{"pageNumber":"201","pageRowStart":"5000","pageSize":"25","recordCount":185189,"records":[{"id":70251912,"text":"70251912 - 2024 - Summary of the discussions during 2023 SSA topical meeting on “Future Directions for Physics-Based Ground Motion Modeling”","interactions":[],"lastModifiedDate":"2026-03-25T16:02:49.42664","indexId":"70251912","displayToPublicDate":"2024-03-29T11:01:26","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3372,"text":"Seismological Research Letters","onlineIssn":"1938-2057","printIssn":"0895-0695","active":true,"publicationSubtype":{"id":10}},"title":"Summary of the discussions during 2023 SSA topical meeting on “Future Directions for Physics-Based Ground Motion Modeling”","docAbstract":"<p><span>The Seismological Society of America (SSA) topical conference, Future Directions for Physics‐Based Ground Motion Modeling, was held in Vancouver, Canada, on 10–13 October 2023, co‐sponsored by the Seismological Society of Japan and co‐chaired by Annemarie Baltay of the U.S. Geological Survey and Hiroshi Kawase of Kyoto University. This meeting brought together many researchers and practitioners interested in modeling, observing, and utilizing ground‐motion models (GMMs). Scientists gathered to discuss complex kinematic and dynamic rupture simulation approaches, empirical representations of the earthquake source, site and path effects, physical modeling of the recording site, challenges for model extrapolation, and overall prediction accuracy and simulation validation. The four‐day meeting included many posters as well as oral presentations, with each session followed by lively discussion sections, upon which we report here.</span></p>","language":"English","publisher":"Seismological Society of America","doi":"10.1785/0220240084","usgsCitation":"Kawase, H., and Baltay Sundstrom, A.S., 2024, Summary of the discussions during 2023 SSA topical meeting on “Future Directions for Physics-Based Ground Motion Modeling”: Seismological Research Letters, v. 95, no. 3, p. 2026-2030, https://doi.org/10.1785/0220240084.","productDescription":"5 p.","startPage":"2026","endPage":"2030","ipdsId":"IP-163467","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":501503,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"95","issue":"3","noUsgsAuthors":false,"publicationDate":"2024-03-29","publicationStatus":"PW","contributors":{"authors":[{"text":"Kawase, Hiroshi","contributorId":267868,"corporation":false,"usgs":false,"family":"Kawase","given":"Hiroshi","email":"","affiliations":[{"id":36662,"text":"Kyoto University","active":true,"usgs":false}],"preferred":false,"id":896049,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Baltay, Annemarie S. 0000-0002-6514-852X abaltay@usgs.gov","orcid":"https://orcid.org/0000-0002-6514-852X","contributorId":4932,"corporation":false,"usgs":true,"family":"Baltay","given":"Annemarie","email":"abaltay@usgs.gov","middleInitial":"S.","affiliations":[{"id":234,"text":"Earthquake Hazards Program","active":true,"usgs":true},{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":896050,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70252670,"text":"70252670 - 2024 - Post-wildfire debris flows","interactions":[],"lastModifiedDate":"2024-04-02T15:03:04.719071","indexId":"70252670","displayToPublicDate":"2024-03-29T10:00:07","publicationYear":"2024","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Post-wildfire debris flows","docAbstract":"<p><span>Post-wildfire debris flows pose severe hazards to communities and infrastructure near and within recently burned mountainous terrain. Intense heat of wildfires changes the runoff characteristics of a watershed by combusting the vegetative canopy, litter, and duff, introducing ash into the soil and creating water repellant soils. Following wildfire, rainfall on bare ground is less able to infiltrate into the fire-altered soils and overland flow is less&nbsp;impeded by vegetation. Rainfall runoff in recently burned areas can erode hillslopes owing to the removal of soil binding organic matter near the soil surface by fire. In channels, loose, dry-ravel deposits composed of sand and gravel are readily entrained by concentrated runoff in channels. Entrainment of soil on hillslopes and in channels bulks up the sediment concentration of the rainfall runoff to generate debris flows capable of transporting boulders and large woody debris. Post-wildfire debris flows can be triggered by rainfall conditions that would typically produce little runoff during unburned conditions. The primary rainfall trigger for post-wildfire debris flows is high intensity rainfall during short duration convective rainstorms or periods of high&nbsp;rainfall&nbsp;intensity embedded within a long-duration frontal storm. Numerous observations of debris flows triggered by storms lasting less than an hour following periods of little to no rainfall indicate that antecedent rainfall is not a requirement for initiation of post-wildfire debris flows. Post-wildfire debris-flow hazard assessment entails estimating probability and magnitude of debris flows in the burned area, estimating debris-flow runout and intensity, and defining rainfall intensity-duration thresholds for debris-flow initiation. In the United States, probability and magnitude is estimated using empirically derived models largely based on data collected in southern California. The models provide maps to identify watersheds and drainage paths where post-wildfire hazards are most pronounced. Rainfall intensity-duration thresholds can be incorporated into flood hazard forecasting tools. Currently, work is underway to identify how to best implement debris-flow runout models in burned areas with efficiency and accuracy. Post-wildfire debris flows have been a long-recognized process in the Transverse Ranges of southern California; however, climate change is driving more frequent wildfires to burn more mountainous terrain throughout the western United States and worldwide. As a result, post-wildfire debris flows are becoming a more common threat in areas where they were once infrequent. As the threat of post-wildfire debris flow expands into new areas, evaluating the hazard becomes challenging because the degree to which wildfire increases debris-flow susceptibility varies from region to region. This chapter summarizes the knowledge to date for evaluating post-wildfire debris-flow susceptibility and hazard assessment. We summarize the characteristics of wildfire burn severity, topography, underlying soil and geology, and rainfall conditions that contribute to making a watershed most likely to produce post-wildfire debris flows. Methods for hazard assessment in the United States and other countries are summarized. We highlight knowledge gaps for how post-wildfire debris-flow susceptibility varies throughout the western United States and worldwide and identify research needs to improve hazard assessment methods in different geographies.</span></p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Advances in Debris-flow Science and Practice","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Springer","doi":"10.1007/978-3-031-48691-3_11","usgsCitation":"Gartner, J., Kean, J.W., Rengers, F.K., McCoy, S., Oakley, N.S., and Sheridan, G.J., 2024, Post-wildfire debris flows, chap. <i>of</i> Advances in Debris-flow Science and Practice, p. 309-345, https://doi.org/10.1007/978-3-031-48691-3_11.","productDescription":"37 p.","startPage":"309","endPage":"345","ipdsId":"IP-144910","costCenters":[{"id":78686,"text":"Geologic Hazards Science Center - Seismology / Geomagnetism","active":true,"usgs":true}],"links":[{"id":427315,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationDate":"2024-03-29","publicationStatus":"PW","contributors":{"authors":[{"text":"Gartner, Joseph","contributorId":335250,"corporation":false,"usgs":false,"family":"Gartner","given":"Joseph","affiliations":[{"id":78476,"text":"BGC Engineering","active":true,"usgs":false}],"preferred":false,"id":897864,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kean, Jason W. 0000-0003-3089-0369 jwkean@usgs.gov","orcid":"https://orcid.org/0000-0003-3089-0369","contributorId":1654,"corporation":false,"usgs":true,"family":"Kean","given":"Jason","email":"jwkean@usgs.gov","middleInitial":"W.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":897865,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rengers, Francis K. 0000-0002-1825-0943 frengers@usgs.gov","orcid":"https://orcid.org/0000-0002-1825-0943","contributorId":150422,"corporation":false,"usgs":true,"family":"Rengers","given":"Francis","email":"frengers@usgs.gov","middleInitial":"K.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":897866,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McCoy, Scott W.","contributorId":267182,"corporation":false,"usgs":false,"family":"McCoy","given":"Scott W.","affiliations":[{"id":16686,"text":"University of Nevada, Reno","active":true,"usgs":false}],"preferred":false,"id":897867,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Oakley, Nina S.","contributorId":197885,"corporation":false,"usgs":false,"family":"Oakley","given":"Nina","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":897868,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Sheridan, Gary J.","contributorId":210293,"corporation":false,"usgs":false,"family":"Sheridan","given":"Gary","email":"","middleInitial":"J.","affiliations":[{"id":13336,"text":"University of Melbourne","active":true,"usgs":false}],"preferred":false,"id":897869,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70261888,"text":"70261888 - 2024 - Lahars: Origins, behavior and hazards","interactions":[],"lastModifiedDate":"2024-12-31T16:01:22.063764","indexId":"70261888","displayToPublicDate":"2024-03-29T09:58:59","publicationYear":"2024","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Lahars: Origins, behavior and hazards","docAbstract":"<p><span>Volcanic debris flows that originate at potentially active volcanoes are called lahars. Lahars are like debris flows in non-volcanic terrain but can most notably differ in origin and size. Primary lahars occur during eruptions and may have novel origins such as turbulent mixing of hot rock moving across ice- and snow-clad volcanoes and eruptions through crater lakes. Lahars range in volume to more than a cubic kilometer (10</span><sup>9</sup><span>&nbsp;m</span><sup>3</sup><span>), with the biggest ones caused by huge deep-seated flank collapses of water-saturated edifice rock. Because they can be so voluminous, can have high water contents, and commonly can be clay rich, these lahars can travel tens to even hundreds of kilometers. Long transport causes evolution of flow types from flood flow to hyperconcentrated flow to debris flow. Lahars capable of traveling far downstream are commonly sufficiently liquefied that they drape valley slopes and leave behind thin deposits as they pass downstream. Only in valley bottoms are lahars likely to emplace thick deposits, and even there the deposits are apt to be much thinner than peak flow depths. Flows with long transport change character with time and distance downstream. Deposits, especially those in valley bottoms, can accrete during intervals that represent a significant proportion of the time it takes the flow to pass (typically minutes). The combination of flows changing character and their progressive accretion imposes distinctive characteristics on their deposits such as normal and inverse grading. Historically, lahars have caused thousands of fatalities and destroyed entire towns. Perhaps the most disastrous known lahar occurred in 1985 at Nevado del Ruiz in Colombia and killed more than 23,000 people. Since that disaster, an increasing awareness of lahar hazards has led to efforts to mitigate them. In recent decades, improved land-use decisions, monitoring and communication have improved hazard responses and saved many lives. Lahar hazard maps and development of lahar inundation models have helped planners and people at risk to better understand the nature of the risk owing to lahars.</span></p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Advances in debris-flow science and practice","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Springer","doi":"10.1007/978-3-031-48691-3_12","usgsCitation":"Vallance, J.W., 2024, Lahars: Origins, behavior and hazards, chap. <i>of</i> Advances in debris-flow science and practice, p. 347-381, https://doi.org/10.1007/978-3-031-48691-3_12.","productDescription":"35 p.","startPage":"347","endPage":"381","ipdsId":"IP-149909","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":465567,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationDate":"2024-03-29","publicationStatus":"PW","contributors":{"editors":[{"text":"Jakob, Matthias","contributorId":82179,"corporation":false,"usgs":true,"family":"Jakob","given":"Matthias","email":"","affiliations":[],"preferred":false,"id":922171,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"McDougall, Scott","contributorId":194908,"corporation":false,"usgs":false,"family":"McDougall","given":"Scott","email":"","affiliations":[],"preferred":false,"id":922172,"contributorType":{"id":2,"text":"Editors"},"rank":2},{"text":"Santi, Paul","contributorId":347682,"corporation":false,"usgs":false,"family":"Santi","given":"Paul","affiliations":[],"preferred":false,"id":922173,"contributorType":{"id":2,"text":"Editors"},"rank":3}],"authors":[{"text":"Vallance, James W. 0000-0002-3083-5469 jvallance@usgs.gov","orcid":"https://orcid.org/0000-0002-3083-5469","contributorId":547,"corporation":false,"usgs":true,"family":"Vallance","given":"James","email":"jvallance@usgs.gov","middleInitial":"W.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":922161,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70252776,"text":"70252776 - 2024 - How diverse is the toolbox?  A review of management actions to conserve or restore coregonines","interactions":[],"lastModifiedDate":"2024-04-05T14:26:00.205215","indexId":"70252776","displayToPublicDate":"2024-03-29T09:21:21","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":17451,"text":"International Journal of Limnology","active":true,"publicationSubtype":{"id":10}},"title":"How diverse is the toolbox?  A review of management actions to conserve or restore coregonines","docAbstract":"<p><span>Over the past centuries, coregonines have been exposed to a range of stressors that have led to extinctions, extirpations, and speciation reversals. Given that some populations remain at risk and fishery managers have begun restoring coregonines where they have been extirpated, we reviewed the primary and gray literature to describe the diversity of coregonine restoration or conservation actions that have been previously used. Although stocking of hatchery-reared fish has been commonly used for supplementing existing coregonine fisheries, we considered stocking efforts only with specifically conservation or restoration goals. Likewise, conservation-driven efforts of translocation were not widespread, except in the United Kingdom for the creation of refuge populations to supplement the distribution of declining stocks. Habitat restoration efforts have occurred more broadly and have included improving spawning habitat, connectivity, or nutrient concentrations. Although harvest regulations are commonly used to regulate coregonine fisheries, we found fewer examples of the creation of protected areas or outright closures. Finally, interactions with invasive species can be a considerable stressor, yet we found relatively few examples of invasive species control undertaken for the direct benefit of coregonines. In conclusion, our review of the literature and prior Coregonid symposia revealed relatively limited direct emphasis on coregonine conservation or restoration relative to more traditional fishery approaches (</span><i>e.g.</i><span>, supplementation of fisheries, stock assessment) or studying life history and genetics. Ideally, by providing this broad review of conservation and restoration strategies, future management efforts will benefit from learning about a greater diversity of potential actions that could be locally applied.</span></p>","language":"English","publisher":"EDP Sciences","doi":"10.1051/limn/2024002","usgsCitation":"Bunnell, D., Anneville, O., Baer, J., Bean, C., Kahlilainen, K., Sandstrom, A., Selz, O., Vonlanthen, P., Wanzenbock, J., and Weidel, B., 2024, How diverse is the toolbox?  A review of management actions to conserve or restore coregonines: International Journal of Limnology, v. 60, 5, 16 p., https://doi.org/10.1051/limn/2024002.","productDescription":"5, 16 p.","ipdsId":"IP-157646","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"links":[{"id":440017,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1051/limn/2024002","text":"Publisher Index Page"},{"id":427512,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"60","noUsgsAuthors":false,"publicationDate":"2024-03-29","publicationStatus":"PW","contributors":{"authors":[{"text":"Bunnell, David 0000-0003-3521-7747","orcid":"https://orcid.org/0000-0003-3521-7747","contributorId":217344,"corporation":false,"usgs":true,"family":"Bunnell","given":"David","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":898186,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Anneville, Orlane","contributorId":147752,"corporation":false,"usgs":false,"family":"Anneville","given":"Orlane","affiliations":[{"id":16922,"text":"INRA UMR CARRTEL, Thonon-les-Bains, France","active":true,"usgs":false}],"preferred":false,"id":898187,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Baer, Jan","contributorId":335369,"corporation":false,"usgs":false,"family":"Baer","given":"Jan","email":"","affiliations":[{"id":80381,"text":"Fisheries Research Station Baden-Württemberg, Langenargen, Germany","active":true,"usgs":false}],"preferred":false,"id":898188,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bean, Colin","contributorId":335370,"corporation":false,"usgs":false,"family":"Bean","given":"Colin","email":"","affiliations":[{"id":80382,"text":"University of Glasgow, Scotland","active":true,"usgs":false}],"preferred":false,"id":898189,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Kahlilainen, Kimmo","contributorId":335371,"corporation":false,"usgs":false,"family":"Kahlilainen","given":"Kimmo","email":"","affiliations":[{"id":29870,"text":"University of Helsinki, Finland","active":true,"usgs":false}],"preferred":false,"id":898190,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Sandstrom, Alfred","contributorId":335372,"corporation":false,"usgs":false,"family":"Sandstrom","given":"Alfred","email":"","affiliations":[{"id":12666,"text":"Swedish University of Agricultural Sciences","active":true,"usgs":false}],"preferred":false,"id":898191,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Selz, Oliver","contributorId":335373,"corporation":false,"usgs":false,"family":"Selz","given":"Oliver","email":"","affiliations":[{"id":80385,"text":"Federal Office for the Environment, Switzerland","active":true,"usgs":false}],"preferred":false,"id":898192,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Vonlanthen, Pascal","contributorId":335374,"corporation":false,"usgs":false,"family":"Vonlanthen","given":"Pascal","email":"","affiliations":[{"id":80386,"text":"Aquabios, Switzerland","active":true,"usgs":false}],"preferred":false,"id":898193,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Wanzenbock, Josef","contributorId":335375,"corporation":false,"usgs":false,"family":"Wanzenbock","given":"Josef","email":"","affiliations":[{"id":29872,"text":"University of Innsbruck, Austria","active":true,"usgs":false}],"preferred":false,"id":898194,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Weidel, Brian 0000-0001-6095-2773 bweidel@usgs.gov","orcid":"https://orcid.org/0000-0001-6095-2773","contributorId":2485,"corporation":false,"usgs":true,"family":"Weidel","given":"Brian","email":"bweidel@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":898195,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70252633,"text":"70252633 - 2024 - Paleogene sedimentary basin development in southern Nevada, USA","interactions":[],"lastModifiedDate":"2024-04-23T15:21:17.583267","indexId":"70252633","displayToPublicDate":"2024-03-29T09:07:17","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2626,"text":"Lithosphere","active":true,"publicationSubtype":{"id":10}},"title":"Paleogene sedimentary basin development in southern Nevada, USA","docAbstract":"<p><span>The cause of the transition from Mesozoic and early Cenozoic crustal shortening to later extension in the western United States is debated. In many parts of the extant Sevier hinterland, now the Basin and Range Province, the sedimentary sections that provide the most direct record of that transition remain poorly studied and lack meaningful age control. In this paper, we present field characterization supported by U-Pb detrital zircon and&nbsp;</span><sup>40</sup><span>Ar/</span><sup>39</sup><span>Ar feldspar ages for ten sections across southern Nevada. We describe a newly identified basin, here named the Fallout Hills basin, which preserves &gt;1.0 km of sedimentary deposits as old as middle Eocene, ca. 48 Ma. Deposition occurred during the 20 m.y. (million years) before the 27.60 ± 0.03 Ma Monotony Tuff blanketed much of south-central Nevada, based on 47.6 Ma and younger detrital zircon maximum depositional ages (MDAs) from near the Pintwater and Spotted Ranges. Elsewhere in southern Nevada, prevolcanic Cenozoic strata commonly form thinner (~100 m), isolated exposures that yield detrital zircon MDAs ≤10 m.y. older than (and in some cases essentially the same age as) the ca. 27–28 Ma ignimbrites that cap the sections. A variable but overall upward-fining facies pattern is observed in both the Fallout Hills basin and the thinner sections. These localized patterns imply topographic changes that are unlikely to reflect plate-scale processes and are not consistent with large-magnitude extension. Instead, variable uplift due to magmatism combined with antecedent topographic relief from thrust faulting and subsequent erosion likely provided accommodation for these deposits.</span></p>","language":"English","publisher":"GeoScienceWorld","doi":"10.2113/2024/lithosphere_2023_225","usgsCitation":"Lundstern, J., Schwartz, T.M., Mercer, C.M., Colgan, J.P., Workman, J.B., and Morgan, L.E., 2024, Paleogene sedimentary basin development in southern Nevada, USA: Lithosphere, v. 2024, no. 1, p. 1-34, https://doi.org/10.2113/2024/lithosphere_2023_225.","productDescription":"34 p.","startPage":"1","endPage":"34","ipdsId":"IP-148278","costCenters":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true},{"id":35995,"text":"Geology, Geophysics, and Geochemistry Science Center","active":true,"usgs":true}],"links":[{"id":440020,"rank":3,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.2113/2024/lithosphere_2023_225","text":"Publisher Index Page"},{"id":435012,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9JCU656","text":"USGS data release","linkHelpText":"U-Pb detrital zircon data and Ar feldspar data from middle Cenozoic sandstones and volcanic tuffs from southern Nevada, USA"},{"id":427307,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Nevada","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -118.05180212571499,\n              38\n            ],\n            [\n              -118.05180212571499,\n              36\n            ],\n            [\n              -113.78852158610961,\n              36\n            ],\n            [\n              -113.78852158610961,\n              38\n            ],\n            [\n              -118.05180212571499,\n              38\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"2024","issue":"1","noUsgsAuthors":false,"publicationDate":"2024-03-29","publicationStatus":"PW","contributors":{"authors":[{"text":"Lundstern, Jens-Erik 0000-0003-0000-8013","orcid":"https://orcid.org/0000-0003-0000-8013","contributorId":264189,"corporation":false,"usgs":true,"family":"Lundstern","given":"Jens-Erik","email":"","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":897774,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Schwartz, Theresa Maude 0000-0001-6606-4072","orcid":"https://orcid.org/0000-0001-6606-4072","contributorId":245180,"corporation":false,"usgs":true,"family":"Schwartz","given":"Theresa","email":"","middleInitial":"Maude","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":897775,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mercer, Cameron Mark 0000-0003-0534-848X","orcid":"https://orcid.org/0000-0003-0534-848X","contributorId":301880,"corporation":false,"usgs":true,"family":"Mercer","given":"Cameron","email":"","middleInitial":"Mark","affiliations":[{"id":35995,"text":"Geology, Geophysics, and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":897776,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Colgan, Joseph P. 0000-0001-6671-1436 jcolgan@usgs.gov","orcid":"https://orcid.org/0000-0001-6671-1436","contributorId":1649,"corporation":false,"usgs":true,"family":"Colgan","given":"Joseph","email":"jcolgan@usgs.gov","middleInitial":"P.","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true},{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":897777,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Workman, Jeremiah B. 0000-0001-7816-6420 jworkman@usgs.gov","orcid":"https://orcid.org/0000-0001-7816-6420","contributorId":714,"corporation":false,"usgs":true,"family":"Workman","given":"Jeremiah","email":"jworkman@usgs.gov","middleInitial":"B.","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":897778,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Morgan, Leah E. 0000-0001-9930-524X lemorgan@usgs.gov","orcid":"https://orcid.org/0000-0001-9930-524X","contributorId":176174,"corporation":false,"usgs":true,"family":"Morgan","given":"Leah","email":"lemorgan@usgs.gov","middleInitial":"E.","affiliations":[{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":897779,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70254483,"text":"70254483 - 2024 - Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Cocos Island and Guam","interactions":[],"lastModifiedDate":"2024-05-28T12:03:32.945188","indexId":"70254483","displayToPublicDate":"2024-03-29T07:01:26","publicationYear":"2024","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":4,"text":"Other Government Series"},"title":"Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Cocos Island and Guam","docAbstract":"<div class=\"item-page-field\"><div class=\"simple-view-element\"><div class=\"simple-view-element-body\"><span class=\"dont-break-out ng-star-inserted\"><span>Efforts to recover the critically endangered ko’ko’ (Guam rail, Hypotaenidia owstoni) through establishing an experimental population on the island of Rota in the Commonwealth of the Northern Mariana Islands have been ongoing for three decades. The U.S. Geological Survey collaborated with the Guam Division of Aquatic and Wildlife Resources and the Government of Guam to evaluate whether objectives for three projects can be met with current protocols. The aim of this report was to evaluate existing data provided on (1) ko’ko’ population monitoring on Rota; (2) ko’ko’ population establishment on Rota; plus (3) evaluation of three wildlife monitoring datasets for ko’ko’ on Cocos Island, endangered pulattat (Mariana common moorhen, Gallinula chloropus guami) on Guam, and introduced ungulate species on Guam. Data sources included playback call surveys, point count surveys, release events and studbook information, telemetry of radio-marked birds, as well as landcover classes, storm events, and Oceanic Niño Index information to relate environmental factors to ko’ko’ persistence. Major findings were that reaching objectives was constrained by limited data availability and quality. Suggestions for future study include developing detailed protocols for surveys and data collection, standardizing training procedures for observers, improving data organization and archiving, using methods like distance sampling that account for imperfect detection, and collecting additional data on nests and prey resources to understand drivers of ko’ko’ density and survival. While the current data provide a preliminary assessment, improved sampling designs and consistent protocols are needed to fully address objectives related to the recovery of the ko’ko’. The report provides a roadmap for enhancing data collection and analysis to support management decisions and reach conservation translocation goals about this endangered species and related projects.</span></span></div></div></div>","language":"English","publisher":"University of Hawai‘i at Hilo","usgsCitation":"Camp, R.J., Nash, S.A., and Paxton, K.L., 2024, Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Cocos Island and Guam, v. 109, i, 97 p.","productDescription":"i, 97 p.","ipdsId":"IP-158804","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":429323,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":429322,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://hdl.handle.net/10790/5391"}],"country":"United States","otherGeospatial":"Guam, Mariana Islands","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              144.36831185740562,\n              12.968139662029017\n            ],\n            [\n              146.33486459178124,\n              12.968139662029017\n            ],\n            [\n              146.33486459178124,\n              15.534122254722561\n            ],\n            [\n              144.36831185740562,\n              15.534122254722561\n            ],\n            [\n              144.36831185740562,\n              12.968139662029017\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"109","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Camp, Richard J. 0000-0001-7008-923X rick_camp@usgs.gov","orcid":"https://orcid.org/0000-0001-7008-923X","contributorId":189964,"corporation":false,"usgs":true,"family":"Camp","given":"Richard","email":"rick_camp@usgs.gov","middleInitial":"J.","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true},{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":true,"id":901555,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Nash, Sarah A B","contributorId":336952,"corporation":false,"usgs":false,"family":"Nash","given":"Sarah","email":"","middleInitial":"A B","affiliations":[{"id":13341,"text":"Hawai‘i Cooperative Studies Unit, University of Hawai‘i at Hilo","active":true,"usgs":false}],"preferred":false,"id":901556,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Paxton, Kristina L. 0000-0003-2321-5090","orcid":"https://orcid.org/0000-0003-2321-5090","contributorId":41917,"corporation":false,"usgs":false,"family":"Paxton","given":"Kristina","email":"","middleInitial":"L.","affiliations":[{"id":12981,"text":"Department of Biological Sciences, University of Southern Mississippi","active":true,"usgs":false},{"id":6977,"text":"University of Hawai`i at Hilo","active":true,"usgs":false}],"preferred":false,"id":901557,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70255663,"text":"70255663 - 2024 - A new database of giant impacts over a wide range of masses and with material strength: A first analysis of outcomes","interactions":[],"lastModifiedDate":"2024-06-27T12:08:36.445338","indexId":"70255663","displayToPublicDate":"2024-03-29T06:59:12","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":8607,"text":"The Planetary Science Journal","active":true,"publicationSubtype":{"id":10}},"title":"A new database of giant impacts over a wide range of masses and with material strength: A first analysis of outcomes","docAbstract":"<div class=\"article-text wd-jnl-art-abstract cf\"><p>In the late stage of terrestrial planet formation, planets are predicted to undergo pairwise collisions known as giant impacts. Here, we present a high-resolution database of giant impacts for differentiated colliding bodies of iron–silicate composition, with target masses ranging from 1<span>&nbsp;</span><strong>×</strong><span>&nbsp;</span>10<sup>−4</sup><i>M</i><sub>⊕</sub><span>&nbsp;</span>up to super-Earths (5<span>&nbsp;</span><i>M</i><sub>⊕</sub>). We vary the impactor-to-target mass ratio, core–mantle (iron–silicate) fraction, impact velocity, and impact angle. Strength in the form of friction is included in all simulations. We find that, due to strength, the collisions with bodies smaller than about 2<span>&nbsp;</span><strong>×</strong>10<sup>−3</sup><i>M</i><sub>⊕</sub><span>&nbsp;</span>can result in irregular shapes, compound-core structures, and captured binaries. We observe that the characteristic escaping velocity of smaller remnants (debris) is approximately half of the impact velocity, significantly faster than currently assumed in<span>&nbsp;</span><i>N</i>-body simulations of planet formation. Incorporating these results in<span>&nbsp;</span><i>N</i>-body planet formation studies would provide more realistic debris–debris and debris–planet interactions.</p></div>","language":"English","publisher":"IOP Publishing","doi":"10.3847/PSJ/ad2178","usgsCitation":"Emsenhuber, A., Asphaug, E., Cambioni, S., Gabriel, T.S., Schwartz, S.R., Melikyan, R.E., and Denton, C.A., 2024, A new database of giant impacts over a wide range of masses and with material strength: A first analysis of outcomes: The Planetary Science Journal, v. 5, 59, 20 p., https://doi.org/10.3847/PSJ/ad2178.","productDescription":"59, 20 p.","ipdsId":"IP-141202","costCenters":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"links":[{"id":440022,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3847/psj/ad2178","text":"Publisher Index Page"},{"id":430563,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"5","noUsgsAuthors":false,"publicationDate":"2024-03-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Emsenhuber, Alexandre","contributorId":339775,"corporation":false,"usgs":false,"family":"Emsenhuber","given":"Alexandre","email":"","affiliations":[{"id":81400,"text":"Ludwig Maximillian University Munchen","active":true,"usgs":false}],"preferred":false,"id":905066,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Asphaug, Erik","contributorId":211376,"corporation":false,"usgs":false,"family":"Asphaug","given":"Erik","email":"","affiliations":[{"id":24796,"text":"NASA Ames Research Center","active":true,"usgs":false}],"preferred":false,"id":905067,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cambioni, Saverio 0000-0001-6294-4523","orcid":"https://orcid.org/0000-0001-6294-4523","contributorId":304708,"corporation":false,"usgs":false,"family":"Cambioni","given":"Saverio","email":"","affiliations":[{"id":66148,"text":"Massachusettes Institute of Technology","active":true,"usgs":false}],"preferred":false,"id":905068,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Gabriel, Travis S.J. 0000-0002-9767-4153","orcid":"https://orcid.org/0000-0002-9767-4153","contributorId":267903,"corporation":false,"usgs":true,"family":"Gabriel","given":"Travis","middleInitial":"S.J.","affiliations":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"preferred":true,"id":905069,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Schwartz, Stephen R.","contributorId":339776,"corporation":false,"usgs":false,"family":"Schwartz","given":"Stephen","email":"","middleInitial":"R.","affiliations":[{"id":7042,"text":"University of Arizona","active":true,"usgs":false}],"preferred":false,"id":905070,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Melikyan, Robert E.","contributorId":339777,"corporation":false,"usgs":false,"family":"Melikyan","given":"Robert","email":"","middleInitial":"E.","affiliations":[{"id":7042,"text":"University of Arizona","active":true,"usgs":false}],"preferred":false,"id":905071,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Denton, C. Adeene","contributorId":339778,"corporation":false,"usgs":false,"family":"Denton","given":"C.","email":"","middleInitial":"Adeene","affiliations":[],"preferred":false,"id":905073,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70254474,"text":"70254474 - 2024 - Numerical modeling of debris flows: A conceptual assessment","interactions":[],"lastModifiedDate":"2024-05-28T11:49:50.632421","indexId":"70254474","displayToPublicDate":"2024-03-29T06:48:23","publicationYear":"2024","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Numerical modeling of debris flows: A conceptual assessment","docAbstract":"<div id=\"Abs1-section\" class=\"c-article-section\"><div id=\"Abs1-content\" class=\"c-article-section__content\"><p>Real-world hazard evaluation poses many challenges for the development and application of numerical models of debris flows. In this chapter we provide a conceptual overview of physically based, depth-averaged models designed to simulate debris-flow motion across three-dimensional terrain. When judiciously formulated and applied, these models can provide useful information about anticipated depths, speeds, and extents of debris-flow inundation as well as debris interactions with structures such as levees and dams. Depth-averaged debris-flow models can differ significantly from one another, however. Some of the greatest differences result from simulation of one-phase versus two-phase flow, use of parsimonious versus information-intensive initial and boundary conditions, use of tuning coefficients versus physically measureable parameters, application of dissimilar numerical solution techniques, and variations in computational speed and model accessibility. This overview first addresses these and related attributes of depth-averaged debris-flow models. It then describes model testing and application to hazard evaluation, with a focus on our own model, D-Claw. The overview concludes with a discussion of outstanding challenges for development of improved debris-flow models and suggestions for prospective model users.</p></div></div>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Advances in Debris-flow Science and Practice","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Springer Nature","doi":"10.1007/978-3-031-48691-3_5","usgsCitation":"Iverson, R.M., and George, D.L., 2024, Numerical modeling of debris flows: A conceptual assessment, chap. <i>of</i> Advances in Debris-flow Science and Practice, p. 127-163, https://doi.org/10.1007/978-3-031-48691-3_5.","productDescription":"37 p.","startPage":"127","endPage":"163","ipdsId":"IP-140697","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":429319,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationDate":"2024-03-29","publicationStatus":"PW","contributors":{"authors":[{"text":"Iverson, Richard M. 0000-0002-7369-3819","orcid":"https://orcid.org/0000-0002-7369-3819","contributorId":336939,"corporation":false,"usgs":true,"family":"Iverson","given":"Richard","email":"","middleInitial":"M.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":901525,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"George, David L. 0000-0002-5726-0255 dgeorge@usgs.gov","orcid":"https://orcid.org/0000-0002-5726-0255","contributorId":3120,"corporation":false,"usgs":true,"family":"George","given":"David","email":"dgeorge@usgs.gov","middleInitial":"L.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":901526,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70252473,"text":"sir20245008 - 2024 - A comparison of contemporary and historical hydrology and water quality in the foothills and coastal plain of the Arctic National Wildlife Refuge, Arctic Slope, northern Alaska","interactions":[],"lastModifiedDate":"2026-02-02T22:15:49.88748","indexId":"sir20245008","displayToPublicDate":"2024-03-28T09:44:52","publicationYear":"2024","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2024-5008","displayTitle":"A Comparison of Contemporary and Historical Hydrology and Water Quality in the Foothills and Coastal Plain of the Arctic National Wildlife Refuge, Arctic Slope, Northern Alaska","title":"A comparison of contemporary and historical hydrology and water quality in the foothills and coastal plain of the Arctic National Wildlife Refuge, Arctic Slope, northern Alaska","docAbstract":"<p>The Arctic National Wildlife Refuge is a unique landscape in northern Alaska with limited water resources, substantial biodiversity of rare and threatened species, as well as oil and gas resources. The region has unique hydrology related to perennial springs, and the formation of large aufeis fields—sheets of ice that grow in the river channels where water reaches the surface in the winter and freezes. This work aims to update our understanding of water resources and water quality in the springs, streams, rivers, and lakes of this region, returning to sites sampled by the U.S. Geological Survey in the 1970s. We resampled eight streams, four springs, and six lakes for hydrological metrics, water quality, and macroinvertebrates, and recalculated flood-frequency metrics for rivers using updated data and modern techniques. Aufeis field melt rates were also assessed for the past several decades. Although the available data preclude trend determinations in most cases, our analysis and comparison to the historical sampling indicates an increase in dissolved ions for streams and springs, faster and earlier aufeis melt, and similar macroinvertebrate populations.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20245008","usgsCitation":"Koch, J.C., Best, H., Baughman, C., Couvillion, C., Carey, M.P., and Conaway, J., 2024, A comparison of contemporary and historical hydrology and water quality in the foothills and coastal plain of the Arctic National Wildlife Refuge, Arctic Slope, northern Alaska: U.S. Geological Survey Scientific Investigations Report 2024–5008, 24 p., https://doi.org/10.3133/sir20245008.","productDescription":"Report: viii, 24 p.; 2 Data Releases; Correction Note","onlineOnly":"Y","additionalOnlineFiles":"Y","ipdsId":"IP-151990","costCenters":[{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true}],"links":[{"id":499422,"rank":9,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_116206.htm","linkFileType":{"id":5,"text":"html"}},{"id":498378,"rank":8,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/sir/2024/5008/correctionNote.txt","text":"Correction note","size":"1 KB","linkFileType":{"id":2,"text":"txt"}},{"id":430506,"rank":7,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7KK98VP","text":"USGS data release","description":"USGS data release","linkHelpText":"Rasters of observed aufeis deposits within rivers of the 1002 Area based on historical Landsat imagery, 1985-2022"},{"id":430429,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7X34VHM","text":"USGS data release","description":"USGS data release","linkHelpText":"Macroinvertebrates from streams and springs in the 1002 region of the Arctic National Wildlife Refuge, Alaska, 2021"},{"id":427077,"rank":5,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2024/5008/sir20245008.XML"},{"id":427076,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2024/5008/images"},{"id":427075,"rank":3,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/sir20245008/full","text":"Report","linkFileType":{"id":5,"text":"html"},"description":"SIR 2024-5008"},{"id":427074,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2024/5008/sir20245008.pdf","text":"Report","size":"12.1 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2024-5008"},{"id":427073,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2024/5008/sir20245008.jpg"}],"country":"United States","state":"Alaska","otherGeospatial":"Arctic National Wildlife Refuge","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -147.35991062435545,\n              70.47943246978403\n            ],\n            [\n              -147.35991062435545,\n              68.94103321326239\n            ],\n            [\n              -141.60307468685548,\n              68.94103321326239\n            ],\n            [\n              -141.60307468685548,\n              70.47943246978403\n            ],\n            [\n              -147.35991062435545,\n              70.47943246978403\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/asc/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/asc/\">Alaska Science Center</a><br>U.S. Geological Survey<br>4210 University Drive<br>Anchorage, Alaska 99508</p><p><a href=\"https://pubs.usgs.gov/contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Methods</li><li>Comparing Hydrology and Water Quality Between the Historical and Contemporary Periods</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"publishedDate":"2024-03-28","noUsgsAuthors":false,"publicationDate":"2024-03-28","publicationStatus":"PW","contributors":{"authors":[{"text":"Koch, Joshua C. 0000-0001-7180-6982 jkoch@usgs.gov","orcid":"https://orcid.org/0000-0001-7180-6982","contributorId":202532,"corporation":false,"usgs":true,"family":"Koch","given":"Joshua","email":"jkoch@usgs.gov","middleInitial":"C.","affiliations":[{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":897244,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Best, Heather 0000-0003-0764-3060","orcid":"https://orcid.org/0000-0003-0764-3060","contributorId":225684,"corporation":false,"usgs":true,"family":"Best","given":"Heather","email":"","affiliations":[{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true}],"preferred":true,"id":897245,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Baughman, Carson 0000-0002-9423-9324 cbaughman@usgs.gov","orcid":"https://orcid.org/0000-0002-9423-9324","contributorId":169657,"corporation":false,"usgs":true,"family":"Baughman","given":"Carson","email":"cbaughman@usgs.gov","affiliations":[{"id":118,"text":"Alaska Science Center Geography","active":true,"usgs":true}],"preferred":true,"id":897246,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Couvillion, Charles 0009-0006-6187-8708","orcid":"https://orcid.org/0009-0006-6187-8708","contributorId":334191,"corporation":false,"usgs":true,"family":"Couvillion","given":"Charles","email":"","affiliations":[{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true}],"preferred":true,"id":897247,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Carey, Michael P. 0000-0002-3327-8995 mcarey@usgs.gov","orcid":"https://orcid.org/0000-0002-3327-8995","contributorId":5397,"corporation":false,"usgs":true,"family":"Carey","given":"Michael","email":"mcarey@usgs.gov","middleInitial":"P.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":897248,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Conaway, Jeff 0000-0002-3036-592X","orcid":"https://orcid.org/0000-0002-3036-592X","contributorId":214226,"corporation":false,"usgs":true,"family":"Conaway","given":"Jeff","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true}],"preferred":true,"id":897249,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70261227,"text":"70261227 - 2024 - Canopy cover and microtopography control precipitation-enhanced thaw of ecosystem-protected permafrost","interactions":[],"lastModifiedDate":"2024-12-02T14:59:53.059963","indexId":"70261227","displayToPublicDate":"2024-03-28T08:52:51","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":8116,"text":"Journal of Geophysical Research-Biogeosciences","active":true,"publicationSubtype":{"id":10}},"title":"Canopy cover and microtopography control precipitation-enhanced thaw of ecosystem-protected permafrost","docAbstract":"<p><span>Northern high-latitudes are projected to get warmer and wetter, which will affect rates of permafrost thaw and mechanisms by which thaw occurs. To better understand the impact of rain, as well as other factors such as snow depth, canopy cover, and microtopography, we instrumented a degrading permafrost plateau in south-central Alaska with high-resolution soil temperature sensors. The site contains ecosystem-protected permafrost, which persists in unfavorable climates due to favorable ecologic conditions. Our study (2020–2022) captured three of the snowiest years and three of the four wettest years since the site was first studied in 2015. Average thaw rates along an across-site transect increased nine-fold from 6 ± 5 cm yr</span><sup>−1</sup><span>&nbsp;(2015–2020) to 56 ± 12 cm yr</span><sup>−1</sup><span>&nbsp;(2020–2022). This thaw was not uniform. Hummock locations, residing on topographic high points with relatively dense canopy, experienced only 8 ± 9 cm yr</span><sup>−1</sup><span>&nbsp;of thaw, on average. Hollows, topographic low points with low canopy cover, and transition locations, which had canopy cover and elevation between hummocks and hollows, thawed 44 ± 6 cm yr</span><sup>−1</sup><span>&nbsp;and 39 ± 13 cm yr</span><sup>−1</sup><span>, respectively. Mechanisms of thaw differed between these locations. Hollows had high warm-season soil moisture, which increased thermal conductivity, and deep cold-season snow coverage, which insulated soil. Transition locations thawed primarily due to thermal energy transported through subsurface taliks during individual rain events. Most increases in depth to permafrost occurred below the ∼45 cm thickness seasonally frozen layer, and therefore, expanded existing site taliks. Results highlight the importance of canopy cover and microtopography in controlling soil thermal inputs, the ability of subsurface runoff from individual rain events to trigger warming and thaw, and the acceleration of thaw caused by consecutive wet and snowy years. As northern high-latitudes become warmer and wetter, and weather events become more extreme, the importance of these controls on soil warming and thaw is likely to increase.</span></p>","language":"English","publisher":"IOP Science","doi":"10.1088/1748-9326/ad31d7","usgsCitation":"Eklof, J., Jones, B., Dafflon, B., Devoie, E., Ring, K.M., English, M., Waldrop, M., and Neumann, R., 2024, Canopy cover and microtopography control precipitation-enhanced thaw of ecosystem-protected permafrost: Journal of Geophysical Research-Biogeosciences, v. 19, 044055, 15 p., https://doi.org/10.1088/1748-9326/ad31d7.","productDescription":"044055, 15 p.","ipdsId":"IP-162428","costCenters":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"links":[{"id":467020,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1088/1748-9326/ad31d7","text":"Publisher Index Page"},{"id":464623,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","otherGeospatial":"Kenai National Wildlife Refuge","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -151.08008194818692,\n              60.7350967339373\n            ],\n            [\n              -151.08008194818692,\n              59.91705332357239\n            ],\n            [\n              -149.68740720063502,\n              59.91705332357239\n            ],\n            [\n              -149.68740720063502,\n              60.7350967339373\n            ],\n            [\n              -151.08008194818692,\n              60.7350967339373\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"19","noUsgsAuthors":false,"publicationDate":"2024-03-28","publicationStatus":"PW","contributors":{"authors":[{"text":"Eklof, Joel","contributorId":346833,"corporation":false,"usgs":false,"family":"Eklof","given":"Joel","email":"","affiliations":[{"id":82988,"text":" Civil and Environmental Engineering, University of Washington, Seattle, WA, USA. ","active":true,"usgs":false}],"preferred":false,"id":919973,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Jones, Benjamin M. 0000-0002-1517-4711","orcid":"https://orcid.org/0000-0002-1517-4711","contributorId":208625,"corporation":false,"usgs":false,"family":"Jones","given":"Benjamin M.","affiliations":[{"id":37848,"text":"Water and Environmental Research Center, University of Alaska Fairbanks, Fairbanks, Alaska, UNITED STATES","active":true,"usgs":false}],"preferred":true,"id":919974,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dafflon, Baptiste","contributorId":245441,"corporation":false,"usgs":false,"family":"Dafflon","given":"Baptiste","email":"","affiliations":[{"id":38900,"text":"Lawrence Berkeley National Laboratory","active":true,"usgs":false}],"preferred":false,"id":919975,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Devoie, Elise","contributorId":346836,"corporation":false,"usgs":false,"family":"Devoie","given":"Elise","email":"","affiliations":[{"id":82991,"text":" Department of Civil Engineering, Queen’s University, Kingston, ON, Canada ","active":true,"usgs":false}],"preferred":false,"id":919976,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Ring, Katie M.","contributorId":346837,"corporation":false,"usgs":false,"family":"Ring","given":"Katie","email":"","middleInitial":"M.","affiliations":[{"id":82993,"text":"Civil and Environmental Engineering, University of Washington, Seattle, WA, USA.","active":true,"usgs":false}],"preferred":false,"id":919977,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"English, Marie","contributorId":346838,"corporation":false,"usgs":false,"family":"English","given":"Marie","email":"","affiliations":[{"id":82988,"text":" Civil and Environmental Engineering, University of Washington, Seattle, WA, USA. ","active":true,"usgs":false}],"preferred":false,"id":919978,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Waldrop, Mark 0000-0003-1829-7140","orcid":"https://orcid.org/0000-0003-1829-7140","contributorId":216758,"corporation":false,"usgs":true,"family":"Waldrop","given":"Mark","affiliations":[],"preferred":true,"id":919979,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Neumann, Rebecca","contributorId":224763,"corporation":false,"usgs":false,"family":"Neumann","given":"Rebecca","affiliations":[{"id":16962,"text":"U. Washington","active":true,"usgs":false}],"preferred":false,"id":919980,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70254612,"text":"70254612 - 2024 - Evaluation of an impulse-response emulator for groundwater contaminant transport modeling","interactions":[],"lastModifiedDate":"2024-11-22T15:44:58.044603","indexId":"70254612","displayToPublicDate":"2024-03-28T08:47:14","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3825,"text":"Groundwater","active":true,"publicationSubtype":{"id":10}},"title":"Evaluation of an impulse-response emulator for groundwater contaminant transport modeling","docAbstract":"<p><span>There is a significant need to develop decision support tools capable of delivering accurate representations of environmental conditions, such as ground and surface water solute concentrations, in a timely and computationally efficient manner. Such tools can be leveraged to assess a large number of potential management strategies for mitigating non-point source pollutants. Here, we assess the effectiveness of the impulse-response emulation approach to approximate process-based groundwater model estimates of solute transport from MODFLOW and MT3D over a wide range of model inputs and parameters, with the goal of assessing where in parameter space the assumptions underlying this emulation approach are valid. The impulse-response emulator was developed using the sensitivity analysis utilities in the PEST++ software suite and is capable of approximating MODFLOW/MT3D estimates of solute transport over a large portion of the parameter space tested, except in cases where the Courant number is above 0.5. Across all runs tested, the highest percent errors were at the plume fronts. These results suggest that the impulse-response approach may be suitable for emulation of solute transport models for a wide range of cases, except when high-resolution outputs are needed, or when very low concentrations at plume edges are of particular interest.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/gwat.13405","usgsCitation":"Heerspink, B.P., Fienen, M., and Reeves, H.W., 2024, Evaluation of an impulse-response emulator for groundwater contaminant transport modeling: Groundwater, v. 62, no. 6, p. 945-956, https://doi.org/10.1111/gwat.13405.","productDescription":"12 p.","startPage":"945","endPage":"956","ipdsId":"IP-153543","costCenters":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"links":[{"id":498231,"rank":3,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/gwat.13405","text":"Publisher Index Page"},{"id":429517,"rank":2,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":435013,"rank":1,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P13J3TCG","text":"USGS data release","linkHelpText":"Model Archive for an Impulse Response Emulator of Groundwater Contaminant Transport Models"}],"volume":"62","issue":"6","noUsgsAuthors":false,"publicationDate":"2024-03-28","publicationStatus":"PW","contributors":{"authors":[{"text":"Heerspink, Brent Porter 0000-0001-7591-5115","orcid":"https://orcid.org/0000-0001-7591-5115","contributorId":337146,"corporation":false,"usgs":true,"family":"Heerspink","given":"Brent","email":"","middleInitial":"Porter","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":902087,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Fienen, Michael N. 0000-0002-7756-4651","orcid":"https://orcid.org/0000-0002-7756-4651","contributorId":245632,"corporation":false,"usgs":true,"family":"Fienen","given":"Michael N.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":902088,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Reeves, Howard W. 0000-0001-8057-2081 hwreeves@usgs.gov","orcid":"https://orcid.org/0000-0001-8057-2081","contributorId":2307,"corporation":false,"usgs":true,"family":"Reeves","given":"Howard","email":"hwreeves@usgs.gov","middleInitial":"W.","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":902089,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70252583,"text":"70252583 - 2024 - Performance-based earthquake early warning for tall buildings","interactions":[],"lastModifiedDate":"2024-05-07T14:38:41.09501","indexId":"70252583","displayToPublicDate":"2024-03-28T06:52:06","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1436,"text":"Earthquake Spectra","active":true,"publicationSubtype":{"id":10}},"title":"Performance-based earthquake early warning for tall buildings","docAbstract":"<div id=\"abstracts\" data-extent=\"frontmatter\"><div class=\"core-container\"><div>The ShakeAlert Earthquake Early Warning (EEW) system aims to issue an advance warning to residents on the West Coast of the United States seconds before the ground shaking arrives, if the expected ground shaking exceeds a certain threshold. However, residents in tall buildings may experience much greater motion due to the dynamic response of the buildings. Therefore, there is an ongoing effort to extend ShakeAlert to include the contribution of building response to provide a more accurate estimation of the expected shaking intensity for tall buildings. Currently, the supposedly ideal solution of analyzing detailed finite element models of buildings under predicted ground-motion time histories is not theoretically or practically feasible. The authors have recently investigated existing simple methods to estimate peak floor acceleration (PFA) and determined these simple formulas are not practically suitable. Instead, this article explores another approach by extending the Pacific Earthquake Engineering Research Center (PEER) performance-based earthquake engineering (PBEE) to EEW, considering that every component involved in building response prediction is uncertain in the EEW scenario. While this idea is not new and has been proposed by other researchers, it has two shortcomings: (1) the simple beam model used for response prediction is prone to modeling uncertainty, which has not been quantified, and (2) the ground motions used for probabilistic demand models are not suitable for EEW applications. In this article, we address these two issues by incorporating modeling errors into the parameters of the beam model and using a new set of ground motions, respectively. We demonstrate how this approach could practically work using data from a 52-story building in downtown Los Angeles. Using the criteria and thresholds employed by previous researchers, we show that if peak ground acceleration (PGA) is accurately estimated, this approach can predict the expected level of human comfort in tall buildings.</div></div></div>","language":"English","publisher":"Earthquake Engineering Research Institute","doi":"10.1177/87552930241236762","usgsCitation":"Ghahari, S., Sargsyan, K., Parker, G.A., Swensen, D., Celebi, M., Haddadi, H., and Taciroglu, E., 2024, Performance-based earthquake early warning for tall buildings: Earthquake Spectra, v. 40, no. 2, p. 1425-1451, https://doi.org/10.1177/87552930241236762.","productDescription":"27 p.","startPage":"1425","endPage":"1451","ipdsId":"IP-155764","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":489212,"rank":2,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://www.osti.gov/biblio/2372960","text":"External Repository"},{"id":427234,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"40","issue":"2","noUsgsAuthors":false,"publicationDate":"2024-03-28","publicationStatus":"PW","contributors":{"authors":[{"text":"Ghahari, S. Farid","contributorId":296977,"corporation":false,"usgs":false,"family":"Ghahari","given":"S. Farid","affiliations":[{"id":13399,"text":"UCLA","active":true,"usgs":false}],"preferred":false,"id":897615,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Sargsyan, Khachik","contributorId":296978,"corporation":false,"usgs":false,"family":"Sargsyan","given":"Khachik","email":"","affiliations":[{"id":64263,"text":"Sandia Laboratories","active":true,"usgs":false}],"preferred":false,"id":897616,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Parker, Grace Alexandra 0000-0002-9445-2571","orcid":"https://orcid.org/0000-0002-9445-2571","contributorId":237091,"corporation":false,"usgs":true,"family":"Parker","given":"Grace","email":"","middleInitial":"Alexandra","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":897617,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Swensen, Dan","contributorId":296724,"corporation":false,"usgs":false,"family":"Swensen","given":"Dan","email":"","affiliations":[{"id":35312,"text":"CGS-CSMIP","active":true,"usgs":false}],"preferred":false,"id":897618,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Celebi, Mehmet 0000-0002-4769-7357 celebi@usgs.gov","orcid":"https://orcid.org/0000-0002-4769-7357","contributorId":200969,"corporation":false,"usgs":true,"family":"Celebi","given":"Mehmet","email":"celebi@usgs.gov","affiliations":[],"preferred":true,"id":897619,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Haddadi, Hamid","contributorId":296690,"corporation":false,"usgs":false,"family":"Haddadi","given":"Hamid","affiliations":[{"id":12640,"text":"California Geological Survey","active":true,"usgs":false}],"preferred":false,"id":897620,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Taciroglu, Ertugrul","contributorId":296979,"corporation":false,"usgs":false,"family":"Taciroglu","given":"Ertugrul","affiliations":[{"id":13399,"text":"UCLA","active":true,"usgs":false}],"preferred":false,"id":897621,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70254370,"text":"70254370 - 2024 - New uses for ancient middens: Bridging ecological and evolutionary perspectives","interactions":[],"lastModifiedDate":"2024-05-21T11:53:09.033076","indexId":"70254370","displayToPublicDate":"2024-03-28T06:51:52","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3653,"text":"Trends in Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"New uses for ancient middens: Bridging ecological and evolutionary perspectives","docAbstract":"<div class=\"section-paragraph\"><div class=\"section-paragraph\">Rodent middens provide a fine-scale spatiotemporal record of plant and animal communities over the late Quaternary. In the Americas, middens have offered insight into biotic responses to past environmental changes and historical factors influencing the distribution and diversity of species. However, few studies have used middens to investigate genetic or ecosystem level responses. Integrating midden studies with neoecology and experimental evolution can help address these gaps and test mechanisms underlying eco-evolutionary patterns across biological and spatiotemporal scales. Fully realizing the potential of middens to answer cross-cutting ecological and evolutionary questions and inform conservation goals in the Anthropocene will require a collaborative research community to exploit existing midden archives and mount new campaigns to leverage midden records globally.</div></div>","language":"English","publisher":"Cell Press","doi":"10.1016/j.tree.2023.12.003","usgsCitation":"Becklin, K.M., Betancourt, J.L., Braasch, J., Dezerald, O., Díaz, F., Gonzalez, A., Harbert, R., Holmgren, C.A., Hornsby, A.D., Latorre, C.L., Matocq, M., and Smith, F.A., 2024, New uses for ancient middens: Bridging ecological and evolutionary perspectives: Trends in Ecology and Evolution, v. 39, no. 5, p. 479-493, https://doi.org/10.1016/j.tree.2023.12.003.","productDescription":"15 p.","startPage":"479","endPage":"493","ipdsId":"IP-160143","costCenters":[{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true}],"links":[{"id":488161,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://archimer.ifremer.fr/doc/00885/99653/","text":"Publisher Index Page"},{"id":428973,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"39","issue":"5","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Becklin, Katie M.","contributorId":176591,"corporation":false,"usgs":false,"family":"Becklin","given":"Katie","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":901121,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Betancourt, Julio L. 0000-0002-7165-0743 jlbetanc@usgs.gov","orcid":"https://orcid.org/0000-0002-7165-0743","contributorId":3376,"corporation":false,"usgs":true,"family":"Betancourt","given":"Julio","email":"jlbetanc@usgs.gov","middleInitial":"L.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":554,"text":"Science and Decisions Center","active":true,"usgs":true}],"preferred":true,"id":901122,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Braasch, Joseph","contributorId":336823,"corporation":false,"usgs":false,"family":"Braasch","given":"Joseph","email":"","affiliations":[{"id":12727,"text":"Rutgers University","active":true,"usgs":false}],"preferred":false,"id":901123,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Dezerald, Olivier","contributorId":336824,"corporation":false,"usgs":false,"family":"Dezerald","given":"Olivier","email":"","affiliations":[{"id":80869,"text":"DECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France","active":true,"usgs":false}],"preferred":false,"id":901124,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Díaz, Francisca","contributorId":336825,"corporation":false,"usgs":false,"family":"Díaz","given":"Francisca","affiliations":[{"id":80870,"text":"Pontificia Universidad Católica de Valparaíso, Chile","active":true,"usgs":false}],"preferred":false,"id":901125,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Gonzalez, Angelica L.","contributorId":336826,"corporation":false,"usgs":false,"family":"Gonzalez","given":"Angelica L.","affiliations":[{"id":12727,"text":"Rutgers University","active":true,"usgs":false}],"preferred":false,"id":901126,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Harbert, Robert","contributorId":332112,"corporation":false,"usgs":false,"family":"Harbert","given":"Robert","email":"","affiliations":[{"id":79387,"text":"Stonehill College (MA)","active":true,"usgs":false}],"preferred":false,"id":901127,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Holmgren, Camille A.","contributorId":336827,"corporation":false,"usgs":false,"family":"Holmgren","given":"Camille","email":"","middleInitial":"A.","affiliations":[{"id":35093,"text":"Buffalo State University","active":true,"usgs":false}],"preferred":false,"id":901128,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Hornsby, Angela D.","contributorId":336828,"corporation":false,"usgs":false,"family":"Hornsby","given":"Angela","email":"","middleInitial":"D.","affiliations":[{"id":80871,"text":"Philip L. Wright Zoological Museum, Division of Biological Sciences, University of Montana","active":true,"usgs":false}],"preferred":false,"id":901129,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Latorre, Claudio L.","contributorId":331520,"corporation":false,"usgs":false,"family":"Latorre","given":"Claudio","email":"","middleInitial":"L.","affiliations":[{"id":79225,"text":"Pontificia Universidad Católica de Chile, Santiago, Chile","active":true,"usgs":false}],"preferred":false,"id":901130,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Matocq, Marjorie D.","contributorId":336829,"corporation":false,"usgs":false,"family":"Matocq","given":"Marjorie D.","affiliations":[{"id":16686,"text":"University of Nevada, Reno","active":true,"usgs":false}],"preferred":false,"id":901131,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Smith, Felisa A.","contributorId":194657,"corporation":false,"usgs":false,"family":"Smith","given":"Felisa","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":901132,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}}
,{"id":70252616,"text":"70252616 - 2024 - Evaluation of in vitro treatments against the causative agent of Diadema antillarum scuticociliatosis (DaSc)","interactions":[],"lastModifiedDate":"2024-04-01T11:24:51.990396","indexId":"70252616","displayToPublicDate":"2024-03-28T06:23:33","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1396,"text":"Diseases of Aquatic Organisms","active":true,"publicationSubtype":{"id":10}},"title":"Evaluation of in vitro treatments against the causative agent of Diadema antillarum scuticociliatosis (DaSc)","docAbstract":"<p class=\"abstract_block\">ABSTRACT: In the 1980s, a mass die-off of the long-spined sea urchin<span>&nbsp;</span><i>Diadema antillarum</i><span>&nbsp;</span>occurred on Florida and Caribbean coral reefs.<span>&nbsp;</span><i>D. antillarum</i><span>&nbsp;</span>populations largely did not recover, and in 2022, remaining populations experienced another mass mortality event. A ciliate most similar to<span>&nbsp;</span><i>Philaster apodigitiformis</i><span>&nbsp;</span>was identified as the causative agent of the 2022 event, which was named<span>&nbsp;</span><i>D. antillarum</i><span>&nbsp;</span>scuticociliatosis (DaSc). Here, we investigated possible treatments for this pathogen. We tested the efficacy of 10 compounds at final concentrations of 100, 50, 25, 12.5, 6.25, and 3.13 µM, or a 10-fold serial dilution series, against ciliates cultured from an infected<span>&nbsp;</span><i>D. antillarum</i><span>&nbsp;</span>specimen. Of the tested compounds, 8 induced 100% ciliate mortality at some dose after 24 h. The most effective (defined as those requiring the lowest dose to induce 100% ciliate mortality) were quinacrine and tomatine (both effective at 12.5 µM), followed by furaltadone and plumbagin (25 µM), bithionol sulfoxide and 2’4’ dihydroxychalcone (50 µM), and oxyclozanide and carnidazole (100 µM). Toltrazuril and a commercially available anticiliate product containing naphthoquinones were not effective at any dose tested. Shortened (15 min) time trials were performed using ciliate cultures reared in natural seawater to better reflect natural environmental conditions, and revealed that 2 of the compounds (quinacrine and tomatine) induced 100% ciliate mortality at 100 µM, with tomatine also effective at 50 µM. This study identified several treatments effective against the causative agent of DaSc<span>&nbsp;</span><i>in vitro</i>, but their toxicity and utility<span>&nbsp;</span><i>in vivo</i><span>&nbsp;</span>remain unknown.</p>","language":"English","publisher":"Inter-Research Science Publisher","doi":"10.3354/dao03776","usgsCitation":"Evans, J.S., Voelschow, J.J., Ritchie, I.T., Breitbart, M., Hewson, I., and Kellogg, C.A., 2024, Evaluation of in vitro treatments against the causative agent of Diadema antillarum scuticociliatosis (DaSc): Diseases of Aquatic Organisms, v. 157, p. 107-112, https://doi.org/10.3354/dao03776.","productDescription":"6 p.","startPage":"107","endPage":"112","ipdsId":"IP-157989","costCenters":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":440028,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3354/dao03776","text":"Publisher Index Page"},{"id":435014,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9D3CY2X","text":"USGS data release","linkHelpText":"Testing Treatments Against Parasitic Scuticociliate (Philaster apodigitiformis) that Causes Mass Mortality Among Sea Urchins (Diadema antillarum) - Results"},{"id":427261,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"157","noUsgsAuthors":false,"publicationDate":"2024-03-14","publicationStatus":"PW","contributors":{"authors":[{"text":"Evans, James S. 0000-0002-9977-1627 jsevans@usgs.gov","orcid":"https://orcid.org/0000-0002-9977-1627","contributorId":279528,"corporation":false,"usgs":true,"family":"Evans","given":"James","email":"jsevans@usgs.gov","middleInitial":"S.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":897707,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Voelschow, Julie Jenice 0000-0002-6605-9668","orcid":"https://orcid.org/0000-0002-6605-9668","contributorId":298433,"corporation":false,"usgs":true,"family":"Voelschow","given":"Julie","email":"","middleInitial":"Jenice","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":897708,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ritchie, Isabella T.","contributorId":304353,"corporation":false,"usgs":false,"family":"Ritchie","given":"Isabella","email":"","middleInitial":"T.","affiliations":[{"id":39241,"text":"College of Marine Science, University of South Florida","active":true,"usgs":false}],"preferred":false,"id":897709,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Breitbart, Mya","contributorId":139298,"corporation":false,"usgs":false,"family":"Breitbart","given":"Mya","email":"","affiliations":[{"id":7163,"text":"University of South Florida","active":true,"usgs":false}],"preferred":false,"id":897710,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hewson, Ian","contributorId":260785,"corporation":false,"usgs":false,"family":"Hewson","given":"Ian","affiliations":[{"id":12722,"text":"Cornell University","active":true,"usgs":false}],"preferred":false,"id":897711,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kellogg, Christina A. 0000-0002-6492-9455 ckellogg@usgs.gov","orcid":"https://orcid.org/0000-0002-6492-9455","contributorId":391,"corporation":false,"usgs":true,"family":"Kellogg","given":"Christina","email":"ckellogg@usgs.gov","middleInitial":"A.","affiliations":[{"id":506,"text":"Office of the AD Ecosystems","active":true,"usgs":true},{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":897712,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70252472,"text":"ofr20241014 - 2024 - Assessing influence from wastewater treatment facilities on Glorieta Creek and the Pecos River within Pecos National Historical Park, New Mexico, February–October 2022","interactions":[],"lastModifiedDate":"2024-06-21T19:11:07.137467","indexId":"ofr20241014","displayToPublicDate":"2024-03-27T10:44:49","publicationYear":"2024","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2024-1014","displayTitle":"Assessing Influence from Wastewater Treatment Facilities on Glorieta Creek and the Pecos River Within Pecos National Historical Park, New Mexico, February–October 2022","title":"Assessing influence from wastewater treatment facilities on Glorieta Creek and the Pecos River within Pecos National Historical Park, New Mexico, February–October 2022","docAbstract":"<p>The Pecos National Historical Park protects 2.9 miles of the Pecos River and part of Glorieta Creek within the park boundaries. Updated water-quality data can assist resource managers in determining if effluent from two nearby wastewater treatment plants (WWTPs) is affecting the quality of the water in the Pecos River and Glorieta Creek within the park. Water samples were collected four times in 2022 at two WWTP outfalls, two locations on Glorieta Creek, and two locations on the Pecos River. Water quality parameters (dissolved oxygen, water temperature, pH, turbidity, specific conductance) were measured in the field, and samples were collected and analyzed for major ions, trace elements, rare earth elements, nutrients, bacteria, and per- and polyfluoroalkyl substances (PFAS).</p><p>Specific conductance values in all samples collected from Glorieta Creek exceeded the New Mexico Surface Water Quality Standard (NMWQS) of 300 microsiemens per centimeter at 25 degrees Celsius. Concentrations of dissolved oxygen in three samples collected from Glorieta Creek and one sample for the Pecos WWTP did not meet the standard for high-quality cold-water use. Concentrations of <i>Escherichia coli</i> in samples from the Pecos WWTP exceeded the NMWQS of 235 colony-forming units per 100 milliliters during every sampling event. Concentrations of <i>E. coli</i> in samples collected from two sites on Glorieta Creek in August exceeded the NMWQS.</p><p>The chemical signature of water from Glorieta Creek indicated groundwater and (or) septic system contributions. Water samples collected from the Pecos River all had similar chemical signatures of calcium-bicarbonate type. Although concentrations of several trace elements were higher in samples from Glorieta Creek than in samples from the Pecos River, no concentrations exceeded the drinking-water standards. No concentrations exceeded aquatic life standards except for copper concentrations in two samples from the downstream location on Glorieta Creek. The trace element signature and the gadolinium anomalies in the WWTP samples indicate anthropogenic contributions.</p><p>Eleven of the 28 PFAS compounds analyzed were detected in samples during this study, with the treated wastewater effluent samples having the highest total PFAS concentrations. The total PFAS concentrations in samples from Glorieta Creek decreased by an order of magnitude as the creek flowed downstream. At the downstream site on the Pecos River, there was only one sample that had a detection of PFAS.<br></p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20241014","issn":"2331-1258","collaboration":"Prepared in cooperation with the National Park Service","usgsCitation":"Wilkins, K., Beisner, K.R., and Travis, R., 2024, Assessing influence from wastewater treatment facilities on Glorieta Creek and the Pecos River within Pecos National Historical Park, New Mexico, February–October 2022: U.S. Geological Survey Open-File Report 2024–1014, 29 p., https://doi.org/10.3133/ofr20241014.","productDescription":"Report: viii, 29 p; 1 Appendix; Dataset","numberOfPages":"42","onlineOnly":"Y","ipdsId":"IP-154223","costCenters":[{"id":472,"text":"New Mexico Water Science Center","active":true,"usgs":true}],"links":[{"id":427108,"rank":8,"type":{"id":28,"text":"Dataset"},"url":"https://doi.org/10.5066/F7P55KJN","text":"USGS water data for the Nation","linkHelpText":"- USGS National Water Information System database"},{"id":427110,"rank":7,"type":{"id":3,"text":"Appendix"},"url":"https://pubs.usgs.gov/of/2024/1014/ofr20241014_app01.csv","text":"Appendix 1","size":"22.5 KB","linkFileType":{"id":7,"text":"csv"},"description":"OFR 2024-1014 appendix 1 CVS"},{"id":427107,"rank":6,"type":{"id":3,"text":"Appendix"},"url":"https://pubs.usgs.gov/of/2024/1014/ofr20241014_app01.xlsx","text":"Appendix 1","size":"35.8 KB","linkFileType":{"id":3,"text":"xlsx"},"description":"OFR 2024-1014 appendix 1 XLSX","linkHelpText":"- Water Chemistry Data for Samples Collected by the U.S.  Geological Survey from Pecos National Historical Park in 2022"},{"id":427103,"rank":5,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/of/2024/1014/images"},{"id":427105,"rank":4,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/of/2024/1014/ofr20241014.XML","linkFileType":{"id":8,"text":"xml"},"description":"OFR 2024-1014 XML"},{"id":427179,"rank":3,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/ofr20241014/full","text":"Report","linkFileType":{"id":5,"text":"html"},"description":"OFR 2024-1014 HTML"},{"id":427104,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2024/1014/ofr20241014.pdf","text":"Report","size":"1.54 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2024-1014"},{"id":427102,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2024/1014/coverthb.jpg"}],"country":"United States","state":"New Mexico","otherGeospatial":"Glorieta Creek, Pecos National Historical Park, Pecos River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -105.81724909872004,\n              35.60709644922906\n            ],\n            [\n              -105.81724909872004,\n              35.48949638702851\n            ],\n            [\n              -105.62593291123609,\n              35.48949638702851\n            ],\n            [\n              -105.62593291123609,\n              35.60709644922906\n            ],\n            [\n              -105.81724909872004,\n              35.60709644922906\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a data-mce-href=\"https://www.usgs.gov/centers/nm-water\" href=\"https://www.usgs.gov/centers/nm-water\">New Mexico Water Science Center</a><br>U.S. Geological Survey<br>6700 Edith Blvd. NE<br>Albuquerque, NM 87113<br></p><p><a id=\"LPlnk103145\" class=\"OWAAutoLink\" title=\"https://pubs.usgs.gov/contact\" href=\"https://pubs.usgs.gov/contact\" data-auth=\"NotApplicable\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Methods</li><li>Aqueous Chemistry</li><li>Quality Assurance Samples</li><li>Influence From Wastewater Treatment Facilities on Glorieta Creek and the Pecos River Within Pecos National Historical Park</li><li>Summary</li><li>References Cited</li><li>Appendix 1</li></ul>","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"publishedDate":"2024-03-27","noUsgsAuthors":false,"publicationDate":"2024-03-27","publicationStatus":"PW","contributors":{"authors":[{"text":"Wilkins, K. 0000-0002-8096-0153","orcid":"https://orcid.org/0000-0002-8096-0153","contributorId":335027,"corporation":false,"usgs":true,"family":"Wilkins","given":"K.","affiliations":[{"id":472,"text":"New Mexico Water Science Center","active":true,"usgs":true}],"preferred":true,"id":897243,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Beisner, K. R. 0000-0002-2077-6899","orcid":"https://orcid.org/0000-0002-2077-6899","contributorId":30052,"corporation":false,"usgs":true,"family":"Beisner","given":"K.","middleInitial":"R.","affiliations":[{"id":472,"text":"New Mexico Water Science Center","active":true,"usgs":true}],"preferred":true,"id":897241,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Travis, R. E. 0000-0001-8601-7791 rtravis@usgs.gov","orcid":"https://orcid.org/0000-0001-8601-7791","contributorId":206438,"corporation":false,"usgs":true,"family":"Travis","given":"R.","email":"rtravis@usgs.gov","middleInitial":"E.","affiliations":[{"id":472,"text":"New Mexico Water Science Center","active":true,"usgs":true}],"preferred":true,"id":897242,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70269311,"text":"70269311 - 2024 - Integrated distance sampling models for simple point counts","interactions":[],"lastModifiedDate":"2025-07-18T14:49:39.054391","indexId":"70269311","displayToPublicDate":"2024-03-27T09:47:21","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1465,"text":"Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Integrated distance sampling models for simple point counts","docAbstract":"<p><span>Point counts (PCs) are widely used in biodiversity surveys but, despite numerous advantages, simple PCs suffer from several problems: detectability, and therefore abundance, is unknown; systematic spatiotemporal variation in detectability yields biased inferences, and unknown survey area prevents formal density estimation and scaling-up to the landscape level. We introduce integrated distance sampling (IDS) models that combine distance sampling (DS) with simple PC or detection/nondetection (DND) data to capitalize on the strengths and mitigate the weaknesses of each data type. Key to IDS models is the view of simple PC and DND data as aggregations of latent DS surveys that observe the same underlying density process. This enables the estimation of separate detection functions, along with distinct covariate effects, for all data types. Additional information from repeat or time-removal surveys, or variable survey duration, enables the separate estimation of the availability and perceptibility components of detectability with DS and PC data. IDS models reconcile spatial and temporal mismatches among data sets and solve the above-mentioned problems of simple PC and DND data. To fit IDS models, we provide JAGS code and the new “</span><span>IDS()</span><span>” function in the R package&nbsp;</span><i><span>unmarked</span></i><span>. Extant citizen-science data generally lack the information necessary to adjust for detection biases, but IDS models address this shortcoming, thus greatly extending the utility and reach of these data. In addition, they enable formal density estimation in hybrid designs, which efficiently combine DS with distance-free, point-based PC or DND surveys. We believe that IDS models have considerable scope in ecology, management, and monitoring.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecy.4292","usgsCitation":"Kery, M., Royle, A., Hallman, T., Robinson, D., Strebel, N., and Kellner, K.F., 2024, Integrated distance sampling models for simple point counts: Ecology, v. 105, no. 5, e4292, 14 p., https://doi.org/10.1002/ecy.4292.","productDescription":"e4292, 14 p.","ipdsId":"IP-147069","costCenters":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":492866,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecy.4292","text":"Publisher Index Page"},{"id":492538,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"105","issue":"5","noUsgsAuthors":false,"publicationDate":"2024-03-27","publicationStatus":"PW","contributors":{"authors":[{"text":"Kery, Marc","contributorId":168361,"corporation":false,"usgs":false,"family":"Kery","given":"Marc","affiliations":[{"id":12551,"text":"Swiss Ornithological Institute, Sempach, Switzerland","active":true,"usgs":false}],"preferred":false,"id":943421,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Royle, J. Andrew 0000-0003-3135-2167 aroyle@usgs.gov","orcid":"https://orcid.org/0000-0003-3135-2167","contributorId":146229,"corporation":false,"usgs":true,"family":"Royle","given":"J. Andrew","email":"aroyle@usgs.gov","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":943422,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hallman, Tyler","contributorId":358288,"corporation":false,"usgs":false,"family":"Hallman","given":"Tyler","affiliations":[{"id":85597,"text":"Swiss Ornithological Institute; University of Charlotte; Bangor University","active":true,"usgs":false}],"preferred":false,"id":943423,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Robinson, Doug","contributorId":358289,"corporation":false,"usgs":false,"family":"Robinson","given":"Doug","affiliations":[{"id":6680,"text":"Oregon State University","active":true,"usgs":false}],"preferred":false,"id":943424,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Strebel, Nicolas","contributorId":358290,"corporation":false,"usgs":false,"family":"Strebel","given":"Nicolas","affiliations":[{"id":67146,"text":"Swiss Ornithological Institute","active":true,"usgs":false}],"preferred":false,"id":943425,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kellner, Kenneth F.","contributorId":310338,"corporation":false,"usgs":false,"family":"Kellner","given":"Kenneth","email":"","middleInitial":"F.","affiliations":[{"id":6601,"text":"Michigan State University","active":true,"usgs":false}],"preferred":false,"id":943426,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70256537,"text":"70256537 - 2024 - Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)","interactions":[],"lastModifiedDate":"2024-08-08T11:56:17.731085","indexId":"70256537","displayToPublicDate":"2024-03-27T06:52:10","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":10142,"text":"Microbial Genomics","onlineIssn":"2057-5858","active":true,"publicationSubtype":{"id":10}},"title":"Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus)","docAbstract":"<p>With emerging infectious disease outbreaks in human, domestic and wild animal populations on the rise, improvements in pathogen characterization and surveillance are paramount for the protection of human and animal health, as well as the conservation of ecologically and economically important wildlife. Genomics offers a range of suitable tools to meet these goals, with metagenomic sequencing facilitating the characterization of whole microbial communities associated with emerging and endemic disease outbreaks. Here, we use metagenomic sequencing in a case-control study to identify microbes in lung tissue associated with newly observed pneumonia-related fatalities in 34 white-tailed deer (<span class=\"jp-italic\">Odocoileus virginianus</span>) in Wisconsin, USA. We identified 20 bacterial species that occurred in more than a single individual. Of these, only<span>&nbsp;</span><span class=\"jp-italic\">Clostridium novyi</span><span>&nbsp;</span>was found to substantially differ (in number of detections) between case and control sample groups; however, this difference was not statistically significant. We also detected several bacterial species associated with pneumonia and/or other diseases in ruminants (<span class=\"jp-italic\">Mycoplasma ovipneumoniae</span>,<span>&nbsp;</span><span class=\"jp-italic\">Trueperella pyogenes</span>,<span>&nbsp;</span><span class=\"jp-italic\">Pasteurella multocida</span>,<span>&nbsp;</span><span class=\"jp-italic\">Anaplasma phagocytophilum</span>,<span>&nbsp;</span><span class=\"jp-italic\">Fusobacterium necrophorum</span>); however, these species did not substantially differ between case and control sample groups. On average, we detected a larger number of bacterial species in case samples than controls, supporting the potential role of polymicrobial infections in this system. Importantly, we did not detect DNA of viruses or fungi, suggesting that they are not significantly associated with pneumonia in this system. Together, these results highlight the utility of metagenomic sequencing for identifying disease-associated microbes. This preliminary list of microbes will help inform future research on pneumonia-associated fatalities of white-tailed deer.</p>","language":"English","publisher":"Microbiology Society","doi":"10.1099/mgen.0.001214","usgsCitation":"Prentice, M.B., Gilbertson, M.L., Storm, D., Roy, A.H., Walsh, D.P., Pinkerton, M.E., and Kamath, P., 2024, Metagenomic sequencing sheds light on microbes putatively associated with pneumonia-related fatalities of white-tailed deer (Odocoileus virginianus): Microbial Genomics, v. 10, 001214, 13 p., https://doi.org/10.1099/mgen.0.001214.","productDescription":"001214, 13 p.","ipdsId":"IP-153981","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true},{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":440030,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1099/mgen.0.001214","text":"Publisher Index Page"},{"id":432408,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"10","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Prentice, Melanie B.","contributorId":341057,"corporation":false,"usgs":false,"family":"Prentice","given":"Melanie","email":"","middleInitial":"B.","affiliations":[{"id":7063,"text":"University of Maine","active":true,"usgs":false}],"preferred":false,"id":907865,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Gilbertson, Marie L.J.","contributorId":341058,"corporation":false,"usgs":false,"family":"Gilbertson","given":"Marie","email":"","middleInitial":"L.J.","affiliations":[{"id":16925,"text":"University of Wisconsin-Madison","active":true,"usgs":false}],"preferred":false,"id":907866,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Storm, Daniel J.","contributorId":341059,"corporation":false,"usgs":false,"family":"Storm","given":"Daniel J.","affiliations":[{"id":6913,"text":"Wisconsin Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":907867,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Roy, Allison H. 0000-0002-8080-2729 aroy@usgs.gov","orcid":"https://orcid.org/0000-0002-8080-2729","contributorId":4240,"corporation":false,"usgs":true,"family":"Roy","given":"Allison","email":"aroy@usgs.gov","middleInitial":"H.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":907868,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Walsh, Daniel P. 0000-0002-7772-2445","orcid":"https://orcid.org/0000-0002-7772-2445","contributorId":219539,"corporation":false,"usgs":true,"family":"Walsh","given":"Daniel","email":"","middleInitial":"P.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":907869,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Pinkerton, Marie E.","contributorId":341060,"corporation":false,"usgs":false,"family":"Pinkerton","given":"Marie","email":"","middleInitial":"E.","affiliations":[{"id":6913,"text":"Wisconsin Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":907870,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Kamath, Pauline L.","contributorId":341061,"corporation":false,"usgs":false,"family":"Kamath","given":"Pauline L.","affiliations":[{"id":7063,"text":"University of Maine","active":true,"usgs":false}],"preferred":false,"id":907871,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70255587,"text":"70255587 - 2024 - Preface to focus section on new frontiers and advances in global seismology","interactions":[],"lastModifiedDate":"2024-06-25T11:52:57.801357","indexId":"70255587","displayToPublicDate":"2024-03-27T06:50:32","publicationYear":"2024","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3372,"text":"Seismological Research Letters","onlineIssn":"1938-2057","printIssn":"0895-0695","active":true,"publicationSubtype":{"id":10}},"title":"Preface to focus section on new frontiers and advances in global seismology","docAbstract":"<div id=\"143126074\" class=\"article-section-wrapper js-article-section js-content-section  \" data-section-parent-id=\"0\"><p>Over the last century, many of the fundamental advances in our understanding of the solid Earth have been underpinned by seismic observations recorded on long‐running networks of globally distributed seismic instruments (e.g., Agnew<span>&nbsp;</span><i>et&nbsp;al.</i>, 1976; Romanowicz<span>&nbsp;</span><i>et&nbsp;al.</i>, 1984; Hanka and Kind, 1994; Peterson and Hutt, 2014; Ringler<span>&nbsp;</span><i>et&nbsp;al.</i>, 2022a). 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