{"pageNumber":"197","pageRowStart":"4900","pageSize":"25","recordCount":46670,"records":[{"id":70221492,"text":"70221492 - 2021 - Physiomorphic transformation in extreme endurance migrants: Revisiting the case of bar-tailed godwits preparing for trans-pacific flights","interactions":[],"lastModifiedDate":"2021-06-18T20:44:34.055777","indexId":"70221492","displayToPublicDate":"2021-06-17T15:40:19","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3910,"text":"Frontiers in Ecology and Evolution","onlineIssn":"2296-701X","active":true,"publicationSubtype":{"id":10}},"title":"Physiomorphic transformation in extreme endurance migrants: Revisiting the case of bar-tailed godwits preparing for trans-pacific flights","docAbstract":"<div class=\"JournalAbstract\"><p class=\"mb0\">In a 1998 paper entitled “Guts don’t fly: small digestive organs in obese bar-tailed godwits,”<span>&nbsp;</span>Piersma and Gill (1998)<span>&nbsp;</span>showed that the digestive organs were tiny and the fat loads huge in individuals suspected of embarking on a non-stop flight from Alaska to New Zealand. It was suggested that prior to migratory departure, these godwits would shrink the digestive organs used during fuel deposition and boost the size and capacity of exercise organs to optimize flight performance. Here we document the verity of the proposed physiomorphic changes by comparing organ sizes and body composition of bar-tailed godwits<span>&nbsp;</span><i>Limosa lapponica baueri</i><span>&nbsp;</span>collected in modesty midway during their fueling period (mid-September; fueling,<span>&nbsp;</span><i>n</i><span>&nbsp;</span>= 7) with the previously published data for godwits that had just departed on their trans-Pacific flight (October 19; flying,<span>&nbsp;</span><i>n</i><span>&nbsp;</span>= 9). Mean total body masses for the two groups were nearly identical, but nearly half of the body mass of fueling godwits consisted of water, while fat constituted over half of total body mass of flying godwits. The two groups also differed in their fat-free mass components. The heart and flight muscles were heavier in fueling godwits, but these body components constituted a relatively greater fraction of the fat-free mass in flying godwits. In contrast, organs related to digestion and homeostasis were heavier in fueling godwits, and most of these organ groups were also relatively larger in fueling godwits compared to flying godwits. These results reflect the functional importance of organ and muscle groups related to energy acquisition in fueling godwits and the consequences of flight-related exertion in flying godwits. The extreme physiomorphic changes apparently occurred over a short time window (≤1 month). We conclude that the inferences made on the basis of the 1998 paper were correct. The cues and stimuli which moderate these changes remain to be studied.</p></div>","language":"English","publisher":"Frontiers","doi":"10.3389/fevo.2021.685764","usgsCitation":"Piersma, T., Gill, R., and Ruthrauff, D.R., 2021, Physiomorphic transformation in extreme endurance migrants: Revisiting the case of bar-tailed godwits preparing for trans-pacific flights: Frontiers in Ecology and Evolution, v. 9, 685764, 8 p., https://doi.org/10.3389/fevo.2021.685764.","productDescription":"685764, 8 p.","ipdsId":"IP-127977","costCenters":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"links":[{"id":451834,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3389/fevo.2021.685764","text":"Publisher Index Page"},{"id":436302,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9GIQ8J2","text":"USGS data release","linkHelpText":"Body Composition of Bar-tailed Godwits (Limosa lapponica)"},{"id":386592,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"9","noUsgsAuthors":false,"publicationDate":"2021-06-17","publicationStatus":"PW","contributors":{"authors":[{"text":"Piersma, Theunis 0000-0001-9668-466X","orcid":"https://orcid.org/0000-0001-9668-466X","contributorId":203123,"corporation":false,"usgs":false,"family":"Piersma","given":"Theunis","email":"","affiliations":[{"id":36570,"text":"NIOZ Royal Netherlands Institute for Sea Research","active":true,"usgs":false}],"preferred":false,"id":817851,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Gill, Robert E. Jr. 0000-0002-6385-4500 rgill@usgs.gov","orcid":"https://orcid.org/0000-0002-6385-4500","contributorId":171747,"corporation":false,"usgs":true,"family":"Gill","given":"Robert E.","suffix":"Jr.","email":"rgill@usgs.gov","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":817852,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ruthrauff, Daniel R. 0000-0003-1355-9156 druthrauff@usgs.gov","orcid":"https://orcid.org/0000-0003-1355-9156","contributorId":4181,"corporation":false,"usgs":true,"family":"Ruthrauff","given":"Daniel","email":"druthrauff@usgs.gov","middleInitial":"R.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":817853,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70224953,"text":"70224953 - 2021 - Assessment of a conservative mixing model for the evaluation of constituent behavior below river confluences, Elqui River Basin, Chile","interactions":[],"lastModifiedDate":"2021-10-11T16:22:31.831914","indexId":"70224953","displayToPublicDate":"2021-06-17T11:17:59","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3301,"text":"River Research and Applications","active":true,"publicationSubtype":{"id":10}},"title":"Assessment of a conservative mixing model for the evaluation of constituent behavior below river confluences, Elqui River Basin, Chile","docAbstract":"<p><span>Fate and transport modeling of water-borne contaminants is a data demanding and costly endeavor, requiring considerable expes such, it becomes important to know when a complex modeling approach is required, and when a simpler approach is adequate. This is the main objective herein, where a conservative mixing model is used to characterize the transport of As, Cu, Fe, and SO</span><sub>4</sub><span>. The study area is divided into three sectors, corresponding to the upstream, middle, and downstream portions of the Elqui River Basin, Chile. In Sector 1, acidic conditions result in the conservative transport of constituents that are sourced from acid rock drainage. In Sector 2, pH increases and transport is influenced by pH-dependent reactions and the subsequent settling of the particulate phase. In Sector 3, there are no additional constituent inputs, and the constituents are conservatively transported downstream. Conservative transport within Sector 3 is confirmed through the development of a regression model that provides monthly estimates of SO</span><sub>4</sub><span>&nbsp;load. Whereas SO</span><sub>4</sub><span>&nbsp;and Cu concentrations are adequately approximated by the conservative mixing model, estimates of As and Fe concentrations exhibit larger errors, due to the more reactive behavior of these constituents. The fact that the simple, conservative mixing model describes SO</span><sub>4</sub><span>&nbsp;transport is a valuable result, as this constituent is known to be one of the primary indicators of mining-related contamination in rivers. The approach could also be a useful starting point for further evaluations of the effects of climate change and hydrological variability on the water quality of rivers.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/rra.3823","usgsCitation":"Rossi, C., Oyarzun, J., Pasten, P., Runkel, R.L., Núñez, J., Duhalde, D., Maturana, H., Rojas, E., Arumí, J., Castillo, D., and Oyarzun, R., 2021, Assessment of a conservative mixing model for the evaluation of constituent behavior below river confluences, Elqui River Basin, Chile: River Research and Applications, v. 37, no. 7, p. 967-978, https://doi.org/10.1002/rra.3823.","productDescription":"12 p.","startPage":"967","endPage":"978","ipdsId":"IP-117538","costCenters":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"links":[{"id":390393,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Chile","otherGeospatial":"Elqui River Basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -71.4605712890625,\n              -30.741835717889778\n            ],\n            [\n              -68.8348388671875,\n              -30.741835717889778\n            ],\n            [\n              -68.8348388671875,\n              -29.176145182559758\n            ],\n            [\n              -71.4605712890625,\n              -29.176145182559758\n            ],\n            [\n              -71.4605712890625,\n              -30.741835717889778\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"37","issue":"7","noUsgsAuthors":false,"publicationDate":"2021-06-17","publicationStatus":"PW","contributors":{"authors":[{"text":"Rossi, Catalina","contributorId":267243,"corporation":false,"usgs":false,"family":"Rossi","given":"Catalina","email":"","affiliations":[{"id":55453,"text":"U. La Serena","active":true,"usgs":false}],"preferred":false,"id":824827,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Oyarzun, Jorge","contributorId":267244,"corporation":false,"usgs":false,"family":"Oyarzun","given":"Jorge","email":"","affiliations":[{"id":55453,"text":"U. La Serena","active":true,"usgs":false}],"preferred":false,"id":824828,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Pasten, Pablo","contributorId":267245,"corporation":false,"usgs":false,"family":"Pasten","given":"Pablo","affiliations":[{"id":55454,"text":"Pontificia Universidad Católica","active":true,"usgs":false}],"preferred":false,"id":824829,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Runkel, Robert L. 0000-0003-3220-481X runkel@usgs.gov","orcid":"https://orcid.org/0000-0003-3220-481X","contributorId":685,"corporation":false,"usgs":true,"family":"Runkel","given":"Robert","email":"runkel@usgs.gov","middleInitial":"L.","affiliations":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"preferred":true,"id":824830,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Núñez, Jorge","contributorId":267246,"corporation":false,"usgs":false,"family":"Núñez","given":"Jorge","affiliations":[{"id":55453,"text":"U. La Serena","active":true,"usgs":false}],"preferred":false,"id":824831,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Duhalde, Denisse","contributorId":267247,"corporation":false,"usgs":false,"family":"Duhalde","given":"Denisse","email":"","affiliations":[{"id":55453,"text":"U. La Serena","active":true,"usgs":false}],"preferred":false,"id":824832,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Maturana, Hugo","contributorId":267248,"corporation":false,"usgs":false,"family":"Maturana","given":"Hugo","email":"","affiliations":[{"id":27795,"text":"Universidad Católica del Norte","active":true,"usgs":false}],"preferred":false,"id":824833,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Rojas, Eduardo","contributorId":267249,"corporation":false,"usgs":false,"family":"Rojas","given":"Eduardo","email":"","affiliations":[{"id":55453,"text":"U. La Serena","active":true,"usgs":false}],"preferred":false,"id":824834,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Arumí, José L.","contributorId":267250,"corporation":false,"usgs":false,"family":"Arumí","given":"José L.","affiliations":[{"id":49667,"text":"Universidad de Concepción","active":true,"usgs":false}],"preferred":false,"id":824835,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Castillo, Daniela","contributorId":267251,"corporation":false,"usgs":false,"family":"Castillo","given":"Daniela","email":"","affiliations":[{"id":55455,"text":"Universidad de La Serena","active":true,"usgs":false}],"preferred":false,"id":824837,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Oyarzun, Ricardo","contributorId":267252,"corporation":false,"usgs":false,"family":"Oyarzun","given":"Ricardo","email":"","affiliations":[{"id":55455,"text":"Universidad de La Serena","active":true,"usgs":false}],"preferred":false,"id":824838,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70223276,"text":"70223276 - 2021 - Prioritizing restoration areas to conserve multiple sagebrush-associated wildlife species","interactions":[],"lastModifiedDate":"2021-08-20T12:01:22.603183","indexId":"70223276","displayToPublicDate":"2021-06-17T10:24:39","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1015,"text":"Biological Conservation","active":true,"publicationSubtype":{"id":10}},"title":"Prioritizing restoration areas to conserve multiple sagebrush-associated wildlife species","docAbstract":"<p><span>Strategic restoration of altered habitat is one method for addressing worldwide biodiversity declines. Within the sagebrush&nbsp;steppe&nbsp;of western North America, habitat degradation has been linked to declines in many species, making restoration a priority for managers; however, limited funding, spatiotemporal variation in restoration success, and the need to manage for diverse wildlife species make decision-making regarding restoration actions challenging. To address the challenge of spatial conservation prioritization, we developed the Prioritizing Restoration of Sagebrush Ecosystems Tool (PReSET). This decision support tool utilizes the&nbsp;</span><i>prioritizr</i><span>&nbsp;package in program R and an integer linear programming algorithm to select parcels representing both high biodiversity value and high probability of restoration success. We tested PReSET on a sagebrush steppe system within southwestern Wyoming using distributional data for six species with diverse life histories and a spatial layer of predicted sagebrush recovery times to identify restoration targets at both broad and local scales. While the broad-scale portion of our tool outputs can inform policy, the local-scale results can be applied directly to on-the-ground restoration. We identified restoration priority areas with greater precision than existing spatial prioritizations and incorporated range differences among species. We noted&nbsp;tradeoffs, including that restoring for habitat connectivity may require restoration actions in areas with lower probability of success. Future applications of PReSET will draw from emerging datasets, including spatially-varying economic costs of restoration, animal movement data, and additional species, to further improve our ability to target effective sagebrush restoration.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.biocon.2021.109212","usgsCitation":"Duchardt, C.J., Monroe, A., Heinrichs, J.A., O’Donnell, M.S., Edmunds, D.R., and Aldridge, C.L., 2021, Prioritizing restoration areas to conserve multiple sagebrush-associated wildlife species: Biological Conservation, v. 260, 109212, 12 p., https://doi.org/10.1016/j.biocon.2021.109212.","productDescription":"109212, 12 p.","ipdsId":"IP-126263","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":451836,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.biocon.2021.109212","text":"Publisher Index Page"},{"id":436303,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9VJXJNY","text":"USGS data release","linkHelpText":"Spatial layers generated by the Prioritizing Restoration of Sagebrush Ecosystems Tool (PReSET) applied in Southern Wyoming"},{"id":388154,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wyoming","otherGeospatial":"Wyoming Landscape Conservation Initiative","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -106.083984375,\n              41.07935114946899\n            ],\n            [\n              -106.083984375,\n              42.19596877629178\n            ],\n            [\n              -107.16064453125,\n              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0000-0003-4563-0199","orcid":"https://orcid.org/0000-0003-4563-0199","contributorId":264471,"corporation":false,"usgs":true,"family":"Duchardt","given":"Courtney","email":"","middleInitial":"Jean","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":821568,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Monroe, Adrian P. 0000-0003-0934-8225 amonroe@usgs.gov","orcid":"https://orcid.org/0000-0003-0934-8225","contributorId":152209,"corporation":false,"usgs":true,"family":"Monroe","given":"Adrian P.","email":"amonroe@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":821569,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Heinrichs, Julie A. 0000-0001-7733-5034 jheinrichs@usgs.gov","orcid":"https://orcid.org/0000-0001-7733-5034","contributorId":193742,"corporation":false,"usgs":true,"family":"Heinrichs","given":"Julie","email":"jheinrichs@usgs.gov","middleInitial":"A.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":821570,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"O’Donnell, Michael S. 0000-0002-3488-003X odonnellm@usgs.gov","orcid":"https://orcid.org/0000-0002-3488-003X","contributorId":140876,"corporation":false,"usgs":true,"family":"O’Donnell","given":"Michael","email":"odonnellm@usgs.gov","middleInitial":"S.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":821571,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Edmunds, David R. 0000-0002-5212-8271 dedmunds@usgs.gov","orcid":"https://orcid.org/0000-0002-5212-8271","contributorId":152210,"corporation":false,"usgs":true,"family":"Edmunds","given":"David","email":"dedmunds@usgs.gov","middleInitial":"R.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":821572,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Aldridge, Cameron L. 0000-0003-3926-6941 aldridgec@usgs.gov","orcid":"https://orcid.org/0000-0003-3926-6941","contributorId":191773,"corporation":false,"usgs":true,"family":"Aldridge","given":"Cameron","email":"aldridgec@usgs.gov","middleInitial":"L.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":false,"id":821573,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70221586,"text":"70221586 - 2021 - Enhanced terrestrial runoff during Oceanic Anoxic Event 2 on the North Carolina Coastal Plain, USA","interactions":[],"lastModifiedDate":"2021-06-24T14:41:03.659695","indexId":"70221586","displayToPublicDate":"2021-06-17T09:29:01","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1250,"text":"Climate of the Past","active":true,"publicationSubtype":{"id":10}},"title":"Enhanced terrestrial runoff during Oceanic Anoxic Event 2 on the North Carolina Coastal Plain, USA","docAbstract":"<p><span>A global increase in the strength of the hydrologic cycle drove an increase in the flux of terrigenous sediments into the ocean during the Cenomanian–Turonian Oceanic Anoxic Event&nbsp;2 (OAE2) and was an important mechanism driving nutrient enrichment and thus organic carbon burial. This global change is primarily known from isotopic records, but global average data do not tell us anything about changes at any particular location. Reconstructions of local terrigenous flux can help us understand the role of regional shifts in precipitation in driving these global trends. The proto-North Atlantic basin was one of the epicenters of enhanced organic carbon burial during OAE2, so constraining terrigenous flux is particularly important in this region; however, few local records exist. Here, we present two new OAE2 records from the Atlantic Coastal Plain of North Carolina, USA, recognized with calcareous nannoplankton biostratigraphy and organic carbon isotopes. We use carbon </span><span class=\"inline-formula\"><span id=\"MathJax-Element-1-Frame\" class=\"MathJax\" data-mathml=\"<math xmlns=&quot;http://www.w3.org/1998/Math/MathML&quot; id=&quot;M1&quot; display=&quot;inline&quot; overflow=&quot;scroll&quot; dspmath=&quot;mathml&quot;><mo>/</mo></math>\"><span id=\"M1\" class=\"math\"><span><span id=\"MathJax-Span-2\" class=\"mrow\"><span id=\"MathJax-Span-3\" class=\"mo\">/</span></span></span></span></span></span><span> nitrogen ratios to constrain the relative contribution of marine and terrestrial organic matter; in both cores we find an elevated contribution from vascular plants beginning just before OAE2 and continuing through the event, indicating a locally strengthened hydrologic cycle. Terrigenous flux decreased during the brief change in carbon isotope values known as the Plenus carbon isotope excursion; it then increased and remained elevated through the latter part of OAE2. Total organic carbon (TOC) values reveal relatively low organic carbon burial in the inner shelf, in contrast to black shales known from the open ocean. Organic carbon content on the shelf appears to increase in the offshore direction, highlighting the need for cores from the middle and outer shelf.</span></p>","language":"English","publisher":"European Geosciences Union","doi":"10.5194/cp-17-1227-2021","usgsCitation":"Lowery, C.M., Self-Trail, J., and Barrie, C., 2021, Enhanced terrestrial runoff during Oceanic Anoxic Event 2 on the North Carolina Coastal Plain, USA: Climate of the Past, v. 17, p. 1227-1242, https://doi.org/10.5194/cp-17-1227-2021.","productDescription":"16 p.","startPage":"1227","endPage":"1242","ipdsId":"IP-127010","costCenters":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"links":[{"id":451839,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.5194/cp-17-1227-2021","text":"Publisher Index Page"},{"id":386698,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"North Carolina","county":"Bertie County, Craven County","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -78.0355453491211,\n              36.02452921570427\n            ],\n            [\n              -78.01271438598633,\n              36.02452921570427\n            ],\n            [\n              -78.01271438598633,\n              36.038966603853346\n            ],\n            [\n              -78.0355453491211,\n              36.038966603853346\n            ],\n            [\n              -78.0355453491211,\n              36.02452921570427\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -77.34272003173828,\n              35.23608538338967\n            ],\n            [\n              -77.26993560791016,\n              35.23608538338967\n            ],\n            [\n              -77.26993560791016,\n              35.302797817405796\n            ],\n            [\n              -77.34272003173828,\n              35.302797817405796\n            ],\n            [\n              -77.34272003173828,\n              35.23608538338967\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"17","noUsgsAuthors":false,"publicationDate":"2021-06-17","publicationStatus":"PW","contributors":{"authors":[{"text":"Lowery, Christopher M","contributorId":260618,"corporation":false,"usgs":false,"family":"Lowery","given":"Christopher","email":"","middleInitial":"M","affiliations":[{"id":52624,"text":"Univ. of Texas-Austin","active":true,"usgs":false}],"preferred":false,"id":818199,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Self-Trail, Jean 0000-0002-3018-4985 jstrail@usgs.gov","orcid":"https://orcid.org/0000-0002-3018-4985","contributorId":147370,"corporation":false,"usgs":true,"family":"Self-Trail","given":"Jean","email":"jstrail@usgs.gov","affiliations":[{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true},{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"preferred":true,"id":818200,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Barrie, Craig","contributorId":260619,"corporation":false,"usgs":false,"family":"Barrie","given":"Craig","email":"","affiliations":[{"id":52625,"text":"Geomark, Ltd.","active":true,"usgs":false}],"preferred":false,"id":818201,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70250112,"text":"70250112 - 2021 - Extensibility of U-net neural network model for hydrographic feature extraction and implications for hydrologic modeling","interactions":[],"lastModifiedDate":"2023-11-21T11:53:06.136867","indexId":"70250112","displayToPublicDate":"2021-06-17T09:16:07","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3250,"text":"Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Extensibility of U-net neural network model for hydrographic feature extraction and implications for hydrologic modeling","docAbstract":"<p><span>Accurate maps of regional surface water features are integral for advancing ecologic, atmospheric and land development studies. The only comprehensive surface water feature map of Alaska is the National Hydrography Dataset (NHD). NHD features are often digitized representations of historic topographic map blue lines and may be outdated. Here we test deep learning methods to automatically extract surface water features from airborne interferometric synthetic aperture radar (IfSAR) data to update and validate Alaska hydrographic databases. U-net artificial neural networks (ANN) and high-performance computing (HPC) are used for supervised hydrographic feature extraction within a study area comprised of 50 contiguous watersheds in Alaska. Surface water features derived from elevation through automated flow-routing and manual editing are used as training data. Model extensibility is tested with a series of 16 U-net models trained with increasing percentages of the study area, from about 3 to 35 percent. Hydrography is predicted by each of the models for all watersheds not used in training. Input raster layers are derived from digital terrain models, digital surface models, and intensity images from the IfSAR data. Results indicate about 15 percent of the study area is required to optimally train the ANN to extract hydrography when F1-scores for tested watersheds average between 66 and 68. Little benefit is gained by training beyond 15 percent of the study area. Fully connected hydrographic networks are generated for the U-net predictions using a novel approach that constrains a D-8 flow-routing approach to follow U-net predictions. This work demonstrates the ability of deep learning to derive surface water feature maps from complex terrain over a broad area.</span></p>","language":"English","publisher":"MDPI","doi":"10.3390/rs13122368","usgsCitation":"Stanislawski, L.V., Shavers, E.J., Wang, S., Jiang, Z., Usery, E., Moak, E., Duffy, A., and Schott, J., 2021, Extensibility of U-net neural network model for hydrographic feature extraction and implications for hydrologic modeling: Remote Sensing, v. 13, no. 12, 2368, 27 p., https://doi.org/10.3390/rs13122368.","productDescription":"2368, 27 p.","ipdsId":"IP-128026","costCenters":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"links":[{"id":451842,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/rs13122368","text":"Publisher Index 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,{"id":70221538,"text":"70221538 - 2021 - Ecogeographic variation and taxonomic boundaries in Large Treeshrews (Scandentia, Tupaiidae: Tupaia tana Raffles, 1821) from Southeast Asia","interactions":[],"lastModifiedDate":"2021-08-17T15:18:53.1471","indexId":"70221538","displayToPublicDate":"2021-06-17T07:32:24","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2373,"text":"Journal of Mammalogy","onlineIssn":"1545-1542","printIssn":"0022-2372","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Ecogeographic variation and taxonomic boundaries in Large Treeshrews (Scandentia, Tupaiidae: <i>Tupaia tana</i> Raffles, 1821) from Southeast Asia","title":"Ecogeographic variation and taxonomic boundaries in Large Treeshrews (Scandentia, Tupaiidae: Tupaia tana Raffles, 1821) from Southeast Asia","docAbstract":"<p><span>The Large Treeshrew,&nbsp;</span><i>Tupaia tana</i><span>&nbsp;Raffles, 1821, is a small mammal (~205 g) from Southeast Asia with a complicated taxonomic history. Currently, 15 subspecies are recognized from Borneo, Sumatra, and smaller islands, and many were originally differentiated based on minor pelage differences and small sample sizes. We explored intraspecific variation in&nbsp;</span><i>T. tana</i><span>&nbsp;using quantitative osteological data obtained from the hands and skulls of museum specimens. Multivariate analyses reveal extensive overlap among&nbsp;</span><i>T. tana</i><span>&nbsp;populations in morphospace, indicating that the majority of currently recognized subspecies are not morphometrically distinct. In contrast, the separation between Bornean and Sumatran populations of&nbsp;</span><i>T. tana</i><span>&nbsp;is sufficient to recognize them as different subspecies. Comparisons of Bornean specimens to those on small, offshore islands reveal that the latter average smaller body size. This pattern is inconsistent with Foster’s island rule, which predicts that island populations of small mammals (&lt; 5 kg) will average larger body size relative to mainland forms. A similar lack of support for ecogeographic rules has been noted in&nbsp;</span><i>T. glis</i><span>&nbsp;(Diard, 1820), suggesting that these “rules” are poor predictors of geographic variation in treeshrews.</span></p>","language":"English","publisher":"Oxford University Press","doi":"10.1093/jmammal/gyab059","usgsCitation":"Juman, M.M., Woodman, N., Olson, L.E., and Sargis, E.J., 2021, Ecogeographic variation and taxonomic boundaries in Large Treeshrews (Scandentia, Tupaiidae: Tupaia tana Raffles, 1821) from Southeast Asia: Journal of Mammalogy, v. 102, no. 4, p. 1054-1066, https://doi.org/10.1093/jmammal/gyab059.","productDescription":"13 p.","startPage":"1054","endPage":"1066","ipdsId":"IP-126399","costCenters":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":386646,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Southeast Asia","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              88.76953125,\n              -11.695272733029402\n            ],\n            [\n              162.0703125,\n              -11.695272733029402\n            ],\n            [\n              162.0703125,\n              27.059125784374068\n            ],\n            [\n              88.76953125,\n              27.059125784374068\n            ],\n            [\n              88.76953125,\n              -11.695272733029402\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"102","issue":"4","noUsgsAuthors":false,"publicationDate":"2021-06-17","publicationStatus":"PW","contributors":{"authors":[{"text":"Juman, Maya M. 0000-0002-0211-0655","orcid":"https://orcid.org/0000-0002-0211-0655","contributorId":260457,"corporation":false,"usgs":false,"family":"Juman","given":"Maya","email":"","middleInitial":"M.","affiliations":[{"id":37550,"text":"Yale University","active":true,"usgs":false}],"preferred":false,"id":817993,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Woodman, Neal 0000-0003-2689-7373 nwoodman@usgs.gov","orcid":"https://orcid.org/0000-0003-2689-7373","contributorId":3547,"corporation":false,"usgs":true,"family":"Woodman","given":"Neal","email":"nwoodman@usgs.gov","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":817994,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Olson, Link E. 0000-0002-2481-5701","orcid":"https://orcid.org/0000-0002-2481-5701","contributorId":203887,"corporation":false,"usgs":false,"family":"Olson","given":"Link","email":"","middleInitial":"E.","affiliations":[{"id":36743,"text":"University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775, USA","active":true,"usgs":false}],"preferred":false,"id":817995,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Sargis, Eric J. 0000-0003-0424-3803","orcid":"https://orcid.org/0000-0003-0424-3803","contributorId":203885,"corporation":false,"usgs":false,"family":"Sargis","given":"Eric","email":"","middleInitial":"J.","affiliations":[{"id":36741,"text":"Department of Anthropology, Yale University, P.O. 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,{"id":70221549,"text":"70221549 - 2021 - Detecting subtle change from dense landsat time series: Case studies of mountain pine beetle and spruce beetle disturbance","interactions":[],"lastModifiedDate":"2021-06-23T12:28:09.472652","indexId":"70221549","displayToPublicDate":"2021-06-17T06:59:46","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3254,"text":"Remote Sensing of Environment","printIssn":"0034-4257","active":true,"publicationSubtype":{"id":10}},"title":"Detecting subtle change from dense landsat time series: Case studies of mountain pine beetle and spruce beetle disturbance","docAbstract":"<p><span>In contrast to abrupt changes caused by land cover conversion, subtle changes driven by a shift in the condition, structure, or other biological attributes of land often lead to minimal and slower alterations of the terrestrial surface. Accurate mapping and monitoring of subtle change are crucial for an early warning of long-term gradual change that may eventually result in land cover conversion. Freely accessible moderate-resolution datasets such as the&nbsp;</span>Landsat<span>&nbsp;archive have great potential to characterize subtle change by capturing low-magnitude spectral changes in long-term observations. However, past studies have reported limited success in accurately extracting subtle changes from satellite-based time series analysis. In this study, we introduce a supervised framework named ‘PIDS’ to detect subtle forest disturbance from a comprehensive Landsat data archive by leveraging disturbance-based calibration sites. PIDS consists of four components: (1) Parameter optimization; (2) Index selection; (3) Dynamic stratified monitoring; and (4) Spatial consideration. PIDS was applied to map the early stage of bark beetle infestations (i.e., a lower per-pixel fraction of trees cover that show visual signs of infestation), which are a typical example of subtle change in conifer forests. Landsat Analysis Ready Data were used as the time series inputs for mapping mountain pine beetle and spruce beetle disturbance between 2001 and 2019 in Colorado, USA. PIDS-detection map assessment showed that the overall performance of PIDS (namely ‘F1 score’) was 0.86 for mountain pine beetle and 0.73 for spruce beetle, making a substantial improvement (&gt; 0.3) compared to other approaches/products including COntinuous monitoring of Land Disturbance, LandTrendr, and the National Land Cover Database forest disturbance product. A sub-pixel analysis of tree canopy mortality percentage was performed by linking classified high-resolution (0.3- and 1-m)&nbsp;aerial imagery&nbsp;and 30-m PIDS-detection maps. Results show that PIDS typically detects mountain pine beetle infestation when ≥56% of a Landsat pixel is occupied by red-stage canopy mortality (one year after initial infestation), and spruce beetle infestation when ≥55% is occupied by gray-stage mortality (two years after initial infestation). This study addresses an important methodological goal pertinent to the utility of event-based reference samples for detecting subtle forest change, which could be potentially applied to other types of subtle land change.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.rse.2021.112560","usgsCitation":"Ye, S., Rogan, J., Zhu, Z., Hawbaker, T., Hart, S., Andrus, R.A., Meddens, A.J., Hicke, J.A., Eastman, J.R., and Kulakowski, D., 2021, Detecting subtle change from dense landsat time series: Case studies of mountain pine beetle and spruce beetle disturbance: Remote Sensing of Environment, v. 263, 112560, 16 p., https://doi.org/10.1016/j.rse.2021.112560.","productDescription":"112560, 16 p.","ipdsId":"IP-124774","costCenters":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"links":[{"id":488056,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.rse.2021.112560","text":"Publisher Index Page"},{"id":386642,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Colorado","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -109.0283203125,\n              37.020098201368114\n            ],\n            [\n              -106.14990234375,\n              37.020098201368114\n            ],\n            [\n              -106.14990234375,\n              40.91351257612758\n            ],\n            [\n              -109.0283203125,\n              40.91351257612758\n            ],\n            [\n              -109.0283203125,\n              37.020098201368114\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"263","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Ye, Su","contributorId":260471,"corporation":false,"usgs":false,"family":"Ye","given":"Su","email":"","affiliations":[{"id":24788,"text":"Clark University","active":true,"usgs":false}],"preferred":false,"id":818017,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Rogan, John","contributorId":260472,"corporation":false,"usgs":false,"family":"Rogan","given":"John","affiliations":[{"id":24788,"text":"Clark University","active":true,"usgs":false}],"preferred":false,"id":818018,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Zhu, Zhe","contributorId":260473,"corporation":false,"usgs":false,"family":"Zhu","given":"Zhe","affiliations":[{"id":36710,"text":"University of Connecticut","active":true,"usgs":false}],"preferred":false,"id":818019,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hawbaker, Todd 0000-0003-0930-9154 tjhawbaker@usgs.gov","orcid":"https://orcid.org/0000-0003-0930-9154","contributorId":568,"corporation":false,"usgs":true,"family":"Hawbaker","given":"Todd","email":"tjhawbaker@usgs.gov","affiliations":[{"id":547,"text":"Rocky Mountain Geographic Science Center","active":true,"usgs":true},{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":818020,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hart, Sarah J.","contributorId":260474,"corporation":false,"usgs":false,"family":"Hart","given":"Sarah J.","affiliations":[{"id":18002,"text":"University of Wisconsin - Madison","active":true,"usgs":false}],"preferred":false,"id":818021,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Andrus, Robert A.","contributorId":260475,"corporation":false,"usgs":false,"family":"Andrus","given":"Robert","email":"","middleInitial":"A.","affiliations":[{"id":37380,"text":"Washington State University","active":true,"usgs":false}],"preferred":false,"id":818022,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Meddens, Arjan J.H.","contributorId":260476,"corporation":false,"usgs":false,"family":"Meddens","given":"Arjan","middleInitial":"J.H.","affiliations":[{"id":37380,"text":"Washington State University","active":true,"usgs":false}],"preferred":false,"id":818023,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Hicke, Jeffery A.","contributorId":260477,"corporation":false,"usgs":false,"family":"Hicke","given":"Jeffery","email":"","middleInitial":"A.","affiliations":[{"id":36394,"text":"University of Idaho","active":true,"usgs":false}],"preferred":false,"id":818024,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Eastman, J. Ronald","contributorId":260480,"corporation":false,"usgs":false,"family":"Eastman","given":"J.","email":"","middleInitial":"Ronald","affiliations":[{"id":24788,"text":"Clark University","active":true,"usgs":false}],"preferred":false,"id":818025,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Kulakowski, Dominik","contributorId":260482,"corporation":false,"usgs":false,"family":"Kulakowski","given":"Dominik","affiliations":[{"id":24788,"text":"Clark University","active":true,"usgs":false}],"preferred":false,"id":818026,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70221385,"text":"cir1484 - 2021 - U.S. Geological Survey landscape science strategy 2020–2030","interactions":[],"lastModifiedDate":"2021-06-17T10:21:11.812779","indexId":"cir1484","displayToPublicDate":"2021-06-16T15:48:57","publicationYear":"2021","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":307,"text":"Circular","code":"CIR","onlineIssn":"2330-5703","printIssn":"1067-084X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1484","displayTitle":"U.S. Geological Survey Landscape Science Strategy 2020–2030","title":"U.S. Geological Survey landscape science strategy 2020–2030","docAbstract":"<p>Across our Nation, multiple Federal, State, Tribal, and local governments are working with stakeholders and landowners to restore, conserve, and manage lands and resources to benefit fish, wildlife, and people. One of the largest Federal efforts is led by the U.S. Department of the Interior (DOI), with multiple DOI agencies working to conserve and manage public lands, resources, and cultural heritage for the benefit and enjoyment of current and future generations. As a science provider within the DOI, the U.S. Geological Survey (USGS) has an important role in developing actionable science products that can inform decision making on public lands and across all of our Nation’s landscapes.</p><p>Our landscapes and resources are undergoing continual change from a complex and interacting suite of stressors that include traditional and nontraditional land uses, a changing climate, a dynamic economy, and a culturally diverse and ever-changing society. Landscape science seeks to understand how the physical, biological, and social components of ecosystems and landscapes interact with each other and are affected by these stressors across local to global scales.</p><p>The USGS has developed this landscape science strategy to focus and strengthen the agency’s efforts to inform critical conservation, restoration, and management decisions for American landscapes. The strategy directly supports the overarching 21st-century science strategy of the USGS and expands our perspective and focus on partnerships, including with internal, external, traditional, and nontraditional partners.</p><p>The vision for USGS landscape science is to integrate multiple disciplines and approaches to create and deliver relevant, timely, and scientifically sound products that enable our partners to make informed decisions about how to manage complex interacting natural and human systems across changing American landscapes. This strategy seeks to leverage the expertise, data, analytical capacity, and tools of the agency and to strengthen integration of science efforts across programs and scales. A cornerstone of the strategy is working closely with landowners and resource managers to identify the science that is needed to inform management actions, and then working collaboratively with those same partners to coproduce science and data products that are timely, practical, and useful for their decision making.</p><p>Many individual efforts within the USGS already embrace landscape science ideas and practices. With the development of this strategy, we are seeking to build on these efforts and to focus agency attention and expertise on expanding, connecting, and institutionalizing core practices and approaches for landscape science that produces actionable science products and tools that decision makers can use to help conserve and manage American landscapes.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/cir1484","isbn":"978-1-4113-4419-8","programNote":"Land Management Research Program","usgsCitation":"Jenni, K.E., Carter, S.K., Aumen, N.G., Bowen, Z.H., Bradford, J.B., Chotkowski, M.A., Hsu, L., Murdoch, P.S., Phillips, S.W., Pope, K.L., Schuster, R., Steinkamp, M.J., Weltzin, J., and Xian, G.Z., 2021, U.S. Geological Survey landscape science strategy 2020–2030: U.S. Geological Survey Circular 1484, 26 p., https://doi.org/10.3133/cir1484.","productDescription":"v, 26 p.","numberOfPages":"36","onlineOnly":"N","ipdsId":"IP-121985","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":506,"text":"Office of the AD Ecosystems","active":true,"usgs":true},{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true},{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":386449,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/circ/1484/coverthb.jpg"},{"id":386450,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/circ/1484/cir1484.pdf","text":"Report","size":"14.4 MB","linkFileType":{"id":1,"text":"pdf"},"description":"Circular 1484"}],"contact":"<p>Associate Director, <a data-mce-href=\"https://www.usgs.gov/mission-areas/ecosystems\" href=\"https://www.usgs.gov/mission-areas/ecosystems\">Ecosystems Mission Area</a><br>U.S. Geological Survey<br>Mail Stop 300 <br>12201 Sunrise Valley Drive <br>Reston, VA 20192</p><p><a data-mce-href=\"https://www.usgs.gov/mission-areas/ecosystems/land-management-research-program\" href=\"https://www.usgs.gov/mission-areas/ecosystems/land-management-research-program\">Land Management Research Program</a></p><p><a data-mce-href=\"../contact\" href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Executive Summary</li><li>Introduction</li><li>USGS Landscape Science Strategy</li><li>Goals</li><li>Supporting Strategic Actions</li><li>Planning Implementation of the Science Strategy</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2021-06-16","noUsgsAuthors":false,"publicationDate":"2021-06-16","publicationStatus":"PW","contributors":{"authors":[{"text":"Jenni, Karen E. 0000-0001-9927-7509","orcid":"https://orcid.org/0000-0001-9927-7509","contributorId":219377,"corporation":false,"usgs":true,"family":"Jenni","given":"Karen E.","affiliations":[{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true}],"preferred":true,"id":817477,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Carter, Sarah K. 0000-0003-3778-8615","orcid":"https://orcid.org/0000-0003-3778-8615","contributorId":192418,"corporation":false,"usgs":true,"family":"Carter","given":"Sarah","email":"","middleInitial":"K.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":817478,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Aumen, Nicholas G. 0000-0002-5277-2630 naumen@usgs.gov","orcid":"https://orcid.org/0000-0002-5277-2630","contributorId":5418,"corporation":false,"usgs":true,"family":"Aumen","given":"Nicholas","email":"naumen@usgs.gov","middleInitial":"G.","affiliations":[{"id":5064,"text":"Southeast Regional Director's Office","active":true,"usgs":true},{"id":13415,"text":"Everglades National Park","active":true,"usgs":false}],"preferred":true,"id":817479,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bowen, Zachary H. 0000-0002-8656-1831 bowenz@usgs.gov","orcid":"https://orcid.org/0000-0002-8656-1831","contributorId":821,"corporation":false,"usgs":true,"family":"Bowen","given":"Zachary","email":"bowenz@usgs.gov","middleInitial":"H.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":817480,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bradford, John B. 0000-0001-9257-6303 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schusterr@usgs.gov","orcid":"https://orcid.org/0000-0003-2353-8500","contributorId":3119,"corporation":false,"usgs":true,"family":"Schuster","given":"Rudy","email":"schusterr@usgs.gov","affiliations":[],"preferred":true,"id":817487,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Steinkamp, Melanie J. 0000-0001-9322-609X","orcid":"https://orcid.org/0000-0001-9322-609X","contributorId":101773,"corporation":false,"usgs":false,"family":"Steinkamp","given":"Melanie J.","affiliations":[],"preferred":false,"id":817488,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Weltzin, Jake 0000-0001-8641-6645 jweltzin@usgs.gov","orcid":"https://orcid.org/0000-0001-8641-6645","contributorId":196323,"corporation":false,"usgs":true,"family":"Weltzin","given":"Jake","email":"jweltzin@usgs.gov","affiliations":[{"id":506,"text":"Office of the AD Ecosystems","active":true,"usgs":true},{"id":433,"text":"National Phenology 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,{"id":70221457,"text":"sir20215057 - 2021 - Bathymetry of New York City’s East of Hudson reservoirs and controlled lakes, 2017 to 2019","interactions":[],"lastModifiedDate":"2021-06-17T10:15:19.443423","indexId":"sir20215057","displayToPublicDate":"2021-06-16T15:05:00","publicationYear":"2021","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-5057","displayTitle":"Bathymetry of New York City’s East of Hudson Reservoirs  and Controlled Lakes, 2017 to 2019","title":"Bathymetry of New York City’s East of Hudson reservoirs and controlled lakes, 2017 to 2019","docAbstract":"<p>New York City maintains an extensive system of reservoirs and aqueducts to provide drinking water to its residents, including 16 reservoirs and controlled lakes in Westchester and Putnam Counties in southern New York, east of the Hudson River (also called “East of Hudson reservoirs and controlled lakes”). These reservoirs were put into service from 1842 to 1915, and their capacities have likely changed since their original construction. To provide updated bathymetric surface, contour, and capacity data, the U.S. Geological Survey, in cooperation with New York City Department of Environmental Protection, surveyed the bathymetry of the 16 East of Hudson reservoirs and controlled lakes from 2017 to 2019 using a multibeam echosounder. The points measured with the multibeam echosounder were combined with light detection and ranging data to generate 3.28-foot raster grids of the bathymetric surfaces, bathymetric contours at 2-foot intervals of elevation, and elevation-area-capacity tables. The results of the bathymetric survey show that the East of Hudson reservoirs range from about 25 feet deep (Kirk Lake) to about 162 feet deep (Kensico Reservoir) and have a total capacity of 142.9 billion gallons, with a combined surface area of more than 11,600 acres.</p><p>The accuracy of the mapped bathymetric data was evaluated using quality assurance datasets collected with a single-beam echosounder; about 284,000 quality assurance points were spatially joined with the mapped raster surface to compute measurement errors. The calculated mean point elevation error for the East of Hudson reservoirs was 0.35 foot, the median error was 0.21 foot, and the 95-percent accuracy was 1.68 feet; the 95-percent accuracy of the computed capacity at spillway elevation was 1.6 percent or less. The largest errors occurred in the steepest areas of the reservoirs and in areas where the data were interpolated. Geospatial files of the bathymetry data, including mapped bathymetric surfaces, contours, and capacity tables, quality assurance points, and associated metadata are available for download as part of an accompanying U.S. Geological Survey data release.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20215057","collaboration":"Prepared in cooperation with the New York City Department of Environmental Protection","usgsCitation":"Nystrom, E.A., Huston, C.J., and Welk, R.J., 2021, Bathymetry of New York City’s East of Hudson reservoirs and controlled lakes, 2017 to 2019: U.S. Geological Survey Scientific Investigations Report 2021–5057, 46 p., https://doi.org/10.3133/sir20215057.","productDescription":"Report: viii, 46 p.; Data Release","numberOfPages":"46","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-119563","costCenters":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"links":[{"id":386538,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9ZZQ2OT","text":"USGS data release","linkHelpText":"Geospatial bathymetry datasets for New York City's East of Hudson Reservoirs and Controlled Lakes"},{"id":386537,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2021/5057/sir20215057.pdf","text":"Report","size":"30.3 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2021-5057"},{"id":386536,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2021/5057/coverthb2.jpg"}],"country":"United States","state":"New York","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -73.992919921875,\n              40.88029480552824\n            ],\n            [\n              -73.49853515625,\n              40.88029480552824\n            ],\n            [\n              -73.49853515625,\n              41.40153558289846\n            ],\n            [\n              -73.992919921875,\n              41.40153558289846\n            ],\n            [\n              -73.992919921875,\n              40.88029480552824\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_ny@usgs.gov\" data-mce-href=\"mailto:dc_ny@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/ny-water\" data-mce-href=\"https://www.usgs.gov/centers/ny-water\">New York Water Science Center</a><br>U.S. Geological Survey<br>425 Jordan Road<br>Troy, NY 12180–8349</p>","tableOfContents":"<ul><li>Abstract</li><li>Introduction</li><li>Data Collection and Processing Methods</li><li>Bathymetric Map Creation</li><li>Results of Bathymetric Surveys</li><li>Accuracy Assessment</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":11,"text":"Pembroke PSC"},"publishedDate":"2021-06-16","noUsgsAuthors":false,"publicationDate":"2021-06-16","publicationStatus":"PW","contributors":{"authors":[{"text":"Nystrom, Elizabeth A. 0000-0002-0886-3439 nystrom@usgs.gov","orcid":"https://orcid.org/0000-0002-0886-3439","contributorId":1072,"corporation":false,"usgs":true,"family":"Nystrom","given":"Elizabeth","email":"nystrom@usgs.gov","middleInitial":"A.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817759,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Huston, Courtney J. 0000-0002-1518-6448","orcid":"https://orcid.org/0000-0002-1518-6448","contributorId":260355,"corporation":false,"usgs":true,"family":"Huston","given":"Courtney","email":"","middleInitial":"J.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817760,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Welk, Robert J. 0000-0003-0852-5584 rwelk@usgs.gov","orcid":"https://orcid.org/0000-0003-0852-5584","contributorId":194109,"corporation":false,"usgs":true,"family":"Welk","given":"Robert","email":"rwelk@usgs.gov","middleInitial":"J.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817761,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70221472,"text":"sir20215032 - 2021 - Permeable groundwater pathways and tritium migration patterns from the HANDLEY underground nuclear test, Pahute Mesa, Nevada","interactions":[],"lastModifiedDate":"2021-06-17T10:26:00.248996","indexId":"sir20215032","displayToPublicDate":"2021-06-16T13:00:45","publicationYear":"2021","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-5032","displayTitle":"Permeable Groundwater Pathways and Tritium Migration Patterns from the HANDLEY Underground Nuclear Test, Pahute Mesa, Nevada","title":"Permeable groundwater pathways and tritium migration patterns from the HANDLEY underground nuclear test, Pahute Mesa, Nevada","docAbstract":"<p class=\"p1\">The HANDLEY nuclear test was detonated at about 2,700 feet below the water table on March 26, 1970, in Pahute Mesa, south-central Nevada. Measured tritium concentrations in boreholes <i>ER-20-12 </i>and <i>PM-3 </i>indicate that a shallow tritium plume has migrated more than 1 mile (mi) downgradient from the HANDLEY test within a semi-perched aquifer and deeper tritium plumes have migrated 4.5 miles (mi) within underlying regional aquifers. Boreholes <i>ER-20-12 </i>and <i>PM-3 </i>are in an area of moderate-to-low transmissivity, but observation of tritium moving 4.5 mi within 40 years of the detonation indicates that high-transmissivity intervals exist. However, the location of these permeable pathways is unknown.</p><p class=\"p1\">This report integrates geologic, hydrologic, and tritium data to infer the location of permeable pathways near and downgradient from the HANDLEY test. Numerical groundwater-flow and tritium-transport models were developed to estimate hydraulic and transport properties between the HANDLEY test and boreholes <i>ER-20-12 </i>and <i>PM-3</i>. Recharge, hydraulic-conductivity, specific-yield, specific-storage, and effective-porosity distributions were estimated with the numerical models by fitting simulated water-level altitudes, vertical-head differences, aquifer-test transmissivities, tritium concentrations, and drawdowns in wells <i>PM-3-1 </i>and <i>PM-3-2 </i>to measured equivalents. Drawdowns were estimated in wells <i>PM-3-1 </i>and <i>PM-3-2 </i>in response to groundwater withdrawals during the drilling of borehole <i>ER-20-12</i>. A modified hydrostratigraphic framework model (mHFM) was developed that incorporates hydrostratigraphic units (HSUs) from the Pahute Mesa–Oasis Valley hydrostratigraphic framework model (PMOV HFM). HSUs in the mHFM were modified from the PMOV HFM by grouping HSUs that, conceptually, are hydraulically similar and splitting HSUs based on water-level, aquifer-test, and tritium data.</p><p class=\"p1\">Shallow and deeper tritium plumes have migrated to borehole <i>ER-20-12 </i>from the HANDLEY test. The shallow plume migrated from the HANDLEY test through the Timber Mountain welded tuff aquifer, whereas the deeper plumes moved through the Belted Range aquifer (BRA) and modified pre-Belted Range lava flow aquifer (mPBRLFA). Simulated tritium concentrations indicate that the leading edges of tritium plumes reached borehole <i>ER-20-12 </i>by 1990. From 1970 to 2020, the simulated tritium load mostly occurs between borehole <i>ER-20-12 </i>and the HANDLEY test.</p><p class=\"p2\">An unmapped permeable feature was simulated between borehole <i>ER-20-12 </i>and the downgradient Ribbon Cliff structural zone. This permeable feature hydraulically connects the BRA and mPBRLFA with the Tiva Canyon aquifer (TCA). The TCA is the most transmissive unit in the study area. Simulated tritium from the deeper plumes moves through the permeable feature downgradient from borehole <i>ER-20-12 </i>and then migrates toward well <i>PM-3-1 </i>through the TCA. The leading edge of the deeper simulated tritium plumes reaches well <i>PM-3-1 </i>by 2010.</p><p class=\"p2\">The mHFM and PMOV HFM do not include a permeable HSU at the water table near borehole <i>PM-3</i>, which is necessary for numerical flow and transport models to match measured water levels, transmissivities, and tritium concentrations in well <i>PM-3-2</i>. Consistently higher measured tritium concentrations in shallow well <i>PM-3-2</i>, compared to deeper well <i>PM-3-1</i>, and a downward vertical gradient between these wells indicate that a permeable feature exists near the water table that causes faster tritium migration toward the shallow well. Reevaluation of the PMOV HFM and geologic investigations, such as drilling another well, are needed to more precisely understand the shallow permeable pathway from the Handley test to well <i>PM-3-2</i>.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20215032","collaboration":"Prepared in cooperation with the U.S. Department of Energy, National Nuclear Security Administration Nevada Site Office, Office of Environmental Management, under Interagency Agreement DE-EM0004969","usgsCitation":"Jackson, T.R., 2021, Permeable groundwater pathways and tritium migration patterns from the HANDLEY underground nuclear test, Pahute Mesa, Nevada: U.S. Geological Survey Scientific Investigations Report 2021–5032, 49 p., https://doi.org/10.3133/sir20215032.","productDescription":"Report: vii, 49 p.; Data Release","onlineOnly":"Y","ipdsId":"IP-120498","costCenters":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"links":[{"id":386552,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2021/5032/coverthb.jpg"},{"id":386553,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2021/5032/sir20215032.pdf","text":"Report","size":"2.8 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2021-5032"},{"id":386554,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9YRDQSN","text":"USGS data release","description":"USGS data release.","linkHelpText":"MODFLOW-2005 and MT3DMS models and supplemental data used to simulate groundwater flow and tritium transport from the HANDLEY underground nuclear test, Pahute Mesa, southern Nevada"}],"country":"United States","state":"Nevada","otherGeospatial":"Pahute Mesa","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -117.333984375,\n              36.491973470593685\n            ],\n            [\n              -115.79589843749999,\n              36.491973470593685\n            ],\n            [\n              -115.79589843749999,\n              37.94419750075404\n            ],\n            [\n              -117.333984375,\n              37.94419750075404\n            ],\n            [\n              -117.333984375,\n              36.491973470593685\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_nv@usgs.gov\" data-mce-href=\"mailto:dc_nv@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/nv- water\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/nv- water\">Nevada Water Science Center</a><br>U.S. Geological Survey <br>2730 N. Deer Run Road <br>Carson City, Nevada 89701</p>","tableOfContents":"<ul><li>Introduction</li><li>Conceptual Framework</li><li>Numerical Model Development and Calibration</li><li>Permeable Pathways from the HANDLEY Underground Nuclear Test</li><li>Tritium Migration from the HANDLEY Underground Nuclear Test</li><li>Data Incongruencies at Borehole PM-3</li><li>Model Limitations</li><li>Summary</li><li>Acknowledgments</li><li>References Cited</li></ul>","publishedDate":"2021-06-16","noUsgsAuthors":false,"publicationDate":"2021-06-16","publicationStatus":"PW","contributors":{"authors":[{"text":"Jackson, Tracie R. 0000-0001-8553-0323 tjackson@usgs.gov","orcid":"https://orcid.org/0000-0001-8553-0323","contributorId":150591,"corporation":false,"usgs":true,"family":"Jackson","given":"Tracie","email":"tjackson@usgs.gov","middleInitial":"R.","affiliations":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"preferred":false,"id":817781,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
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,{"id":70221869,"text":"70221869 - 2021 - Incorporating water quality analysis into navigation assessments as demonstrated in the Mississippi River Basin","interactions":[],"lastModifiedDate":"2021-07-13T10:12:39.278789","indexId":"70221869","displayToPublicDate":"2021-06-16T10:46:37","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":8957,"text":"Journal of Waterway, Port, Coastal, and Ocean Engineering","active":true,"publicationSubtype":{"id":10}},"title":"Incorporating water quality analysis into navigation assessments as demonstrated in the Mississippi River Basin","docAbstract":"<div class=\"NLM_sec NLM_sec_level_1 hlFld-Abstract\"><p>A description of historical and ambient water quality conditions is often required as part of navigational studies. This paper describes a series of tools developed by the USGS that can aid navigation managers in developing water quality assessments. The tools use R, a statistical software program, and provide methods to retrieve historical streamflow and water quality data, summarize observations, model concentrations and fluxes, and estimate seasonal, annual, and decadal trends. The utility of these tools is demonstrated by providing an analysis of the seasonal variability and long-term trends of nitrate plus nitrite, orthophosphate, and suspended sediment concentrations and fluxes at nine sites in the Mississippi River Basin. Trends in annual mean concentration and flux showed fairly stable nitrate plus nitrite at most of the nine sites, with increases in the Upper Mississippi and Missouri Rivers and decreases on the Illinois River over a 40-year period beginning in 1980. Orthophosphate concentration or flux increased at almost all sites over a similar time period. Conversely, a concurrent steady decline in suspended sediment concentrations and fluxes was noted at sites throughout the basin.</p></div>","language":"English","publisher":"ACSE","doi":"10.1061/(ASCE)WW.1943-5460.0000651","usgsCitation":"Kleiss, B., Murphy, J., Mayne, C.M., Allgeier, J.P., Edmondson, A.B., Ginsberg, K.C., Jones, K.E., Lauth, T.J., Moe, E.L., Murphy, J.W., and Allison, M., 2021, Incorporating water quality analysis into navigation assessments as demonstrated in the Mississippi River Basin: Journal of Waterway, Port, Coastal, and Ocean Engineering, v. 147, no. 5, 10 p., https://doi.org/10.1061/(ASCE)WW.1943-5460.0000651.","productDescription":"10 p.","ipdsId":"IP-124379","costCenters":[{"id":36532,"text":"Central Midwest Water Science Center","active":true,"usgs":true}],"links":[{"id":451853,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1061/(asce)ww.1943-5460.0000651","text":"Publisher Index 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Center","active":true,"usgs":true}],"preferred":false,"id":819098,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mayne, Casey M.","contributorId":260899,"corporation":false,"usgs":false,"family":"Mayne","given":"Casey","email":"","middleInitial":"M.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819191,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Allgeier, Jake P.","contributorId":260900,"corporation":false,"usgs":false,"family":"Allgeier","given":"Jake","email":"","middleInitial":"P.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819192,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Edmondson, Amanda B.","contributorId":260901,"corporation":false,"usgs":false,"family":"Edmondson","given":"Amanda","email":"","middleInitial":"B.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819193,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Ginsberg, Katrina C.","contributorId":260902,"corporation":false,"usgs":false,"family":"Ginsberg","given":"Katrina","email":"","middleInitial":"C.","affiliations":[{"id":13500,"text":"Tulane University","active":true,"usgs":false}],"preferred":false,"id":819194,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Jones, Keaton E.","contributorId":260903,"corporation":false,"usgs":false,"family":"Jones","given":"Keaton","email":"","middleInitial":"E.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819195,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Lauth, Timothy J.","contributorId":260904,"corporation":false,"usgs":false,"family":"Lauth","given":"Timothy","email":"","middleInitial":"J.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819196,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Moe, Emily L.","contributorId":260905,"corporation":false,"usgs":false,"family":"Moe","given":"Emily","email":"","middleInitial":"L.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819197,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Murphy, Julie W.","contributorId":260906,"corporation":false,"usgs":false,"family":"Murphy","given":"Julie","email":"","middleInitial":"W.","affiliations":[{"id":13502,"text":"US Army Corps of Engineers","active":true,"usgs":false}],"preferred":false,"id":819198,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Allison, Mead","contributorId":189572,"corporation":false,"usgs":false,"family":"Allison","given":"Mead","affiliations":[],"preferred":false,"id":819199,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70228499,"text":"70228499 - 2021 - Burbot (Lota lota) exhibit plasticity in life-history traits in a small drainage at the southwestern-most extent of the species’ native range","interactions":[],"lastModifiedDate":"2022-02-14T12:01:32.523329","indexId":"70228499","displayToPublicDate":"2021-06-15T09:56:48","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2166,"text":"Journal of Applied Ichthyology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Burbot (<i>Lota lota </i>) exhibit plasticity in life-history traits in a small drainage at the southwestern-most extent of the species’ native range","title":"Burbot (Lota lota) exhibit plasticity in life-history traits in a small drainage at the southwestern-most extent of the species’ native range","docAbstract":"Little is known about the life-history traits exhibited by burbot (Lota lota) throughout their circumpolar range.  Monitoring PIT-tagged burbot between lentic and lotic habits and collection of demographic data (length, age, sex, and maturity) were used to answer the following questions in the Torrey Creek drainage of west-central Wyoming, USA: 1) is there plasticity in the life-history traits of the burbot population, 2) do Trail Lake origin and Torrey Creek origin burbot interchange during the spawning period, and 3) is there a difference in growth and age at sexual maturity between Trial Lake and Torrey Creek?  We found plasticity in life history traits exists within a burbot population in a small drainage at the southwestern-most edge of the species native range.  Directional migration of PIT-tagged burbot in Trail Lake and Torrey Creek was monitored nearly continuously by tandem stream-width antennas. Thirty-five percent of lentic-origin burbot migrated upstream into Torrey Creek, and 11% of lotic-origin burbot migrated downstream of the antennas near the Torrey Creek inlet to Trail Lake.  Migratory activity of burbot was highest during the late winter and early spring at a time that coincided with spawning.  Additionally, Torrey Creek-origin burbot were smaller and younger than Trail Lake-origin burbot.  In addition to documenting migration, the sampling of small, sexually mature burbot in Torrey Creek suggests that stream-resident burbot reach maturity earlier than adfluvial and lacustrine burbot in Trail Lake.  Furthermore, high catch rates of age-0 burbot indicate that Torrey Creek upstream from Trail Lake provides nursery habitat to the burbot population.  Life history trait plasticity and spawning and nursery habitats documented in this study must be considered when selecting conservation actions for this unique burbot population.","language":"English","publisher":"Wiley","doi":"10.1111/jai.14243","usgsCitation":"Glaid, J., Guy, C.S., and Gerrity, P., 2021, Burbot (Lota lota) exhibit plasticity in life-history traits in a small drainage at the southwestern-most extent of the species’ native range: Journal of Applied Ichthyology, v. 37, no. 6, p. 875-884, https://doi.org/10.1111/jai.14243.","productDescription":"10 p.","startPage":"875","endPage":"884","ipdsId":"IP-117147","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":451872,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/jai.14243","text":"Publisher Index Page"},{"id":395846,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wyoming","otherGeospatial":"Bull Lake Creek, Boysen Reservoir, Dinwoody Creek, Torrey Creek, Wind River basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -109.35791015625,\n              43.644025847699496\n            ],\n            [\n              -109.5556640625,\n              43.75522505306928\n            ],\n            [\n              -109.8193359375,\n              43.644025847699496\n            ],\n            [\n              -109.31396484375,\n              42.73087427928485\n            ],\n            [\n              -109.13818359375,\n              42.48830197960227\n            ],\n            [\n              -108.12744140625,\n              42.24478535602799\n            ],\n            [\n              -107.8857421875,\n              42.48830197960227\n            ],\n            [\n              -107.07275390625,\n              42.342305278572816\n            ],\n            [\n              -106.23779296875,\n              42.114523952464246\n            ],\n            [\n              -105.97412109375,\n              42.049292638686836\n            ],\n            [\n              -105.71044921875,\n              42.16340342422401\n            ],\n            [\n              -105.75439453125,\n              42.4234565179383\n            ],\n            [\n              -106.01806640624999,\n              42.66628070564928\n            ],\n            [\n              -106.63330078125,\n              43.08493742707592\n            ],\n            [\n              -108.08349609375,\n              43.51668853502906\n            ],\n            [\n              -109.35791015625,\n              43.644025847699496\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"37","issue":"6","noUsgsAuthors":false,"publicationDate":"2021-07-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Glaid, Jeff","contributorId":275976,"corporation":false,"usgs":false,"family":"Glaid","given":"Jeff","email":"","affiliations":[{"id":54471,"text":"wyfg","active":true,"usgs":false}],"preferred":false,"id":834451,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Guy, Christopher S. 0000-0002-9936-4781 cguy@usgs.gov","orcid":"https://orcid.org/0000-0002-9936-4781","contributorId":2876,"corporation":false,"usgs":true,"family":"Guy","given":"Christopher","email":"cguy@usgs.gov","middleInitial":"S.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":5062,"text":"Office of the Chief Scientist for Ecosystems","active":true,"usgs":true}],"preferred":true,"id":834450,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Gerrity, Paul C.","contributorId":275977,"corporation":false,"usgs":false,"family":"Gerrity","given":"Paul C.","affiliations":[{"id":54471,"text":"wyfg","active":true,"usgs":false}],"preferred":false,"id":834452,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70222498,"text":"70222498 - 2021 - Movement of sediment through a burned landscape: Sediment volume observations and model comparisons in the San Gabriel Mountains, California, USA","interactions":[],"lastModifiedDate":"2021-07-30T12:53:39.663168","indexId":"70222498","displayToPublicDate":"2021-06-15T07:51:13","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2312,"text":"Journal of Geophysical Research","active":true,"publicationSubtype":{"id":10}},"title":"Movement of sediment through a burned landscape: Sediment volume observations and model comparisons in the San Gabriel Mountains, California, USA","docAbstract":"<div class=\"article-section__content en main\"><p>Post-wildfire changes to hydrologic and geomorphic systems can lead to widespread sediment redistribution. Understanding how sediment moves through a watershed is crucial for assessing hazards, developing debris flow inundation models, engineering sediment retention solutions, and quantifying the role that disturbances play in landscape evolution. In this study, we used terrestrial and airborne lidar to measure sediment redistribution in the 2016 Fish Fire, in the San Gabriel Mountains in southern California, USA. The lidar areas are in two adjacent watersheds, at spatial scales of 900&nbsp;m<sup>2</sup><span>&nbsp;</span>to 4&nbsp;km<sup>2</sup>, respectively. Terrestrial lidar data were acquired prior to rainfall, and two subsequent surveys show erosional change after rainstorms. Two airborne lidar flights occurred (1) 7&nbsp;months before, and (2) 14&nbsp;months after the fire ignition, capturing the erosional effects after rainfall. We found hillslope erosion dominated the overall sediment budget in the first rainy season after wildfire. Only 7% of the total erosion came from the active channel bed and channel banks, and the remaining 93% of eroded sediment was derived from hillslopes. Within the channelized portion of the watershed erosion/deposition could be generally described with topographic metrics used in a stream power equation. Observed sediment volumes were compared with four empirical models and one process-based model. We found that the best predictions of sediment volume were obtained from an empirical model developed in the same physiographic region. Moreover, this study showed that post-wildfire erosion rates in the San Gabriel Mountains attain the same magnitude as millennial time scale bedrock erosion rates.</p></div>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2020JF006053","usgsCitation":"Rengers, F.K., McGuire, L.A., Kean, J.W., Staley, D.M., Dobre, M., Robichaud, P.R., and Swetnam, T., 2021, Movement of sediment through a burned landscape: Sediment volume observations and model comparisons in the San Gabriel Mountains, California, USA: Journal of Geophysical Research, v. 126, no. 7, e2020JF006053, 25 p., https://doi.org/10.1029/2020JF006053.","productDescription":"e2020JF006053, 25 p.","ipdsId":"IP-128916","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":451875,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2020jf006053","text":"Publisher Index Page"},{"id":387576,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"San Gabriel Mountains","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -118.55621337890624,\n              34.01851844336969\n            ],\n            [\n              -117.257080078125,\n              34.01851844336969\n            ],\n            [\n              -117.257080078125,\n              34.56990638085636\n            ],\n            [\n              -118.55621337890624,\n              34.56990638085636\n            ],\n            [\n              -118.55621337890624,\n              34.01851844336969\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"126","issue":"7","noUsgsAuthors":false,"publicationDate":"2021-07-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Rengers, Francis K. 0000-0002-1825-0943 frengers@usgs.gov","orcid":"https://orcid.org/0000-0002-1825-0943","contributorId":150422,"corporation":false,"usgs":true,"family":"Rengers","given":"Francis","email":"frengers@usgs.gov","middleInitial":"K.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":820308,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McGuire, Luke A. 0000-0001-8178-7922 lmcguire@usgs.gov","orcid":"https://orcid.org/0000-0001-8178-7922","contributorId":203420,"corporation":false,"usgs":false,"family":"McGuire","given":"Luke","email":"lmcguire@usgs.gov","middleInitial":"A.","affiliations":[{"id":7042,"text":"University of Arizona","active":true,"usgs":false}],"preferred":false,"id":820309,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kean, Jason W. 0000-0003-3089-0369 jwkean@usgs.gov","orcid":"https://orcid.org/0000-0003-3089-0369","contributorId":1654,"corporation":false,"usgs":true,"family":"Kean","given":"Jason","email":"jwkean@usgs.gov","middleInitial":"W.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":820310,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Staley, Dennis M. 0000-0002-2239-3402 dstaley@usgs.gov","orcid":"https://orcid.org/0000-0002-2239-3402","contributorId":4134,"corporation":false,"usgs":true,"family":"Staley","given":"Dennis","email":"dstaley@usgs.gov","middleInitial":"M.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":820311,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dobre, Mariana","contributorId":261642,"corporation":false,"usgs":false,"family":"Dobre","given":"Mariana","email":"","affiliations":[{"id":36394,"text":"University of Idaho","active":true,"usgs":false}],"preferred":false,"id":820312,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Robichaud, Peter R.","contributorId":176259,"corporation":false,"usgs":false,"family":"Robichaud","given":"Peter","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":820313,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Swetnam, Tyson","contributorId":213550,"corporation":false,"usgs":false,"family":"Swetnam","given":"Tyson","email":"","affiliations":[{"id":38787,"text":"University of Arizona , BIO5 Institute, Tucson, AZ 85719","active":true,"usgs":false}],"preferred":false,"id":820314,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70228089,"text":"70228089 - 2021 - Citizen science data collection for integrated wildlife population analyses","interactions":[],"lastModifiedDate":"2022-02-03T12:50:55.544344","indexId":"70228089","displayToPublicDate":"2021-06-15T06:47:58","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3910,"text":"Frontiers in Ecology and Evolution","onlineIssn":"2296-701X","active":true,"publicationSubtype":{"id":10}},"title":"Citizen science data collection for integrated wildlife population analyses","docAbstract":"<div class=\"JournalAbstract\"><p class=\"mb0\">Citizen science, or community science, has emerged as a cost-efficient method to collect data for wildlife monitoring. To inform research and conservation, citizen science sampling designs should collect data that match the robust statistical analyses needed to quantify species and population patterns. Further increasing the contributions of citizen science, integrating citizen science data with other datasets and datatypes can improve population estimates and expand the spatiotemporal extent of inference. We demonstrate these points with a citizen science program called iSeeMammals developed in New York state in 2017 to supplement costly systematic spatial capture-recapture sampling by collecting opportunistic data from one-off observations, hikes, and camera traps. iSeeMammals has initially focused on the growing population of American black bear (<i>Ursus americanus</i>), with integrated analysis of iSeeMammals camera trap data with systematic data for a region with a growing bear population. The triumvirate of increased spatial and temporal coverage by at least twofold compared to systematic sampling, an 83% reduction in annual sampling costs, and improved density estimates when integrated with systematic data highlight the benefits of collecting presence-absence data in citizen science programs for estimating population patterns. Additional opportunities will come from applying presence-only data, which are oftentimes more prevalent than presence-absence data, to integrated models. Patterns in data submission and filtering also emphasize the importance of iteratively evaluating patterns in engagement, usability, and accessibility, especially focusing on younger adult and teenage demographics, to improve data quality and quantity. We explore how the development and use of integrated models may be paired with citizen science project design in order to facilitate repeated use of datasets in standalone and integrated analyses for supporting wildlife monitoring and informing conservation.</p></div>","language":"English","publisher":"Frontiers","doi":"10.3389/fevo.2021.682124","usgsCitation":"Sun, C., Hurst, J.E., and Fuller, A.K., 2021, Citizen science data collection for integrated wildlife population analyses: Frontiers in Ecology and Evolution, v. 9, 682124, 10 p., https://doi.org/10.3389/fevo.2021.682124.","productDescription":"682124, 10 p.","ipdsId":"IP-097114","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":451880,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3389/fevo.2021.682124","text":"Publisher Index Page"},{"id":395334,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"9","noUsgsAuthors":false,"publicationDate":"2021-06-15","publicationStatus":"PW","contributors":{"authors":[{"text":"Sun, Catherine C.","contributorId":243283,"corporation":false,"usgs":false,"family":"Sun","given":"Catherine C.","affiliations":[{"id":12722,"text":"Cornell University","active":true,"usgs":false}],"preferred":false,"id":833058,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hurst, Jeremy E.","contributorId":177504,"corporation":false,"usgs":false,"family":"Hurst","given":"Jeremy","email":"","middleInitial":"E.","affiliations":[{"id":13678,"text":"New York State Department of Environmental Conservation","active":true,"usgs":false}],"preferred":false,"id":833059,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fuller, Angela K. 0000-0002-9247-7468 afuller@usgs.gov","orcid":"https://orcid.org/0000-0002-9247-7468","contributorId":3984,"corporation":false,"usgs":true,"family":"Fuller","given":"Angela","email":"afuller@usgs.gov","middleInitial":"K.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":833057,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70221485,"text":"70221485 - 2021 - Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs","interactions":[],"lastModifiedDate":"2021-06-17T11:39:33.433744","indexId":"70221485","displayToPublicDate":"2021-06-15T06:37:53","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3331,"text":"San Francisco Estuary and Watershed Science","active":true,"publicationSubtype":{"id":10}},"title":"Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs","docAbstract":"<div id=\"main\"><div data-reactroot=\"\"><div class=\"body\"><div><div class=\"c-columns--sticky-sidebar\"><div class=\"c-tabs\"><div class=\"c-tabs__content\"><div class=\"c-tabcontent\"><div class=\"c-clientmarkup\"><p>Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management actions (e.g., fish guidance structures) to modify routing probabilities at this location.</p></div><a name=\"article_main\" class=\"mce-item-anchor\"></a>Main Content<div class=\"c-pdfview\"><button class=\"c-pdfview__button-view\">View Larger</button></div><div class=\"c-pdfview__viewer\"><div id=\"pdfjs-cdl-wrapper\"><div id=\"pdfjs-viewer\"><div id=\"outerContainer\"><div id=\"mainContainer\"><div id=\"viewerContainer\"><div id=\"viewer\" class=\"pdfViewer\"><div class=\"page\" data-page-number=\"1\" data-loaded=\"true\"><div class=\"textLayer\"><span>1</span><span>Sponsored by the Delta Science Program and the UC Davis Muir Institute</span><span>ABSTRACT</span><span>Survival of juvenile salmonids in the </span><span>Sacramento–San Joaquin Delta (Delta) varies </span><span>by migration route, and thus the proportion of </span><span>fish that use each route affects overall survival </span><span>through the Delta. Understanding factors that </span><span>drive routing at channel junctions along the </span><span>Sacramento River is therefore critical to devising </span><span>management strategies that maximize survival. </span><span>Here, we examine entrainment of acoustically </span><span>tagged juvenile Chinook Salmon into Sutter and </span><span>Steamboat sloughs from the Sacramento River. </span><span>Because these sloughs divert fish away from </span><span>the downstream entrances of the Delta Cross </span><span>Channel and Georgiana Slough (where fish access </span><span>SFEWS </span><span>Volume 19 | Issue 2 | Article 4</span><span>https://doi.org/10.15447/sfews.2021v19iss2art4</span><span>* </span><span>Corresponding author: </span><span>rperry@usgs.gov</span><span>1 </span><span>Western Fisheries Research Center </span><span>US Geological Survey </span><span>Cook, WA 98605 USA</span><span>2 </span><span>California Water Science Center </span><span>US Geological Survey </span><span>Sacramento, CA 95819 USA</span><span>3 </span><span>Current address: Mid-Columbia Fish and Wildlife </span><span>Conservation Office </span><span>Yakima Basin Program </span><span>US Fish and Wildlife Service </span><span>Yakima, WA 98903 USA</span><span>the low-survival region of the interior Delta), </span><span>management actions to increase fish entrainment </span><span>into Sutter and Steamboat sloughs are being </span><span>investigated to increase through-Delta survival. </span><span>Previous studies suggest that fish generally “go </span><span>with the flow”—as net flow into a divergence </span><span>increases, the proportion of fish that enter that </span><span>divergence correspondingly increases. However, </span><span>complex tidal hydrodynamics at sub-daily </span><span>time-scales may be decoupled from net flow. </span><span>Therefore, we modeled routing of acoustic tagged </span><span>juvenile salmon as a function of tidally varying </span><span>hydrodynamic data, which was collected using </span><span>temporary gaging stations deployed between </span><span>March and May of 2014. Our results indicate that </span><span>discharge, the proportion of flow that entered </span><span>the slough, and the rate of change of flow were </span><span>good predictors of an individual’s probability </span><span>of being entrained. In addition, interactions </span><span>between discharge and the proportion of flow </span><span>revealed a non-linear relationship between flow </span><span>and entrainment probability. We found that </span><span>the highest proportions of fish are likely to be </span><span>entrained into Steamboat Slough and Sutter </span><span>Slough on the ascending and descending limbs </span><span>of the tidal cycle, when flow changes from </span><span>positive to negative. Our findings characterize </span><span>how patterns of entrainment vary with tidal flow </span><span>fluctuations, providing information critical for </span><span>understanding the potential effect of management </span><span> RESEARCH</span><span>Effects of Tidally Varying River Flow on Entrainment </span><span>of Juvenile Salmon into Sutter and Steamboat </span><span>Sloughs </span><span>Jason G. Romine</span><span>1,3</span><span>, Russell W. Perry*</span><span>1</span><span>, Paul R. Stumpner</span><span>2</span><span>, Aaron R. Blake</span><span>2</span><span>, Jon R. Burau</span><span>2</span></div></div><div class=\"page\" data-page-number=\"2\" data-loaded=\"true\"><div class=\"textLayer\"><span>2</span><span>VOLUME 19, ISSUE 2, ARTICLE 4</span><span>actions (e.g., fish guidance structures) to modify </span><span>routing probabilities at this location. </span><span>KEY WORDS</span><span>Telemetry, juvenile salmon, migration routing, </span><span>survival</span><span>INTRODUCTION</span><span>The Sacramento–San Joaquin River Delta </span><span>(hereafter referred to as “the Delta”) is a complex </span><span>series of channels and embayments in west </span><span>central California of the United States. The Delta </span><span>has undergone drastic transformation through </span><span>construction of dikes, levees, reclaimed land, </span><span>dredged canals and cuts, and water export projects </span><span>(Nichols et al. 1986). The loss of habitat coupled </span><span>with introduction of non-native piscivorous fishes </span><span>has led to the decline of several salmonid stocks </span><span>that utilize the Delta (Lindley 2009; National </span><span>Marine Fisheries Service 2014). The physical </span><span>complexity of the Delta poses significant challenges </span><span>for understanding how juvenile salmon negotiate </span><span>the complex channel network and survive in </span><span>different migration routes. Yet such information is </span><span>critical for understanding how water-management </span><span>actions, such as operation of water diversions, </span><span>influence survival of juvenile salmon.</span><span>Through-Delta survival of juvenile Chinook </span><span>Salmon that emigrate from the Sacramento River </span><span>ranges from 10% to 80%, depending on river flow </span><span>and migration route (Perry et al. 2018). The Delta </span><span>can be broken down into four primary routes: </span><span>(1) Sacramento River, (2) Steamboat and Sutter </span><span>sloughs, (3) Georgiana Slough, and (4) Delta Cross </span><span>Channel (DCC). Fish that remain in the Sacramento </span><span>River consistently have the highest survival (Perry </span><span>et al. 2010, 2013, 2018). However, fish that enter </span><span>the interior Delta—the region to the south of the </span><span>Sacramento River (Figure 1)—have the lowest </span><span>survival among all routes and survive at less </span><span>than half the rate of fish in the Sacramento River, </span><span>likely as a result of longer migration times and </span><span>exposure to non-native predators (Newman and </span><span>Brandes 2010; Perry et al. 2018). On average, fish </span><span>that migrate through Steamboat and Sutter sloughs </span><span>exhibit survival similar to fish that remain in the </span><span>Sacramento River at high flows but have lower </span><span>survival at low flows (Perry et al. 2018). </span><span>Because of differences in survival among </span><span>migration routes, the proportion of fish that </span><span>use each route affects the total survival of the </span><span>population. Therefore, understanding the drivers </span><span>behind fish routing in the Delta is imperative </span><span>to inform management actions that help in the </span><span>recovery of imperiled salmonid populations in the </span><span>Central Valley. For example, Perry et al. (2013) </span><span>found that total survival through the Delta could </span><span>be increased by up to 7 percentage points by </span><span>eliminating entrainment into Georgiana Slough </span><span>and the DCC. These findings led to investigation </span><span>of management actions to reduce entrainment </span><span>into the DCC (Plumb et al. 2016) and Georgiana </span><span>Slough (Perry et al. 2014). </span><span>Both physical and non-physical barriers have </span><span>been tested at the entrance to Georgiana </span><span>Slough divergence (Perry et al. 2014; Romine </span><span>et al. 2016). A non-physical barrier was able </span><span>to reduce entrainment to the interior Delta </span><span>through Georgiana Slough (Perry et al. 2014), </span><span>but a floating fish-guidance structure reduced </span><span>entrainment to a lesser extent (Romine et al. </span><span>2016). Research and engineering solutions </span><span>to minimize entrainment have focused on </span><span>the Georgiana Slough divergence, the DCC </span><span>divergence, and the Old River divergence in the </span><span>San Joaquin River (Buchanan et al. 2013; SJRG </span><span>2013). However, there has been little focus on </span><span>understanding fish routing dynamics at other </span><span>primary river junctions in the Delta, such as </span><span>Sutter and Steamboat sloughs. </span><span>Sutter and Steamboat sloughs diverge from the </span><span>Sacramento about 10 km upstream from the DCC </span><span>and Georgiana slough, and represent the first </span><span>major junction that juvenile salmon encounter as </span><span>they enter the Delta from the Sacramento River </span><span>(</span><span>Figure 1</span><span>). Because Sutter and Steamboat sloughs </span><span>are upstream of the entrance to the interior Delta </span><span>via the DCC and Georgiana Slough (Figure 1), </span><span>juvenile salmon that enter Sutter and Steamboat </span><span>sloughs avoid entrainment into the interior Delta </span><span>where survival is low. Thus, management actions </span><span>to increase entrainment could increase overall.</span></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div>","language":"English","publisher":"University of California-Davis","doi":"10.15447/sfews.2021v19iss2art4","usgsCitation":"Romine, J., Perry, R., Stumpner, P., Blake, A.R., and Burau, J.R., 2021, Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs: San Francisco Estuary and Watershed Science, v. 19, no. 2, p. 1-17, https://doi.org/10.15447/sfews.2021v19iss2art4.","productDescription":"17 p.","startPage":"1","endPage":"17","ipdsId":"IP-076148","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true},{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":451885,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.15447/sfews.2021v19iss2art4","text":"Publisher Index Page"},{"id":436309,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9HSLFRE","text":"USGS data release","linkHelpText":"Tidal flow dynamics at Sutter and Steamboat Sloughs in the Sacramento-San Joaquin Delta, CA in 2014"},{"id":386562,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","otherGeospatial":"Sacramento–San Joaquin Delta","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -122.14736938476562,\n              38.070798163726785\n            ],\n            [\n              -121.92489624023436,\n              38.070798163726785\n            ],\n            [\n              -121.92489624023436,\n              38.25867146839721\n            ],\n            [\n              -122.14736938476562,\n              38.25867146839721\n            ],\n            [\n              -122.14736938476562,\n              38.070798163726785\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"19","issue":"2","noUsgsAuthors":false,"publicationDate":"2020-06-07","publicationStatus":"PW","contributors":{"authors":[{"text":"Romine, Jason G.","contributorId":207092,"corporation":false,"usgs":false,"family":"Romine","given":"Jason G.","affiliations":[{"id":37451,"text":"U.S. Fish & Wildlife Service, Mid-Columbia River National Wildlife Refuge Complex, 64 Maple St., Burbank, WA 99323","active":true,"usgs":false}],"preferred":false,"id":817812,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Perry, Russell 0000-0003-4110-8619","orcid":"https://orcid.org/0000-0003-4110-8619","contributorId":220189,"corporation":false,"usgs":true,"family":"Perry","given":"Russell","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":817813,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stumpner, Paul 0000-0002-0933-7895 pstump@usgs.gov","orcid":"https://orcid.org/0000-0002-0933-7895","contributorId":5667,"corporation":false,"usgs":true,"family":"Stumpner","given":"Paul","email":"pstump@usgs.gov","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817814,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Blake, Aaron R. 0000-0001-7348-2336 ablake@usgs.gov","orcid":"https://orcid.org/0000-0001-7348-2336","contributorId":5059,"corporation":false,"usgs":true,"family":"Blake","given":"Aaron","email":"ablake@usgs.gov","middleInitial":"R.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817815,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Burau, Jon R. 0000-0002-5196-5035 jrburau@usgs.gov","orcid":"https://orcid.org/0000-0002-5196-5035","contributorId":1500,"corporation":false,"usgs":true,"family":"Burau","given":"Jon","email":"jrburau@usgs.gov","middleInitial":"R.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817816,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70221406,"text":"sir20215025 - 2021 - Streambank erosion and related geomorphic change in Tuolumne Meadows, Yosemite National Park, California","interactions":[],"lastModifiedDate":"2021-06-15T14:03:46.782093","indexId":"sir20215025","displayToPublicDate":"2021-06-14T12:57:54","publicationYear":"2021","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-5025","displayTitle":"Streambank Erosion and Related Geomorphic Change in Tuolumne Meadows, Yosemite National Park, California","title":"Streambank erosion and related geomorphic change in Tuolumne Meadows, Yosemite National Park, California","docAbstract":"<p>Landscape change in Tuolumne Meadows, Yosemite National Park, California, was characterized using data derived from four lidar surveys: one airborne survey in 2006 and three terrestrial surveys in 2016, 2017, and 2018. These surveys were used to generate a better quantitative understanding of changes associated with fluvial processes along the reach of the Tuolumne River within Tuolumne Meadows. This research was performed to provide a scientific basis for restoration and management decisions made by the National Park Service in accordance with the Tuolumne Wild and Scenic River Final Comprehensive Management Plan. A total of 15 reaches of the streambanks along the Tuolumne River in Tuolumne Meadows were subject to measurable streambank erosion between 2006 and 2018. In these areas, streambank retreat rates ranged between 0 and 2.7 meters per year (m/yr), recorded as an average retreat distance along the length of changing streambank position, with most retreat rates being less than 0.50 m/yr. The highest streambank retreat rates are associated with a year of high spring streamflow in 2017. Based on the data available, it was concluded that deposition on channel and point bars balances streambank erosion over a period of 12 years along the Tuolumne River in Tuolumne Meadows. As such, the river could be considered to be in a state of dynamic equilibrium during this period; erosion and sedimentation occur in distinct pulses in response to hydrological forcing but it is not clear that there is a trend towards sediment accumulation or removal in Tuolumne Meadows nor is there an obvious trend toward channel widening or narrowing. The existence of visible paleochannels in the meadow are an indication that more dramatic channel planform geometry changes have occurred in Tuolumne Meadows over an undetermined period and may occur again in the future. Geomorphic change rates relate to hydrology; during the study period, the high water in 2017 led to the highest rates of geomorphic change. Land managers should anticipate that floods with discharge rates greater than the peak flow in 2017 may cause more substantial landscape change than what was observed in this study, but erosion resulting from these events may be balanced by channel and point-bar deposition over a period of years.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20215025","collaboration":"Prepared in cooperation with National Park Service","usgsCitation":"DeLong, S.B., Pickering, A.J., and Kuhn, T., 2021, Streambank erosion and related geomorphic change in Tuolumne Meadows, Yosemite National Park, California: U.S. Geological Survey Scientific Investigations Report 2021–5025, 87 p., https://doi.org/10.3133/sir20215025.","productDescription":"viii, 87 p.","numberOfPages":"87","onlineOnly":"Y","ipdsId":"IP-118934","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":386473,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2021/5025/sir20215025.pdf","text":"Report","size":"45 MB","linkFileType":{"id":1,"text":"pdf"}},{"id":386472,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2021/5025/covrthb.jpg"}],"country":"United States","state":"California","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -120.03936767578124,\n              37.461778479617465\n            ],\n            [\n              -118.85284423828124,\n              37.461778479617465\n            ],\n            [\n              -118.85284423828124,\n              38.0091482264894\n            ],\n            [\n              -120.03936767578124,\n              38.0091482264894\n            ],\n            [\n              -120.03936767578124,\n              37.461778479617465\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"https://www.usgs.gov/centers/earthquake-science-center\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/earthquake-science-center\">Earthquake Science Center</a>—Menlo Park, Calif. Office<br><a data-mce-href=\"https://usgs.gov\" href=\"https://usgs.gov\" target=\"_blank\" rel=\"noopener\">U.S. Geological Survey</a><br>345 Middlefield Road, MS 977<br>Menlo Park, CA 94025</p>","tableOfContents":"<ul><li>Preface&nbsp;&nbsp;</li><li>Acknowledgments&nbsp;&nbsp;</li><li>Abstract&nbsp;&nbsp;</li><li>Introduction&nbsp;&nbsp;</li><li>Description of Tuolumne Meadows&nbsp;&nbsp;</li><li>Methods&nbsp;&nbsp;</li><li>Results&nbsp;&nbsp;</li><li>Discussion&nbsp;&nbsp;</li><li>Conclusion&nbsp;&nbsp;</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"publishedDate":"2021-06-14","noUsgsAuthors":false,"publicationDate":"2021-06-14","publicationStatus":"PW","contributors":{"authors":[{"text":"DeLong, Stephen B. 0000-0002-0945-2172 sdelong@usgs.gov","orcid":"https://orcid.org/0000-0002-0945-2172","contributorId":5240,"corporation":false,"usgs":true,"family":"DeLong","given":"Stephen","email":"sdelong@usgs.gov","middleInitial":"B.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":817611,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Pickering, Alexandra J. 0000-0002-1281-6117 apickering@usgs.gov","orcid":"https://orcid.org/0000-0002-1281-6117","contributorId":5990,"corporation":false,"usgs":true,"family":"Pickering","given":"Alexandra","email":"apickering@usgs.gov","middleInitial":"J.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":817612,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kuhn, Timothy","contributorId":260240,"corporation":false,"usgs":false,"family":"Kuhn","given":"Timothy","email":"","affiliations":[{"id":13367,"text":"National Parks Service","active":true,"usgs":false}],"preferred":true,"id":817613,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70229093,"text":"70229093 - 2021 - Hippopotamus movements structure the spatiotemporal dynamics of an active anthrax outbreak","interactions":[],"lastModifiedDate":"2022-02-28T14:26:25.256675","indexId":"70229093","displayToPublicDate":"2021-06-14T08:13:42","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Hippopotamus movements structure the spatiotemporal dynamics of an active anthrax outbreak","docAbstract":"<p><span>Globally, anthrax outbreaks pose a serious threat to people, livestock, and wildlife. Furthermore, environmental change can exacerbate these outbreak dynamics by altering the host–pathogen relationship. However, little is known about how the quantitative spatial dynamics of host movement and environmental change may affect the spread of&nbsp;</span><i>Bacillus anthracis</i><span>, the causative agent of anthrax. Here, we use real-time observations and high-resolution tracking data from a population of common hippopotamus (</span><i>Hippopotamus amphibius</i><span>) in Tanzania to explore the relationship between river hydrology,&nbsp;</span><i>H.&nbsp;amphibius</i><span>&nbsp;movement, and the spatiotemporal dynamics of an active anthrax outbreak. We found that extreme river drying, a consequence of anthropogenic disturbances to our study river, indirectly facilitated the spread of&nbsp;</span><i>B.&nbsp;anthracis</i><span>&nbsp;by modulating&nbsp;</span><i>H.&nbsp;amphibius</i><span>&nbsp;movements. Our findings reveal that anthrax spread upstream in the Great Ruaha River (~3.5&nbsp;km over a 9-day period), which followed the movement patterns of infected&nbsp;</span><i>H.&nbsp;amphibius</i><span>, who moved upstream as the river dried in search of remaining aquatic refugia. These upstream movements can result in large aggregations of&nbsp;</span><i>H.&nbsp;amphibius</i><span>. However, despite these aggregations, the density of&nbsp;</span><i>H.&nbsp;amphibius</i><span>&nbsp;in river pools did not influence the number of&nbsp;</span><i>B.&nbsp;anthracis</i><span>-induced mortalities. Moreover, infection by&nbsp;</span><i>B.&nbsp;anthracis</i><span>&nbsp;did not appear to influence&nbsp;</span><i>H.&nbsp;amphibius</i><span>&nbsp;movement behaviors, which suggests that infected individuals can vector&nbsp;</span><i>B.&nbsp;anthracis</i><span>&nbsp;over large distances right up until their death. Finally, we show that contact rates between&nbsp;</span><i>H.&nbsp;amphibius-</i><span>&nbsp;and&nbsp;</span><i>B.&nbsp;anthracis-</i><span>infected river pools are highly variable and the frequency and duration of contacts could potentially increase the probability of mortality. While difficult to obtain, the quantitative insights that we gathered during a real-time anthrax outbreak are critical to better understand, predict, and manage future outbreaks.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.3540","usgsCitation":"Stears, K., Schmitt, M.H., Turner, W.C., McCauley, D., Muse, E.A., Kiwango, H., Matheyo, D., and Mutayoba, B.M., 2021, Hippopotamus movements structure the spatiotemporal dynamics of an active anthrax outbreak: Ecosphere, v. 12, no. 6, e03540, 14 p., https://doi.org/10.1002/ecs2.3540.","productDescription":"e03540, 14 p.","ipdsId":"IP-121950","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":451887,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecs2.3540","text":"Publisher Index Page"},{"id":396541,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Tanzania","otherGeospatial":"Ruaha National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              33.95874023437499,\n              -8.697784143504906\n            ],\n            [\n              34.87884521484374,\n              -8.697784143504906\n            ],\n            [\n              34.87884521484374,\n              -7.917793352627911\n            ],\n            [\n              33.95874023437499,\n              -7.917793352627911\n            ],\n            [\n              33.95874023437499,\n              -8.697784143504906\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"12","issue":"6","noUsgsAuthors":false,"publicationDate":"2021-06-14","publicationStatus":"PW","contributors":{"authors":[{"text":"Stears, Keenan","contributorId":287054,"corporation":false,"usgs":false,"family":"Stears","given":"Keenan","email":"","affiliations":[{"id":16936,"text":"University of California Santa Barbara","active":true,"usgs":false}],"preferred":false,"id":836456,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Schmitt, Melissa H.","contributorId":287055,"corporation":false,"usgs":false,"family":"Schmitt","given":"Melissa","email":"","middleInitial":"H.","affiliations":[{"id":16936,"text":"University of California Santa Barbara","active":true,"usgs":false}],"preferred":false,"id":836457,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Turner, Wendy Christine 0000-0002-0302-1646","orcid":"https://orcid.org/0000-0002-0302-1646","contributorId":287053,"corporation":false,"usgs":true,"family":"Turner","given":"Wendy","email":"","middleInitial":"Christine","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":836455,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McCauley, Douglas J.","contributorId":287056,"corporation":false,"usgs":false,"family":"McCauley","given":"Douglas J.","affiliations":[{"id":16936,"text":"University of California Santa Barbara","active":true,"usgs":false}],"preferred":false,"id":836458,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Muse, Epaphras A.","contributorId":287060,"corporation":false,"usgs":false,"family":"Muse","given":"Epaphras","email":"","middleInitial":"A.","affiliations":[{"id":61455,"text":"Tanzania National Parks","active":true,"usgs":false}],"preferred":false,"id":836459,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kiwango, Halima","contributorId":287062,"corporation":false,"usgs":false,"family":"Kiwango","given":"Halima","email":"","affiliations":[{"id":61455,"text":"Tanzania National Parks","active":true,"usgs":false}],"preferred":false,"id":836460,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Matheyo, Daniel","contributorId":287063,"corporation":false,"usgs":false,"family":"Matheyo","given":"Daniel","email":"","affiliations":[{"id":61455,"text":"Tanzania National Parks","active":true,"usgs":false}],"preferred":false,"id":836461,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Mutayoba, Benezeth M.","contributorId":287064,"corporation":false,"usgs":false,"family":"Mutayoba","given":"Benezeth","email":"","middleInitial":"M.","affiliations":[{"id":61457,"text":"Sokoine University of Agriculture","active":true,"usgs":false}],"preferred":false,"id":836462,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70224310,"text":"70224310 - 2021 - Spatial Gaussian processes improve multi-species occupancy models when range boundaries are uncertain and nonoverlapping","interactions":[],"lastModifiedDate":"2021-09-21T12:39:44.167853","indexId":"70224310","displayToPublicDate":"2021-06-14T07:37:44","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Spatial Gaussian processes improve multi-species occupancy models when range boundaries are uncertain and nonoverlapping","docAbstract":"<ol class=\"\"><li>Species distribution models enable practitioners to analyze large datasets of encounter records and make predictions about species occurrence at unsurveyed locations. In omnibus surveys that record data on multiple species simultaneously, species ranges are often nonoverlapping and misaligned with the administrative unit defining the spatial domain of interest (e.g., a state or province). Consequently, some species display differentially restricted extents within a study area. Assuming hard boundaries based on expert opinion or published range maps to restrict species occurrence predictions implies a false sense of certainty in model-based inferences.</li><li>We propose a multi-species occupancy model with a spatial Gaussian process on site-specific effects for each species as a model-based solution. Specifying informative Bayesian hyperpriors on the spatial hyperparameters encapsulates broad-scale correlation among site occupancy probabilities for each species. We fit this model to acoustic detection/nondetection data collected with autonomous recording units during summer of 2016–2019 throughout Oregon and Washington, USA, on 15 bat species.</li><li>We found vast improvements in spatial predictions of spotted bat (<i>Euderma maculatum</i>), canyon bat (<i>Parastrellus hesperus</i>), and Brazilian free-tailed bat (<i>Tadarida brasiliensis</i>) when the available environmental predictors were insufficient for characterizing their restricted ranges within the region.</li><li>In contrast, widespread species (<i>Lasionycteris noctivagans</i>,<span>&nbsp;</span><i>Myotis californicus</i>,<span>&nbsp;</span><i>Myotis evotis</i>,<span>&nbsp;</span><i>Myotis volans</i>) were appropriately modeled using only environmental predictors, such as percentage forest cover and cliff and canyon cover.</li><li>Utilizing spatial Gaussian processes within a community or multi-species model incorporates uncertainty in range boundaries and allows for simultaneous predictions for the entire faunal assemblage even if species have nonoverlapping or restricted ranges within a spatial domain of interest. Such modeling improvements are essential if species distribution models are to accurately inform monitoring, species recovery plans, and other conservation efforts.</li></ol>","language":"English","publisher":"Wiley","doi":"10.1002/ece3.7629","usgsCitation":"Wright, W., Irvine, K.M., Rodhouse, T., and Litt, A., 2021, Spatial Gaussian processes improve multi-species occupancy models when range boundaries are uncertain and nonoverlapping: Ecology and Evolution, v. 11, no. 13, p. 8516-8527, https://doi.org/10.1002/ece3.7629.","productDescription":"12 p.","startPage":"8516","endPage":"8527","ipdsId":"IP-120600","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":451896,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.7629","text":"Publisher Index Page"},{"id":389534,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"11","issue":"13","noUsgsAuthors":false,"publicationDate":"2021-06-14","publicationStatus":"PW","contributors":{"authors":[{"text":"Wright, Wilson","contributorId":265899,"corporation":false,"usgs":false,"family":"Wright","given":"Wilson","affiliations":[{"id":36555,"text":"Montana State University","active":true,"usgs":false}],"preferred":false,"id":823684,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Irvine, Kathryn M. 0000-0002-6426-940X kirvine@usgs.gov","orcid":"https://orcid.org/0000-0002-6426-940X","contributorId":2218,"corporation":false,"usgs":true,"family":"Irvine","given":"Kathryn","email":"kirvine@usgs.gov","middleInitial":"M.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":823685,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rodhouse, Tom","contributorId":265903,"corporation":false,"usgs":false,"family":"Rodhouse","given":"Tom","affiliations":[{"id":36189,"text":"National Park Service","active":true,"usgs":false}],"preferred":false,"id":823686,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Litt, Andrea R.","contributorId":22226,"corporation":false,"usgs":true,"family":"Litt","given":"Andrea R.","affiliations":[],"preferred":false,"id":823687,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70226150,"text":"70226150 - 2021 - Advancing estuarine ecological forecasts: Seasonal hypoxia in Chesapeake Bay","interactions":[],"lastModifiedDate":"2021-11-15T12:25:59.286872","indexId":"70226150","displayToPublicDate":"2021-06-14T06:23:04","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1450,"text":"Ecological Applications","active":true,"publicationSubtype":{"id":10}},"title":"Advancing estuarine ecological forecasts: Seasonal hypoxia in Chesapeake Bay","docAbstract":"<div class=\"abstract-group\"><div class=\"article-section__content en main\"><p>Ecological forecasts are quantitative tools that can guide ecosystem management. The coemergence of extensive environmental monitoring and quantitative frameworks allows for widespread development and continued improvement of ecological forecasting systems. We use a relatively simple estuarine hypoxia model to demonstrate advances in addressing some of the most critical challenges and opportunities of contemporary ecological forecasting, including predictive accuracy, uncertainty characterization, and management relevance. We explore the impacts of different combinations of forecast metrics, drivers, and driver time windows on predictive performance. We also incorporate multiple sets of state-variable observations from different sources and separately quantify model prediction error and measurement uncertainty through a flexible Bayesian hierarchical framework. Results illustrate the benefits of (1) adopting forecast metrics and drivers that strike an optimal balance between predictability and relevance to management, (2) incorporating multiple data sources in the calibration data set to separate and propagate different sources of uncertainty, and (3) using the model in scenario mode to probabilistically evaluate the effects of alternative management decisions on future ecosystem state. In the Chesapeake Bay, the subject of this case study, we find that average summer or total annual hypoxia metrics are more predictable than monthly metrics and that measurement error represents an important source of uncertainty. Application of the model in scenario mode suggests that absent watershed management actions over the past decades, long-term average hypoxia would have increased by 7% compared to 1985. Conversely, the model projects that if management goals currently in place to restore the Bay are met, long-term average hypoxia would eventually decrease by 32% with respect to the mid-1980s.</p></div></div>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/eap.2384","usgsCitation":"Scavia, D., Bertani, I., Testa, J.M., Bever, A.J., Blomquist, J.D., Friedrichs, M.A., Linker, L.C., Michael, B., Murphy, R., and Shenk, G.W., 2021, Advancing estuarine ecological forecasts: Seasonal hypoxia in Chesapeake Bay: Ecological Applications, v. 31, no. 6, e02384, 19 p., https://doi.org/10.1002/eap.2384.","productDescription":"e02384, 19 p.","ipdsId":"IP-126252","costCenters":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true}],"links":[{"id":451901,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1002/eap.2384","text":"External Repository"},{"id":391676,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","otherGeospatial":"Chesapeake Bay","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -77.2998046875,\n              36.58024660149866\n            ],\n            [\n              -75.322265625,\n              36.58024660149866\n            ],\n            [\n              -75.322265625,\n              39.774769485295465\n            ],\n            [\n              -77.2998046875,\n              39.774769485295465\n            ],\n            [\n              -77.2998046875,\n              36.58024660149866\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"31","issue":"6","noUsgsAuthors":false,"publicationDate":"2021-07-21","publicationStatus":"PW","contributors":{"authors":[{"text":"Scavia, Donald","contributorId":200340,"corporation":false,"usgs":false,"family":"Scavia","given":"Donald","email":"","affiliations":[{"id":33091,"text":"University of Michigan, Ann Arbor, Michigan","active":true,"usgs":false}],"preferred":false,"id":826653,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bertani, Isabella","contributorId":194574,"corporation":false,"usgs":false,"family":"Bertani","given":"Isabella","email":"","affiliations":[{"id":33091,"text":"University of Michigan, Ann Arbor, Michigan","active":true,"usgs":false}],"preferred":false,"id":826654,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Testa, Jeremy M.","contributorId":244524,"corporation":false,"usgs":false,"family":"Testa","given":"Jeremy","email":"","middleInitial":"M.","affiliations":[{"id":37215,"text":"University of Maryland Center for Environmental Science","active":true,"usgs":false}],"preferred":false,"id":826662,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bever, Aaron J.","contributorId":173009,"corporation":false,"usgs":false,"family":"Bever","given":"Aaron","email":"","middleInitial":"J.","affiliations":[{"id":27140,"text":"Delta Modeling Associates, Inc.","active":true,"usgs":false}],"preferred":false,"id":826655,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Blomquist, Joel D. 0000-0002-0140-6534","orcid":"https://orcid.org/0000-0002-0140-6534","contributorId":215461,"corporation":false,"usgs":true,"family":"Blomquist","given":"Joel","middleInitial":"D.","affiliations":[{"id":374,"text":"Maryland Water Science Center","active":true,"usgs":true}],"preferred":true,"id":826656,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Friedrichs, Marjorie A. M. 0000-0003-2828-7595","orcid":"https://orcid.org/0000-0003-2828-7595","contributorId":222588,"corporation":false,"usgs":false,"family":"Friedrichs","given":"Marjorie","email":"","middleInitial":"A. M.","affiliations":[{"id":40564,"text":"Virginia Institute of Marine Science, William & Mary","active":true,"usgs":false}],"preferred":false,"id":826657,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Linker, Lewis C. 0000-0002-3456-3659","orcid":"https://orcid.org/0000-0002-3456-3659","contributorId":252964,"corporation":false,"usgs":false,"family":"Linker","given":"Lewis","email":"","middleInitial":"C.","affiliations":[{"id":6914,"text":"U.S. Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":826658,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Michael, Bruce","contributorId":268786,"corporation":false,"usgs":false,"family":"Michael","given":"Bruce","email":"","affiliations":[{"id":55661,"text":"Maryland Dept of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":826659,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Murphy, Rebecca 0000-0003-3391-1823","orcid":"https://orcid.org/0000-0003-3391-1823","contributorId":199777,"corporation":false,"usgs":false,"family":"Murphy","given":"Rebecca","email":"","affiliations":[{"id":37215,"text":"University of Maryland Center for Environmental Science","active":true,"usgs":false}],"preferred":true,"id":826660,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Shenk, Gary W. 0000-0001-6451-2513","orcid":"https://orcid.org/0000-0001-6451-2513","contributorId":225440,"corporation":false,"usgs":true,"family":"Shenk","given":"Gary","email":"","middleInitial":"W.","affiliations":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true}],"preferred":true,"id":826661,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70221341,"text":"sir20215045 - 2021 - Effects of climate and land-use change on thermal springs recharge—A system-based coupled surface-water and groundwater-flow model for Hot Springs National Park, Arkansas","interactions":[],"lastModifiedDate":"2021-06-14T12:24:43.182902","indexId":"sir20215045","displayToPublicDate":"2021-06-14T05:49:20","publicationYear":"2021","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-5045","displayTitle":"Effects of Climate and Land-Use Change on Thermal Springs Recharge—A System-Based Coupled Surface-Water and Groundwater-Flow Model for Hot Springs National Park, Arkansas","title":"Effects of climate and land-use change on thermal springs recharge—A system-based coupled surface-water and groundwater-flow model for Hot Springs National Park, Arkansas","docAbstract":"<p>A three-dimensional hydrogeologic framework of the Hot Springs anticlinorium beneath Hot Springs National Park, Arkansas, was constructed to represent the complex hydrogeology of the park and surrounding areas to depths exceeding 9,000 feet below ground surface. The framework, composed of 6 rock formations and 1 vertical fault emplaced beneath the thermal springs, was discretized into 19 layers, 429 rows, and 576 columns and incorporated into a 3-dimensional steady-state groundwater-flow model constructed in MODFLOW-2005. Historical daily mean thermal spring flows were simulated for one stress period of approximately 34 years (1980–2014), chosen to represent the period of record for historical climate data used in the quantification of the boundary conditions. The groundwater-flow model was manually calibrated to historical daily mean thermal spring flows of 88,000 cubic feet per day observed over a 12-year period of record (1990–1995 and 1998–2005) at the thermal springs collection system. Calibration was achieved by calculating starting heads and general head boundary conditions from the Bernoulli equation and then adjusting the horizontal and vertical hydraulic conductivities of the rock formations and vertical fault and the hydraulic conductance of head-dependent flux boundaries. The groundwater-flow model was coupled to a surface-water model developed in the Precipitation-Runoff Modeling System (PRMS) by using PRMS-simulated gravity drainage as a specified flux recharge boundary condition in the groundwater-flow model. Together, the coupled models were used to (1) locate the areas of groundwater recharge to the thermal springs in the discretized hydrogeologic framework by using forward and reverse particle-tracking capabilities of MODPATH, (2) simulate the effects of variable recharge rates on the spring flows at the thermal springs, and (3) assess possible effects of climate and land-use change on the long-term variability of spring flows at the thermal springs.</p><p>Forward and backward particle-tracking maps indicated that the most prevalent areas of recharge in the discretized hydrogeologic framework used in this study were within about 0.6–0.9 mile of the thermal springs. Forward particle tracking indicated a recharge area southwest of the thermal springs that corresponded to a location where the predominant lithologies are the Arkansas Novaculite, Hot Springs Sandstone, and Bigfork Chert. Backward particle tracking indicated a second localized area of recharge to the northeast of the thermal springs that corresponded to a location where the dominant lithology is the Bigfork Chert. The groundwater-flow model indicated that the most probable recharge formations are the Arkansas Novaculite, Bigfork Chert, and Hot Springs Sandstone.</p><p>The simulated effects of climate and land-use changes on the variability of the spring-flow rates at the thermal springs generally resulted in reductions of thermal spring flow attributed to urban development and more extreme climates characterized by elevated mean surface air temperatures. The groundwater-flow model predicted a linear relation between the thermal spring discharge and the cumulative recharge volume applied to the hydrogeologic framework, and the positive slope of the predicted relation between recharge and simulated thermal spring flow indicates that more extreme precipitation events that supply more recharge may in fact increase the thermal spring-flow rates.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20215045","collaboration":"Prepared in cooperation with the National Park Service","usgsCitation":"Hart, R.M., Ikard, S.J., Hays, P.D., and Clark, B.R., 2021, Effects of climate and land-use change on thermal springs recharge—A system-based coupled surface-water and groundwater-flow model for Hot Springs National Park, Arkansas: U.S. Geological Survey Scientific Investigations Report 2021–5045, 38 p., https://doi.org/10.3133/sir20215045.","productDescription":"Report: viii, 38 p.; Data Release","numberOfPages":"50","onlineOnly":"Y","ipdsId":"IP-091576","costCenters":[{"id":369,"text":"Louisiana Water Science Center","active":true,"usgs":true},{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true},{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true},{"id":38131,"text":"WMA - Office of Planning and Programming","active":true,"usgs":true}],"links":[{"id":386401,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2021/5045/coverthb.jpg"},{"id":386402,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2021/5045/sir20215045.pdf","text":"Report","size":"43.3 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2021–5045"},{"id":386403,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9SBJVVL","text":"USGS data release","linkHelpText":"Model inputs and outputs for simulating and predicting the effects of climate and land-use changes on thermal springs recharge—A system-based coupled surface-water and groundwater-flow model for Hot Springs National Park, Arkansas"},{"id":386404,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2021/5045/images"}],"country":"United States","state":"Arkansas","otherGeospatial":"Hot Springs National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -93.1475830078125,\n              34.487881874939866\n            ],\n            [\n              -92.96012878417969,\n              34.487881874939866\n            ],\n            [\n              -92.96012878417969,\n              34.57273337081573\n            ],\n            [\n              -93.1475830078125,\n              34.57273337081573\n            ],\n            [\n              -93.1475830078125,\n              34.487881874939866\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a data-mce-href=\"mailto:gs-w-lmg_center_director@usgs.gov\" href=\"mailto:gs-w-lmg_center_director@usgs.gov\">Director</a>, <a data-mce-href=\"https://www.usgs.gov/centers/lmg-water/\" href=\"https://www.usgs.gov/centers/lmg-water/\">Lower Mississippi-Gulf Water Science Center</a><br>U.S. Geological Survey<br>640 Grassmere Park, Suite 100<br>Nashville, TN 37211<br></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Delineation of the Recharge Area</li><li>PRMS Model Development</li><li>MODFLOW Groundwater-Flow Model Development</li><li>MODFLOW Model Simulations</li><li>Model Assumptions and Limitations</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2021-06-14","noUsgsAuthors":false,"publicationDate":"2021-06-14","publicationStatus":"PW","contributors":{"authors":[{"text":"Hart, Rheannon M. 0000-0003-4657-5945 rmhart@usgs.gov","orcid":"https://orcid.org/0000-0003-4657-5945","contributorId":5516,"corporation":false,"usgs":true,"family":"Hart","given":"Rheannon","email":"rmhart@usgs.gov","middleInitial":"M.","affiliations":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true},{"id":129,"text":"Arkansas Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817373,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ikard, Scott J. 0000-0002-8304-4935","orcid":"https://orcid.org/0000-0002-8304-4935","contributorId":207285,"corporation":false,"usgs":true,"family":"Ikard","given":"Scott","email":"","middleInitial":"J.","affiliations":[{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true}],"preferred":true,"id":817374,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hays, Phillip D. 0000-0001-5491-9272 pdhays@usgs.gov","orcid":"https://orcid.org/0000-0001-5491-9272","contributorId":4145,"corporation":false,"usgs":true,"family":"Hays","given":"Phillip","email":"pdhays@usgs.gov","middleInitial":"D.","affiliations":[{"id":369,"text":"Louisiana Water Science Center","active":true,"usgs":true},{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true},{"id":129,"text":"Arkansas Water Science Center","active":true,"usgs":true}],"preferred":true,"id":817375,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Clark, Brian R. 0000-0001-6611-3807 brclark@usgs.gov","orcid":"https://orcid.org/0000-0001-6611-3807","contributorId":1502,"corporation":false,"usgs":true,"family":"Clark","given":"Brian","email":"brclark@usgs.gov","middleInitial":"R.","affiliations":[{"id":38131,"text":"WMA - Office of Planning and Programming","active":true,"usgs":true}],"preferred":true,"id":817376,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70221793,"text":"70221793 - 2021 - Identifying metabolic alterations associated with coral growth anomalies using 1H NMR metabolomics","interactions":[],"lastModifiedDate":"2021-08-03T16:32:38.248531","indexId":"70221793","displayToPublicDate":"2021-06-12T19:37:42","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1338,"text":"Coral Reefs","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Identifying metabolic alterations associated with coral growth anomalies using <sup>1</sup>H NMR metabolomics","title":"Identifying metabolic alterations associated with coral growth anomalies using 1H NMR metabolomics","docAbstract":"<p><span>Coral growth anomalies (GAs) are tumor-like protrusions that are detrimental to coral health, affecting both the coral skeleton and soft tissues. These lesions are increasingly found throughout the tropics and are commonly associated with high human population density, yet little is known about the molecular pathology of the disease. Here, we investigate the metabolic impacts of GAs through&nbsp;</span><sup>1</sup><span>H nuclear magnetic resonance (NMR) metabolomics in&nbsp;</span><i>Porites compressa</i><span>&nbsp;tissues from a site of high disease prevalence (Coconut Island, Hawaii). We putatively identified 18 metabolites (8.1% of total annotated features) through complementary&nbsp;</span><sup>1</sup><span>H and&nbsp;</span><sup>1</sup><span>H–</span><sup>13</sup><span>C heteronuclear single quantum correlation NMR data that increase confidence in pathway analyses and may bolster future coral metabolite annotation efforts. Extract yield was elevated in both GA and unaffected (normal tissue from a diseased colony) compared to reference (normal tissue from GA-free colony) samples, potentially indicating elevated metabolic activity in GA-impacted colonies. Relatively high variation in metabolomic profiles among coral samples of the same treatment (i.e., inter-colony variation) confounded data interpretation, however, analyses of paired GA and unaffected samples identified 73 features that differed between these respective metabolome types. These features were largely annotated as unknowns, but 1-methylnicotinamide and trigonelline were found to be elevated in GA samples, while betaine, glycine, and histamine were lower in GA samples. Pathway analyses indicate decreased choline oxidation in GA samples, making this a pathway of interest for future targeted studies. Collectively, our results provide unique insights into GA pathophysiology by showing these lesions alter both the absolute and relative metabolism of affected colonies and by identifying features (metabolites and unknowns) and metabolic pathways of interest in GA pathophysiology going forward.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s00338-021-02125-7","usgsCitation":"Andersson, E.R., Day, R.D., Work, T.M., Anderson, P.E., Woodley, C.M., and Schock, T.B., 2021, Identifying metabolic alterations associated with coral growth anomalies using 1H NMR metabolomics: Coral Reefs, v. 40, p. 1195-1209, https://doi.org/10.1007/s00338-021-02125-7.","productDescription":"15 p.","startPage":"1195","endPage":"1209","ipdsId":"IP-126580","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":467239,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1007/s00338-021-02125-7","text":"External Repository"},{"id":386978,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"40","noUsgsAuthors":false,"publicationDate":"2021-06-12","publicationStatus":"PW","contributors":{"authors":[{"text":"Andersson, Erik R.","contributorId":260786,"corporation":false,"usgs":false,"family":"Andersson","given":"Erik","email":"","middleInitial":"R.","affiliations":[{"id":35839,"text":"College of Charleston","active":true,"usgs":false}],"preferred":false,"id":818739,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Day, Rusty D.","contributorId":260787,"corporation":false,"usgs":false,"family":"Day","given":"Rusty","email":"","middleInitial":"D.","affiliations":[{"id":35839,"text":"College of Charleston","active":true,"usgs":false}],"preferred":false,"id":818740,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Work, Thierry M. 0000-0002-4426-9090 thierry_work@usgs.gov","orcid":"https://orcid.org/0000-0002-4426-9090","contributorId":1187,"corporation":false,"usgs":true,"family":"Work","given":"Thierry","email":"thierry_work@usgs.gov","middleInitial":"M.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":818741,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Anderson, Paul E.","contributorId":260788,"corporation":false,"usgs":false,"family":"Anderson","given":"Paul","email":"","middleInitial":"E.","affiliations":[{"id":35839,"text":"College of Charleston","active":true,"usgs":false}],"preferred":false,"id":818742,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Woodley, Cheryl M.","contributorId":260789,"corporation":false,"usgs":false,"family":"Woodley","given":"Cheryl","email":"","middleInitial":"M.","affiliations":[{"id":36803,"text":"NOAA","active":true,"usgs":false}],"preferred":false,"id":818743,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Schock, Tracey B.","contributorId":260790,"corporation":false,"usgs":false,"family":"Schock","given":"Tracey","email":"","middleInitial":"B.","affiliations":[{"id":47720,"text":"NIST","active":true,"usgs":false}],"preferred":false,"id":818744,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70222099,"text":"70222099 - 2021 - Integrating thermal infrared stream temperature imagery and spatial stream network models to understand natural spatial thermal variability in streams","interactions":[],"lastModifiedDate":"2021-07-20T12:18:00.475837","indexId":"70222099","displayToPublicDate":"2021-06-12T07:15:25","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2476,"text":"Journal of Thermal Biology","active":true,"publicationSubtype":{"id":10}},"title":"Integrating thermal infrared stream temperature imagery and spatial stream network models to understand natural spatial thermal variability in streams","docAbstract":"<div id=\"abstracts\" class=\"Abstracts u-font-serif\"><div id=\"abs0010\" class=\"abstract author\" lang=\"en\"><div id=\"abssec0010\"><p id=\"abspara0010\">Under a warmer future climate, thermal refuges could facilitate the persistence of species relying on cold-water habitat. Often these refuges are small and easily missed or smoothed out by averaging in models. Thermal infrared (TIR) imagery can provide empirical water surface temperatures that capture these features at a<span>&nbsp;</span>high spatial resolution<span>&nbsp;(&lt;1&nbsp;m) and over tens of kilometers. Our study examined how TIR data could be used along with spatial stream network (SSN) models to characterize&nbsp;thermal regimes&nbsp;spatially in the Middle Fork John Day (MFJD) River mainstem (Oregon, USA). We characterized thermal variation in seven TIR longitudinal temperature profiles along the MFJD mainstem and compared them with SSN model predictions of stream temperature (for the same time periods as the TIR profiles). TIR profiles identified reaches of the MFJD mainstem with consistently cooler temperatures across years that were not consistently captured by the SSN prediction models. SSN predictions along the mainstem identified ~80% of the 1-km reach scale temperature warming or cooling trends observed in the TIR profiles. We assessed whether landscape features (e.g., tributary junctions, valley confinement, geomorphic reach classifications) could explain the fine-scale thermal heterogeneity in the TIR profiles (after accounting for the reach-scale temperature variability predicted by the SSN model) by fitting SSN models using the TIR profile observation points. Only the distance to the nearest upstream tributary was identified as a statistically significant landscape feature for explaining some of the thermal variability in the TIR profile data. When combined, TIR data and SSN models provide a data-rich evaluation of stream temperature captured in TIR imagery and a spatially extensive prediction of the network thermal diversity from the outlet to the&nbsp;headwaters.</span></p></div></div></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.jtherbio.2021.103028","usgsCitation":"Fuller, M.R., Ebersole, J.L., Detenbeck, N., Labisoa, R., Leinenbach, P., and Torgersen, C.E., 2021, Integrating thermal infrared stream temperature imagery and spatial stream network models to understand natural spatial thermal variability in streams: Journal of Thermal Biology, v. 100, 103028, 19 p., https://doi.org/10.1016/j.jtherbio.2021.103028.","productDescription":"103028, 19 p.","ipdsId":"IP-128957","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"links":[{"id":436314,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9UQBZ2X","text":"USGS data release","linkHelpText":"Airborne thermal infrared remote sensing of summer water temperature in the Middle Fork John Day River (Oregon) in 1994-2003"},{"id":387293,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Oregon","otherGeospatial":"Middle Fork John Day River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -120.311279296875,\n              43.739352079154706\n            ],\n            [\n              -117.71850585937501,\n              43.739352079154706\n            ],\n            [\n              -117.71850585937501,\n              44.98034238084973\n            ],\n            [\n              -120.311279296875,\n              44.98034238084973\n            ],\n            [\n              -120.311279296875,\n              43.739352079154706\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"100","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Fuller, Matthew R.","contributorId":213261,"corporation":false,"usgs":false,"family":"Fuller","given":"Matthew","email":"","middleInitial":"R.","affiliations":[{"id":12643,"text":"Duke University","active":true,"usgs":false}],"preferred":false,"id":819513,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ebersole, Joseph L.","contributorId":146938,"corporation":false,"usgs":false,"family":"Ebersole","given":"Joseph","email":"","middleInitial":"L.","affiliations":[{"id":12657,"text":"EPA NEIC","active":true,"usgs":false}],"preferred":false,"id":819514,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Detenbeck, Naomi","contributorId":261219,"corporation":false,"usgs":false,"family":"Detenbeck","given":"Naomi","email":"","affiliations":[{"id":39312,"text":"U.S. EPA","active":true,"usgs":false}],"preferred":false,"id":819515,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Labisoa, Rochelle","contributorId":261221,"corporation":false,"usgs":false,"family":"Labisoa","given":"Rochelle","email":"","affiliations":[{"id":39312,"text":"U.S. EPA","active":true,"usgs":false}],"preferred":false,"id":819516,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Leinenbach, P.T.","contributorId":217976,"corporation":false,"usgs":false,"family":"Leinenbach","given":"P.T.","affiliations":[{"id":13529,"text":"US Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":819517,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Torgersen, Christian E. 0000-0001-8325-2737 ctorgersen@usgs.gov","orcid":"https://orcid.org/0000-0001-8325-2737","contributorId":146935,"corporation":false,"usgs":true,"family":"Torgersen","given":"Christian","email":"ctorgersen@usgs.gov","middleInitial":"E.","affiliations":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true},{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":true,"id":819518,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70222090,"text":"70222090 - 2021 - Recency of faulting and subsurface architecture of the San Diego Bay pull-apart basin, California, USA","interactions":[],"lastModifiedDate":"2021-07-19T23:18:37.411565","indexId":"70222090","displayToPublicDate":"2021-06-11T18:12:32","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5232,"text":"Frontiers in Earth Science","onlineIssn":"2296-6463","active":true,"publicationSubtype":{"id":10}},"title":"Recency of faulting and subsurface architecture of the San Diego Bay pull-apart basin, California, USA","docAbstract":"In southern California, plate boundary motion between the North American and Pacific plates is distributed across several sub-parallel fault systems. The offshore faults of the California Continental Borderland (CCB) are thought to accommodate ~10-15% of the total plate boundary motion, but the exact distribution of slip and the mechanics of slip partitioning remain uncertain. The Newport-Inglewood-Rose Canyon fault is the easternmost fault within the CCB whose southern segment splays out into a complex network of faults beneath San Diego Bay. A pull-apart basin model between the Rose Canyon and the offshore Descanso fault has been used to explain prominent fault orientations and subsidence beneath San Diego Bay; however this model does not account for faults in the southern portion of the bay or faulting east of the bay. To investigate the characteristics of faulting and stratigraphic architecture beneath San Diego Bay, we combined a suite of reprocessed legacy airgun multi-channel seismic profiles and high-resolution Chirp data, with age and lithology controls from geotechnical boreholes and shallow sub-surface vibracores. This combined dataset is used to create gridded horizon surfaces, fault maps, and perform a kinematic fault analysis. The structure beneath San Diego Bay is dominated by down-to-the-east motion on normal faults that can be separated into two distinct groups. The strikes of these two fault groups can be explained with a double pull-apart basin model for San Diego Bay. In our conceptual model, the western portion of San Diego Bay is controlled by a right-step between the Rose Canyon and Descanso faults, which matches both observations and predictions from laboratory models. The eastern portion of San Diego Bay appears to be controlled by an inferred step-over between the Rose Canyon and San Miguel-Vallecitos faults and displays distinct fault strike orientations, which kinematic analysis indicates should have a significant component of strike-slip partitioning that is not detectable in the seismic data. The potential of a Rose Canyon-San Miguel-Vallecitos fault connection would effectively cut the stepover distance in half and have important implications for the seismic hazard of the San Diego-Tijuana metropolitan area (population ~3 million people).","language":"English","publisher":"Frontiers Media","doi":"10.3389/feart.2021.641346","usgsCitation":"Singleton, D.M., Maloney, J.M., Brothers, D.S., Klotsko, S., Driscoll, N., and Rockwell, T.K., 2021, Recency of faulting and subsurface architecture of the San Diego Bay pull-apart basin, California, USA: Frontiers in Earth Science, v. 9, 641346, 25 p., https://doi.org/10.3389/feart.2021.641346.","productDescription":"641346, 25 p.","ipdsId":"IP-125700","costCenters":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":451910,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3389/feart.2021.641346","text":"Publisher Index Page"},{"id":436315,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P93Z2LYJ","text":"USGS data release","linkHelpText":"Reprocessed multichannel seismic-reflection (MCS) data from USGS field activity T-1-96-SC collected in San Diego Bay, California in 1996"},{"id":387256,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"San Diego Bay","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -117.34771728515625,\n              32.602361666817515\n            ],\n            [\n              -117.037353515625,\n              32.602361666817515\n            ],\n            [\n              -117.037353515625,\n              32.858825196463854\n            ],\n            [\n              -117.34771728515625,\n              32.858825196463854\n            ],\n            [\n              -117.34771728515625,\n              32.602361666817515\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"9","noUsgsAuthors":false,"publicationDate":"2021-06-11","publicationStatus":"PW","contributors":{"authors":[{"text":"Singleton, Drake Moore 0000-0001-5346-0623","orcid":"https://orcid.org/0000-0001-5346-0623","contributorId":261207,"corporation":false,"usgs":true,"family":"Singleton","given":"Drake","email":"","middleInitial":"Moore","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":819471,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Maloney, Jillian M. 0000-0001-8223-4676","orcid":"https://orcid.org/0000-0001-8223-4676","contributorId":261208,"corporation":false,"usgs":false,"family":"Maloney","given":"Jillian","email":"","middleInitial":"M.","affiliations":[{"id":6608,"text":"San Diego State University","active":true,"usgs":false}],"preferred":false,"id":819472,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Brothers, Daniel S. 0000-0001-7702-157X dbrothers@usgs.gov","orcid":"https://orcid.org/0000-0001-7702-157X","contributorId":167089,"corporation":false,"usgs":true,"family":"Brothers","given":"Daniel","email":"dbrothers@usgs.gov","middleInitial":"S.","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true},{"id":186,"text":"Coastal and Marine Geology Program","active":true,"usgs":true}],"preferred":true,"id":819473,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Klotsko, Shannon","contributorId":261209,"corporation":false,"usgs":false,"family":"Klotsko","given":"Shannon","affiliations":[{"id":52774,"text":"University of North Carolina - Wilmington","active":true,"usgs":false}],"preferred":false,"id":819474,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Driscoll, Neal W.","contributorId":261210,"corporation":false,"usgs":false,"family":"Driscoll","given":"Neal W.","affiliations":[{"id":38264,"text":"Scripps Institution of Oceanography","active":true,"usgs":false}],"preferred":false,"id":819475,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Rockwell, Thomas K.","contributorId":53290,"corporation":false,"usgs":true,"family":"Rockwell","given":"Thomas","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":819476,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70221913,"text":"70221913 - 2021 - Magnetotelluric sampling and geoelectric hazard estimation: Are national-scale surveys sufficient?","interactions":[],"lastModifiedDate":"2021-07-14T17:04:37.733359","indexId":"70221913","displayToPublicDate":"2021-06-11T11:59:22","publicationYear":"2021","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":8968,"text":"AGU Space Weather","active":true,"publicationSubtype":{"id":10}},"title":"Magnetotelluric sampling and geoelectric hazard estimation: Are national-scale surveys sufficient?","docAbstract":"<p><span>At present, the most reliable information for inferring storm-time ground electric fields along electrical transmission lines comes from coarsely sampled, national-scale magnetotelluric (MT) data sets, such as that provided by the EarthScope USArray program. An underlying assumption in the use of such data is that they adequately sample the spatial heterogeneity of the surface relationship between geomagnetic and geoelectric fields. Here, we assess the degree to which the density of MT data sampling affects geoelectric hazard assessments. For electrical transmission networks in each of four focus regions across the contiguous United States, we perform two parallel band-limited (10</span><sup>1</sup><span>–10</span><sup>3</sup><span>&nbsp;s) hazard analyses: one using only USArray-style (∼70-km station spacing) MT data, and one incorporating denser (≪70-km station spacing) MT data. We find that the use of USArray-style MT sampling alone provides a useful first-order estimate of integrated geoelectric fields along electrical transmission lines. However, we also find that the use of higher density MT data can in some areas lead to order-of-magnitude differences in line-averaged electric field estimates at the level of individual transmission lines and can also yield significant differences in subregional hazard patterns. As we demonstrate using variogram plots, these differences reflect short-spatial-scale variability in Earth conductivity, which in turn reflects regional lithotectonic structure and history. We also provide a cautionary example in the use of electrical conductivity models to predict dense MT data; although valuable for hazard applications, models may only be able to reproduce surface geoelectric fields as captured by the MT data from which they were derived.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2020SW002693","usgsCitation":"Murphy, B.S., Lucas, G., Love, J.J., Kelbert, A., Bedrosian, P.A., and Rigler, E.J., 2021, Magnetotelluric sampling and geoelectric hazard estimation: Are national-scale surveys sufficient?: AGU Space Weather, v. 19, no. 7, e2020SW002693, 24 p., https://doi.org/10.1029/2020SW002693.","productDescription":"e2020SW002693, 24 p.","ipdsId":"IP-128631","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":488915,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2020sw002693","text":"Publisher Index Page"},{"id":387180,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United  States","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -125.33203124999997,\n              39.70718665682654\n            ],\n            [\n              -120.93749999999997,\n              39.70718665682654\n            ],\n            [\n              -120.93749999999997,\n              46.37725420510028\n            ],\n            [\n              -125.33203124999997,\n              46.37725420510028\n            ],\n            [\n              -125.33203124999997,\n              39.70718665682654\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      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jlove@usgs.gov","orcid":"https://orcid.org/0000-0002-3324-0348","contributorId":760,"corporation":false,"usgs":true,"family":"Love","given":"Jeffrey","email":"jlove@usgs.gov","middleInitial":"J.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":819288,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kelbert, Anna 0000-0003-4395-398X akelbert@usgs.gov","orcid":"https://orcid.org/0000-0003-4395-398X","contributorId":184053,"corporation":false,"usgs":true,"family":"Kelbert","given":"Anna","email":"akelbert@usgs.gov","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":819289,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bedrosian, Paul A. 0000-0002-6786-1038 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Joshua 0000-0003-4850-3953 erigler@usgs.gov","orcid":"https://orcid.org/0000-0003-4850-3953","contributorId":4367,"corporation":false,"usgs":true,"family":"Rigler","given":"E.","email":"erigler@usgs.gov","middleInitial":"Joshua","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":819291,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
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