{"pageNumber":"252","pageRowStart":"6275","pageSize":"25","recordCount":165604,"records":[{"id":70249589,"text":"70249589 - 2023 - Tree-ring derived avalanche frequency and climate associations in a high-latitude, maritime climate","interactions":[],"lastModifiedDate":"2023-10-18T12:09:25.06511","indexId":"70249589","displayToPublicDate":"2023-07-28T07:07:00","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":6454,"text":"Journal of Geophysical Research - Earth Surface","active":true,"publicationSubtype":{"id":10}},"title":"Tree-ring derived avalanche frequency and climate associations in a high-latitude, maritime climate","docAbstract":"<div class=\"article-section__content en main\"><p>Snow avalanches are a natural hazard in mountainous areas worldwide with severe impacts that include fatalities, damage to infrastructure, disruption to commerce, and landscape disturbance. Understanding long-term avalanche frequency patterns, and associated climate and weather influences, improves our understanding of how climate change may affect avalanche activity. We used dendrochronological techniques to evaluate the historical frequency of large magnitude avalanches (LMAs) in the high-latitude climate of southeast Alaska, United States. We collected 434 cross sections throughout six avalanche paths near Juneau, Alaska. This resulted in 2706 identified avalanche growth disturbances between 1720 and 2018, which allowed us to reconstruct 82&nbsp;years with LMA activity across three sub-regions. By combining this tree-ring-derived avalanche data set with a suite of climate and atmospheric variables and applying a generalized linear model to fit a binomial regression, we found that February and March precipitation and the Oceanic Niño Index (ONI) were significant predictors of LMA activity in the study area. Specifically, LMA activity occurred during winters with substantial February and March precipitation and neutral or negative (cold) ONI values, while years not characterized by LMAs occur more frequently during warm winters (positive ONI values). Our examination of the climate-avalanche relationship in southeast Alaska sheds light on important climate variables and physical processes associated with LMA years. These results can be used to inform long-term infrastructure planning and avalanche mitigation operations in an urban area, such as Juneau, where critical infrastructure is subject to substantial avalanche hazard.</p></div>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2023JF007154","usgsCitation":"Peitzsch, E.H., Hood, E., Harley, J., Stahle, D.K., Kichas, N., and Wolken, G.J., 2023, Tree-ring derived avalanche frequency and climate associations in a high-latitude, maritime climate: Journal of Geophysical Research - Earth Surface, v. 128, no. 8, e2023JF007154, 21 p., https://doi.org/10.1029/2023JF007154.","productDescription":"e2023JF007154, 21 p.","ipdsId":"IP-150999","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":442616,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1029/2023jf007154","text":"External Repository"},{"id":421955,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -135.53227265479708,\n              59.07858164554776\n            ],\n            [\n              -135.53227265479708,\n              57.73191373947904\n            ],\n            [\n              -133.26908906104717,\n              57.73191373947904\n            ],\n            [\n              -133.26908906104717,\n              59.07858164554776\n            ],\n            [\n              -135.53227265479708,\n              59.07858164554776\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"128","issue":"8","noUsgsAuthors":false,"publicationDate":"2023-08-07","publicationStatus":"PW","contributors":{"authors":[{"text":"Peitzsch, Erich H. 0000-0001-7624-0455","orcid":"https://orcid.org/0000-0001-7624-0455","contributorId":202576,"corporation":false,"usgs":true,"family":"Peitzsch","given":"Erich","middleInitial":"H.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":886333,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hood, Eran","contributorId":106802,"corporation":false,"usgs":false,"family":"Hood","given":"Eran","affiliations":[],"preferred":false,"id":886334,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Harley, John","contributorId":292933,"corporation":false,"usgs":false,"family":"Harley","given":"John","email":"","affiliations":[{"id":16298,"text":"University of Alaska Southeast","active":true,"usgs":false}],"preferred":false,"id":886335,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stahle, Daniel Kent 0000-0003-1252-5990","orcid":"https://orcid.org/0000-0003-1252-5990","contributorId":224403,"corporation":false,"usgs":true,"family":"Stahle","given":"Daniel","email":"","middleInitial":"Kent","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":886336,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Kichas, Nicholas E.","contributorId":261369,"corporation":false,"usgs":false,"family":"Kichas","given":"Nicholas E.","affiliations":[{"id":36555,"text":"Montana State University","active":true,"usgs":false}],"preferred":false,"id":886337,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Wolken, Gabriel J.","contributorId":221149,"corporation":false,"usgs":false,"family":"Wolken","given":"Gabriel","email":"","middleInitial":"J.","affiliations":[{"id":40336,"text":"Alaska Department of Natural Resources: Division of Geological and Geophysical Surveys","active":true,"usgs":false}],"preferred":false,"id":886338,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70255997,"text":"70255997 - 2023 - Long-term assessment of relationships between changing environmental conditions and the physiology of southern Beaufort Sea polar bears (Ursus maritimus)","interactions":[],"lastModifiedDate":"2024-07-12T12:02:44.276503","indexId":"70255997","displayToPublicDate":"2023-07-28T07:00:57","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1837,"text":"Global Change Biology","active":true,"publicationSubtype":{"id":10}},"title":"Long-term assessment of relationships between changing environmental conditions and the physiology of southern Beaufort Sea polar bears (Ursus maritimus)","docAbstract":"<div class=\"abstract-group  metis-abstract\"><div class=\"article-section__content en main\"><p>Climate change is influencing polar bear (<i>Ursus maritimus</i>) habitat, diet, and behavior but the effects of these changes on their physiology is not well understood. Blood-based biomarkers are used to assess the physiologic health of individuals but their usefulness for evaluating population health, especially as it relates to changing environmental conditions, has rarely been explored. We describe links between environmental conditions and physiologic functions of southern Beaufort Sea polar bears using data from blood samples collected from 1984 to 2018, a period marked by extensive environmental change. We evaluated associations between 13 physiologic biomarkers and circumpolar (Arctic oscillation index) and regional (wind patterns and ice-free days) environmental metrics and seasonal and demographic co-variates (age, sex, season, and year) known to affect polar bear ecology. We observed signs of dysregulation of water balance in polar bears following years with a lower annual Arctic oscillation index. In addition, liver enzyme values increased over time, which is suggestive of potential hepatocyte damage as the Arctic has warmed. Biomarkers of immune function increased with regional-scale wind patterns and the number of ice-free days over the Beaufort Sea continental shelf and were lower in years with a lower winter Arctic oscillation index, suggesting an increased allocation of energetic resources for immune processes under these conditions. We propose that the variation in polar bear immune and metabolic function is likely indicative of physiologic plasticity, a response that allows polar bears to remain in homeostasis even as they experience changes in nutrition and habitat in response to changing environments.</p></div></div>","language":"English","publisher":"Wiley","doi":"10.1111/gcb.16883","usgsCitation":"Fry, T., Friedrichs, K.R., Ketz, A.C., Duncan, C.G., Van Deelen, T.R., Goldberg, T., and Atwood, T.C., 2023, Long-term assessment of relationships between changing environmental conditions and the physiology of southern Beaufort Sea polar bears (Ursus maritimus): Global Change Biology, v. 29, no. 19, p. 5524-5539, https://doi.org/10.1111/gcb.16883.","productDescription":"16 p.","startPage":"5524","endPage":"5539","ipdsId":"IP-143938","costCenters":[{"id":65299,"text":"Alaska Science Center Ecosystems","active":true,"usgs":true}],"links":[{"id":442618,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/gcb.16883","text":"Publisher Index Page"},{"id":431002,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -157.85003207134403,\n              72.52898104381669\n            ],\n            [\n              -157.85003207134403,\n              67.97569731187946\n            ],\n            [\n              -139.129328946344,\n              67.97569731187946\n            ],\n            [\n              -139.129328946344,\n              72.52898104381669\n            ],\n            [\n              -157.85003207134403,\n              72.52898104381669\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"29","issue":"19","noUsgsAuthors":false,"publicationDate":"2023-07-28","publicationStatus":"PW","contributors":{"authors":[{"text":"Fry, Tricia","contributorId":222310,"corporation":false,"usgs":false,"family":"Fry","given":"Tricia","affiliations":[{"id":7122,"text":"University of Wisconsin","active":true,"usgs":false}],"preferred":false,"id":906298,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Friedrichs, Kristen R.","contributorId":202228,"corporation":false,"usgs":false,"family":"Friedrichs","given":"Kristen","email":"","middleInitial":"R.","affiliations":[{"id":36375,"text":"Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, 2015 Linden Dr., Madison, WI 53706-1100, USA","active":true,"usgs":false}],"preferred":false,"id":906299,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ketz, Alison C.","contributorId":217310,"corporation":false,"usgs":false,"family":"Ketz","given":"Alison","email":"","middleInitial":"C.","affiliations":[{"id":13606,"text":"CSU","active":true,"usgs":false}],"preferred":false,"id":906300,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Duncan, Colleen G.","contributorId":15512,"corporation":false,"usgs":false,"family":"Duncan","given":"Colleen","email":"","middleInitial":"G.","affiliations":[{"id":6621,"text":"Colorado State University","active":true,"usgs":false}],"preferred":false,"id":906301,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Van Deelen, Timothy R.","contributorId":145413,"corporation":false,"usgs":false,"family":"Van Deelen","given":"Timothy","email":"","middleInitial":"R.","affiliations":[{"id":7122,"text":"University of Wisconsin","active":true,"usgs":false}],"preferred":false,"id":906302,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Goldberg, Tony","contributorId":211788,"corporation":false,"usgs":false,"family":"Goldberg","given":"Tony","affiliations":[{"id":38319,"text":"UW Madison","active":true,"usgs":false}],"preferred":false,"id":906303,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Atwood, Todd C. 0000-0002-1971-3110 tatwood@usgs.gov","orcid":"https://orcid.org/0000-0002-1971-3110","contributorId":4368,"corporation":false,"usgs":true,"family":"Atwood","given":"Todd","email":"tatwood@usgs.gov","middleInitial":"C.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":906304,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70255044,"text":"70255044 - 2023 - Return(s) on investment: Restoration spending in the Columbia River Basin and increased abundance of salmon and steelhead","interactions":[],"lastModifiedDate":"2024-06-13T11:27:19.369957","indexId":"70255044","displayToPublicDate":"2023-07-28T06:25:32","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"Return(s) on investment: Restoration spending in the Columbia River Basin and increased abundance of salmon and steelhead","docAbstract":"<div class=\"abstract toc-section abstract-type-\"><div class=\"abstract-content\"><p>The decline in salmon and steelhead populations in the Columbia River Basin has been well documented, as have the decades-long, $9 billion restoration spending efforts by federal and state agencies. These efforts are mainly tied to Endangered Species Act (ESA) mandates for recovery of wild, naturally-spawning threatened or endangered fish species. The impact of these efforts remains poorly understood; many observers, including the federal courts, have long been concerned by the lack of evidence of recovery. Most studies evaluating restoration efforts have examined individual projects for specific species, reaches, or life stages, which limits the ability to make broad inferences at the basin level. There is a need to ask: is there evidence of an overall increase in wild fish abundance associated with the totality of these recovery efforts? To that end, the current study estimates fixed-effects panel regression models of adult returns of four species. Results indicate that restoration spending combined with hatchery production are associated with substantial increases in returning adult fish. Evidence of benefits to wild fish alone, however, require indirect approaches given the commingling of restoration spending with spending on hatchery releases, the impacts of spending on hatchery fish survival, and the density dependence effects of hatchery releases. To accomplish this, the models’ predicted adult returns (both hatchery and wild fish) attributed to both spending and hatchery releases are compared to independent estimates of returning hatchery fish based on hatchery survival estimates (smolt-to-adult ratios). The comparison finds the model-predicted levels of adult returns due to spending and hatchery releases do not exceed the survival-rate based estimates for hatcheries alone, so that we are unable to reject the hypothesis of no benefits to wild fish from the restoration spending.</p></div></div><div id=\"figure-carousel-section\"><br></div>","language":"English","publisher":"PLoS","doi":"10.1371/journal.pone.0289246","usgsCitation":"Jaeger, W.K., and Scheuerell, M.D., 2023, Return(s) on investment: Restoration spending in the Columbia River Basin and increased abundance of salmon and steelhead: PLoS ONE, v. 21 p., no. 18, e0289246,, https://doi.org/10.1371/journal.pone.0289246.","productDescription":"e0289246,","ipdsId":"IP-152907","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":442621,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0289246","text":"Publisher Index Page"},{"id":430063,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Canada, United States","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -124.29959155624175,\n              37.92729410166777\n            ],\n            [\n              -106.36990405624204,\n              37.92729410166777\n            ],\n            [\n              -106.36990405624204,\n              53.592825725933125\n            ],\n            [\n              -124.29959155624175,\n              53.592825725933125\n            ],\n            [\n              -124.29959155624175,\n              37.92729410166777\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"21 p.","issue":"18","edition":"7","noUsgsAuthors":false,"publicationDate":"2023-07-28","publicationStatus":"PW","contributors":{"authors":[{"text":"Jaeger, William K.","contributorId":338398,"corporation":false,"usgs":false,"family":"Jaeger","given":"William","email":"","middleInitial":"K.","affiliations":[{"id":6680,"text":"Oregon State University","active":true,"usgs":false}],"preferred":false,"id":903242,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Scheuerell, Mark David 0000-0002-8284-1254","orcid":"https://orcid.org/0000-0002-8284-1254","contributorId":288621,"corporation":false,"usgs":true,"family":"Scheuerell","given":"Mark","email":"","middleInitial":"David","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":903243,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70249362,"text":"70249362 - 2023 - Serum virome of southern Beaufort Sea polar bears (Ursus maritimus) during a period of rapid climate change","interactions":[],"lastModifiedDate":"2023-10-05T00:16:31.415738","indexId":"70249362","displayToPublicDate":"2023-07-27T13:06:57","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3919,"text":"Conservation Physiology","onlineIssn":"2051-1434","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Serum virome of southern Beaufort Sea polar bears (<i>Ursus maritimus</i>) during a period of rapid climate change.","title":"Serum virome of southern Beaufort Sea polar bears (Ursus maritimus) during a period of rapid climate change","docAbstract":"<p>Climate change affects the behavior, physiology and life history of many Arctic wildlife species. It can also influence the distribution and ecology of infectious agents. The southern Beaufort Sea (SB) subpopulation of polar bears (<i>Ursus maritimus</i>) has experienced dramatic behavioral changes due to retreating sea ice and other climate-related factors, but the effects of these changes on physiology and infection remain poorly understood. Using serum from polar bears sampled between 2004 and 2015 and metagenomic DNA sequencing, we identified 48 viruses, all of the family <i>Anelloviridae</i>. Anelloviruses are small, ubiquitous infectious agents with circular single-stranded DNA genomes that are not known to cause disease but, in humans, covary in diversity and load with immunological compromise. We therefore examined the usefulness of anelloviruses as biomarkers of polar bear physiological stress related to climate and habitat use. Polar bear anelloviruses sorted into two distinct clades on a phylogenetic tree, both of which also contained anelloviruses of giant pandas (<i>Ailuropoda melanoleuca</i>), another ursid. Neither anellovirus diversity nor load were associated with any demographic variables, behavioral factors or direct physiological measures. However, pairwise genetic distances between anelloviruses were positively correlated with pairwise differences in sampling date, suggesting that the polar bear “anellome”is evolving over time. These findings suggest that anelloviruses are not a sensitive indicator of polar physiological stress, but they do provide a baseline for evaluating future changes to polar bear viromes.</p>","language":"English","publisher":"Oxford University Press","doi":"10.1093/conphys/coad054","usgsCitation":"Fry, T., Owens, L., Ketz, A.C., Atwood, T.C., Dunay, E., and Goldberg, T., 2023, Serum virome of southern Beaufort Sea polar bears (Ursus maritimus) during a period of rapid climate change: Conservation Physiology, v. 11, no. 1, coad054, 14 p., https://doi.org/10.1093/conphys/coad054.","productDescription":"coad054, 14 p.","ipdsId":"IP-148314","costCenters":[{"id":65299,"text":"Alaska Science Center Ecosystems","active":true,"usgs":true}],"links":[{"id":442624,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/conphys/coad054","text":"Publisher Index Page"},{"id":421613,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","otherGeospatial":"Beaufort Sea","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -157.67764395888048,\n              72.16581366653094\n            ],\n            [\n              -157.67764395888048,\n              69.79686987725921\n            ],\n            [\n              -140.10047883466635,\n              69.79686987725921\n            ],\n            [\n              -140.10047883466635,\n              72.16581366653094\n            ],\n            [\n              -157.67764395888048,\n              72.16581366653094\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"11","issue":"1","noUsgsAuthors":false,"publicationDate":"2023-07-27","publicationStatus":"PW","contributors":{"authors":[{"text":"Fry, Tricia","contributorId":222310,"corporation":false,"usgs":false,"family":"Fry","given":"Tricia","affiliations":[{"id":7122,"text":"University of Wisconsin","active":true,"usgs":false}],"preferred":false,"id":885323,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Owens, Leah","contributorId":330569,"corporation":false,"usgs":false,"family":"Owens","given":"Leah","email":"","affiliations":[{"id":12729,"text":"UW","active":true,"usgs":false}],"preferred":false,"id":885324,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ketz, Alison C.","contributorId":217310,"corporation":false,"usgs":false,"family":"Ketz","given":"Alison","email":"","middleInitial":"C.","affiliations":[{"id":13606,"text":"CSU","active":true,"usgs":false}],"preferred":false,"id":885325,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Atwood, Todd C. 0000-0002-1971-3110 tatwood@usgs.gov","orcid":"https://orcid.org/0000-0002-1971-3110","contributorId":4368,"corporation":false,"usgs":true,"family":"Atwood","given":"Todd","email":"tatwood@usgs.gov","middleInitial":"C.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":885326,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dunay, Emily","contributorId":330570,"corporation":false,"usgs":false,"family":"Dunay","given":"Emily","email":"","affiliations":[{"id":12729,"text":"UW","active":true,"usgs":false}],"preferred":false,"id":885327,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Goldberg, Tony","contributorId":211788,"corporation":false,"usgs":false,"family":"Goldberg","given":"Tony","affiliations":[{"id":38319,"text":"UW Madison","active":true,"usgs":false}],"preferred":false,"id":885328,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70247520,"text":"70247520 - 2023 - The transmission patterns of the endosymbiont Wolbachia within the Hawaiian Drosophilidae adaptive radiation","interactions":[],"lastModifiedDate":"2023-08-11T13:26:41.062961","indexId":"70247520","displayToPublicDate":"2023-07-27T07:04:53","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5837,"text":"Genes and Genomics","onlineIssn":"2092-9293","printIssn":"1976-9571","active":true,"publicationSubtype":{"id":10}},"displayTitle":"The transmission patterns of the endosymbiont <i>Wolbachia</i> within the Hawaiian Drosophilidae adaptive radiation","title":"The transmission patterns of the endosymbiont Wolbachia within the Hawaiian Drosophilidae adaptive radiation","docAbstract":"<div class=\"html-p\">The evolution of endosymbionts and their hosts can lead to highly dynamic interactions with varying fitness effects for both the endosymbiont and host species.<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span>, a ubiquitous endosymbiont of arthropods and nematodes, can have both beneficial and detrimental effects on host fitness. We documented the occurrence and patterns of transmission of<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>within the Hawaiian Drosophilidae and examined the potential contributions of<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>to the rapid diversification of their hosts. Screens for<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>infections across a minimum of 140 species of Hawaiian<span>&nbsp;</span><span class=\"html-italic\">Drosophila</span><span>&nbsp;</span>and<span>&nbsp;</span><span class=\"html-italic\">Scaptomyza</span><span>&nbsp;</span>revealed species-level infections of 20.0%, and across all 399 samples, a general infection rate of 10.3%. Among the 44<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>strains we identified using a modified<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>multi-locus strain typing scheme, 30 (68.18%) belonged to supergroup B, five (11.36%) belonged to supergroup A, and nine (20.45%) had alleles with conflicting supergroup assignments. Co-phylogenetic reconciliation analysis indicated that<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>strain diversity within their endemic Hawaiian Drosophilidae hosts can be explained by vertical (e.g., co-speciation) and horizontal (e.g., host switch) modes of transmission. Results from stochastic character trait mapping suggest that horizontal transmission is associated with the preferred oviposition substrate of the host, but not the host’s plant family or island of occurrence. For Hawaiian Drosophilid species of conservation concern, with 13 species listed as endangered and 1 listed as threatened, knowledge of<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>strain types, infection status, and potential for superinfection could assist with conservation breeding programs designed to bolster population sizes, especially when wild populations are supplemented with laboratory-reared, translocated individuals. Future research aimed at improving the understanding of the mechanisms of<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>transmission in nature, their impact on the host, and their role in host species formation may shed light on the influence of<span>&nbsp;</span><span class=\"html-italic\">Wolbachia</span><span>&nbsp;</span>as an evolutionary driver, especially in Hawaiian ecosystems.</div>","language":"English","publisher":"MDPI","doi":"10.3390/genes14081545","usgsCitation":"Corpuz, R.L., Bellinger, M.R., Veillet, A., Magnacca, K.N., and Price, D.K., 2023, The transmission patterns of the endosymbiont Wolbachia within the Hawaiian Drosophilidae adaptive radiation: Genes and Genomics, v. 14, no. 8, 1545, 23 p., https://doi.org/10.3390/genes14081545.","productDescription":"1545, 23 p.","ipdsId":"IP-153520","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":442628,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/genes14081545","text":"Publisher Index Page"},{"id":419698,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"14","issue":"8","noUsgsAuthors":false,"publicationDate":"2023-07-27","publicationStatus":"PW","contributors":{"authors":[{"text":"Corpuz, Renee L.","contributorId":318229,"corporation":false,"usgs":false,"family":"Corpuz","given":"Renee","email":"","middleInitial":"L.","affiliations":[{"id":37485,"text":"University of Hawai‘i - Hilo","active":true,"usgs":false}],"preferred":false,"id":879977,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bellinger, Mona Renee 0000-0001-5274-9572","orcid":"https://orcid.org/0000-0001-5274-9572","contributorId":301018,"corporation":false,"usgs":true,"family":"Bellinger","given":"Mona","email":"","middleInitial":"Renee","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"preferred":true,"id":879978,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Veillet, Anne","contributorId":196674,"corporation":false,"usgs":false,"family":"Veillet","given":"Anne","email":"","affiliations":[],"preferred":false,"id":879979,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Magnacca, Karl N.","contributorId":173504,"corporation":false,"usgs":false,"family":"Magnacca","given":"Karl","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":879980,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Price, Donald K. 0000-0003-2501-8373","orcid":"https://orcid.org/0000-0003-2501-8373","contributorId":302769,"corporation":false,"usgs":false,"family":"Price","given":"Donald","email":"","middleInitial":"K.","affiliations":[{"id":65554,"text":"School of Life Sciences, University of Nevada, Las Vegas, NV","active":true,"usgs":false}],"preferred":false,"id":879981,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70248316,"text":"70248316 - 2023 - Landscape diversity promotes stable food-web architectures in large rivers","interactions":[],"lastModifiedDate":"2023-10-23T16:06:07.528986","indexId":"70248316","displayToPublicDate":"2023-07-27T06:49:50","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1466,"text":"Ecology Letters","active":true,"publicationSubtype":{"id":10}},"title":"Landscape diversity promotes stable food-web architectures in large rivers","docAbstract":"<div class=\"abstract-group \"><div class=\"article-section__content en main\"><p>Uncovering relationships between landscape diversity and species interactions is crucial for predicting how ongoing land-use change and homogenization will impact the stability and persistence of communities. However, such connections have rarely been quantified in nature. We coupled high-resolution river sonar imaging with annualized energetic food webs to quantify relationships among habitat diversity, energy flux, and trophic interaction strengths in large-river food-web modules that support the endangered Pallid Sturgeon. Our results demonstrate a clear relationship between habitat diversity and species interaction strengths, with more diverse foraging landscapes containing higher production of prey and a greater proportion of weak and potentially stabilizing interactions. Additionally, rare patches of large and relatively stable river sediments intensified these effects and further reduced interaction strengths by increasing prey diversity. Our findings highlight the importance of landscape characteristics in promoting stabilizing food-web architectures and provide direct relevance for future management of imperilled species in a simplified and rapidly changing world.</p></div></div>","language":"English","publisher":"Wiley","doi":"10.1111/ele.14289","usgsCitation":"Scholl, E.A., Cross, W., Guy, C.S., Dutton, A.J., and Junker, J.R., 2023, Landscape diversity promotes stable food-web architectures in large rivers: Ecology Letters, v. 26, no. 10, p. 1740-1751, https://doi.org/10.1111/ele.14289.","productDescription":"12 p.","startPage":"1740","endPage":"1751","ipdsId":"IP-147352","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":442630,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/ele.14289","text":"Publisher Index Page"},{"id":420611,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"http://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"26","issue":"10","noUsgsAuthors":false,"publicationDate":"2023-07-27","publicationStatus":"PW","contributors":{"authors":[{"text":"Scholl, Eric Arthur 0000-0003-3028-9979","orcid":"https://orcid.org/0000-0003-3028-9979","contributorId":329480,"corporation":false,"usgs":true,"family":"Scholl","given":"Eric","email":"","middleInitial":"Arthur","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":882405,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Cross, Wyatt F.","contributorId":237773,"corporation":false,"usgs":false,"family":"Cross","given":"Wyatt F.","affiliations":[{"id":47607,"text":"Department of Ecology, Montana State University, Bozeman, MT","active":true,"usgs":false}],"preferred":false,"id":882406,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Guy, Christopher S. 0000-0002-9936-4781 cguy@usgs.gov","orcid":"https://orcid.org/0000-0002-9936-4781","contributorId":2876,"corporation":false,"usgs":true,"family":"Guy","given":"Christopher","email":"cguy@usgs.gov","middleInitial":"S.","affiliations":[{"id":5062,"text":"Office of the Chief Scientist for Ecosystems","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":882407,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Dutton, Addie J.","contributorId":329482,"corporation":false,"usgs":false,"family":"Dutton","given":"Addie","email":"","middleInitial":"J.","affiliations":[{"id":36986,"text":"Michigan Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":882408,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Junker, James R.","contributorId":329484,"corporation":false,"usgs":false,"family":"Junker","given":"James","email":"","middleInitial":"R.","affiliations":[{"id":78607,"text":"Great Lakes Research Center, Michigan Technological University","active":true,"usgs":false}],"preferred":false,"id":882409,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70247800,"text":"70247800 - 2023 - Performance evaluation of a channel rehabilitation project on the Lower Missouri River and implications for the dispersal of larval pallid sturgeon","interactions":[],"lastModifiedDate":"2023-08-18T11:49:14.528249","indexId":"70247800","displayToPublicDate":"2023-07-27T06:43:25","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1454,"text":"Ecological Engineering","active":true,"publicationSubtype":{"id":10}},"title":"Performance evaluation of a channel rehabilitation project on the Lower Missouri River and implications for the dispersal of larval pallid sturgeon","docAbstract":"<div id=\"abstracts\" class=\"Abstracts u-font-gulliver text-s\"><div id=\"ab0005\" class=\"abstract author\" lang=\"en\"><div id=\"as0005\"><p id=\"sp0070\"><span>In the Lower Missouri River, extensive channel modifications have altered hydraulic and morphologic conditions and reduced the river's ecological integrity. One species that has been adversely affected by these changes is the pallid&nbsp;sturgeon&nbsp;(</span><span><i>Scaphirhynchus albus</i></span><span>). Mainstem dams on the Missouri River restrict the upstream migration of adults and limit the downstream dispersal of larvae. Channelization to facilitate commercial barge traffic has also simplified the river. The self-dredging&nbsp;navigation channel&nbsp;is a highly efficient conduit for transporting sand, which has resulted in diminished rearing habitat along the lower river. Recently, a series of experimental projects was implemented to reengineer selected bends of the Lower Missouri River with the goal of increasing the interception and retention of passively drifting age-0 sturgeon into habitats more conducive to rearing. Here, we evaluate the hydraulic performance of one of these rehabilitation projects to gain insight on the implications of these interventions for age-0 pallid sturgeon dispersal. We conducted a dye-trace experiment and complementary hydraulic and particle-tracking modeling to examine the spatial and temporal patterns of passive dispersal in and around the rehabilitated study reach. Results from both the dye-trace experiment and particle-tracking model highlight the presence of several interception pathways from the navigation channel into more suitable rearing habitat on channel margins. Moreover, our results indicate that residence times within the rearing habitat are increased in comparison to the main channel. Although we cannot provide biological evaluation at this time to assess whether the rehabilitated study bend intercepts passively drifting age-0 pallid sturgeon, our analysis shows that hydraulic conditions within the rehabilitated bend would favor interception and retention of passively drifting particles (or, presumably, larvae) from the navigation channel and into slower moving, shallow-water habitat. Moreover, our particle-tracking model provides a new capability to explore important&nbsp;biological transport&nbsp;processes across a range of flows, organisms, and river environments.</span></p></div></div></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.ecoleng.2023.107045","usgsCitation":"Sansom, B.J., Call, B., Legleiter, C.J., and Jacobson, R., 2023, Performance evaluation of a channel rehabilitation project on the Lower Missouri River and implications for the dispersal of larval pallid sturgeon: Ecological Engineering, v. 194, 107045, 16 p., https://doi.org/10.1016/j.ecoleng.2023.107045.","productDescription":"107045, 16 p.","ipdsId":"IP-151642","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":442633,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.ecoleng.2023.107045","text":"Publisher Index Page"},{"id":435239,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9QOZM1N","text":"USGS data release","linkHelpText":"Supporting files for particle tracking simulations of the May 5, 2021 dye release experiment on the Missouri River at Searcys Bend, near Columbia, Missouri"},{"id":419921,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","otherGeospatial":"Lower  Missouri River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -92.55448393453149,\n              38.965526016477156\n            ],\n            [\n              -92.55448393453149,\n              38.816310771987105\n            ],\n            [\n              -92.4068810599055,\n              38.816310771987105\n            ],\n            [\n              -92.4068810599055,\n              38.965526016477156\n            ],\n            [\n              -92.55448393453149,\n              38.965526016477156\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"194","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Sansom, Brandon James 0000-0001-7999-9547","orcid":"https://orcid.org/0000-0001-7999-9547","contributorId":289636,"corporation":false,"usgs":true,"family":"Sansom","given":"Brandon","email":"","middleInitial":"James","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":880496,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Call, Bruce 0000-0001-9064-2231","orcid":"https://orcid.org/0000-0001-9064-2231","contributorId":217707,"corporation":false,"usgs":true,"family":"Call","given":"Bruce","email":"","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":880497,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Legleiter, Carl J. 0000-0003-0940-8013 cjl@usgs.gov","orcid":"https://orcid.org/0000-0003-0940-8013","contributorId":169002,"corporation":false,"usgs":true,"family":"Legleiter","given":"Carl","email":"cjl@usgs.gov","middleInitial":"J.","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true},{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true}],"preferred":true,"id":880498,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Jacobson, R. B. 0000-0002-8368-2064","orcid":"https://orcid.org/0000-0002-8368-2064","contributorId":92614,"corporation":false,"usgs":true,"family":"Jacobson","given":"R. B.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":880499,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70247370,"text":"70247370 - 2023 - Migration timing and tributary use of spawning flannelmouth sucker (Catostomus latipinnis)","interactions":[],"lastModifiedDate":"2023-11-20T17:34:04.986295","indexId":"70247370","displayToPublicDate":"2023-07-26T15:08:17","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2285,"text":"Journal of Fish Biology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Migration timing and tributary use of spawning flannelmouth sucker (<i>Catostomus latipinnis </i>)","title":"Migration timing and tributary use of spawning flannelmouth sucker (Catostomus latipinnis)","docAbstract":"<p><span>Spawning phenology and associated migrations of fishes are often regulated by factors such as temperature and stream discharge, but flow regulation of mainstem rivers coupled with climate change might disrupt these cues and affect fitness. Flannelmouth sucker (Catostomus latipinnis) persisting in heavily modified river networks are known to spawn in tributaries that might provide better spawning habitat than neighboring mainstem rivers subject to habitat degradation (e.g., embedded sediments, altered thermal regimes, and disconnected floodplains). Passive integrative transponder (PIT) tag data and radio telemetry were used to quantify the timing and duration of flannelmouth sucker tributary spawning migrations in relation to environmental cues in McElmo Creek, a tributary to the San Juan River in the American Southwest. We also tested the extent of the tributary migration and assessed mainstem movements prior to and following tributary migrations. Additionally, multi-year datasets of PIT detections from other tributaries in the Colorado River basin were used to quantify interannual and cross-site variation in the timing of flannelmouth sucker spawning migrations in relation to environmental cues. The arrival and residence times of fish spawning in McElmo Creek varied among years with earlier migration and a three-week increase in residence time in relatively wet years compared to drier years. Classification tree analysis suggested a combination of discharge and temperature determined arrival timing. Of fish PIT tagged in the fall, 56% tagged within 10 km of McElmo Creek spawned in the tributary the following spring, as did 60% of radio-tagged fish, with a decline in its use corresponding to increased distance of tagging location. A broader analysis of four tributaries in the Colorado River basin, including McElmo Creek, found photoperiod and temperature of tributary and mainstem rivers were the most important variables in determining migration timing, but tributary and mainstem discharge also aided in classification success. The largest tributary, the Little Colorado River, had more residential fish or fish that stayed for longer periods (median = 30 days), while McElmo Creek fish stayed an average of just 10 days in 2022. Our results generally suggest that higher discharge, across years or across sites, results in extended use of tributaries by flannelmouth suckers. Conservation actions that limit water extraction and maintain natural flow regimes in tributaries, while maintaining open connection with mainstem rivers may benefit migratory species including flannelmouth suckers.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/jfb.15509","usgsCitation":"Bonjour, S.M., Gido, K.B., McKinstry, M.C., Cathcart, C.N., Bogaard, M.R., Dzul, M.C., Healy, B.D., Hooley-Underwood, Z.E., Rogowski, D.L., and Yackulic, C., 2023, Migration timing and tributary use of spawning flannelmouth sucker (Catostomus latipinnis): Journal of Fish Biology, v. 103, no. 5, p. 1144-1162, https://doi.org/10.1111/jfb.15509.","productDescription":"19 p.","startPage":"1144","endPage":"1162","ipdsId":"IP-148081","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true},{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":419436,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"103","issue":"5","noUsgsAuthors":false,"publicationDate":"2023-08-13","publicationStatus":"PW","contributors":{"authors":[{"text":"Bonjour, Sophia M.","contributorId":317812,"corporation":false,"usgs":false,"family":"Bonjour","given":"Sophia","email":"","middleInitial":"M.","affiliations":[{"id":12661,"text":"Kansas State University","active":true,"usgs":false}],"preferred":false,"id":879348,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Gido, Keith B.","contributorId":317813,"corporation":false,"usgs":false,"family":"Gido","given":"Keith","email":"","middleInitial":"B.","affiliations":[{"id":12661,"text":"Kansas State University","active":true,"usgs":false}],"preferred":false,"id":879349,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"McKinstry, Mark C.","contributorId":301155,"corporation":false,"usgs":false,"family":"McKinstry","given":"Mark","email":"","middleInitial":"C.","affiliations":[{"id":65322,"text":"Upper Colorado Regional Office","active":true,"usgs":false}],"preferred":false,"id":879350,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Cathcart, Charles N.","contributorId":317814,"corporation":false,"usgs":false,"family":"Cathcart","given":"Charles","email":"","middleInitial":"N.","affiliations":[{"id":7058,"text":"Alaska Department of Fish and Game","active":true,"usgs":false}],"preferred":false,"id":879351,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bogaard, Matthew R.","contributorId":317815,"corporation":false,"usgs":false,"family":"Bogaard","given":"Matthew","email":"","middleInitial":"R.","affiliations":[{"id":12438,"text":"Washington Department of Fish and Wildlife","active":true,"usgs":false}],"preferred":false,"id":879352,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Dzul, Maria C. 0000-0002-4798-5930 mdzul@usgs.gov","orcid":"https://orcid.org/0000-0002-4798-5930","contributorId":5469,"corporation":false,"usgs":true,"family":"Dzul","given":"Maria","email":"mdzul@usgs.gov","middleInitial":"C.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":879353,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Healy, Brian D. 0000-0002-4402-638X","orcid":"https://orcid.org/0000-0002-4402-638X","contributorId":304257,"corporation":false,"usgs":true,"family":"Healy","given":"Brian","middleInitial":"D.","affiliations":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":879354,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Hooley-Underwood, Zachary E.","contributorId":317816,"corporation":false,"usgs":false,"family":"Hooley-Underwood","given":"Zachary","email":"","middleInitial":"E.","affiliations":[{"id":39887,"text":"Colorado Parks and Wildlife","active":true,"usgs":false}],"preferred":false,"id":879355,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Rogowski, David L.","contributorId":175084,"corporation":false,"usgs":false,"family":"Rogowski","given":"David","email":"","middleInitial":"L.","affiliations":[{"id":27527,"text":"AZ Game and FIsh Department","active":true,"usgs":false}],"preferred":false,"id":879356,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Yackulic, Charles B. 0000-0001-9661-0724","orcid":"https://orcid.org/0000-0001-9661-0724","contributorId":218825,"corporation":false,"usgs":true,"family":"Yackulic","given":"Charles","middleInitial":"B.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":879357,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70246988,"text":"ofr20231045 - 2023 - LANDFIRE technical documentation","interactions":[],"lastModifiedDate":"2026-02-11T21:26:11.184045","indexId":"ofr20231045","displayToPublicDate":"2023-07-26T12:31:40","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2023-1045","displayTitle":"LANDFIRE Technical Documentation","title":"LANDFIRE technical documentation","docAbstract":"<h1>Executive Summary</h1><p>LANDFIRE (LF) completed the LF 2016 Remap effort in 2021, the biggest revision of its product suite since its inception. This document serves to describe the processes that went into this effort and elucidate the methods for creating each LF product. Although the document focuses on the LF 2016 Remap effort, it also details the two updates that have been completed since that effort, LF 2019 Limited (released June 2021) and LF 2020 (underway at the writing of this document).</p><p>The LF program is complex, requiring a team of interdisciplinary professionals to manage, produce, and maintain it. LF data production falls under six primary categories: reference, disturbance, vegetation, fuels, fire regime, and topography. Several data production units have the dual goals of producing a valuable stand-alone dataset and serving subsequent LF production needs. This document delves into the technical details of the six primary categories individually while also describing the connections to other LF products. Importantly, this LF technical documentation provides a transparent view of actual LF data layer production processes and can become a general information source for future production, production improvements, user questions, and leadership reference.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20231045","usgsCitation":"La Puma, I.P., ed., 2023, LANDFIRE technical documentation: U.S. Geological Survey Open-File Report 2023–1045, 103 p., https://doi.org/10.3133/ofr20231045.","productDescription":"Report: xii, 103 p.; 2 Data Releases","numberOfPages":"120","onlineOnly":"Y","ipdsId":"IP-139238","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":419200,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7ZS2TM0","text":"USGS data release","linkHelpText":"GAP/LANDFIRE National Terrestrial Ecosystems 2011"},{"id":419201,"rank":4,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P955KPLE","text":"USGS data release","linkHelpText":"Protected Areas Database of the United States (PAD-US)"},{"id":419198,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2023/1045/coverthb.jpg"},{"id":419199,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2023/1045/ofr20231045.pdf","text":"Report","size":"9.6 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2023–1045"},{"id":499782,"rank":5,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_115017.htm","linkFileType":{"id":5,"text":"html"}}],"country":"United States","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"geometry\": {\n        \"type\": \"MultiPolygon\",\n        \"coordinates\": [\n          [\n            [\n              [\n                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Introduction</li><li>Chapter B. LANDFIRE Reference Data</li><li>Chapter C. Disturbance Mapping</li><li>Chapter D. Vegetation Mapping</li><li>Chapter E. Fuels Mapping</li><li>Chapter F. Fire Regime</li><li>Chapter G. Topographic Information</li><li>Appendix 1. Vegetation Mapping</li><li>Appendix 2. Fuels Mapping</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2023-07-26","noUsgsAuthors":false,"publicationDate":"2023-07-26","publicationStatus":"PW","contributors":{"editors":[{"text":"La Puma, Inga P. 0000-0002-6865-820X","orcid":"https://orcid.org/0000-0002-6865-820X","contributorId":206011,"corporation":false,"usgs":false,"family":"La Puma","given":"Inga","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":878479,"contributorType":{"id":2,"text":"Editors"},"rank":1}]}}
,{"id":70247099,"text":"fs20233027 - 2023 - Assessment of undiscovered conventional oil and gas resources in the offshore Salt Basin area of Morocco, 2021","interactions":[],"lastModifiedDate":"2023-10-30T19:33:47.523083","indexId":"fs20233027","displayToPublicDate":"2023-07-26T11:50:00","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2023-3027","displayTitle":"Assessment of Undiscovered Conventional Oil and Gas Resources in the Offshore Salt Basin Area of Morocco, 2021","title":"Assessment of undiscovered conventional oil and gas resources in the offshore Salt Basin area of Morocco, 2021","docAbstract":"<p>Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean resources of 3.8 billion barrels of oil and 20.7 trillion cubic feet of gas offshore of Morocco.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20233027","programNote":"National and Global Petroleum Assessment","usgsCitation":"Schenk, C.J., Mercier, T.J., Woodall, C.A., Le, P.A., Cicero, A.D., Drake, R.M., II, Ellis, G.S., Finn, T.M., Gardner, M.H., Gelman, S.E., Hearon, J.S., Johnson, B.G., Lagesse, J.H., Leathers-Miller, H.M., Marra, K.R., Timm, K.K., and Young, S.S., 2023, Assessment of undiscovered conventional oil and gas resources in the offshore Salt Basin area of Morocco, 2021:  U.S. Geological Survey Fact Sheet 2023–3027, 2 p., https://doi.org/10.3133/fs20233027.","productDescription":"Report: 2 p.; Data Release","onlineOnly":"Y","ipdsId":"IP-142574","costCenters":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":419367,"rank":6,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/fs20233027/full","text":"Report","linkFileType":{"id":5,"text":"html"},"description":"FS 2023-3027"},{"id":419366,"rank":5,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/fs/2023/3027/fs20233027.xml"},{"id":419256,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P92Q4MG9","text":"USGS data release","linkHelpText":"USGS National and Global Oil and Gas Assessment Project—Offshore Morocco: Assessment Unit Boundaries, Assessment Input Data, and Fact Sheet Data Tables"},{"id":419255,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/fs/2023/3027/fs20233027.pdf","text":"Report","size":"724 kB","linkFileType":{"id":1,"text":"pdf"},"description":"FS 2023-3027"},{"id":419254,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/fs/2023/3027/coverthb.jpg"},{"id":419365,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/fs/2023/3027/images"}],"country":"Morocco","otherGeospatial":"Offshore Salt Basin Area","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -16.764958225284346,\n              28.97467751691741\n            ],\n            [\n              -5.344077136262143,\n              28.97467751691741\n            ],\n            [\n              -5.344077136262143,\n              37.240228139496494\n            ],\n            [\n              -16.764958225284346,\n              37.240228139496494\n            ],\n            [\n              -16.764958225284346,\n              28.97467751691741\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/central-energy-resources-science-center\" data-mce-href=\"https://www.usgs.gov/centers/central-energy-resources-science-center\">Central Energy Resources Science Center</a><br>U.S. Geological Survey<br>Box 25046, MS-939<br>Denver, CO 80225-0046</p><p><a href=\"https://pubs.er.usgs.gov/contact\" data-mce-href=\"https://pubs.er.usgs.gov/contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Introduction</li><li>Total Petroleum System and Assessment Unit</li><li>Undiscovered Resources Summary</li><li>References Cited</li></ul>","publishedDate":"2023-07-26","noUsgsAuthors":false,"publicationDate":"2023-07-26","publicationStatus":"PW","contributors":{"authors":[{"text":"Schenk, Christopher J. 0000-0002-0248-7305 schenk@usgs.gov","orcid":"https://orcid.org/0000-0002-0248-7305","contributorId":826,"corporation":false,"usgs":true,"family":"Schenk","given":"Christopher","email":"schenk@usgs.gov","middleInitial":"J.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true},{"id":255,"text":"Energy Resources Program","active":true,"usgs":true}],"preferred":true,"id":878882,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mercier, Tracey J. 0000-0002-8232-525X","orcid":"https://orcid.org/0000-0002-8232-525X","contributorId":255366,"corporation":false,"usgs":true,"family":"Mercier","given":"Tracey J.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878883,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Woodall, Cheryl A. 0000-0002-4844-5768 cwoodall@usgs.gov","orcid":"https://orcid.org/0000-0002-4844-5768","contributorId":194924,"corporation":false,"usgs":true,"family":"Woodall","given":"Cheryl","email":"cwoodall@usgs.gov","middleInitial":"A.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878884,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Le, Phuong A. 0000-0003-2477-509X","orcid":"https://orcid.org/0000-0003-2477-509X","contributorId":255367,"corporation":false,"usgs":true,"family":"Le","given":"Phuong A.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878885,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Cicero, Andrea D. 0000-0003-3632-304X","orcid":"https://orcid.org/0000-0003-3632-304X","contributorId":270005,"corporation":false,"usgs":true,"family":"Cicero","given":"Andrea","email":"","middleInitial":"D.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878886,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Drake, Ronald M. II 0000-0002-1770-4667","orcid":"https://orcid.org/0000-0002-1770-4667","contributorId":206291,"corporation":false,"usgs":true,"family":"Drake","given":"Ronald M.","suffix":"II","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878887,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Ellis, Geoffrey S. 0000-0003-4519-3320 gsellis@usgs.gov","orcid":"https://orcid.org/0000-0003-4519-3320","contributorId":1058,"corporation":false,"usgs":true,"family":"Ellis","given":"Geoffrey","email":"gsellis@usgs.gov","middleInitial":"S.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878888,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Finn, Thomas M. 0000-0001-6396-9351 finn@usgs.gov","orcid":"https://orcid.org/0000-0001-6396-9351","contributorId":778,"corporation":false,"usgs":true,"family":"Finn","given":"Thomas","email":"finn@usgs.gov","middleInitial":"M.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878889,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Gardner, Michael H. 0000-0003-1095-7247","orcid":"https://orcid.org/0000-0003-1095-7247","contributorId":270006,"corporation":false,"usgs":true,"family":"Gardner","given":"Michael","email":"","middleInitial":"H.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878890,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Gelman, Sarah E. 0000-0003-2549-9509","orcid":"https://orcid.org/0000-0003-2549-9509","contributorId":270004,"corporation":false,"usgs":true,"family":"Gelman","given":"Sarah","email":"","middleInitial":"E.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878891,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Hearon, Jane S. 0000-0002-1370-8169","orcid":"https://orcid.org/0000-0002-1370-8169","contributorId":270007,"corporation":false,"usgs":true,"family":"Hearon","given":"Jane","email":"","middleInitial":"S.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878892,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Johnson, Benjamin G. 0000-0002-9462-9322","orcid":"https://orcid.org/0000-0002-9462-9322","contributorId":270008,"corporation":false,"usgs":true,"family":"Johnson","given":"Benjamin","email":"","middleInitial":"G.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878893,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Lagesse, Jenny H. 0000-0002-3541-4751","orcid":"https://orcid.org/0000-0002-3541-4751","contributorId":248367,"corporation":false,"usgs":true,"family":"Lagesse","given":"Jenny","email":"","middleInitial":"H.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878894,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Leathers-Miller, Heidi M. 0000-0001-5208-9906","orcid":"https://orcid.org/0000-0001-5208-9906","contributorId":210000,"corporation":false,"usgs":true,"family":"Leathers-Miller","given":"Heidi M.","affiliations":[{"id":5078,"text":"Southwest Regional Director's Office","active":true,"usgs":true},{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878895,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Marra, Kristen R. 0000-0001-8027-5255 kmarra@usgs.gov","orcid":"https://orcid.org/0000-0001-8027-5255","contributorId":4844,"corporation":false,"usgs":true,"family":"Marra","given":"Kristen","email":"kmarra@usgs.gov","middleInitial":"R.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878896,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Timm, Kira K. 0000-0002-7439-4626","orcid":"https://orcid.org/0000-0002-7439-4626","contributorId":270009,"corporation":false,"usgs":true,"family":"Timm","given":"Kira","email":"","middleInitial":"K.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878897,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Young, Scott S. 0000-0002-8518-4018","orcid":"https://orcid.org/0000-0002-8518-4018","contributorId":270010,"corporation":false,"usgs":true,"family":"Young","given":"Scott","email":"","middleInitial":"S.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":878898,"contributorType":{"id":1,"text":"Authors"},"rank":17}]}}
,{"id":70247328,"text":"70247328 - 2023 - Accurate maps of reef-scale bathymetry with synchronized underwater cameras and GNSS","interactions":[],"lastModifiedDate":"2023-07-27T16:21:43.136065","indexId":"70247328","displayToPublicDate":"2023-07-26T11:14:26","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3250,"text":"Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Accurate maps of reef-scale bathymetry with synchronized underwater cameras and GNSS","docAbstract":"<p><span>We investigate the utility of towed underwater camera systems with tightly coupled Global Navigation Satellite System (GNSS) positions to provide reef-scale bathymetric models with millimeter to centimeter resolutions and accuracies with Structure-from-Motion (SfM) photogrammetry. Successful development of these techniques would allow for detailed assessments of benthic conditions, including the accretion and erosion of reefs and adjacent sediment deposits, without the need for ground control points. We use a multi-camera system towed by a small vessel to map over 70,000 m</span><sup>2</sup><span>&nbsp;of complex shallow (2–8 m water depth) bedrock reef, boulder fields, and fine (sand and gravel) sediments of Lake Tahoe, California. We find that multiple synchronized cameras increase overall mapping coverage and allow for wider survey line spacing. The accuracy of the techniques was sub-millimeter for local length measurements less than a meter, and the bathymetric reproducibility was found to scale with the accuracy of GNSS (3–5 cm), although this could be improved to sub-centimeter with the inclusion of one or more co-registered, but unsurveyed, control points. For future applications, we provide guidance on conducting field operations, correcting underwater image color, and optimizing the SfM workflows. We conclude that a GNSS-coupled underwater camera array is a promising technique to map shallow reefs at high accuracy and resolution without ground control.</span></p>","language":"English","publisher":"MDPI","doi":"10.3390/rs15153727","usgsCitation":"Hatcher, G., Warrick, J.A., Kranenburg, C.J., and Ritchie, A.C., 2023, Accurate maps of reef-scale bathymetry with synchronized underwater cameras and GNSS: Remote Sensing, v. 15, no. 15, 3727, 21 p., https://doi.org/10.3390/rs15153727.","productDescription":"3727, 21 p.","ipdsId":"IP-153460","costCenters":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":442635,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/rs15153727","text":"Publisher Index Page"},{"id":419399,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Lake Tahoe","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -120.0917,\n              39.1875\n            ],\n            [\n              -120.1047,\n              39.1875\n            ],\n            [\n              -120.1047,\n              39.175\n            ],\n            [\n              -120.0917,\n              39.175\n            ],\n            [\n              -120.0917,\n              39.1875\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"15","issue":"15","noUsgsAuthors":false,"publicationDate":"2023-07-26","publicationStatus":"PW","contributors":{"authors":[{"text":"Hatcher, Gerald A. 0000-0001-7705-1509","orcid":"https://orcid.org/0000-0001-7705-1509","contributorId":67586,"corporation":false,"usgs":true,"family":"Hatcher","given":"Gerald A.","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":false,"id":879227,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Warrick, Jonathan A. 0000-0002-0205-3814 jwarrick@usgs.gov","orcid":"https://orcid.org/0000-0002-0205-3814","contributorId":167736,"corporation":false,"usgs":true,"family":"Warrick","given":"Jonathan","email":"jwarrick@usgs.gov","middleInitial":"A.","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":879228,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kranenburg, Christine J. 0000-0002-2955-0167 ckranenburg@usgs.gov","orcid":"https://orcid.org/0000-0002-2955-0167","contributorId":169234,"corporation":false,"usgs":true,"family":"Kranenburg","given":"Christine","email":"ckranenburg@usgs.gov","middleInitial":"J.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":879229,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ritchie, Andrew C. aritchie@usgs.gov","contributorId":4984,"corporation":false,"usgs":true,"family":"Ritchie","given":"Andrew","email":"aritchie@usgs.gov","middleInitial":"C.","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":879230,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70247391,"text":"70247391 - 2023 - Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock","interactions":[],"lastModifiedDate":"2023-08-02T14:53:36.421758","indexId":"70247391","displayToPublicDate":"2023-07-26T09:43:09","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2792,"text":"Movement Ecology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Movement and behavioral states of common carp (<i>Cyprinus carpio</i>) in response to a behavioral deterrent in a navigational lock","title":"Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock","docAbstract":"<p><span>Freshwater ecosystems are some of the most affected by biological invasions due, in part, to the introduction of invasive carp worldwide. Where carp have become established, management programs often seek to limit further range expansion into new areas by reducing their movement through interconnected rivers and waterways. Lock and dams are important locations for non-physical deterrents, such as carbon dioxide (CO</span><sub>2</sub><span>), to reduce unwanted fish passage without disrupting human use. The purpose of this study was to evaluate the behavioral responses of common carp (</span><i>Cyprinus carpio</i><span>) to non-physical deterrents within a navigation structure on the Fox River, Wisconsin. Acoustic telemetry combined with hidden Markov models (HMMs) was used to analyze variation in carp responses to treatments. Outcomes may inform CO</span><sub>2</sub><span>&nbsp;effectiveness at preventing invasive carp movement through movement pinch-points.</span></p>","language":"English","publisher":"Springer Nature","doi":"10.1186/s40462-023-00396-z","usgsCitation":"Raboin, M.J., Plumb, J., Sholtis, M.D., Smith, D., Jackson, P.R., Rivera, J., Suski, C., and Cupp, A.R., 2023, Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock: Movement Ecology, v. 11, 42, 16 p., https://doi.org/10.1186/s40462-023-00396-z.","productDescription":"42, 16 p.","ipdsId":"IP-148214","costCenters":[{"id":344,"text":"Illinois Water Science Center","active":true,"usgs":true},{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true},{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":442636,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1186/s40462-023-00396-z","text":"Publisher Index Page"},{"id":435240,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9B8SRMW","text":"USGS data release","linkHelpText":"Acoustic Telemetry Evaluation of Invasive Carp in Kaukauna, Wisconsin (Summer 2019)"},{"id":419500,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wisconsin","otherGeospatial":"Fox River, Kaukauna locks","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -88.2903788929823,\n              44.27679879835844\n            ],\n            [\n              -88.30570324899331,\n              44.27679879835844\n            ],\n            [\n              -88.30570324899331,\n              44.270866037921394\n            ],\n            [\n              -88.2903788929823,\n              44.270866037921394\n            ],\n            [\n              -88.2903788929823,\n              44.27679879835844\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"11","noUsgsAuthors":false,"publicationDate":"2023-07-26","publicationStatus":"PW","contributors":{"authors":[{"text":"Raboin, Maggie Jo 0000-0002-1475-7253","orcid":"https://orcid.org/0000-0002-1475-7253","contributorId":317839,"corporation":false,"usgs":true,"family":"Raboin","given":"Maggie","email":"","middleInitial":"Jo","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":879428,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Plumb, John 0000-0003-4255-1612","orcid":"https://orcid.org/0000-0003-4255-1612","contributorId":223236,"corporation":false,"usgs":true,"family":"Plumb","given":"John","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":879429,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sholtis, Matthew D. 0000-0003-1904-8250","orcid":"https://orcid.org/0000-0003-1904-8250","contributorId":317840,"corporation":false,"usgs":true,"family":"Sholtis","given":"Matthew","middleInitial":"D.","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":879430,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Smith, David","contributorId":261251,"corporation":false,"usgs":false,"family":"Smith","given":"David","affiliations":[{"id":52784,"text":"U.S. Department of Agriculture, Economic Research Service","active":true,"usgs":false}],"preferred":false,"id":879431,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Jackson, P. Ryan 0000-0002-3154-6108 pjackson@usgs.gov","orcid":"https://orcid.org/0000-0002-3154-6108","contributorId":194529,"corporation":false,"usgs":true,"family":"Jackson","given":"P.","email":"pjackson@usgs.gov","middleInitial":"Ryan","affiliations":[{"id":35680,"text":"Illinois-Iowa-Missouri Water Science Center","active":true,"usgs":true},{"id":36532,"text":"Central Midwest Water Science Center","active":true,"usgs":true},{"id":344,"text":"Illinois Water Science Center","active":true,"usgs":true}],"preferred":true,"id":879432,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Rivera, Jose 0000-0003-3756-6860 jrivera@usgs.gov","orcid":"https://orcid.org/0000-0003-3756-6860","contributorId":201064,"corporation":false,"usgs":true,"family":"Rivera","given":"Jose","email":"jrivera@usgs.gov","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":879433,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Suski, C. D.","contributorId":190151,"corporation":false,"usgs":false,"family":"Suski","given":"C.","middleInitial":"D.","affiliations":[],"preferred":false,"id":879434,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Cupp, Aaron R. 0000-0001-5995-2100 acupp@usgs.gov","orcid":"https://orcid.org/0000-0001-5995-2100","contributorId":5162,"corporation":false,"usgs":true,"family":"Cupp","given":"Aaron","email":"acupp@usgs.gov","middleInitial":"R.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":879435,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70249842,"text":"70249842 - 2023 - A one-dimensional volcanic plume model for predicting ash aggregation","interactions":[],"lastModifiedDate":"2023-11-02T14:38:16.632909","indexId":"70249842","displayToPublicDate":"2023-07-26T09:34:34","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":7501,"text":"JGR Solid Earth","active":true,"publicationSubtype":{"id":10}},"title":"A one-dimensional volcanic plume model for predicting ash aggregation","docAbstract":"<p><span>During explosive volcanic eruptions, volcanic ash is ejected into the atmosphere, impacting aircraft safety and downwind communities. These volcanic clouds tend to be dominated by fine ash (&lt;63&nbsp;μm in diameter), permitting transport over hundreds to thousands of kilometers. However, field observations show that much of this fine ash aggregates into clusters or pellets with faster settling velocities than individual particles. Models of ash transport and deposition require an understanding of aggregation processes, which depend on factors like moisture content and local particle collision rates. In this study, we develop a Plume Model for Aggregate Prediction, a one-dimensional (1D) volcanic plume model that predicts the plume rise height, concentration of water phases, and size distribution of resulting ash aggregates from a set of eruption source parameters. The plume model uses a control volume approach to solve mass, momentum, and energy equations along the direction of the plume axis. The aggregation equation is solved using a fixed pivot technique and incorporates a sticking efficiency model developed from analog laboratory experiments of particle aggregation within a novel turbulence tower. When applied to the 2009 eruption of Redoubt Volcano, Alaska, the 1D model predicts that the majority of the plume is over-saturated with water, leading to a high rate of aggregation. Although the mean grain size of the computed Redoubt aggregates is larger than the measured deposits, with a peak at 1&nbsp;mm rather than 500&nbsp;μm, the present results provide a quantitative estimate for the magnitude of aggregation in an eruption.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2023JB027002","usgsCitation":"Hoffman, D.W., Mastin, L.G., Van Eaton, A.R., Solovitz, S.A., Cal, R., and Eaton, J.K., 2023, A one-dimensional volcanic plume model for predicting ash aggregation: JGR Solid Earth, v. 128, no. 9, e2023JB027002, 26 p., https://doi.org/10.1029/2023JB027002.","productDescription":"e2023JB027002, 26 p.","ipdsId":"IP-151689","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":442639,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2023jb027002","text":"Publisher Index Page"},{"id":435241,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9UFXP7T","text":"USGS data release","linkHelpText":"plumeria PMAP software release 1.0.3"},{"id":422335,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"128","issue":"9","noUsgsAuthors":false,"publicationDate":"2023-08-30","publicationStatus":"PW","contributors":{"authors":[{"text":"Hoffman, Davis W. 0000-0002-2621-0570","orcid":"https://orcid.org/0000-0002-2621-0570","contributorId":331319,"corporation":false,"usgs":false,"family":"Hoffman","given":"Davis","email":"","middleInitial":"W.","affiliations":[{"id":6986,"text":"Stanford University","active":true,"usgs":false}],"preferred":false,"id":887338,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mastin, Larry G. 0000-0002-4795-1992","orcid":"https://orcid.org/0000-0002-4795-1992","contributorId":265985,"corporation":false,"usgs":true,"family":"Mastin","given":"Larry","email":"","middleInitial":"G.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":887339,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Van Eaton, Alexa R. 0000-0001-6646-4594 avaneaton@usgs.gov","orcid":"https://orcid.org/0000-0001-6646-4594","contributorId":184079,"corporation":false,"usgs":true,"family":"Van Eaton","given":"Alexa","email":"avaneaton@usgs.gov","middleInitial":"R.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":887340,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Solovitz, Stephen A. 0000-0001-7019-2958","orcid":"https://orcid.org/0000-0001-7019-2958","contributorId":257659,"corporation":false,"usgs":false,"family":"Solovitz","given":"Stephen","email":"","middleInitial":"A.","affiliations":[{"id":52077,"text":"Washington State University, Vancouver","active":true,"usgs":false}],"preferred":false,"id":887341,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Cal, Raul B.","contributorId":257658,"corporation":false,"usgs":false,"family":"Cal","given":"Raul B.","affiliations":[{"id":6929,"text":"Portland State University","active":true,"usgs":false}],"preferred":false,"id":887342,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Eaton, John K. 0000-0001-6241-4266","orcid":"https://orcid.org/0000-0001-6241-4266","contributorId":331320,"corporation":false,"usgs":false,"family":"Eaton","given":"John","email":"","middleInitial":"K.","affiliations":[{"id":6986,"text":"Stanford University","active":true,"usgs":false}],"preferred":false,"id":887343,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70247431,"text":"70247431 - 2023 - Soil salinity and water level interact to generate tipping points in low salinity tidal wetlands responding to climate change","interactions":[],"lastModifiedDate":"2023-10-23T16:01:53.14607","indexId":"70247431","displayToPublicDate":"2023-07-26T07:21:19","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1584,"text":"Estuaries and Coasts","active":true,"publicationSubtype":{"id":10}},"title":"Soil salinity and water level interact to generate tipping points in low salinity tidal wetlands responding to climate change","docAbstract":"<div id=\"Abs1-section\" class=\"c-article-section\"><div id=\"Abs1-content\" class=\"c-article-section__content\"><p><span>Low salinity tidal wetlands (LSTW) are vulnerable to sea level rise and saltwater intrusion, thus their carbon sequestration capacity is threatened. However, the thresholds of rapid changes in carbon dynamics and biogeochemical processes in LSTW due to changes in hydroperiod and salinity regime remain unclear. In this study, we examined the effects of soil porewater salinity and water level on changes in net primary productivity (NPP) and greenhouse gas fluxes [GHG: methane (CH</span><sub>4</sub><span>), nitrous oxide (N</span><sub>2</sub><span>O), and carbon dioxide (CO</span><sub>2</sub><span>)] in LSTW using a wetland biogeochemistry model, Tidal Freshwater Wetland Denitrification and Decomposition (TFW-DNDC). TFW-DNDC was run with a series of combinations of soil salinities (0.1, 0.5, 1, 2, 4, 6, 8, 10 psu) and water levels relative to soil surface (-30, -20, -10, -5, 0, 5, 10, 20, 30 cm) for tidal forest and oligohaline marsh sites along the Savannah River and Waccamaw River, USA. Our results indicate that soil salinity and water level have antagonistic effects on CH</span><sub>4</sub><span>&nbsp;emissions and synergistic effects on CO</span><sub>2</sub><span>&nbsp;release. A soil salinity of 2-3 psu is the tipping point for the ecosystem level functional changes (e.g., NPP and CH</span><sub>4</sub><span>&nbsp;emissions) in LSTW. There are negative and nonlinear responses (NPP and CH</span><sub>4</sub><span>&nbsp;emission) to soil salinity. Furthermore, a soil water level from 10 cm below to 10 cm above the surface is a critical range in which biogeochemical processes respond strongly to hydrological changes. The presence of nonlinear tipping points in LSTW has large implications for understanding and predicting the effects of climate change on coastal wetland blue carbon storage and ecosystem dynamics.</span></p></div></div>","language":"English","publisher":"Springer Link","doi":"10.1007/s12237-023-01243-5","usgsCitation":"Wang, H., Krauss, K., Noe, G.E., Dai, Z., and Trettin, C.C., 2023, Soil salinity and water level interact to generate tipping points in low salinity tidal wetlands responding to climate change: Estuaries and Coasts, v. 46, p. 1808-1828, https://doi.org/10.1007/s12237-023-01243-5.","productDescription":"21 p., Data Release","startPage":"1808","endPage":"1828","ipdsId":"IP-147534","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"links":[{"id":419596,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9UR522Z","text":"Simulated net primary productivity and greenhouse gas emissions under various soil salinity and water table depth combinations in low salinity tidal wetlands"},{"id":419559,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Georgia, South Carolina","otherGeospatial":"Savannah River, Waccamaw River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -79.11240390141339,\n              33.488654159273864\n            ],\n            [\n              -79.38018104016614,\n              33.488654159273864\n            ],\n            [\n              -79.38018104016614,\n              33.26206953535984\n            ],\n            [\n              -79.11240390141339,\n              33.26206953535984\n            ],\n            [\n              -79.11240390141339,\n              33.488654159273864\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -80.827152056039,\n              32.01048930742758\n            ],\n            [\n              -80.827152056039,\n              32.42406331890592\n            ],\n            [\n              -81.31195336824427,\n              32.42406331890592\n            ],\n            [\n              -81.31195336824427,\n              32.01048930742758\n            ],\n            [\n              -80.827152056039,\n              32.01048930742758\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"46","noUsgsAuthors":false,"publicationDate":"2023-07-26","publicationStatus":"PW","contributors":{"authors":[{"text":"Wang, Hongqing 0000-0002-2977-7732","orcid":"https://orcid.org/0000-0002-2977-7732","contributorId":222377,"corporation":false,"usgs":true,"family":"Wang","given":"Hongqing","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":879598,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Krauss, Ken 0000-0003-2195-0729","orcid":"https://orcid.org/0000-0003-2195-0729","contributorId":222378,"corporation":false,"usgs":true,"family":"Krauss","given":"Ken","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":879599,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Noe, Gregory E. 0000-0002-6661-2646 gnoe@usgs.gov","orcid":"https://orcid.org/0000-0002-6661-2646","contributorId":139100,"corporation":false,"usgs":true,"family":"Noe","given":"Gregory","email":"gnoe@usgs.gov","middleInitial":"E.","affiliations":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true},{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":36183,"text":"Hydro-Ecological Interactions Branch","active":true,"usgs":true}],"preferred":true,"id":879600,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Dai, Zhaohua 0000-0002-0941-8345","orcid":"https://orcid.org/0000-0002-0941-8345","contributorId":290409,"corporation":false,"usgs":false,"family":"Dai","given":"Zhaohua","email":"","affiliations":[{"id":16203,"text":"Michigan Technological university","active":true,"usgs":false}],"preferred":false,"id":879601,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Trettin, Carl C. 0000-0003-0279-7191","orcid":"https://orcid.org/0000-0003-0279-7191","contributorId":293476,"corporation":false,"usgs":false,"family":"Trettin","given":"Carl","email":"","middleInitial":"C.","affiliations":[{"id":36493,"text":"USDA Forest Service","active":true,"usgs":false}],"preferred":false,"id":879602,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70247761,"text":"70247761 - 2023 - Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir","interactions":[],"lastModifiedDate":"2023-09-20T16:22:50.558877","indexId":"70247761","displayToPublicDate":"2023-07-26T07:02:22","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":16686,"text":"International Society for Microbial Ecology Journal","active":true,"publicationSubtype":{"id":10}},"title":"Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir","docAbstract":"<p>Brownlee Reservoir is a mercury (Hg)-impaired hydroelectric reservoir that exhibits dynamic hydrological and geochemical conditions and is located within the Hells Canyon Complex in Idaho, USA. Methylmercury (MeHg) contamination in fish is a concern in the reservoir. While MeHg production has historically been attributed to sulfate-reducing bacteria and methanogenic archaea, microorganisms carrying the<span>&nbsp;</span><i>hgcA</i><span>&nbsp;</span>gene are taxonomically and metabolically diverse and the major biogeochemical cycles driving mercury (Hg) methylation are not well understood. In this study, Hg speciation and redox-active compounds were measured throughout Brownlee Reservoir across the stratified period in four consecutive years (2016–2019) to identify the location where and redox conditions under which MeHg is produced. Metagenomic sequencing was performed on a subset of samples to characterize the microbial community with<span>&nbsp;</span><i>hgcA</i><span>&nbsp;</span>and identify possible links between biogeochemical cycles and MeHg production. Biogeochemical profiles suggested in situ water column Hg methylation was the major source of MeHg. These profiles, combined with genome-resolved metagenomics focused on<span>&nbsp;</span><i>hgcA</i>-carrying microbes, indicated that MeHg production occurs in this system under nitrate- or manganese-reducing conditions, which were previously thought to preclude Hg-methylation. Using this multidisciplinary approach, we identified the cascading effects of interannual variability in hydrology on the redox status, microbial metabolic strategies, abundance and metabolic diversity of Hg methylators, and ultimately MeHg concentrations&nbsp;throughout the reservoir. This work expands the known conditions conducive to producing MeHg and suggests that the Hg-methylation mitigation efforts by nitrate or manganese amendment may be unsuccessful in some locations.</p>","language":"English","publisher":"Nature","doi":"10.1038/s41396-023-01482-1","usgsCitation":"Peterson, B.D., Poulin, B., Krabbenhoft, D.P., Tate, M., Baldwin, A.K., Naymik, J., Gastelecutto, N., and McMahon, K.D., 2023, Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir: International Society for Microbial Ecology Journal, v. 17, p. 1705-1718, https://doi.org/10.1038/s41396-023-01482-1.","productDescription":"14 p.","startPage":"1705","endPage":"1718","ipdsId":"IP-152265","costCenters":[{"id":677,"text":"Wisconsin Water Science Center","active":true,"usgs":true},{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"links":[{"id":442645,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1038/s41396-023-01482-1","text":"Publisher Index Page"},{"id":419879,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Idaho","otherGeospatial":"Brownlee Reservoir","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -116.82386599883054,\n              44.927005686412485\n            ],\n            [\n              -117.32902035469117,\n              44.927005686412485\n            ],\n            [\n              -117.32902035469117,\n              44.33306182839914\n            ],\n            [\n              -116.82386599883054,\n              44.33306182839914\n            ],\n            [\n              -116.82386599883054,\n              44.927005686412485\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"17","noUsgsAuthors":false,"publicationDate":"2023-07-26","publicationStatus":"PW","contributors":{"authors":[{"text":"Peterson, Benjamin D.","contributorId":328487,"corporation":false,"usgs":false,"family":"Peterson","given":"Benjamin","email":"","middleInitial":"D.","affiliations":[{"id":16975,"text":"University of California Davis","active":true,"usgs":false}],"preferred":false,"id":880305,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Poulin, Brett A.","contributorId":328488,"corporation":false,"usgs":false,"family":"Poulin","given":"Brett A.","affiliations":[{"id":16975,"text":"University of California Davis","active":true,"usgs":false}],"preferred":false,"id":880306,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Krabbenhoft, David P. 0000-0003-1964-5020 dpkrabbe@usgs.gov","orcid":"https://orcid.org/0000-0003-1964-5020","contributorId":1658,"corporation":false,"usgs":true,"family":"Krabbenhoft","given":"David","email":"dpkrabbe@usgs.gov","middleInitial":"P.","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true},{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true},{"id":677,"text":"Wisconsin Water Science Center","active":true,"usgs":true},{"id":37464,"text":"WMA - Laboratory & Analytical Services Division","active":true,"usgs":true}],"preferred":true,"id":880307,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Tate, Michael T. 0000-0003-1525-1219 mttate@usgs.gov","orcid":"https://orcid.org/0000-0003-1525-1219","contributorId":3144,"corporation":false,"usgs":true,"family":"Tate","given":"Michael T.","email":"mttate@usgs.gov","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true},{"id":677,"text":"Wisconsin Water Science Center","active":true,"usgs":true}],"preferred":true,"id":880308,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Baldwin, Austin K. 0000-0002-6027-3823 akbaldwi@usgs.gov","orcid":"https://orcid.org/0000-0002-6027-3823","contributorId":4515,"corporation":false,"usgs":true,"family":"Baldwin","given":"Austin","email":"akbaldwi@usgs.gov","middleInitial":"K.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true},{"id":677,"text":"Wisconsin Water Science Center","active":true,"usgs":true}],"preferred":true,"id":880309,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Naymik, Jesse","contributorId":229386,"corporation":false,"usgs":false,"family":"Naymik","given":"Jesse","affiliations":[{"id":41632,"text":"Idaho Power Company","active":true,"usgs":false}],"preferred":false,"id":880310,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Gastelecutto, Nick","contributorId":296597,"corporation":false,"usgs":false,"family":"Gastelecutto","given":"Nick","email":"","affiliations":[{"id":41632,"text":"Idaho Power Company","active":true,"usgs":false}],"preferred":false,"id":880311,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"McMahon, Katherine D.","contributorId":194624,"corporation":false,"usgs":false,"family":"McMahon","given":"Katherine","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":880312,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70250118,"text":"70250118 - 2023 - A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex","interactions":[],"lastModifiedDate":"2023-11-21T12:40:57.336466","indexId":"70250118","displayToPublicDate":"2023-07-26T06:39:36","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2333,"text":"Journal of Heredity","active":true,"publicationSubtype":{"id":10}},"title":"A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex","docAbstract":"<p class=\"chapter-para\">Rattlesnakes play important roles in their ecosystems by regulating prey populations, are involved in complex coevolutionary dynamics with their prey, and exhibit a variety of unusual adaptations, including maternal care, heat-sensing pit organs, hinged fangs, and medically-significant venoms. The western rattlesnake (<i>Crotalus oreganus</i>) is one of the widest ranging rattlesnake species, with a distribution from British Columbia, where it is listed as threatened, to Baja California and east across the Great Basin to western Wyoming, Colorado and New Mexico. Here, we report a new reference genome assembly for one of six currently recognized subspecies,<span>&nbsp;</span><i>C. oreganus helleri</i>, as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomic sequencing strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 698 scaffolds spanning 1,564,812,557 base pairs, has a contig N50 of 64.7 Mb, a scaffold N50 of 110.8 Mb, and BUSCO complete score of 90.5%. This reference genome will be valuable for studies on the genomic basis of venom evolution and variation within<span>&nbsp;</span><i>Crotalus</i>, in resolving the taxonomy of<span>&nbsp;</span><i>C. oreganus</i><span>&nbsp;</span>and its relatives, and for the conservation and management of rattlesnakes in general.</p>","language":"English","publisher":"Oxford Academic","doi":"10.1093/jhered/esad045","usgsCitation":"Westeen, E.P., Escalona, M., Holding, M., Beraut, E., Fairbairn, C., Marimuthu, M.P., Nguyen, O., Perri, R., Fisher, R., Toffelmier, E., Shaffer, H., and Wang, I.J., 2023, A genome assembly for the southern Pacific rattlesnake, Crotalus oreganus helleri, in the western rattlesnake species complex: Journal of Heredity, v. 114, no. 6, p. 681-689, https://doi.org/10.1093/jhered/esad045.","productDescription":"9 p.","startPage":"681","endPage":"689","ipdsId":"IP-153896","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":442647,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/jhered/esad045","text":"Publisher Index Page"},{"id":422778,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United 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,{"id":70247361,"text":"70247361 - 2023 - The Chesapeake Bay Land Change Model (CBLCM): Simulating future land use scenarios and potential impacts on water quality","interactions":[],"lastModifiedDate":"2023-07-31T10:59:03.735196","indexId":"70247361","displayToPublicDate":"2023-07-25T12:18:54","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2529,"text":"Journal of the American Water Resources Association","active":true,"publicationSubtype":{"id":10}},"title":"The Chesapeake Bay Land Change Model (CBLCM): Simulating future land use scenarios and potential impacts on water quality","docAbstract":"<p>The Chesapeake Bay Land Change Model (CBLCM) is an open-source pseudo-cellular automata land change model tailored for loose coupling with watershed models. The CBLCM simulates infill development, residential and commercial development, natural land and agricultural land conversion, and growth served by sewer or septic wastewater treatment. The CBLCM is unique among land change models by simulating multiple types of development and explicitly accounting for infill development and the spatial patterns of development densities. The CBLCM was used to simulate five future land use scenarios, holding population constant, for all counties within and adjacent to the Chesapeake Bay watershed from 2013 to 2055. Results are presented here for the state of Maryland over the period 2013–2025 to illustrate model functionality and validation. The growth management (GM) scenario achieved the least development and potential impacts to natural and agricultural lands while accommodating the same amount of population growth as the other four scenarios. Scenarios focusing exclusively on natural or agricultural land protection shifted development to unprotected areas resulting in unforeseen water quality consequences. Simultaneously achieving more compact development while protecting the most valued natural and agricultural lands requires a combination of GM and land conservation policies and actions.</p>","language":"English","publisher":"American Water Resources Association","doi":"10.1111/1752-1688.13131","usgsCitation":"Claggett, P., Ahmed, L., Irani, F., McDonald, S., and Thompson, R., 2023, The Chesapeake Bay Land Change Model (CBLCM): Simulating future land use scenarios and potential impacts on water quality: Journal of the American Water Resources Association, 21-0151, 26 p., https://doi.org/10.1111/1752-1688.13131.","productDescription":"21-0151, 26 p.","ipdsId":"IP-134156","costCenters":[{"id":242,"text":"Eastern Geographic Science Center","active":true,"usgs":true},{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true}],"links":[{"id":442650,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index 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firani@usgs.gov","orcid":"https://orcid.org/0000-0002-2424-0135","contributorId":303119,"corporation":false,"usgs":true,"family":"Irani","given":"Frederick","email":"firani@usgs.gov","affiliations":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true}],"preferred":true,"id":879322,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McDonald, Sarah 0000-0003-3534-325X","orcid":"https://orcid.org/0000-0003-3534-325X","contributorId":303116,"corporation":false,"usgs":true,"family":"McDonald","given":"Sarah","email":"","affiliations":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true}],"preferred":true,"id":879323,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Thompson, Renee 0000-0003-1463-5173 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,{"id":70247192,"text":"ofr20231052 - 2023 - Status of spectacled eiders (Somateria fischeri) on the Yukon-Kuskokwim Delta, Alaska, 2022—Testing and updating predictive models","interactions":[],"lastModifiedDate":"2023-09-18T19:45:02.263947","indexId":"ofr20231052","displayToPublicDate":"2023-07-25T12:03:50","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2023-1052","displayTitle":"Status of Spectacled Eiders (<em>Somateria fischeri</em>) on the Yukon-Kuskokwim Delta, Alaska, 2022—Testing and Updating Predictive Models","title":"Status of spectacled eiders (Somateria fischeri) on the Yukon-Kuskokwim Delta, Alaska, 2022—Testing and updating predictive models","docAbstract":"<p>The nesting biology and demography of spectacled eiders (<i>Somateria fischeri</i>) along the lower Kashunuk River on the Yukon-Kuskokwim Delta, Alaska, were studied from 1993 to 2002. This previous work demonstrated that the breeding population on the study area was declining, and demographic modeling predicted that the population would continue to decline from 2002 forward. The predicted decline was primarily because of lead shot in tundra wetlands in the area, exposure of nesting females to lead, resulting in low adult female survival. The model predicted that lead pellets already in wetlands would slowly settle beyond the foraging depth of eiders, and that, lead exposure rates would decline. The goal of this project was to test this prediction by revisiting the lower Kashunuk River study area in 2022 to (1) update previous datasets regarding demographic parameters and (2) validate (or refute) existing models relative to lead exposure rates and the effects of lead on population dynamics. In the summer of 2022, a total of 37 nests were found in a sub-area of the historical study area. Comparing to past efforts in this same sub-area, more nests were found than predicted but the proportion of nesting female spectacled eiders exposed to lead in 2022 (24.3 percent) was still similar to levels of exposure observed between 1994 and 2002 (28.5 percent). Thus, data from the 2022 survey suggests that the earlier decline in numbers of nesting spectacled eiders has reversed, but there has been little decrease in lead exposure over time.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20231052","collaboration":"Prepared in cooperation with the U.S. Fish and Wildlife Service","usgsCitation":"Flint, P.L., 2023, Status of spectacled eiders (<em>Somateria fischeri</em>) on the Yukon-Kuskokwim Delta, Alaska, 2022—Testing and updating predictive models: U.S. Geological Survey Open-File Report 2023–1052, 5 p., https://doi.org/10.3133/ofr20231052.","productDescription":"vi, 5 p.","onlineOnly":"Y","ipdsId":"IP-151770","costCenters":[{"id":65299,"text":"Alaska Science Center Ecosystems","active":true,"usgs":true}],"links":[{"id":419316,"rank":5,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/of/2023/1052/ofr20231052.XML"},{"id":419315,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/of/2023/1052/images"},{"id":419314,"rank":3,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.er.usgs.gov/publication/ofr20231052/full","text":"Report","linkFileType":{"id":5,"text":"html"},"description":"OFR 2023-1052"},{"id":419313,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2023/1052/ofr20231052.pdf","text":"Report","size":"1.6 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2023-1052"},{"id":419312,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2023/1052/coverthb.jpg"}],"country":"United States","state":"Alaska","otherGeospatial":"Yukon-Kuskokwim Delta","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -166.06721221943172,\n              61.59887493914758\n            ],\n            [\n              -166.06721221943172,\n              60.1670676261173\n            ],\n            [\n              -162.86058022136012,\n              60.1670676261173\n            ],\n            [\n              -162.86058022136012,\n              61.59887493914758\n            ],\n            [\n              -166.06721221943172,\n              61.59887493914758\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/asc/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/asc/\">Alaska Science Center</a><br>U.S. Geological Survey<br>4210 University Drive<br>Anchorage, Alaska 99508</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Methods and Study Area</li><li>Results</li><li>Discussion</li><li>References Cited</li></ul>","publishedDate":"2023-07-25","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Flint, Paul L. 0000-0002-8758-6993 pflint@usgs.gov","orcid":"https://orcid.org/0000-0002-8758-6993","contributorId":3284,"corporation":false,"usgs":true,"family":"Flint","given":"Paul","email":"pflint@usgs.gov","middleInitial":"L.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":879049,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70247100,"text":"sir20235079 - 2023 - Techniques for estimating the magnitude and frequency of peak flows on small streams in Minnesota, excluding the Rainy River Basin, based on data through water year 2019","interactions":[],"lastModifiedDate":"2026-03-13T13:20:17.495243","indexId":"sir20235079","displayToPublicDate":"2023-07-25T10:09:21","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2023-5079","displayTitle":"Techniques for Estimating the Magnitude and Frequency of Peak Flows on Small Streams in Minnesota, Excluding the Rainy River Basin, Based on Data Through Water Year 2019","title":"Techniques for estimating the magnitude and frequency of peak flows on small streams in Minnesota, excluding the Rainy River Basin, based on data through water year 2019","docAbstract":"<p>Annual peak-flow data collected at U.S. Geological Survey streamgages in Minnesota and adjacent areas of neighboring states of Iowa and South Dakota were analyzed to develop and update regional regression equations that can be used to estimate the magnitude and frequency of peak streamflow for ungaged streams in Minnesota, excluding the Lake of the Woods-Rainy River Basin upstream from Kenora, Ontario, Canada. Hydraulic engineers use peak-flow frequency estimates to inform designs of bridges, culverts, and dams, and water managers use the estimates for regulation and planning activities. Peak-flow estimates are provided for the 66.7-, 50-, 20-, 10-, 4-, 2-, 1-, and 0.2-percent annual exceedance probabilities (AEPs), which are equivalent to annual flood-frequency recurrence intervals of 1.5-, 2-, 5-, 10-, 25-, 50-, 100-, and 500-years, respectively. The estimates were computed by applying the expected moments algorithm to fit a Pearson Type III distribution to the logarithms of annual peak flows for 298 streamgages based on annual peak-flow data collected through water year 2019. The study area is represented by six hydrologic regions delineated on the basis of a pattern of residuals of statewide regressions, using basin characteristics such as drainage area, main-channel slope, lake area, storage area, and mean annual runoff as explanatory variables. The concept and principles of hydrologic landscape units was used to validate the regions. Residual analysis of the regional regression equations was used to subsequently develop equations relating the peak flow estimates for selected AEPs using 17 characteristics tested as explanatory variables in the regression analysis.</p><p>The equations developed in this study can be used to produce AEPs within the six regions and to update equations developed in earlier, similar studies in Minnesota. Furthermore, updating the equations in StreamStats, a web-based geographic information system tool developed by the U.S. Geological Survey, will allow hydraulic engineers and water managers to obtain AEPs and basin characteristics for user-selected locations on streams through an interactive map.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20235079","collaboration":"Prepared in cooperation with the Minnesota Department of Transportation","usgsCitation":"Sanocki, C.A., and Levin, S.B., 2023, Techniques for estimating the magnitude and frequency of peak flows on small streams in Minnesota, excluding the Rainy River Basin, based on data through water year 2019: U.S. Geological Survey Scientific Investigations Report 2023–5079, 15 p., https://doi.org/10.3133/sir20235079.","productDescription":"Report: v, 15 p.; 2 Data Releases; 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Release"},"url":"https://doi.org/10.5066/P9T1HO7Q","text":"USGS data release","linkHelpText":"Model archive of regional flood frequency equations for Minnesota streams"},{"id":419260,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2023/5079/images/"},{"id":419259,"rank":3,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2023/5079/sir20235079.XML"},{"id":419258,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2023/5079/sir20235079.pdf","text":"Report","size":"3.6 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2023–5079"},{"id":501042,"rank":9,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_115013.htm","linkFileType":{"id":5,"text":"html"}}],"country":"United 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 \"}}]}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/upper-midwest-water-science-center\" data-mce-href=\"https://www.usgs.gov/centers/upper-midwest-water-science-center\">Upper Midwest Water Science Center</a><br>U.S. Geological Survey<br>1 Gifford Pinchot Drive<br>Madison, WI 53726</p><p><a href=\"https://pubs.er.usgs.gov/contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Abstract</li><li>Introduction</li><li>Study Methods</li><li>Development of Regional Regression Equations</li><li>Example 1</li><li>Application of Regional Regression Equations</li><li>Summary</li><li>Acknowledgments</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2023-07-25","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Sanocki, Christopher A. 0000-0001-6714-5421 sanocki@usgs.gov","orcid":"https://orcid.org/0000-0001-6714-5421","contributorId":3142,"corporation":false,"usgs":true,"family":"Sanocki","given":"Christopher","email":"sanocki@usgs.gov","middleInitial":"A.","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":878899,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Levin, Sara B. 0000-0002-2448-3129","orcid":"https://orcid.org/0000-0002-2448-3129","contributorId":209947,"corporation":false,"usgs":true,"family":"Levin","given":"Sara B.","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":878900,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70247098,"text":"ofr20231033 - 2023 - Guidelines for calibration of uncrewed aircraft systems imagery","interactions":[],"lastModifiedDate":"2023-07-25T16:56:46.379696","indexId":"ofr20231033","displayToPublicDate":"2023-07-25T09:57:25","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2023-1033","displayTitle":"Guidelines for Calibration of Uncrewed Aircraft Systems Imagery","title":"Guidelines for calibration of uncrewed aircraft systems imagery","docAbstract":"<h1>Executive Summary</h1><p>This report outlines quality assurance (QA) processes, including radiometric and geometric calibration guidelines, and guidelines for data acquisition and quality control to be followed by U.S. Geological Survey (USGS) researchers for acquiring and processing uncrewed aircraft systems (UAS) data. These QA processes ensure that UAS data can be used for quantitative analysis and are comparable with other standard geospatial data.</p><p>Remote sensing data play a critical role in monitoring Earth’s resources. Traditionally, the USGS and Department of the Interior have used well calibrated metric sensors mounted on satellite or aircraft platforms to collect these data. These sensors and platforms are stable, and data have been processed using standard pipelines. These processes ensured that the data are generally consistent with each other and benefitted a diverse group of users. These data are shared among multiple researchers around the world through the internet and other means, using standard formats and metadata.</p><p>In the last few years, UAS platforms have democratized the remote sensing data collection further, bringing an unparalleled level of control of time, sensors, and processes to individual researchers. Together with the development of cheaper and lighter sensors and relaxation of prohibitions against UAS operation in the National Airspace System by the Federal Aviation Authority, researchers can collect remote sensing data using UAS platforms. Researchers often customize the sensors on these UAS systems based on their specific requirements and use ad hoc processing steps to generate data.</p><p>A challenge is that these data are often produced by a wide array of sensors and processes that render them potentially inconsistent with each other. Therefore, unlike data collected from metric sensors, UAS-based data are designed to benefit only specific user groups. The data thus generated often lack traceability to known standards, making them difficult to use with other geospatial data.</p><p>This report provides radiometric and geometric calibration guidelines, as well as guidelines for data acquisition and quality control, that can be followed by USGS researchers in acquiring and processing UAS data. Instead of calibrating sensors, researchers collecting UAS data can focus on calibrating the data. Various radiometric calibration processes are provided, and the two panel empirical line method is highlighted for radiometric calibration.</p><p>For geometric calibration, USGS and Department of the Interior researchers are experienced in following standard calibration procedures provided by standard UAS data processing software. However, researchers may be aided in paying attention to the tie points and the accuracy of the ground control points used for geometric calibration and data production. The accuracy of ground control points are related to the requirements of the project. The ground control points and the quality of tie points directly contribute to the geometric accuracy of the data, regardless of the ground sample distance of the imagery.</p><p>The guidelines outlined in this report are intended to ensure that the data are in common units and are quantifiable and comparable with other data. These QA and calibration processes can be critical in ensuring that these datasets are used to the maximum extent possible. Including the calibration parameters (and their uncertainties) as part of metadata can allow for easier data discovery and analytical filters.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20231033","usgsCitation":"Sampath, A., Shrestha, M., While, M., and Scholl, V.M., 2023, Guidelines for calibration of uncrewed aircraft systems imagery: U.S. Geological Survey Open-File Report 2023–1033, 23 p., https://doi.org/10.3133/ofr20231033.","productDescription":"v, 23 p.","numberOfPages":"34","onlineOnly":"Y","ipdsId":"IP-146359","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":419305,"rank":5,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/ofr20231033/full"},{"id":419252,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/of/2023/1033/images/"},{"id":419251,"rank":3,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/of/2023/1033/ofr20231033.XML"},{"id":419250,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2023/1033/ofr20231033.pdf","text":"Report","size":"3.7 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2023–1033"},{"id":419249,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2023/1033/coverthb.jpg"}],"contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/eros\" data-mce-href=\"https://www.usgs.gov/centers/eros\">Earth Resources Observation and Science Center</a><br>U.S. Geological Survey<br>47914 252nd Street<br>Sioux Falls, SD 57198</p><p><a href=\"https://pubs.er.usgs.gov/contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Executive Summary</li><li>Introduction</li><li>Remote Sensing</li><li>Uncrewed Aircraft Systems Remote Sensing</li><li>Radiometric Calibration</li><li>Field Data</li><li>Geometric Data Quality</li><li>Additional Calibration Considerations</li><li>Conclusions</li><li>Acknowledgments</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2023-07-25","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Sampath, Aparajithan 0000-0002-6922-4913","orcid":"https://orcid.org/0000-0002-6922-4913","contributorId":222486,"corporation":false,"usgs":false,"family":"Sampath","given":"Aparajithan","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":false,"id":878878,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Shrestha, Mahesh 0000-0002-8368-6399 mshrestha@contractor.usgs.gov","orcid":"https://orcid.org/0000-0002-8368-6399","contributorId":259303,"corporation":false,"usgs":false,"family":"Shrestha","given":"Mahesh","email":"mshrestha@contractor.usgs.gov","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":true,"id":878879,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"While, Michelle","contributorId":317269,"corporation":false,"usgs":false,"family":"While","given":"Michelle","email":"","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":false,"id":878880,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Scholl, Victoria Mary 0000-0002-2085-1449","orcid":"https://orcid.org/0000-0002-2085-1449","contributorId":295713,"corporation":false,"usgs":true,"family":"Scholl","given":"Victoria","email":"","middleInitial":"Mary","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":878881,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70247279,"text":"70247279 - 2023 - A test of the green wave hypothesis in omnivorous brown bears across North America","interactions":[],"lastModifiedDate":"2023-10-11T15:41:03.138478","indexId":"70247279","displayToPublicDate":"2023-07-25T09:22:46","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1445,"text":"Ecography","active":true,"publicationSubtype":{"id":10}},"title":"A test of the green wave hypothesis in omnivorous brown bears across North America","docAbstract":"<p><span>Herbivorous animals tend to seek out plants at intermediate phenological states to improve energy intake while minimizing consumption of fibrous material. In some ecosystems, the timing of green-up is heterogeneous and propagates across space in a wave-like pattern, known as the green wave. Tracking the green wave allows individuals to prolong access to higher-quality forage. While there is a plethora of empirical support for such behavior in herbivorous taxa, the green wave hypothesis (GWH) is nuanced based on factors such as body morphometrics and digestive capacity. Furthermore, little is known about whether other taxa, such as omnivores, track the green wave. Our objective was to assess whether the GWH can be extended to explain the movements of omnivores. Using GPS collar data from seven populations (n = 127 individuals) of brown bears&nbsp;</span><i>Ursus arctos</i><span>&nbsp;across their entire North American range, we first tested whether bears tracked the green wave. Using conditional resource selection functions (RSFs), we found that variation in proxies of vegetative forage quality better explained movement and habitat selection than proxies of forage biomass in over half of the bears in our study, providing evidence of green wave tracking. Second, we assess factors that explained variation in green wave tracking using linear mixed effects models. Green wave tracking in brown bears was explained by the variation in availability of green-up within spring home ranges, and how green-up transitioned across those home ranges. Our results demonstrate that the GWH can partially explain movement of a non-migratory omnivorous species, extending the generality of the GWH as a broad predictor of animal space use. The green wave is another resource wave brown bears track, and our findings help predict brown bear space use, which can be used to guide conservation and habitat restoration efforts.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/ecog.06549","usgsCitation":"Bowersock, N.R., Ciarniello, L.M., Deacy, W.W., Heard, D.C., Joly, K., Lamb, C.T., Leacock, W.B., Mclellan, B., Mowat, G., Sorum, M.S., van Manen, F.T., and Merkle, J., 2023, A test of the green wave hypothesis in omnivorous brown bears across North America: Ecography, v. 2023, no. 10, e06549, 12 p., https://doi.org/10.1111/ecog.06549.","productDescription":"e06549, 12 p.","ipdsId":"IP-142801","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":442652,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/ecog.06549","text":"Publisher Index Page"},{"id":419350,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Canada, United States","state":"Alaska, British Columbia, Idaho, Montana, Wyoming","otherGeospatial":"Elk Valley, Flathead Valley, Gates of the Arctic, Greater Yellowstone ecosystem, Kodiak Island, Parsnip Mountain, Parsnip Plateau","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -107.58270702767695,\n              43.58074880621092\n            ],\n            [\n              -114.86203363678416,\n              50.16374484994262\n            ],\n            [\n              -122.08539027157664,\n              55.91094145040341\n            ],\n            [\n              -144.08820653499708,\n              68.6311238737492\n            ],\n            [\n              -152.21192576584002,\n              69.43288028347476\n            ],\n            [\n              -161.02170588000897,\n              68.55829959585586\n            ],\n            [\n              -155.54559520650918,\n              56.09696676721251\n            ],\n            [\n              -150.40416182908686,\n              57.307524490103276\n            ],\n            [\n              -144.85601862056535,\n              61.07891762933866\n            ],\n            [\n              -130.33415600545123,\n              54.54538997683014\n            ],\n            [\n              -121.6241105920378,\n              49.020537277214885\n            ],\n            [\n              -111.72137354906724,\n              44.96531210384342\n            ],\n            [\n              -111.36242529627467,\n              42.9172213366808\n            ],\n            [\n              -106.9583587691117,\n              42.788416970678725\n            ],\n            [\n              -107.58270702767695,\n              43.58074880621092\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"2023","issue":"10","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Bowersock, Nathaniel R.","contributorId":268804,"corporation":false,"usgs":false,"family":"Bowersock","given":"Nathaniel","email":"","middleInitial":"R.","affiliations":[{"id":36555,"text":"Montana State University","active":true,"usgs":false}],"preferred":false,"id":879090,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ciarniello, L. M.","contributorId":317704,"corporation":false,"usgs":false,"family":"Ciarniello","given":"L.","email":"","middleInitial":"M.","affiliations":[{"id":69132,"text":"Aklak Wildlife Consulting","active":true,"usgs":false}],"preferred":false,"id":879091,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Deacy, William W.","contributorId":287298,"corporation":false,"usgs":false,"family":"Deacy","given":"William","email":"","middleInitial":"W.","affiliations":[{"id":36245,"text":"NPS","active":true,"usgs":false}],"preferred":false,"id":879092,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Heard, D. C.","contributorId":317706,"corporation":false,"usgs":false,"family":"Heard","given":"D.","email":"","middleInitial":"C.","affiliations":[{"id":69134,"text":"BC Ministry of Forests, Lands and Natural Resource Operations","active":true,"usgs":false}],"preferred":false,"id":879093,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Joly, Kyle","contributorId":53117,"corporation":false,"usgs":false,"family":"Joly","given":"Kyle","email":"","affiliations":[{"id":12462,"text":"U.S. Department of the Interior, National Park Service","active":true,"usgs":false}],"preferred":false,"id":879094,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Lamb, Clayton T.","contributorId":216009,"corporation":false,"usgs":false,"family":"Lamb","given":"Clayton","email":"","middleInitial":"T.","affiliations":[{"id":36696,"text":"University of Alberta","active":true,"usgs":false}],"preferred":false,"id":879095,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Leacock, William B.","contributorId":211732,"corporation":false,"usgs":false,"family":"Leacock","given":"William","email":"","middleInitial":"B.","affiliations":[{"id":36188,"text":"U.S. Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":879096,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Mclellan, Bruce","contributorId":167051,"corporation":false,"usgs":false,"family":"Mclellan","given":"Bruce","email":"","affiliations":[{"id":24603,"text":"British Columbia Ministry of Forests Research Branch","active":true,"usgs":false}],"preferred":false,"id":879097,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Mowat, Garth","contributorId":216012,"corporation":false,"usgs":false,"family":"Mowat","given":"Garth","email":"","affiliations":[{"id":13452,"text":"Univ. British Columbia","active":true,"usgs":false}],"preferred":false,"id":879098,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Sorum, Mathew S","contributorId":243500,"corporation":false,"usgs":false,"family":"Sorum","given":"Mathew","email":"","middleInitial":"S","affiliations":[],"preferred":false,"id":879099,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"van Manen, Frank T. 0000-0001-5340-8489 fvanmanen@usgs.gov","orcid":"https://orcid.org/0000-0001-5340-8489","contributorId":2267,"corporation":false,"usgs":true,"family":"van Manen","given":"Frank","email":"fvanmanen@usgs.gov","middleInitial":"T.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":879100,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Merkle, Jerod A.","contributorId":270421,"corporation":false,"usgs":false,"family":"Merkle","given":"Jerod A.","affiliations":[{"id":40829,"text":"uwy","active":true,"usgs":false}],"preferred":false,"id":879101,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}}
,{"id":70247277,"text":"70247277 - 2023 - The relation between decadal droughts and eruptions of Steamboat Geyser in Yellowstone National Park, USA","interactions":[],"lastModifiedDate":"2023-07-26T13:47:46.688774","indexId":"70247277","displayToPublicDate":"2023-07-25T08:36:49","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1757,"text":"Geochemistry, Geophysics, Geosystems","active":true,"publicationSubtype":{"id":10}},"title":"The relation between decadal droughts and eruptions of Steamboat Geyser in Yellowstone National Park, USA","docAbstract":"<p><span>In the past century, most eruptions of Steamboat Geyser in Yellowstone National Park's Norris Geyser Basin were mainly clustered in three episodes: 1961–1969, 1982–1984, and ongoing since 2018. These eruptive episodes resulted in extensive disturbance to surrounding trees. To characterize tree response over time as an indicator of geyser activity adjustments to climate variability, aerial and ground images were analyzed to document changes in tree coverage around the geyser since 1954. Radiocarbon dating of silicified tree remnants from within 14&nbsp;m of the geyser vent was used to examine geyser response to possible variations in decadal to centennial precipitation patterns. We searched for atypical or absent growth rings in cores from live trees in years associated with large geyser eruptions. Photographs indicate that active eruptive phases have adversely affected trees up to 30&nbsp;m from the vent, primarily in the dominant downwind direction. Radiocarbon dates indicate that the geyser formed before 1878, in contrast to the birthdate reported in historical documents. Further, the ages of the silicified trees cluster within three episodes that are temporally correlated with periods of relative drought in the Yellowstone region during the 15th–17th centuries. The discontinuous growth of trees around the geyser suggests that changes in eruptive patterns occur in response to decadal to multidecadal droughts. This inference is supported by the lack of silicified specimens with more than 20 annual rings and by the existence of atypical or missing rings in live trees during periods of extended geyser activity.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2023GC010988","usgsCitation":"Hurwitz, S., King, J., Pederson, G.T., Reed, M.H., Harrison, L.N., Hungerford, J., Vaughan, R.G., and Manga, M., 2023, The relation between decadal droughts and eruptions of Steamboat Geyser in Yellowstone National Park, USA: Geochemistry, Geophysics, Geosystems, v. 24, no. 7, e2023GC010988, 16 p., https://doi.org/10.1029/2023GC010988.","productDescription":"e2023GC010988, 16 p.","ipdsId":"IP-151989","costCenters":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true},{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true},{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":442655,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2023gc010988","text":"Publisher Index Page"},{"id":435243,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9NG2TF4","text":"USGS data release","linkHelpText":"Radiocarbon dating of silicified wood from around Steamboat Geyser in Norris Geyser Basin, Yellowstone National Park, 2021-2022"},{"id":419346,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wyoming","otherGeospatial":"Steamboat Geyser, Yellowstone National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -110.70737958606496,\n              44.726071382948504\n            ],\n            [\n              -110.70737958606496,\n              44.720452350460704\n            ],\n            [\n              -110.69905051930982,\n              44.720452350460704\n            ],\n            [\n              -110.69905051930982,\n              44.726071382948504\n            ],\n            [\n              -110.70737958606496,\n              44.726071382948504\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"24","issue":"7","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Hurwitz, Shaul 0000-0001-5142-6886 shaulh@usgs.gov","orcid":"https://orcid.org/0000-0001-5142-6886","contributorId":2169,"corporation":false,"usgs":true,"family":"Hurwitz","given":"Shaul","email":"shaulh@usgs.gov","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":879082,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"King, John C.","contributorId":225237,"corporation":false,"usgs":false,"family":"King","given":"John C.","affiliations":[{"id":41082,"text":"Lone Pine Research","active":true,"usgs":false}],"preferred":false,"id":879083,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Pederson, Gregory T. 0000-0002-6014-1425 gpederson@usgs.gov","orcid":"https://orcid.org/0000-0002-6014-1425","contributorId":3106,"corporation":false,"usgs":true,"family":"Pederson","given":"Gregory","email":"gpederson@usgs.gov","middleInitial":"T.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":879084,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Reed, Mara H.","contributorId":317700,"corporation":false,"usgs":false,"family":"Reed","given":"Mara","email":"","middleInitial":"H.","affiliations":[{"id":6609,"text":"UC Berkeley","active":true,"usgs":false}],"preferred":false,"id":879085,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Harrison, Lauren N 0000-0002-6621-5958","orcid":"https://orcid.org/0000-0002-6621-5958","contributorId":300066,"corporation":false,"usgs":true,"family":"Harrison","given":"Lauren","email":"","middleInitial":"N","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":879086,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hungerford, Jefferson","contributorId":243584,"corporation":false,"usgs":false,"family":"Hungerford","given":"Jefferson","affiliations":[{"id":36189,"text":"National Park Service","active":true,"usgs":false}],"preferred":false,"id":879087,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Vaughan, R. Greg 0000-0002-0850-6669","orcid":"https://orcid.org/0000-0002-0850-6669","contributorId":69030,"corporation":false,"usgs":true,"family":"Vaughan","given":"R.","email":"","middleInitial":"Greg","affiliations":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"preferred":true,"id":879088,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Manga, Michael 0000-0003-3286-4682","orcid":"https://orcid.org/0000-0003-3286-4682","contributorId":265640,"corporation":false,"usgs":false,"family":"Manga","given":"Michael","email":"","affiliations":[{"id":6609,"text":"UC Berkeley","active":true,"usgs":false}],"preferred":false,"id":879089,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70248461,"text":"70248461 - 2023 - Ecosystem resilience to invasion and drought: Insights after 24 years in a rare never-grazed grassland","interactions":[],"lastModifiedDate":"2023-09-20T16:28:46.57569","indexId":"70248461","displayToPublicDate":"2023-07-25T08:26:27","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1837,"text":"Global Change Biology","active":true,"publicationSubtype":{"id":10}},"title":"Ecosystem resilience to invasion and drought: Insights after 24 years in a rare never-grazed grassland","docAbstract":"<p><span>Understanding the resilience of ecosystems globally is hampered by the complex and interacting drivers of change characteristic of the Anthropocene. This is true for drylands of the western US, where widespread alteration of disturbance regimes and spread of invasive non-native species occurred with westward expansion during the 1800s, including the introduction of domestic livestock and spread of&nbsp;</span><i>Bromus tectorum</i><span>, an invasive non-native annual grass. In addition, this region has experienced a multi-decadal drought not seen for at least 1200 years with potentially large and interacting impacts on native plant communities. Here, we present 24 years of twice-annual plant cover monitoring (1997–2021) from a semiarid grassland never grazed by domestic livestock but subject to a patchy invasion of&nbsp;</span><i>B. tectorum</i><span>&nbsp;beginning in ~1994, compare our findings to surveys done in 1967, and examine potential climate drivers of plant community changes. We found a significant warming trend in the study area, with more than 75% of study year temperatures being warmer than average (1966–2021). We observed a native perennial grass community with high resilience to climate forcings with cover values like those in 1967. In invaded patches,&nbsp;</span><i>B. tectorum</i><span>&nbsp;cover was greatest in the early years of this study (1997–2001; ~20%–40%) but was subsequently constrained by climate and subtle variation in soils, with limited evidence of long-term impacts to native vegetation, contradicting earlier studies. Our ability to predict year-to-year variation in functional group and species cover with climate metrics varied, with a 12-month integrated index and fall and winter patterns appearing most important. However, declines to near zero live cover in recent years in response to regional drought intensification leave questions regarding the resiliency of intact grasslands to ongoing aridification and whether the vegetation observations reported here may be a leading indicator of impending change in this protected ecosystem.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/gcb.16882","usgsCitation":"Duniway, M.C., Finger-Higgens, R.A., Geiger, E.L., Hoover, D.L., Pfennigwerth, A., Knight, A.C., Van Scoyoc, M., Miller, M.E., and Belnap, J., 2023, Ecosystem resilience to invasion and drought: Insights after 24 years in a rare never-grazed grassland: Global Change Biology, v. 29, no. 20, p. 5866-5880, https://doi.org/10.1111/gcb.16882.","productDescription":"15 p.","startPage":"5866","endPage":"5880","ipdsId":"IP-150102","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":420786,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Utah","otherGeospatial":"Canyonlands National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -109.92361009252319,\n              38.13054587425847\n            ],\n            [\n              -109.92361009252319,\n              38.06214049445521\n            ],\n            [\n              -109.81482092284942,\n              38.06214049445521\n            ],\n            [\n              -109.81482092284942,\n              38.13054587425847\n            ],\n            [\n              -109.92361009252319,\n              38.13054587425847\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"29","issue":"20","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Duniway, Michael C. 0000-0002-9643-2785 mduniway@usgs.gov","orcid":"https://orcid.org/0000-0002-9643-2785","contributorId":4212,"corporation":false,"usgs":true,"family":"Duniway","given":"Michael","email":"mduniway@usgs.gov","middleInitial":"C.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":882997,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Finger-Higgens, Rebecca A 0000-0002-7645-504X","orcid":"https://orcid.org/0000-0002-7645-504X","contributorId":290211,"corporation":false,"usgs":true,"family":"Finger-Higgens","given":"Rebecca","email":"","middleInitial":"A","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":882998,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Geiger, Erika L. 0000-0003-4546-3503","orcid":"https://orcid.org/0000-0003-4546-3503","contributorId":207502,"corporation":false,"usgs":true,"family":"Geiger","given":"Erika","email":"","middleInitial":"L.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":882999,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hoover, David L. dlhoover@usgs.gov","contributorId":245331,"corporation":false,"usgs":false,"family":"Hoover","given":"David","email":"dlhoover@usgs.gov","middleInitial":"L.","affiliations":[{"id":49151,"text":"USDA-ARS Rangeland Resources Research Unit, Crops Research Laboratory, Fort Collins, CO","active":true,"usgs":false}],"preferred":false,"id":883000,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Pfennigwerth, Alix 0000-0001-5102-7324","orcid":"https://orcid.org/0000-0001-5102-7324","contributorId":207295,"corporation":false,"usgs":true,"family":"Pfennigwerth","given":"Alix","email":"","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":883001,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Knight, Anna C. 0000-0002-9455-2855","orcid":"https://orcid.org/0000-0002-9455-2855","contributorId":255113,"corporation":false,"usgs":true,"family":"Knight","given":"Anna","email":"","middleInitial":"C.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":883002,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Van Scoyoc, M.","contributorId":329694,"corporation":false,"usgs":false,"family":"Van Scoyoc","given":"M.","affiliations":[{"id":78691,"text":"National Park Service, Southeast Utah Group Parks, Moab, UT","active":true,"usgs":false}],"preferred":false,"id":883003,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Miller, Mark E.","contributorId":91580,"corporation":false,"usgs":false,"family":"Miller","given":"Mark","email":"","middleInitial":"E.","affiliations":[{"id":6959,"text":"National Park Service Southeast Utah Group","active":true,"usgs":false}],"preferred":false,"id":883004,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Belnap, Jayne 0000-0001-7471-2279 jayne_belnap@usgs.gov","orcid":"https://orcid.org/0000-0001-7471-2279","contributorId":1332,"corporation":false,"usgs":true,"family":"Belnap","given":"Jayne","email":"jayne_belnap@usgs.gov","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":883005,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70247926,"text":"70247926 - 2023 - Spatio-temporal variability in the strength, directionality, and relative importance of climate on occupancy and population densities in a philopatric mammal, the American pika (Ochotona princeps)","interactions":[],"lastModifiedDate":"2023-08-24T13:18:36.766188","indexId":"70247926","displayToPublicDate":"2023-07-25T08:09:23","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3910,"text":"Frontiers in Ecology and Evolution","onlineIssn":"2296-701X","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Spatio-temporal variability in the strength, directionality, and relative importance of climate on occupancy and population densities in a philopatric mammal, the American pika (<i>Ochotona princeps</i>)","title":"Spatio-temporal variability in the strength, directionality, and relative importance of climate on occupancy and population densities in a philopatric mammal, the American pika (Ochotona princeps)","docAbstract":"<p><span>Species distribution models (SDMs) have been widely employed to evaluate species–environment relationships. However, when extrapolated over broad spatial scales or through time, these models decline in their predictive ability due to variation in how species respond to their environment. Many models assume species–environment relationships remain constant over space and time, hindering their ability to accurately forecast distributions. Therefore, there is growing recognition that models could be improved by accounting for spatio-temporal nonstationarity – a phenomenon wherein the factors governing ecological processes change over space or time. Here, we investigated nonstationarity in American pika (</span><i>Ochotona princeps</i><span>) relationships with climatic variables in the Rocky Mountains (USA). We first compared broad-scale differences in pika–climate patterns for occupancy and population density across the Southern, Central, and Northern Rockies. Next, we investigated within-ecoregion variation across four mountain ranges nested within the Northern Rockies. Lastly, we tested whether species–climate relationships changed over time within the Central Rockies ecoregion. Across all analyses, we found varying levels of nonstationarity among the climate metrics for both occupancy and density. Although we found general congruence in temperature metrics, which consistently had negative coefficients, and moisture metrics (e.g., relative humidity), which had positive coefficients, nonstationarity was greatest for summer and winter precipitation over both space and time. These results suggest that interpretations from one ecoregion should not be applied to other regions universally – especially when using precipitation metrics. The within-ecoregion analysis found much greater variation in the strength-of-relationship coefficients among the four mountain ranges, relative to the inter-regional analysis, possibly attributable to smaller sample sizes per mountain range. Lastly, the importance of several variables shifted through time from significant to insignificant in the temporal analysis. Our results collectively reveal the overall complexity underlying species–environment relationships. With rapidly shifting conditions globally, this work adds to the growing body of literature highlighting how issues of spatio-temporal nonstationarity can limit the accuracy, transferability, and reliability of models and that interpretations will likely be most robust at local to regional scales. Diagnosing, describing, and incorporating nonstationarity of species–climate relationships into models over space and time could serve as a pivotal step in creating more informative models.</span></p>","language":"English","publisher":"Frontiers Media","doi":"10.3389/fevo.2023.1202610","usgsCitation":"Billman, P.D., Beever, E.A., Westover, M.L., and Ryals, D., 2023, Spatio-temporal variability in the strength, directionality, and relative importance of climate on occupancy and population densities in a philopatric mammal, the American pika (Ochotona princeps): Frontiers in Ecology and Evolution, v. 11, 1202610, 13 p., https://doi.org/10.3389/fevo.2023.1202610.","productDescription":"1202610, 13 p.","ipdsId":"IP-152205","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":442659,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3389/fevo.2023.1202610","text":"Publisher Index Page"},{"id":435244,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9WB1EWC","text":"USGS data release","linkHelpText":"Climatic data associated with American-pika survey (2011-2021) locations in 3 regions of the Rocky Mountains"},{"id":420114,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"11","noUsgsAuthors":false,"publicationDate":"2023-07-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Billman, Peter D.","contributorId":311242,"corporation":false,"usgs":false,"family":"Billman","given":"Peter","email":"","middleInitial":"D.","affiliations":[{"id":67370,"text":"University of Connecticut, Dept. of Ecology and Evolution","active":true,"usgs":false}],"preferred":false,"id":881024,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Beever, Erik A. 0000-0002-9369-486X ebeever@usgs.gov","orcid":"https://orcid.org/0000-0002-9369-486X","contributorId":2934,"corporation":false,"usgs":true,"family":"Beever","given":"Erik","email":"ebeever@usgs.gov","middleInitial":"A.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":881025,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Westover, Marie L.","contributorId":274853,"corporation":false,"usgs":false,"family":"Westover","given":"Marie","email":"","middleInitial":"L.","affiliations":[{"id":48790,"text":"Dept. of Biology, University of New Mexico","active":true,"usgs":false}],"preferred":false,"id":881026,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ryals, Dylan K.","contributorId":328675,"corporation":false,"usgs":false,"family":"Ryals","given":"Dylan K.","affiliations":[{"id":78450,"text":"Dept. of Entomology, Purdue University, West Lafayette, IN","active":true,"usgs":false}],"preferred":false,"id":881027,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70247704,"text":"70247704 - 2023 - Accuracy of finite fault slip estimates in subduction zone regions with topographic Green's functions and seafloor geodesy","interactions":[],"lastModifiedDate":"2023-08-14T12:25:52.922387","indexId":"70247704","displayToPublicDate":"2023-07-25T07:24:37","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":7167,"text":"Journal of Geophysical Research: Solid Earth","active":true,"publicationSubtype":{"id":10}},"title":"Accuracy of finite fault slip estimates in subduction zone regions with topographic Green's functions and seafloor geodesy","docAbstract":"<div class=\"article-section__content en main\"><p>Until recently, the lack of seafloor geodetic instrumentation and the use of unrealistically simple, half-space based forward models have resulted in poor resolution of near-trench slip in subduction zone settings. Here, we use a synthetic framework to investigate the impact of topography and geodetic data distribution on coseismic slip estimates in various subduction zone settings. We calculate surface displacements in two synthetic topographic domains that have topography similar to that of Chile and Japan, respectively. We then attempt to image target slip distributions by using a Bayesian approach to solve for slip with two sets of Green's functions—one that accounts for topography and one that does not—and five sets of 50 or more observation points selected from the synthetic surface displacements. Three of these sets of observation points are entirely onland, and two include 5–10 seafloor geodetic sites. We find that the use of topographic Green's functions always improves inferred slip models, and with seafloor geodetic data, it enables an almost perfect recovery of a target slip model, even in the near-trench region. Critically, our results demonstrate that it would be impossible for non-topographic Green's functions to properly recover the true slip distribution, particularly in the near-trench region. We also perform a parameter study with approximately 4,000 slip models estimated using a least-square approach, and find that topographic Green's functions yield significantly more accurate slip models in cases where good data (well distributed and reasonably dense) are available, even in the absence of seafloor geodetic sites.</p></div>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2023JB026559","usgsCitation":"Langer, L., and Ragon, T., 2023, Accuracy of finite fault slip estimates in subduction zone regions with topographic Green's functions and seafloor geodesy: Journal of Geophysical Research: Solid Earth, v. 128, no. 8, e2023JB026559, 16 p., https://doi.org/10.1029/2023JB026559.","productDescription":"e2023JB026559, 16 p.","ipdsId":"IP-150116","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":498232,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2023jb026559","text":"Publisher Index Page"},{"id":419759,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"128","issue":"8","noUsgsAuthors":false,"publicationDate":"2023-08-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Langer, Leah 0000-0002-5384-0500","orcid":"https://orcid.org/0000-0002-5384-0500","contributorId":298853,"corporation":false,"usgs":true,"family":"Langer","given":"Leah","email":"","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":880106,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ragon, Thea 0000-0002-1276-1910","orcid":"https://orcid.org/0000-0002-1276-1910","contributorId":328411,"corporation":false,"usgs":false,"family":"Ragon","given":"Thea","email":"","affiliations":[{"id":13711,"text":"Caltech","active":true,"usgs":false}],"preferred":false,"id":880107,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
]}