157117,"text":"70157117 - 2012 - Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA: Chapter 8.1","interactions":[],"lastModifiedDate":"2022-11-07T17:18:47.898501","indexId":"70157117","displayToPublicDate":"2012-09-01T07:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA: Chapter 8.1","docAbstract":"<p>Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis. Chapters are written by biologists, technicians, and engineers from the private, academic, and government sectors, with decades of experience using these technologies.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","usgsCitation":"Steigl, T.W., and Holbrook, C., 2012, Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA: Chapter 8.1, chap. <i>of</i> Telemetry techniques: A user guide for fisheries research, p. 361-387.","productDescription":"17 p.","startPage":"361","endPage":"387","onlineOnly":"N","additionalOnlineFiles":"N","costCenters":[{"id":654,"text":"Western Fisheries Research 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H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":571722,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Steigl, Tracy W.","contributorId":147448,"corporation":false,"usgs":false,"family":"Steigl","given":"Tracy","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":571719,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Holbrook, Christopher M. 0000-0001-8203-6856 cholbrook@usgs.gov","orcid":"https://orcid.org/0000-0001-8203-6856","contributorId":4198,"corporation":false,"usgs":true,"family":"Holbrook","given":"Christopher M.","email":"cholbrook@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":false,"id":571718,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70040972,"text":"70040972 - 2012 - Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams","interactions":[{"subject":{"id":70040972,"text":"70040972 - 2012 - Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams","indexId":"70040972","publicationYear":"2012","noYear":false,"chapter":"6.5","title":"Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-20T17:40:21.604896","indexId":"70040972","displayToPublicDate":"2012-09-01T06:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"6.5","title":"Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams","docAbstract":"<p>Studies of the effects of hydroelectric dams on fish populations are common (Williams 2008). Dams block passage of migratory and resident fish, alter habitats from free-flowing to lacustrine, and can alter water temperatures both upstream and downstream. At some dams, structures or operations are modified to reduce their effects on fish populations. In these cases, it is recommended that a series of studies be conducted before and after the alterations to help assess the effectiveness of the actions. We will describe three studies at hydroelectric dams on the Columbia and Snake rivers in the Pacific Northwest of the United States prompted by a need to reduce their effects on fishes, primarily salmonids, listed under the Endangered Species Act (ESA 1973).</p><p>Hydroelectric development on the Columbia and Snake rivers occurred chiefly between the early 1930s and the late 1970s. Fish originating in the upper portions of the Columbia and Snake rivers must pass as many as eight dams on these rivers during their seaward migration and again on their trip back to their natal waters. Small changes in passage survival at each dam can be important, due to the multiplicative effects of the series of dams. For example, if downstream passage survival at each of eight dams and reservoirs was 90% and it was increased by only 3% per dam, the numbers of fish surviving through the entire hydro system would increase from 43% to 56%. Thus, precisely measuring small changes in passage survival are important to the overall program. This has been achieved by designing efficient telemetry systems and releasing large numbers of tagged fish.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch12","usgsCitation":"Beeman, J.W., Hockersmith, E., and Stevenson, J.R., 2012, Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams, chap. 6.5 <i>of</i> Telemetry techniques: A user guide for fisheries research, p. 281-304, https://doi.org/10.47886/9781934874264.ch12.","productDescription":"24 p.","startPage":"281","endPage":"304","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-026883","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319633,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fcfac3e4b0a6037df2bbae","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625638,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625639,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625640,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625637,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hockersmith, Eric","contributorId":56781,"corporation":false,"usgs":true,"family":"Hockersmith","given":"Eric","email":"","affiliations":[],"preferred":false,"id":515018,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stevenson, John R.","contributorId":147936,"corporation":false,"usgs":false,"family":"Stevenson","given":"John","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":515019,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040976,"text":"70040976 - 2012 - Optimization of radio telemetry receiving systems","interactions":[{"subject":{"id":70040976,"text":"70040976 - 2012 - Optimization of radio telemetry receiving systems","indexId":"70040976","publicationYear":"2012","noYear":false,"chapter":"5.2","title":"Optimization of radio telemetry receiving systems"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-20T17:41:46.354559","indexId":"70040976","displayToPublicDate":"2012-09-01T05:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"5.2","title":"Optimization of radio telemetry receiving systems","docAbstract":"<p>The performance of radio telemetry receiving systems can be affected by numerous factors, thus it is important for researchers to understand these factors when designing a radio telemetry study. One approach that has been used to describe these factors is the radio system equation which defines six variables that affect radio receiving systems (Sisak and Lotimer 1998; Section 5.1). This equation is:</p><p>P<sub>r<span>&nbsp;</span></sub>= P<sub>t<span>&nbsp;</span></sub>– L<sub>w<span>&nbsp;</span></sub>– L<sub>awi<span>&nbsp;</span></sub>–L<sub>air<span>&nbsp;</span></sub>+ G<sub>r<span>&nbsp;</span></sub>– L<sub>rtl</sub></p><p>where P<sub>r</sub><span>&nbsp;</span>is the received power level, P<sub>t</sub><span>&nbsp;</span>is the transmitted power level, L<sub>w</sub><span>&nbsp;</span>is the signal loss in water, L<sub>awi</sub><span>&nbsp;</span>is the loss at the air-water interface, L<sub>air</sub><span>&nbsp;</span>is the loss in air, G<sub>r</sub><span>&nbsp;</span>is the gain of the receive antenna, and L<sub>rtl</sub><span>&nbsp;</span>is the loss of the receive transmission line (Figure 1). Three of these variables (L<sub>w</sub>, L<sub>air</sub>, and L<sub>awi</sub>) are affected by factors that researchers have little control over (i.e., distance traveled by a given radio signal, water conductivity and temperature, angle of refraction of the signal as it exits the water). However, P<sub>t</sub>, G<sub>r</sub>, and L<sub>rtl</sub><span>&nbsp;</span>can be influenced by the user and planning for the effects of each is an essential first step towards designing a radio receiving system that operates at the highest level possible. The first of these factors P<sub>t</sub>, is addressed while choosing which transmitter to purchase, a topic which was covered in a previous Section. Much of the information that we present will focus on maximizing the strength of the signal that is received by the radio receiver which is affected by G<sub>r</sub><span>&nbsp;</span>and L<sub>rtl</sub>. Additionally, we will cover techniques to minimize the effects of ambient (or background) noise which is also an important aspect of radio receiving systems. Ambient noise is important because low signal-to-noise ratios will result in signals that cannot be detected by the receiving system. In other words, tagged fish within range of the receiving system are not detected because ambient noise levels exceed the received signal at the receiver.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch6","usgsCitation":"Evans, S.D., and Stevenson, J.R., 2012, Optimization of radio telemetry receiving systems, chap. 5.2 <i>of</i> Telemetry techniques: A user guide for fisheries research, https://doi.org/10.47886/9781934874264.ch6.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-030331","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319607,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fd0154e4b0a6037df2c8a8","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625596,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625597,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625598,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Evans, Scott D. 0000-0003-0452-7726 sdevans@usgs.gov","orcid":"https://orcid.org/0000-0003-0452-7726","contributorId":4408,"corporation":false,"usgs":true,"family":"Evans","given":"Scott","email":"sdevans@usgs.gov","middleInitial":"D.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625595,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Stevenson, John R.","contributorId":147936,"corporation":false,"usgs":false,"family":"Stevenson","given":"John","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":515026,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70040978,"text":"70040978 - 2012 - Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance: Chapter 4","interactions":[{"subject":{"id":70040978,"text":"70040978 - 2012 - Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance: Chapter 4","indexId":"70040978","publicationYear":"2012","noYear":false,"title":"Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance: Chapter 4"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-20T17:43:44.037874","indexId":"70040978","displayToPublicDate":"2012-09-01T04:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance: Chapter 4","docAbstract":"<p>One assumption of nearly every biotelemetry study is that the tagged animals are representative of the untagged population. That is, that the processes by which study animals are captured, handled, and tagged, as well as the act of carrying a transmitter, will have minimal effect on their behavior and performance. This assumption, commonly stated as a lack of transmitter effects, must be valid if telemetry studies are to describe accurately the movements and behavior of an entire population of interest, rather than only of a subset of that population.</p><p>Considering the sequence of events necessary to implement telemetry studies (i.e., collection, handling, transmitter attachment), as well as the intrusive nature of many transmitter attachment techniques, it is likely that there will be some effect on the study animals. These potential impacts can range from mild to severe, from transitory to permanent, and may be manifest immediately or not for several days to weeks after tagging.</p><p>Direct physical impacts can include elevated stress levels, injury, or even death (Knights and Lasee 1996; Jepsen et al. 2001; Lacroix et al. 2004). Interrupted integrity of the scales, mucus, or skin can place fish at increased risk of infection (Mellas and Haynes 1985; Swanberg et al. 1999; Bauer et al. 2005; Harms 2005). Effects on fish behavior include altered buoyancy compensation ability (Gallepp and Magnuson 1972; Fried et al. 1976), reduced swimming performance (McCleave and Stred 1975; Counihan and Frost 1999; Makiguchi and Ueda 2009), reduced feeding, or changes in dominance status (Greenstreet and Morgan 1989; Armstrong and Rawlings 1993; Welch et al. 2007). Changes in behavior such as these can affect a fish’s growth, rate of maturation or migration, or increase its vulnerability to predation. At some level, these transmitter effects will be present in nearly every study using telemetry and if substantial, they can violate the critical assumption that tagged fish are representative of the untagged population.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch4","usgsCitation":"Liedtke, T.L., and Wargo Rub, A.M., 2012, Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance: Chapter 4, chap. <i>of</i> Telemetry techniques: A user guide for fisheries research, https://doi.org/10.47886/9781934874264.ch4.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-033717","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319609,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fd0406e4b0a6037df2cd88","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625603,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625604,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625605,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Liedtke, Theresa L. 0000-0001-6063-9867 tliedtke@usgs.gov","orcid":"https://orcid.org/0000-0001-6063-9867","contributorId":2999,"corporation":false,"usgs":true,"family":"Liedtke","given":"Theresa","email":"tliedtke@usgs.gov","middleInitial":"L.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625602,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wargo Rub, A. Michelle","contributorId":148962,"corporation":false,"usgs":false,"family":"Wargo Rub","given":"A.","email":"","middleInitial":"Michelle","affiliations":[{"id":17605,"text":"NOAA, Seattle, WA","active":true,"usgs":false}],"preferred":false,"id":515028,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70043666,"text":"70043666 - 2012 - Atlas of nonindigenous marine and estuarine species in the North Pacific","interactions":[],"lastModifiedDate":"2016-05-03T14:51:29","indexId":"70043666","displayToPublicDate":"2012-09-01T03:45:00","publicationYear":"2012","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":4,"text":"Other Government Series"},"title":"Atlas of nonindigenous marine and estuarine species in the North Pacific","docAbstract":"<h1>Executive Summary</h1>\n<p>Marine and estuarine nonindigenous species (NIS) are found across the world&rsquo;s oceans, and designing effective management strategies to mitigate this economic, ecological and human health threat requires a basic understanding of the existing invasion patterns at regional to global scales. However, to date, syntheses at ocean basin scales have essentially been nonexistent. To fill the gap for the North Pacific, we synthesized the distributions, invasion history, environmental tolerances, and natural history of the near-coastal nonindigenous species (NIS) reported from the member countries of the North Pacific Marine Science Organization (PICES; United States, Canada, China, Republic of Korea, Japan, and Russia). The hierarchical &ldquo;Marine Ecoregions of the World&rdquo; (MEOW) biogeographic schema was used as the framework for assessing species&rsquo; distributions, with the modification that we added a &ldquo;region&rdquo; level to differentiate eastern and western sides of oceans. The two North Pacific regions are the Northeast Pacific (NEP), which extends from the Gulf of California to the Aleutian Islands, and the Northwest Pacific (NWP), which extends from the East China Sea to the Kamchatka Shelf. To have complete coverage of the United States, we included the MEOW Hawaii Ecoregion as a separate reporting unit. To have complete coverage of Japan and China, we combined five MEOW ecoregions in southern China and Japan into the North Central-Indo Pacific (NCIP) Region. The various types of information were synthesized in a Microsoft Access database, the &ldquo;PICES Nonindigenous Species Information System&rdquo;, which is further described in the &ldquo;User&rsquo;s Guide and Metadata for the PICES Nonindigenous Species Information System&rdquo; (Lee et al., 2012). The PICES database was then used to generate two-page &ldquo;species profiles&rdquo; that map the native and introduced distributions of each species and provide a standardized summary of its invasion history, environmental tolerances, and natural history. These species profiles form the bulk of the &ldquo;Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific&rdquo;.</p>\n<p>A total of 747 near-coastal nonindigenous species were identified in the PICES countries, with four phyla (Arthropoda, Chordata, Mollusca, and Annelida) constituting more than 70% of these invaders. The NEP and Hawaii have similar numbers of reported nonindigenous species, 368 and 347, respectively. In comparison, the NWP has about 60% of the number of reported NIS, 208. The NCIP contains only 73 NIS, though there is limited information for these ecoregions. When evaluated at an individual MEOW ecoregion scale, the Hawaii Ecoregion was the most invaded with 347 invaders, followed by the Northern California Ecoregion, which includes the San Francisco Estuary, with 287 NIS. The most invaded ecoregion in the NWP was the Central Kuroshio Current Ecoregion, which includes Tokyo Bay, with 87 reported NIS. Eight potential reasons for this geographical discrepancy in the extent of invasion were considered. The two most important appear to be: 1) the milder temperature regimes in the NEP and Hawaii are more conducive for NWP species to invade the NEP and Hawaii than the reverse and 2) there has been a greater search effort for NIS in Hawaii and the NEP at least for certain taxonomic groups.</p>\n<p>In terms of how the NIS were transported, hull fouling was potentially the most important vector in the NEP, NWP, and Hawaii, with ballast water discharges the second most important in all three regions. Intentional stocking and aquaculture escapees were relatively more important in the NWP than the NEP or Hawaii, reflecting the extensive aquaculture in Asia. Aquaculture associated species (i.e., aquaculture hitchhikers) was relatively important in the NEP, reflecting the historical influx of invaders with the importation of Atlantic and Pacific oysters.&nbsp;</p>","language":"English","publisher":"U.S. Environmental Protection Agency","usgsCitation":"Lee, and Reusser, D.A., 2012, Atlas of nonindigenous marine and estuarine species in the North Pacific, xxv,1915.","productDescription":"xxv,1915","numberOfPages":"1943","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-040943","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":320909,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":320903,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://nepis.epa.gov/Exe/ZyNET.exe/P100FXIS.txt?ZyActionD=ZyDocument&Client=EPA&Index=2011%20Thru%202015&Docs=&Query=Atlas%20nonindigenous%20marine%20estuarine%20species%20North%20Pacific%20&Time=&EndTime=&SearchMethod=2&TocRestrict=n&Toc=&TocEntry=&QField=&QFieldYear=&QFieldMonth=&QFieldDay=&UseQField=&IntQFieldOp=0&ExtQFieldOp=0&XmlQuery=&File=D%3A%5CZYFILES%5CINDEX%20DATA%5C11THRU15%5CTXT%5C00000006%5CP100FXIS.txt&User=ANONYMOUS&Password=anonymous&SortMethod=-%7Ch&MaximumDocuments=15&FuzzyDegree=0&ImageQuality=r85g16/r85g16/x150y150g16/i500&Display=hpfr&DefSeekPage=x&SearchBack=ZyActionL&Back=ZyActionS&BackDesc=Results%20page&MaximumPages=1&ZyEntry=1&SeekPage=x"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5729cbade4b0b13d3919a2e3","contributors":{"authors":[{"text":"Lee, Henry II","contributorId":115628,"corporation":false,"usgs":true,"family":"Lee","suffix":"Henry II","affiliations":[],"preferred":false,"id":516730,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Reusser, Deborah A. dreusser@usgs.gov","contributorId":2423,"corporation":false,"usgs":true,"family":"Reusser","given":"Deborah","email":"dreusser@usgs.gov","middleInitial":"A.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":628559,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040973,"text":"70040973 - 2012 - A history of telemetry in fishery research","interactions":[{"subject":{"id":70040973,"text":"70040973 - 2012 - A history of telemetry in fishery research","indexId":"70040973","publicationYear":"2012","noYear":false,"chapter":"2","title":"A history of telemetry in fishery research"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-20T17:41:08.073877","indexId":"70040973","displayToPublicDate":"2012-09-01T02:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"2","title":"A history of telemetry in fishery research","docAbstract":"<p>Biotelemetry has been defined as “the instrumental technique for gaining and transmitting information from a living organism and its environment to a remote observer” (Slater 1965). Biotelemetry typically utilizes wireless transmission of either an audible signal or electronic data to determine location of a tagged animal. Fisheries researchers use location information to gain a variety of insights into migration, habitat use, behavior, productivity, or survival of fish. Biotelemetry can be divided into two basic categories, acoustic or radio, based on mode of transmission, mechanical or electromagnetic energy, and operating frequency. Most acoustic systems in use today transmit at low frequency, between 30 and 300 kHz, while most radio systems transmit at very high frequency, between 30 and 300 MHz (Sisak and Lotimer 1998).</p><p>Acoustic telemetry is based on the principals of sonar (sound navigation and ranging), which was developed to detect submarines during World War I. The properties of acoustic systems favor their use in deep waters with high conductivity and low turbulence (Winter 1996). Radio telemetry is based on the principals of wireless radio communication, which were first demonstrated by Nikola Tesla in 1893. Radio systems are best suited in shallow waters with relatively low conductivity but have the added benefit of improved signal detection in turbulent conditions and with aerial antennas. Advances in both technologies have resulted in highly efficient transmitter and receiving systems.</p><p>Advancements in products used for animal telemetry over the past 50 years have generally followed those in the electronics field (Figure 1). Bell Laboratories1 ushered in the age of digital electronics with the invention of the transistor in 1947 (Mann 2000). Today transistors are common in everyday items such as radios, televisions, hearing aids, computers, cell phones and even MP3 players. Consumer demand for inexpensive small electronic devices with increased functionality has continually driven advancements in the field of electronics. These advancements have subsequently led to improvements in biotelemetry transmitters and receivers such as miniaturization of components, increased battery performance, and more powerful micro-processing.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch2","usgsCitation":"Hockersmith, E., and Beeman, J.W., 2012, A history of telemetry in fishery research, chap. 2 <i>of</i> Telemetry techniques: A user guide for fisheries research, p. 7-19, https://doi.org/10.47886/9781934874264.ch2.","productDescription":"13 p.","startPage":"7","endPage":"19","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-026746","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":313833,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"568cf73ae4b0e7a44bc0f123","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625599,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625600,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625601,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Hockersmith, Eric","contributorId":56781,"corporation":false,"usgs":true,"family":"Hockersmith","given":"Eric","email":"","affiliations":[],"preferred":false,"id":515021,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":587636,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70173874,"text":"70173874 - 2012 - Non-lethal sampling of walleye for stable isotope analysis: a comparison of three tissues","interactions":[],"lastModifiedDate":"2016-06-15T14:44:25","indexId":"70173874","displayToPublicDate":"2012-09-01T01:30:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1659,"text":"Fisheries Management and Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Non-lethal sampling of walleye for stable isotope analysis: a comparison of three tissues","docAbstract":"<p><span>Stable isotope analysis of fishes is often performed using muscle or organ tissues that require sacrificing animals. Non-lethal sampling provides an alternative for evaluating isotopic composition for species of concern or individuals of exceptional value. Stable isotope values of white muscle (lethal) were compared with those from fins and scales (non-lethal) in walleye,&nbsp;</span><i>Sander vitreus</i><span>&nbsp;(Mitchill), from multiple systems, size classes and across a range of isotopic values. Isotopic variability was also compared among populations to determine the potential of non-lethal tissues for diet-variability analyses. Muscle-derived isotope values were enriched compared with fins and depleted relative to scales. A split-sample validation technique and linear regression found that isotopic composition of walleye fins and scales was significantly related to that in muscle tissue for both &delta;</span><sup>13</sup><span>C and &delta;</span><sup>15</sup><span>N (</span><i>r</i><sup>2&nbsp;</sup><span>=</span><sup>&nbsp;</sup><span>0.79&ndash;0.93). However, isotopic variability was significantly different between tissue types in two of six populations for &delta;</span><sup>15</sup><span>N and three of six populations for &delta;</span><sup>13</sup><span>C. Although species and population specific, these findings indicate that isotopic measures obtained from non-lethal tissues are indicative of those obtained from muscle.</span></p>","language":"English","publisher":"Blackwell Publishing, Ltd.","publisherLocation":"Hoboken, New Jersey","doi":"10.1111/j.1365-2400.2011.00830.x","usgsCitation":"Chipps, S.R., VanDeHey, J., and Fincel, M., 2012, Non-lethal sampling of walleye for stable isotope analysis: a comparison of three tissues: Fisheries Management and Ecology, v. 19, no. 4, p. 283-292, https://doi.org/10.1111/j.1365-2400.2011.00830.x.","productDescription":"10 p.","startPage":"283","endPage":"292","numberOfPages":"10","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-031253","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":323707,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"19","issue":"4","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2011-10-20","publicationStatus":"PW","scienceBaseUri":"57627c37e4b07657d19a6a08","contributors":{"authors":[{"text":"Chipps, Steven R. 0000-0001-6511-7582 steve_chipps@usgs.gov","orcid":"https://orcid.org/0000-0001-6511-7582","contributorId":2243,"corporation":false,"usgs":true,"family":"Chipps","given":"Steven","email":"steve_chipps@usgs.gov","middleInitial":"R.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":638878,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"VanDeHey, J.A.","contributorId":86193,"corporation":false,"usgs":true,"family":"VanDeHey","given":"J.A.","affiliations":[],"preferred":false,"id":639113,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fincel, M.J.","contributorId":88979,"corporation":false,"usgs":true,"family":"Fincel","given":"M.J.","affiliations":[],"preferred":false,"id":639114,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040979,"text":"70040979 - 2012 - Introduction","interactions":[{"subject":{"id":70040979,"text":"70040979 - 2012 - Introduction","indexId":"70040979","publicationYear":"2012","noYear":false,"chapter":"1","title":"Introduction"},"predicate":"IS_PART_OF","object":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"id":1}],"isPartOf":{"id":70198150,"text":"70198150 - 2012 - Telemetry techniques: A user guide for fisheries research","indexId":"70198150","publicationYear":"2012","noYear":false,"title":"Telemetry techniques: A user guide for fisheries research"},"lastModifiedDate":"2022-12-20T17:46:38.205406","indexId":"70040979","displayToPublicDate":"2012-09-01T01:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"1","title":"Introduction","docAbstract":"<div class=\"entry-body\"><div class=\"entry-content\"><p>elemetry provides a powerful and flexible tool for studying aquatic animals, making it possible to repeatedly locate and identify individuals in remote or inaccessible settings—a task that would be difficult (if not impossible) to accomplish using other methods. The use of telemetry has increased dramatically in recent years, and its application is limited only by the capabilities of the equipment and the researcher’s imagination. In spite of these advantages, telemetry is equipment-intensive and generally requires more specialized knowledge and training than many other field techniques. The electronic equipment associated with its use can often dazzle, intimidate, and confuse those just starting out. Even experienced users are often hard-pressed to keep up with the technological advances. Answers to such basic questions as “what equipment do I need?” or “how do I get started?” are not always evident or straightforward. These are valid concerns, since the equipment and methods used can affect the success of the study and the quality of information collected.</p><p>The purpose of this book is to provide a guide for using telemetry to study aquatic animals—call it a user’s manual or Telemetry 101. Our principal intent is to provide the basic information to plan, implement, and conduct telemetry studies under field conditions. Considerations related to data collection and interpretations are also discussed. As with any scientific procedure, collecting usable information and accurately interpreting study results depends on an understanding of the underlying principles of the methods used. A wide range of telemetry equipment and field techniques are available. Clearly defined research objectives and knowledge of the various options, capabilities, and limitations of the equipment and methods is essential for developing projects that effectively address the research or management questions being asked. Telemetry is a tool, and like any tool it will only function effectively when used properly.</p></div></div>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","doi":"10.47886/9781934874264.ch1","usgsCitation":"2012, Introduction, chap. 1 <i>of</i> Telemetry techniques: A user guide for fisheries research, https://doi.org/10.47886/9781934874264.ch1.","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-036198","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319649,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fcffd0e4b0a6037df2c593","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625670,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625671,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625672,"contributorType":{"id":2,"text":"Editors"},"rank":3}]}}
,{"id":70040982,"text":"70040982 - 2012 - Preface","interactions":[],"lastModifiedDate":"2016-03-30T15:03:48","indexId":"70040982","displayToPublicDate":"2012-09-01T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"title":"Preface","docAbstract":"<p>Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on an understanding of the underlying principles behind the approach, knowing how to use the equipment and techniques properly, and recognizing what to do with the data collected. This book provides a road map for using telemetry to study aquatic animals, and provides the basic information needed to plan, implement, and conduct a telemetry study under field conditions. Topics include acoustic or radio telemetry study design, tag implantation techniques, radio and acoustic telemetry principles and case studies, and data management and analysis.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Telemetry techniques: A user guide for fisheries research","publisher":"American Fisheries Society","publisherLocation":"Bethesda, MD","isbn":"978-1-934874-26-4","usgsCitation":"Beeman, J.W., 2012, Preface, chap. <i>of</i> Telemetry techniques: A user guide for fisheries research.","numberOfPages":"518","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-036787","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":319652,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":319651,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://fisheries.org/bookstore/all-titles/professional-and-trade/55068c/"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"56fd020ce4b0a6037df2ca06","contributors":{"editors":[{"text":"Adams, Noah S. 0000-0002-8354-0293 nadams@usgs.gov","orcid":"https://orcid.org/0000-0002-8354-0293","contributorId":3521,"corporation":false,"usgs":true,"family":"Adams","given":"Noah","email":"nadams@usgs.gov","middleInitial":"S.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625678,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625679,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Eiler, John H.","contributorId":146952,"corporation":false,"usgs":false,"family":"Eiler","given":"John","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":625680,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Beeman, John W. jbeeman@usgs.gov","contributorId":2646,"corporation":false,"usgs":true,"family":"Beeman","given":"John","email":"jbeeman@usgs.gov","middleInitial":"W.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":625677,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70043930,"text":"70043930 - 2012 - Developing a broader scientific foundation for river restoration: Columbia River food webs","interactions":[],"lastModifiedDate":"2018-01-26T17:13:32","indexId":"70043930","displayToPublicDate":"2012-09-01T00:00:00","publicationYear":"2012","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3165,"text":"Proceedings of the National Academy of Sciences of the United States of America","active":true,"publicationSubtype":{"id":10}},"title":"Developing a broader scientific foundation for river restoration: Columbia River food webs","docAbstract":"Well-functioning food webs are fundamental for sustaining rivers as ecosystems and maintaining associated aquatic and terrestrial communities. The current emphasis on restoring habitat structure—without explicitly considering food webs—has been less successful than hoped in terms of enhancing the status of targeted species and often overlooks important constraints on ecologically effective restoration. We identify three priority food web-related issues that potentially impede successful river restoration: uncertainty about habitat carrying capacity, proliferation of chemicals and contaminants, and emergence of hybrid food webs containing a mixture of native and invasive species. Additionally, there is the need to place these food web considerations in a broad temporal and spatial framework by understanding the consequences of altered nutrient, organic matter (energy), water, and thermal sources and flows, reconnecting critical habitats and their food webs, and restoring for changing environments. 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A food web perspective for the Columbia River would complement ongoing approaches and enhance the ability to meet the vision and legal obligations of the US Endangered Species Act, the Northwest Power Act (Fish and Wildlife Program), and federal treaties with Northwest Indian Tribes while meeting fundamental needs for improved river management.","language":"English","publisher":"National Academy of Sciences","publisherLocation":"Washington, D.C.","doi":"10.1073/pnas.1213408109","usgsCitation":"Naiman, R.J., Alldredge, R., Beauchamp, D.A., Bisson, P.A., Congleton, J., Henny, C.J., Huntly, N., Lamberson, R., Levings, C., Merrill, E.N., Pearcy, W.G., Rieman, B.E., Ruggerone, G.T., Scarnecchia, D., Smouse, P.E., and Wood, C., 2012, Developing a broader scientific foundation for river restoration: Columbia River food webs: Proceedings of the National Academy of Sciences of the United States of America, v. 109, no. 52, p. 21201-21207, 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