{"pageNumber":"282","pageRowStart":"7025","pageSize":"25","recordCount":184769,"records":[{"id":70242961,"text":"pp1885A - 2023 - Introduction to study area hydrogeology, chromium sources, site history, and purpose of study","interactions":[{"subject":{"id":70242961,"text":"pp1885A - 2023 - Introduction to study area hydrogeology, chromium sources, site history, and purpose of study","indexId":"pp1885A","publicationYear":"2023","noYear":false,"chapter":"A","displayTitle":"Introduction to Study Area Hydrogeology, Chromium Sources, Site History, and Purpose of Study","title":"Introduction to study area hydrogeology, chromium sources, site history, and purpose of study"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":1}],"isPartOf":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"lastModifiedDate":"2024-06-26T15:21:50.062506","indexId":"pp1885A","displayToPublicDate":"2023-04-25T19:44:01","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":331,"text":"Professional Paper","code":"PP","onlineIssn":"2330-7102","printIssn":"1044-9612","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1885","chapter":"A","displayTitle":"Introduction to Study Area Hydrogeology, Chromium Sources, Site History, and Purpose of Study","title":"Introduction to study area hydrogeology, chromium sources, site history, and purpose of study","docAbstract":"<p>Between 1952 and 1964, hexavalent chromium, Cr(VI), was released into groundwater from the Pacific Gas and Electric Company (PG&amp;E) Hinkley compressor station in the Mojave Desert 80 miles (mi) northeast of Los Angeles, California. Remediation began in 1992, and in 2010, site cleanup was projected to require between 10 and 95 years and was expected to cost between $36 and $176 million. A 2007 PG&amp;E study estimated the natural Cr(VI) background in groundwater in Hinkley Valley to be 3.1 micrograms per liter (μg/L). This concentration was used for interim regulatory purposes by the Lahontan Regional Water Quality Control Board (RWQCB). In the fourth quarter (October–December) 2015, the regulatory Cr(VI) plume extended about 3.0 mi downgradient from the release location within the Hinkley compressor station, while groundwater having Cr(VI) concentrations greater than 3.1 μg/L was present more than 8 mi downgradient. Although rocks and minerals in the area are naturally low in chromium, alluvium eroded from the San Gabriel Mountains and transported to Hinkley Valley by the Mojave River, and locally small exposures of mafic rock, including hornblende diorite and basalt, may contribute Cr(VI) to groundwater. In response to limitations of the PG&amp;E 2007 Cr(VI) background study’s methodology, uncertainty in the natural Cr(VI) background concentration, and an increase in the mapped extent of groundwater having Cr(VI) concentrations greater than the interim regulatory background of 3.1 μg/L, the Lahontan RWQCB concluded that the 2007 PG&amp;E background Cr(VI) study should be updated. The purpose of the updated study is to estimate background Cr(VI) concentrations in groundwater within the upper aquifer upgradient, downgradient, near the margins, and within the footprint of the PG&amp;E Cr(VI) plume in Hinkley, California. The scope of the study included eight tasks; results from those tasks are presented in the chapters within this professional paper.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/pp1885A","collaboration":"Prepared in cooperation with the Lahontan Regional Water Quality Control Board","usgsCitation":"Izbicki, J.A., Groover, K.D., Miller, D.M., Seymour, W., Warden, J.G., and Miller, L.G., 2023, Introduction to study area hydrogeology, chromium sources, site history, and purpose of study, Chapter A <em>of</em> Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California: U.S. Geological Survey Professional Paper 1885-A, 20 p., https://doi.org/10.3133/pp1885A.","productDescription":"Report: viii, 20 p.; Data Release","numberOfPages":"20","additionalOnlineFiles":"Y","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":416211,"rank":3,"type":{"id":34,"text":"Image Folder"},"url":"https://pub.usgs.gov/pp/1885/a/images"},{"id":416213,"rank":5,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/pp/1885/a/pp1885A.xml"},{"id":416210,"rank":2,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/pp/1885/a/covrthb.jpg"},{"id":416209,"rank":1,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9CU0EH3","text":"Field portable X-ray fluorescence and associated quality control data for the western Mojave Desert, San Bernardino County, California","description":"Groover, K.D., and Izbicki, J.A., 2018, Field portable X-ray fluorescence and associated quality control data for the western Mojave Desert, San Bernardino County, California: U.S. Geological Survey data release, https://doi.org/10.5066/P9CU0EH3."},{"id":416212,"rank":4,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/pp/1885/a/pp1885a.pdf","text":"Report","size":"9 MB","linkFileType":{"id":1,"text":"pdf"}},{"id":417459,"rank":6,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/ofr20231043","text":"Open-File Report 2023-1043","linkHelpText":"- Natural and Anthropogenic Hexavalent Chromium, Cr(VI), in Groundwater near a Mapped Plume, Hinkley, California"}],"country":"United States","state":"California","city":"Hinkley","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -116,\n              35.25\n            ],\n            [\n              -117.75,\n              35.25\n            ],\n            [\n              -117.75,\n              34.25\n            ],\n            [\n              -116,\n              34.25\n            ],\n            [\n              -116,\n              35.25\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_ca@usgs.gov\" data-mce-href=\"mailto:dc_ca@usgs.gov\">Director</a>,<br><a href=\"https://ca.water.usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://ca.water.usgs.gov\">California Water Science Center</a><br><a href=\"https://usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://usgs.gov\">U.S. Geological Survey</a><br>6000 J Street, Placer Hall<br>Sacramento, California 95819</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>A.1 Introduction</li><li>A.2 Hydrogeology</li><li>A.3 Chromium in Rock and Alluvium within the Mojave River Drainage</li><li>A.4 Site History</li><li>A.5 Purpose and Scope of the USGS Hexavalent Chromium Background Study</li><li>A.6 References Cited</li></ul>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2023-04-25","noUsgsAuthors":false,"publicationDate":"2023-04-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Izbicki, John A. 0000-0003-0816-4408 jaizbick@usgs.gov","orcid":"https://orcid.org/0000-0003-0816-4408","contributorId":152474,"corporation":false,"usgs":true,"family":"Izbicki","given":"John","email":"jaizbick@usgs.gov","middleInitial":"A.","affiliations":[{"id":493,"text":"Office of Ground Water","active":true,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":870356,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Groover, Krishangi D. 0000-0002-5805-8913 kgroover@usgs.gov","orcid":"https://orcid.org/0000-0002-5805-8913","contributorId":5626,"corporation":false,"usgs":true,"family":"Groover","given":"Krishangi","email":"kgroover@usgs.gov","middleInitial":"D.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":false,"id":870357,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Miller, David M. 0000-0003-3711-0441 dmiller@usgs.gov","orcid":"https://orcid.org/0000-0003-3711-0441","contributorId":140769,"corporation":false,"usgs":true,"family":"Miller","given":"David M.","email":"dmiller@usgs.gov","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true},{"id":309,"text":"Geology and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":870358,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Seymour, Whitney A. 0000-0002-5999-6573 wseymour@usgs.gov","orcid":"https://orcid.org/0000-0002-5999-6573","contributorId":4131,"corporation":false,"usgs":true,"family":"Seymour","given":"Whitney","email":"wseymour@usgs.gov","middleInitial":"A.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":870359,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Warden, John G. 0000-0003-1384-458X","orcid":"https://orcid.org/0000-0003-1384-458X","contributorId":215846,"corporation":false,"usgs":true,"family":"Warden","given":"John","email":"","middleInitial":"G.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":870360,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Miller, Laurence G. lgmiller@usgs.gov","contributorId":304413,"corporation":false,"usgs":true,"family":"Miller","given":"Laurence","email":"lgmiller@usgs.gov","middleInitial":"G.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":870361,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","interactions":[{"subject":{"id":70242961,"text":"pp1885A - 2023 - Introduction to study area hydrogeology, chromium sources, site history, and purpose of study","indexId":"pp1885A","publicationYear":"2023","noYear":false,"chapter":"A","displayTitle":"Introduction to Study Area Hydrogeology, Chromium Sources, Site History, and Purpose of Study","title":"Introduction to study area hydrogeology, chromium sources, site history, and purpose of study"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":1},{"subject":{"id":70242994,"text":"pp1885B - 2023 - Survey of chromium and selected element concentrations in rock, alluvium, and core material","indexId":"pp1885B","publicationYear":"2023","noYear":false,"chapter":"B","displayTitle":"Survey of Chromium and Selected Element Concentrations in Rock, Alluvium, and Core Material","title":"Survey of chromium and selected element concentrations in rock, alluvium, and core material"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":2},{"subject":{"id":70242995,"text":"pp1885C - 2023 - Chromium in minerals and selected aquifer materials","indexId":"pp1885C","publicationYear":"2023","noYear":false,"chapter":"C","displayTitle":"Chromium in Minerals and Selected Aquifer Materials","title":"Chromium in minerals and selected aquifer materials"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":3},{"subject":{"id":70242996,"text":"pp1885D - 2023 - Analyses of regulatory water-quality data","indexId":"pp1885D","publicationYear":"2023","noYear":false,"chapter":"D","displayTitle":"Analyses of Regulatory Water-Quality Data","title":"Analyses of regulatory water-quality data"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":4},{"subject":{"id":70242997,"text":"pp1885E - 2023 - Groundwater chemistry and hexavalent chromium","indexId":"pp1885E","publicationYear":"2023","noYear":false,"chapter":"E","displayTitle":"Groundwater Chemistry and Hexavalent Chromium","title":"Groundwater chemistry and hexavalent chromium"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":5},{"subject":{"id":70242998,"text":"pp1885F - 2023 - Environmental tracers of groundwater source, age, and geochemical evolution","indexId":"pp1885F","publicationYear":"2023","noYear":false,"chapter":"F","displayTitle":"Environmental Tracers of Groundwater Source, Age, and Geochemical Evolution","title":"Environmental tracers of groundwater source, age, and geochemical evolution"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 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2023 - Predevelopment water levels, groundwater recharge, and selected hydrologic properties of aquifer materials, Hinkley and Water Valleys, California","indexId":"pp1885H","publicationYear":"2023","noYear":false,"chapter":"H","displayTitle":"Predevelopment Water Levels, Groundwater Recharge, and Selected Hydrologic Properties of Aquifer Materials, Hinkley and Water Valleys, California","title":"Predevelopment water levels, groundwater recharge, and selected hydrologic properties of aquifer materials, Hinkley and Water Valleys, California"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":8},{"subject":{"id":70243001,"text":"pp1885I - 2023 - Sequestration and reoxidation of chromium in experimental microcosms","indexId":"pp1885I","publicationYear":"2023","noYear":false,"chapter":"I","displayTitle":"Sequestration and Reoxidation of Chromium in Experimental Microcosms","title":"Sequestration and reoxidation of chromium in experimental microcosms"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":9},{"subject":{"id":70243002,"text":"pp1885J - 2023 - Summary and conclusions","indexId":"pp1885J","publicationYear":"2023","noYear":false,"chapter":"J","displayTitle":"Summary and Conclusions","title":"Summary and conclusions"},"predicate":"IS_PART_OF","object":{"id":70242957,"text":"pp1885 - 2023 - Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","indexId":"pp1885","publicationYear":"2023","noYear":false,"title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California"},"id":10}],"lastModifiedDate":"2026-02-19T17:41:14.219705","indexId":"pp1885","displayToPublicDate":"2023-04-25T19:42:40","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":331,"text":"Professional Paper","code":"PP","onlineIssn":"2330-7102","printIssn":"1044-9612","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1885","displayTitle":"Natural and Anthropogenic (Human-Made) Hexavalent Chromium, Cr(VI), in Groundwater near a Mapped Plume, Hinkley, California","title":"Natural and anthropogenic (human-made) hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California","docAbstract":"<div><div class=\"abstract-contents\"><p>Between 1952 and 1964, hexavalent chromium, Cr(VI), was released into groundwater from the Pacific Gas and Electric Company (PG&amp;E) Hinkley compressor station in the Mojave Desert 80 miles (mi) northeast of Los Angeles, California. Remediation began in 1992, and in 2010, site cleanup was projected to require between 10 and 95 years and was expected to cost between $36 and $176 million. A 2007 PG&amp;E study estimated the natural Cr(VI) background in groundwater in Hinkley Valley to be 3.1 micrograms per liter (μg/L). This concentration was used for interim regulatory purposes by the Lahontan Regional Water Quality Control Board (RWQCB). In the fourth quarter (October–December) 2015, the regulatory Cr(VI) plume extended about 3.0 mi downgradient from the release location within the Hinkley compressor station, while groundwater having Cr(VI) concentrations greater than 3.1 μg/L was present more than 8 mi downgradient. Although rocks and minerals in the area are naturally low in chromium, alluvium eroded from the San Gabriel Mountains and transported to Hinkley Valley by the Mojave River, and locally small exposures of mafic rock, including hornblende diorite and basalt, may contribute Cr(VI) to groundwater. In response to limitations of the PG&amp;E 2007 Cr(VI) background study’s methodology, uncertainty in the natural Cr(VI) background concentration, and an increase in the mapped extent of groundwater having Cr(VI) concentrations greater than the interim regulatory background of 3.1 μg/L, the Lahontan RWQCB concluded that the 2007 PG&amp;E background Cr(VI) study should be updated. The purpose of the updated study is to estimate background Cr(VI) concentrations in groundwater within the upper aquifer upgradient, downgradient, near the margins, and within the footprint of the PG&amp;E Cr(VI) plume in Hinkley, California. 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Report documents can be found at the chapter links below."},{"id":416208,"rank":2,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/pp/1885/pp1885.xml"},{"id":416207,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/pp/1885/covrthb.jpg"},{"id":500203,"rank":6,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_114698.htm","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"California","city":"Hinkley","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -116,\n              35.25\n            ],\n            [\n              -117.75,\n              35.25\n            ],\n            [\n              -117.75,\n              34.25\n            ],\n            [\n              -116,\n              34.25\n            ],\n            [\n              -116,\n              35.25\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_ca@usgs.gov\" data-mce-href=\"mailto:dc_ca@usgs.gov\">Director</a>,<br><a href=\"https://ca.water.usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://ca.water.usgs.gov\">California Water Science Center</a><br><a href=\"https://usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://usgs.gov\">U.S. Geological Survey</a><br>6000 J Street, Placer Hall<br>Sacramento, California 95819</p>","tableOfContents":"<p><br data-mce-bogus=\"1\"></p>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2023-04-25","noUsgsAuthors":false,"publicationDate":"2023-04-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Izbicki, John A. 0000-0003-0816-4408 jaizbick@usgs.gov","orcid":"https://orcid.org/0000-0003-0816-4408","contributorId":152474,"corporation":false,"usgs":true,"family":"Izbicki","given":"John","email":"jaizbick@usgs.gov","middleInitial":"A.","affiliations":[{"id":493,"text":"Office of Ground Water","active":true,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":870350,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70256481,"text":"70256481 - 2023 - Ancient bears provide insights into Pleistocene ice age refugia in Southeast Alaska","interactions":[],"lastModifiedDate":"2024-08-07T14:43:35.796534","indexId":"70256481","displayToPublicDate":"2023-04-25T09:35:56","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2774,"text":"Molecular Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Ancient bears provide insights into Pleistocene ice age refugia in Southeast Alaska","docAbstract":"<p><span>During the Late Pleistocene, major parts of North America were periodically covered by ice sheets. However, there are still questions about whether ice-free refugia were present in the Alexander Archipelago along the Southeast (SE) Alaska coast during the last glacial maximum (LGM). Numerous subfossils have been recovered from caves in SE Alaska, including American black (</span><i>Ursus americanus</i><span>) and brown (</span><i>U. arctos</i><span>) bears, which today are found in the Alexander Archipelago but are genetically distinct from mainland bear populations. Hence, these bear species offer an ideal system to investigate long-term occupation, potential refugial survival and lineage turnover. Here, we present genetic analyses based on 99 new complete mitochondrial genomes from ancient and modern brown and black bears spanning the last ~45,000 years. Black bears form two SE Alaskan subclades, one preglacial and another postglacial, that diverged &gt;100,000 years ago. All postglacial ancient brown bears are closely related to modern brown bears in the archipelago, while a single preglacial brown bear is found in a distantly related clade. A hiatus in the bear subfossil record around the LGM and the deep split of their pre- and postglacial subclades fail to support a hypothesis of continuous occupancy in SE Alaska throughout the LGM for either species. Our results are consistent with an absence of refugia along the SE Alaska coast, but indicate that vegetation quickly expanded after deglaciation, allowing bears to recolonize the area after a short-lived LGM peak.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/mec.16960","usgsCitation":"da Silva Coelho, F.A., Gill, S., Tomlin, C.M., Papavassiliou, M., Farley, S.D., Cook, J., Sonsthagen, S.A., Sage, G.K., Heaton, T.H., Talbot, S., and Lindqvist, C., 2023, Ancient bears provide insights into Pleistocene ice age refugia in Southeast Alaska: Molecular Ecology, v. 32, no. 13, p. 3641-3656, https://doi.org/10.1111/mec.16960.","productDescription":"16 p.","startPage":"3641","endPage":"3656","ipdsId":"IP-147539","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":443727,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/mec.16960","text":"Publisher Index Page"},{"id":432338,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -133.54442279405686,\n              54.34658810457864\n            ],\n            [\n              -130.68951983788753,\n              54.54526333207045\n            ],\n            [\n              -130.14481684011088,\n              56.044252529548004\n            ],\n            [\n              -132.2953979712057,\n              57.1016826102489\n            ],\n            [\n              -135.45938416329437,\n              59.77166224533508\n            ],\n            [\n              -137.82552158329688,\n              58.768051439466774\n            ],\n            [\n              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D.","contributorId":340801,"corporation":false,"usgs":false,"family":"Farley","given":"Sean","email":"","middleInitial":"D.","affiliations":[{"id":81667,"text":"Alaska Department of Game and Fish","active":true,"usgs":false}],"preferred":false,"id":907567,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Cook, Joseph A.","contributorId":340802,"corporation":false,"usgs":false,"family":"Cook","given":"Joseph A.","affiliations":[{"id":36307,"text":"University of New Mexico","active":true,"usgs":false}],"preferred":false,"id":907568,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Sonsthagen, Sarah A. 0000-0001-6215-5874 ssonsthagen@usgs.gov","orcid":"https://orcid.org/0000-0001-6215-5874","contributorId":3711,"corporation":false,"usgs":true,"family":"Sonsthagen","given":"Sarah","email":"ssonsthagen@usgs.gov","middleInitial":"A.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":907569,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Sage, George K.","contributorId":340803,"corporation":false,"usgs":false,"family":"Sage","given":"George","email":"","middleInitial":"K.","affiliations":[{"id":63248,"text":"Far Northwestern Institute of Art and Science","active":true,"usgs":false}],"preferred":false,"id":907570,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Heaton, Timothy H.","contributorId":340804,"corporation":false,"usgs":false,"family":"Heaton","given":"Timothy","email":"","middleInitial":"H.","affiliations":[{"id":16684,"text":"University of South Dakota","active":true,"usgs":false}],"preferred":false,"id":907571,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Talbot, Sandra L.","contributorId":340805,"corporation":false,"usgs":false,"family":"Talbot","given":"Sandra L.","affiliations":[{"id":63248,"text":"Far Northwestern Institute of Art and Science","active":true,"usgs":false}],"preferred":false,"id":907572,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Lindqvist, Charlotte","contributorId":340806,"corporation":false,"usgs":false,"family":"Lindqvist","given":"Charlotte","affiliations":[{"id":37334,"text":"University at Buffalo","active":true,"usgs":false}],"preferred":false,"id":907573,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70243157,"text":"70243157 - 2023 - Surface fault displacement models for strike-slip faults","interactions":[],"lastModifiedDate":"2023-05-02T13:37:26.855089","indexId":"70243157","displayToPublicDate":"2023-04-25T08:32:25","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":3,"text":"Organization Series"},"seriesTitle":{"id":14266,"text":"Report GIRS","active":true,"publicationSubtype":{"id":3}},"seriesNumber":"2022-07","title":"Surface fault displacement models for strike-slip faults","docAbstract":"<p><span> Fault displacement models (FDMs) are an essential component of the probabilistic fault displacement hazard analyses (PFDHA), much like ground motion models in the probabilistic seismic hazard analyses for ground motion hazards. In this study, we develop several principal surface FDMs for strike-slip earthquakes. The model development is based on analyses of the new and comprehensive fault displacement database developed as part of the Fault Displacement Hazard Initiative project led by the University of California, Los Angeles. The main objective of our study is to update the FDMs that were developed over a decade ago by the U.S. Geological Survey and California Geological Survey, in which a reference trace was drawn manually, FDMs are fixed-effect models for lateral displacement, displacement on multiple subparallel ruptures is not aggregated, magnitude (M) scaling is linear, and natural logarithm of displacement is assumed to be normally distributed.</span></p>","language":"English","publisher":"B. John Garrick Institute for the Risk Sciences, University of California, Los Angeles","doi":"10.34948/N3RG6X","usgsCitation":"Chiou, B.S., Chen, R., Thomas, K., Milliner, C.W., Dawson, T., and Petersen, M.D., 2023, Surface fault displacement models for strike-slip faults: Report GIRS 2022-07, xviii, 168 p., https://doi.org/10.34948/N3RG6X.","productDescription":"xviii, 168 p.","ipdsId":"IP-150187","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":416616,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Chiou, Brian S. J.","contributorId":304664,"corporation":false,"usgs":false,"family":"Chiou","given":"Brian","email":"","middleInitial":"S. J.","affiliations":[{"id":34112,"text":"California Department of Transportation","active":true,"usgs":false}],"preferred":false,"id":871300,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chen, Rui","contributorId":304665,"corporation":false,"usgs":false,"family":"Chen","given":"Rui","affiliations":[{"id":12640,"text":"California Geological Survey","active":true,"usgs":false}],"preferred":false,"id":871301,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Thomas, Kate","contributorId":304666,"corporation":false,"usgs":false,"family":"Thomas","given":"Kate","email":"","affiliations":[{"id":12640,"text":"California Geological Survey","active":true,"usgs":false}],"preferred":false,"id":871302,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Milliner, Christopher W. D.","contributorId":304667,"corporation":false,"usgs":false,"family":"Milliner","given":"Christopher","email":"","middleInitial":"W. D.","affiliations":[{"id":7218,"text":"California Institute of Technology","active":true,"usgs":false}],"preferred":false,"id":871303,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dawson, Timothy E.","contributorId":304669,"corporation":false,"usgs":false,"family":"Dawson","given":"Timothy E.","affiliations":[{"id":12640,"text":"California Geological Survey","active":true,"usgs":false}],"preferred":false,"id":871304,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Petersen, Mark D. 0000-0001-8542-3990 mpetersen@usgs.gov","orcid":"https://orcid.org/0000-0001-8542-3990","contributorId":1163,"corporation":false,"usgs":true,"family":"Petersen","given":"Mark","email":"mpetersen@usgs.gov","middleInitial":"D.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true},{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":871305,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70243166,"text":"70243166 - 2023 - Management of vampire bats and rabies: Past, present, and future","interactions":[],"lastModifiedDate":"2023-05-02T12:22:36.866884","indexId":"70243166","displayToPublicDate":"2023-04-25T07:18:12","publicationYear":"2023","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Management of vampire bats and rabies: Past, present, and future","docAbstract":"<p>Rabies virus transmitted via the bite of common vampire bats (<i>Desmodus rotundus</i>) has surpassed canine-associated cases as the predominant cause of human rabies in Latin America. Cattle, the preferred prey of<span>&nbsp;</span><i>D. rotundus</i>, suffer extensive mortality from vampire bat associated rabies, with annual financial losses estimated in the tens of millions of dollars. Organized attempts to manage or curtail vampire bat populations and rabies virus transmission have been conducted since the early 1900s, when vampire bat-associated rabies cases in humans and livestock were first recognized. However, these attempts largely failed, as the distribution of vampire bat populations expanded geographically with the intensification of livestock production, and the incidence of vampire bat rabies (VBR) increased. Current methods of control rely primarily on culling vampire bat populations using poisons (vampiricides) that are transferred from bat to bat after topical application. Despite widespread use of vampiricides for the last 50&nbsp;years, little evidence exists to demonstrate their effectiveness in reducing the incidence of VBR. Culling may further result in dispersion of bats, which could have an unintended consequence of spreading VBR. New methods to manage VBR are being developed or considered, including topical rabies vaccine that transfer among bats, much like vampiricides or a transmissible vaccine that would spread naturally among bats. Vaccination of vampire bats against rabies could lower the incidence of VBR and prevent viral transmission to cattle and humans without the animal welfare concerns and potential negative effects of culling. However, this approach would not deter vampire bat bites, and some form of population reduction (e.g., fertility control) would likely also be needed. An integrated strategy to reduce both the incidence of VBR and the abundance of vampire bats would be ideal for protecting both human and animal health.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"History of Rabies in the Americas: From the Pre-Columbian to the Present,","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Springer","doi":"10.1007/978-3-031-25052-1_8","usgsCitation":"Rocke, T.E., Streicker, D.G., and Leon, A.E., 2023, Management of vampire bats and rabies: Past, present, and future, chap. <i>of</i> History of Rabies in the Americas: From the Pre-Columbian to the Present,, p. 199-222, https://doi.org/10.1007/978-3-031-25052-1_8.","productDescription":"24 p.","startPage":"199","endPage":"222","ipdsId":"IP-128006","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":416611,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationDate":"2023-04-25","publicationStatus":"PW","contributors":{"authors":[{"text":"Rocke, Tonie E. 0000-0003-3933-1563 trocke@usgs.gov","orcid":"https://orcid.org/0000-0003-3933-1563","contributorId":2665,"corporation":false,"usgs":true,"family":"Rocke","given":"Tonie","email":"trocke@usgs.gov","middleInitial":"E.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":871327,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Streicker, Daniel G. 0000-0001-7475-2705","orcid":"https://orcid.org/0000-0001-7475-2705","contributorId":152378,"corporation":false,"usgs":false,"family":"Streicker","given":"Daniel","email":"","middleInitial":"G.","affiliations":[{"id":12473,"text":"University of Glasgow","active":true,"usgs":false}],"preferred":false,"id":871328,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Leon, Ariel Elizabeth 0000-0001-9246-4619","orcid":"https://orcid.org/0000-0001-9246-4619","contributorId":247573,"corporation":false,"usgs":true,"family":"Leon","given":"Ariel","email":"","middleInitial":"Elizabeth","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":871329,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70247426,"text":"70247426 - 2023 - Unzipping supercontinent Pangea: Geologic, potential field data, and buried structures, and a case for sequential Atlantic opening","interactions":[],"lastModifiedDate":"2023-08-07T12:17:52.956993","indexId":"70247426","displayToPublicDate":"2023-04-25T07:14:24","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3525,"text":"Tectonophysics","active":true,"publicationSubtype":{"id":10}},"title":"Unzipping supercontinent Pangea: Geologic, potential field data, and buried structures, and a case for sequential Atlantic opening","docAbstract":"<div id=\"abstracts\" class=\"Abstracts u-font-gulliver text-s\"><div id=\"ab0005\" class=\"abstract author\" lang=\"en\"><div id=\"as0005\"><p id=\"sp0035\">Amalgamation of Pangea culminated with zippered N-to-S closing of the Theic ocean during the Alleghanian orogeny. Transpressional-rotational collision produced widespread dextral faulting throughout the eastern Appalachian hinterland, and thrust faulting in the western hinterland and foreland. The partially buried southern Appalachian Eastern Piedmont fault system is a product of late Paleozoic transpressional dextral faulting. Eastern Piedmont fault system faults are cut by two 200–190&nbsp;Ma Central Atlantic Magmatic Province (CAMP) diabase dike sets (∼NW and N<img src=\"https://sdfestaticassets-us-east-1.sciencedirectassets.com/shared-assets/55/entities/sbnd.gif\" alt=\"single bond\" data-mce-src=\"https://sdfestaticassets-us-east-1.sciencedirectassets.com/shared-assets/55/entities/sbnd.gif\">S), which postdate initial rifting, producing the Late Triassic-Early Jurassic basins. Sinistral reactivation of suitably oriented Paleozoic faults (e.g., Towaliga) that offset Jurassic dikes implies faulting is coeval with CAMP dike emplacement, or occurred very soon after 200–190&nbsp;Ma dike emplacement. A large NE-striking sinistral fault (Estill fault) offsets magnetic and gravity highs in the Brunswick (Charleston) terrane in South Carolina and Georgia. This fault is at least 185&nbsp;km long, with ca. 75–80&nbsp;km maximum of sinistral separation. The Estill fault geometry agrees with the stress field associated with Central Atlantic Magmatic Province dike emplacement. We conclude that movement along the Estill and other sinistral faults represents Early Jurassic displacement that is well documented in eastern North America prior to Atlantic opening. The early Mesozoic post-failed rifting (basin formation) preceded dike emplacement and pre-spreading sinistral faulting. We recognize four stages in the Late Triassic–Jurassic tectonics and kinematics of eastern North America based on field, crosscutting relationships, and available geophysical data: (1) initial W-to-E failed transtensional rifting with formation of the S-to-N-younging Triassic-Jurassic basins; (2) CAMP diabase dikes intruded 200–190&nbsp;Ma; (3) sinistral movement of large blocks of crust in the North Atlantic region including southeastern North America; and (4) spreading and opening of the Atlantic Ocean 195–170&nbsp;Ma. These stages mark the reversal of Alleghanian rotational dextral transpressional (zippered) collision forming Pangea supercontinent and ‘unzipping’ the supercontinent prior to Atlantic opening.</p></div></div></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.tecto.2023.229842","usgsCitation":"Stubblefield, A.G., Hatcher, R.D., Horton,, J., and Daniels, D.L., 2023, Unzipping supercontinent Pangea: Geologic, potential field data, and buried structures, and a case for sequential Atlantic opening: Tectonophysics, v. 856, https://doi.org/10.1016/j.tecto.2023.229842.","productDescription":"229842, 10 p.","startPage":"229842 (1-10 online)","ipdsId":"IP-088030","costCenters":[{"id":242,"text":"Eastern Geographic Science Center","active":true,"usgs":true},{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"links":[{"id":443734,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index 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Wright Jr. 0000-0001-6756-6365","orcid":"https://orcid.org/0000-0001-6756-6365","contributorId":219824,"corporation":false,"usgs":true,"family":"Horton,","given":"J. Wright","suffix":"Jr.","affiliations":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"preferred":true,"id":879571,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Daniels, David L. 0000-0003-0599-8036 dave@usgs.gov","orcid":"https://orcid.org/0000-0003-0599-8036","contributorId":1792,"corporation":false,"usgs":true,"family":"Daniels","given":"David","email":"dave@usgs.gov","middleInitial":"L.","affiliations":[{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true}],"preferred":true,"id":879572,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70243015,"text":"70243015 - 2023 - The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration","interactions":[],"lastModifiedDate":"2023-04-26T12:11:39.748272","indexId":"70243015","displayToPublicDate":"2023-04-25T07:08:38","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":14257,"text":"Nature Based Solutions","active":true,"publicationSubtype":{"id":10}},"title":"The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration","docAbstract":"<div id=\"abstracts\" class=\"Abstracts u-font-gulliver text-s\"><div id=\"abs0001\" class=\"abstract author\"><div id=\"abss0001\"><p id=\"spara024\">Louisiana has high coastal wetland loss rates due to natural processes such as subsidence and anthropogenic activities such as construction of river levees and dams, pervasive alteration of surface hydrology by local industries such as oil and gas, and navigation. With the exception of the Atchafalaya River discharge area, most of Louisiana's marsh coastline is retreating and coastal marshes are degrading. In the inactive degrading delta regions, there exists a previously uncharacterized landform referred to colloquially as coastal ‘land bridge’ marshes. Land bridge marshes are saline or brackish marshes fronting large estuarine bays or lakes with sufficient fetch and wave energy to supply high levels of resuspended sediments to the marsh surface. They are generally linear features that are oriented parallel to the coast and the shoreline front retreats landward due to erosion from wave energy. These marshes persist over time vertically due to input of resuspended sediments but are experiencing rapid edge erosion due to wave attack. Comparison of data from Louisiana's Coastal Reference Monitoring System (CRMS) sites show that land bridge marshes have a greater frequency of higher soil surface elevation and higher soil bulk density than non-land bridge marshes. Because land bridges are vertically stable relative to other coastal wetlands, identification of measures to sustain these landscape features is important. Simulations using MarshMorpho2D, a process-based reduced-complexity morphology model, suggest that protection barriers installed on the seaward side of land bridge marshes will attenuate wave energy and, thus, edge erosion. Shoreline protection that can reduce wave energy but still allow sediment input to marshes include living shorelines, rock barriers, and/or breakwaters. Periodic thin layer nourishment of the marsh surface may be necessary to help sustain vertical growth. Further, marsh creation projects directly landward of land bridge marshes may benefit from their protection from waves and as a source of sediment. Consideration of land bridge marshes as distinct marsh types in the State Master Plan and integrated modeling could help to identify measures to sustain these landscape features.</p></div></div></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.nbsj.2023.100061","usgsCitation":"Day, J.W., Twilley, R.R., Freeman, A., Couvillion, B., Quirk, T., Jafari, N., Mariotti, G., Hunter, R., Norman, C., Kemp, G., White, J.R., and Meselhe, E., 2023, The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration: Nature Based Solutions, v. 3, 100061, 16 p., https://doi.org/10.1016/j.nbsj.2023.100061.","productDescription":"100061, 16 p.","ipdsId":"IP-150398","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":443737,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.nbsj.2023.100061","text":"Publisher Index Page"},{"id":416369,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Louisiana","otherGeospatial":"Mississippi River Delta","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -92.12197444730403,\n              31.054279968436333\n            ],\n            [\n              -92.12197444730403,\n              28.789280376645095\n            ],\n            [\n              -88.91534599819444,\n              28.789280376645095\n            ],\n            [\n              -88.91534599819444,\n              31.054279968436333\n            ],\n            [\n              -92.12197444730403,\n              31.054279968436333\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"3","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Day, John W.","contributorId":200323,"corporation":false,"usgs":false,"family":"Day","given":"John","email":"","middleInitial":"W.","affiliations":[{"id":5115,"text":"Louisiana State University","active":true,"usgs":false}],"preferred":false,"id":870582,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Twilley, Robert R.","contributorId":34585,"corporation":false,"usgs":false,"family":"Twilley","given":"Robert","email":"","middleInitial":"R.","affiliations":[{"id":5115,"text":"Louisiana State University","active":true,"usgs":false}],"preferred":false,"id":870583,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Freeman, Angelina","contributorId":223755,"corporation":false,"usgs":false,"family":"Freeman","given":"Angelina","affiliations":[{"id":40763,"text":"Coastal Protection and Restoration Authority","active":true,"usgs":false}],"preferred":false,"id":870584,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Couvillion, Brady 0000-0001-5323-1687","orcid":"https://orcid.org/0000-0001-5323-1687","contributorId":222810,"corporation":false,"usgs":true,"family":"Couvillion","given":"Brady","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":870585,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Quirk, Tracy","contributorId":208063,"corporation":false,"usgs":false,"family":"Quirk","given":"Tracy","email":"","affiliations":[{"id":37701,"text":"Academy of Natural Sciences of Drexel University, Philadelphia, Pa","active":true,"usgs":false}],"preferred":false,"id":870586,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Jafari, Navid H.","contributorId":214730,"corporation":false,"usgs":false,"family":"Jafari","given":"Navid H.","affiliations":[{"id":5115,"text":"Louisiana State University","active":true,"usgs":false}],"preferred":false,"id":870587,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Mariotti, Giulio","contributorId":207541,"corporation":false,"usgs":false,"family":"Mariotti","given":"Giulio","email":"","affiliations":[{"id":37557,"text":"Louisiana State University, Baton Rouge LA","active":true,"usgs":false}],"preferred":false,"id":870588,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Hunter, Rachael","contributorId":304470,"corporation":false,"usgs":false,"family":"Hunter","given":"Rachael","email":"","affiliations":[{"id":66082,"text":"Comite Resources Inc","active":true,"usgs":false}],"preferred":false,"id":870589,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Norman, Charles","contributorId":304471,"corporation":false,"usgs":false,"family":"Norman","given":"Charles","email":"","affiliations":[{"id":66083,"text":"Charles Norman & Associates","active":true,"usgs":false}],"preferred":false,"id":870590,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Kemp, G. Paul","contributorId":304472,"corporation":false,"usgs":false,"family":"Kemp","given":"G. Paul","affiliations":[{"id":66084,"text":"Dept. of Oceanography and Coastal Sciences, Louisiana State University","active":true,"usgs":false}],"preferred":false,"id":870591,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"White, John R.","contributorId":304473,"corporation":false,"usgs":false,"family":"White","given":"John","email":"","middleInitial":"R.","affiliations":[{"id":66084,"text":"Dept. of Oceanography and Coastal Sciences, Louisiana State University","active":true,"usgs":false}],"preferred":false,"id":870592,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Meselhe, Ehab","contributorId":95333,"corporation":false,"usgs":true,"family":"Meselhe","given":"Ehab","email":"","affiliations":[],"preferred":false,"id":870609,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}}
,{"id":70243088,"text":"70243088 - 2023 - Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates","interactions":[],"lastModifiedDate":"2023-05-12T15:01:48.456141","indexId":"70243088","displayToPublicDate":"2023-04-25T06:55:33","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1836,"text":"Global Biogeochemical Cycles","active":true,"publicationSubtype":{"id":10}},"title":"Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates","docAbstract":"<p>Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO<sub>2</sub>), methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) to the atmosphere. In the framework of the 2<sup>nd</sup><span>&nbsp;</span>phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we synthesize existing estimates of GHG emissions from streams, rivers, lakes and reservoirs, and homogenize them with regard to underlying global maps of water surface area distribution and the effects of seasonal ice cover. We then produce regionalized estimates of GHG emissions over 10 extensive land regions. According to our synthesis, inland water GHG emissions have a global warming potential of an equivalent emission of 13.5 (9.9-20.1) and 8.3 (5.7-12.7) Pg CO<sub>2</sub>-eq. yr<sup>-1</sup><span>&nbsp;</span>at a 20 and 100 year horizon (GWP<sub>20</sub><span>&nbsp;</span>and GWP<sub>100</sub>), respectively. Contributions of CO<sub>2</sub><span>&nbsp;</span>dominate GWP<sub>100</sub>, with rivers being the largest emitter. For GWP<sub>20</sub>, lakes and rivers are equally important emitters, and the warming potential of CH<sub>4</sub><span>&nbsp;</span>is more important than that of CO<sub>2</sub>. Contributions from N<sub>2</sub>O are about two orders of magnitude lower. Normalized to the area of RECCAP-2 regions, S-America and SE-Asia show the highest emission rates, dominated by riverine CO<sub>2</sub><span>&nbsp;</span>emissions.</p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2022GB007658","usgsCitation":"Lauerwald, R., Allen, G., Deemer, B., Liu, S., Maavara, T., Raymond, P., Alcott, L., Bastviken, D., Hastie, A., Holgerson, M.A., Johnson, M.S., Lehner, B., Lin, P., Marzadri, A., Ran, L., Tian, H., Yang, X., Yao, Y., and Regnier, P., 2023, Inland water greenhouse gas budgets for RECCAP2: 2. 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Integrating approaches from decision analysis, expert judgment, and model aggregation, we convened multiple modeling teams to evaluate COVID-19 reopening strategies for a mid-sized United States county early in the pandemic. Projections from seventeen distinct models were inconsistent in magnitude but highly consistent in ranking interventions. The 6-mo-ahead aggregate projections were well in line with observed outbreaks in mid-sized US counties. The aggregate results showed that up to half the population could be infected with full workplace reopening, while workplace restrictions reduced median cumulative infections by 82%. Rankings of interventions were consistent across public health objectives, but there was a strong trade-off between public health outcomes and duration of workplace closures, and no win-win intermediate reopening strategies were identified. Between-model variation was high; the aggregate results thus provide valuable risk quantification for decision making. This approach can be applied to the evaluation of management interventions in any setting where models are used to inform decision making. This case study demonstrated the utility of our approach and was one of several multimodel efforts that laid the groundwork for the COVID-19 Scenario Modeling Hub, which has provided multiple rounds of real-time scenario projections for situational awareness and decision making to the Centers for Disease Control and Prevention since December 2020.</span></p>","language":"English","publisher":"National Academy of Sciences","doi":"10.1073/pnas.2207537120","usgsCitation":"Shea, K., Borchering, R.K., Probert, W., Howerton, E., Bogich, T.L., Li, S., van Panhuis, W., Viboud, C., Aguas, R., Belov, A.A., Bhargava, S.H., Cavany, S.M., Chang, J.C., Chen, C., Chen, J., Chen, S., Chen, Y., Childs, L.M., Chow, C.C., Crooker, I., Del Valle, S.Y., Espana, G., Fairchild, G., Gerkin, R.C., Germann, T.C., Gu, Q., Guan, X., Guo, L., Hart, G.R., Hladish, T.J., Hupert, N., Janies, D., Kerr, C.C., Klein, D.J., Klein, E.Y., Lin, G., Manore, C., Meyers, L.A., Mittler, J.E., Mu, K., Nunez, R.C., Oidtman, R.J., 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,{"id":70243084,"text":"70243084 - 2023 - Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments","interactions":[],"lastModifiedDate":"2023-05-12T14:58:57.836772","indexId":"70243084","displayToPublicDate":"2023-04-25T06:44:39","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1836,"text":"Global Biogeochemical Cycles","active":true,"publicationSubtype":{"id":10}},"title":"Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments","docAbstract":"<p>Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO<sub>2</sub>), methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) to the atmosphere. In the framework of the 2<sup>nd</sup><span>&nbsp;</span>phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we review the state of the art in estimating inland water GHG budgets at global scale, which has substantially advanced since the first phase of RECCAP nearly ten years ago. The development of increasingly sophisticated upscaling techniques, including statistical prediction and process based models, allows for spatially explicit estimates which are needed for regionalized assessments of continental GHG budgets such as those established for RECCAP. A few recent estimates also resolve the seasonal and/or interannual variability in inland water GHG emissions. Nonetheless, the global-scale assessment of inland water emissions remains challenging because of limited spatial and temporal coverage of observations and persisting uncertainties in the abundance and distribution of inland water surface areas. To decrease these uncertainties, more empirical work on the contributions of hot-spots and hot-moments to overall inland water GHG emissions is particularly needed.</p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2022GB007657","usgsCitation":"Lauerwald, R., Allen, G., Deemer, B., Liu, S., Maavara, T., Raymond, P., Alcott, L., Bastviken, D., Hastie, A., Holgerson, M.A., Johnson, M.S., Lehner, B., Lin, P., Marzadri, A., Ran, L., Tian, H., Yang, X., Yao, Y., and Regnier, P., 2023, Inland water greenhouse gas budgets for RECCAP2: 1. 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,{"id":70243014,"text":"70243014 - 2023 - Groundwater prospecting using a multi-technique framework in the lower Casas Grandes Basin, Chihuahua, México","interactions":[],"lastModifiedDate":"2023-04-26T11:41:20.570086","indexId":"70243014","displayToPublicDate":"2023-04-25T06:33:26","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3709,"text":"Water","active":true,"publicationSubtype":{"id":10}},"title":"Groundwater prospecting using a multi-technique framework in the lower Casas Grandes Basin, Chihuahua, México","docAbstract":"<div class=\"html-p\">Groundwater is a strategic resource for economic development, social justice, environmental sustainability, and water governance. The lower Casas Grandes River Basin, located in the state of Chihuahua, México, is in a semi-arid region with increasing groundwater demand and regional challenges such as drought and depletion of aquifers. Even though there is official information about the availability of groundwater, a comprehensive aquifer characterization requiring an interdisciplinary investigation using a diverse suite of tools and multiple data sources has yet to be carried out. This study presents a multi-technique framework to evaluate potential sites to drill for groundwater resources and reduce the risk of unsuccessful drilling. The main components of the methodology include wellhead leveling correction with a differential global positioning survey to define piezometric levels, principal component analysis using LANDSAT-8 images, application of geospatial tools, geophysics analysis using time domain electromagnetic surveys (TDES) and vertical electric soundings (VES), and structural geohydrology to define aquifer characteristics. The results showed that using the proposed framework steps improved the possibility of identifying subsurface layers with lower resistivity values that could be related to groundwater. Low resistivity values (35 Ohm-m) were found at depths from 50 to 85 m at sites where the regional static water level reached a depth of 245 m, indicating the potential location of a shallow groundwater resource at a site where the intersection of a fracture trace was identified. 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Juarez","active":true,"usgs":false}],"preferred":false,"id":870573,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Alatorre-Cejudo, Luis C.","contributorId":304462,"corporation":false,"usgs":false,"family":"Alatorre-Cejudo","given":"Luis","email":"","middleInitial":"C.","affiliations":[{"id":66075,"text":"Autonomous University of Ciudad Juarez","active":true,"usgs":false}],"preferred":false,"id":870574,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Samimi, Maryam","contributorId":304463,"corporation":false,"usgs":false,"family":"Samimi","given":"Maryam","email":"","affiliations":[{"id":12628,"text":"New Mexico State University","active":true,"usgs":false}],"preferred":false,"id":870575,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Vazquez-Galvez, Felipe A.","contributorId":304464,"corporation":false,"usgs":false,"family":"Vazquez-Galvez","given":"Felipe","email":"","middleInitial":"A.","affiliations":[{"id":66075,"text":"Autonomous University of Ciudad Juarez","active":true,"usgs":false}],"preferred":false,"id":870576,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Pinales-Munguia, Adan","contributorId":304465,"corporation":false,"usgs":false,"family":"Pinales-Munguia","given":"Adan","email":"","affiliations":[{"id":66081,"text":"Autonomous University of Chihuahua","active":true,"usgs":false}],"preferred":false,"id":870577,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Ibanez-Hernandez, Oscar F.","contributorId":304466,"corporation":false,"usgs":false,"family":"Ibanez-Hernandez","given":"Oscar","email":"","middleInitial":"F.","affiliations":[{"id":66075,"text":"Autonomous University of Ciudad Juarez","active":true,"usgs":false}],"preferred":false,"id":870578,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Heyman, Josiah M.","contributorId":304467,"corporation":false,"usgs":false,"family":"Heyman","given":"Josiah","email":"","middleInitial":"M.","affiliations":[{"id":64863,"text":"University of Texas at El Paso","active":true,"usgs":false}],"preferred":false,"id":870579,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Mayer, Alex","contributorId":304468,"corporation":false,"usgs":false,"family":"Mayer","given":"Alex","affiliations":[{"id":64863,"text":"University of Texas at El Paso","active":true,"usgs":false}],"preferred":false,"id":870580,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Hargrove, William L.","contributorId":304469,"corporation":false,"usgs":false,"family":"Hargrove","given":"William","email":"","middleInitial":"L.","affiliations":[{"id":64863,"text":"University of Texas at El Paso","active":true,"usgs":false}],"preferred":false,"id":870581,"contributorType":{"id":1,"text":"Authors"},"rank":19}]}}
,{"id":70242907,"text":"ofr20231017 - 2023 - Near-field receiving-water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California—2020","interactions":[],"lastModifiedDate":"2026-02-11T20:47:08.566968","indexId":"ofr20231017","displayToPublicDate":"2023-04-24T13:31:08","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2023-1017","displayTitle":"Near-Field Receiving-Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California—2020","title":"Near-field receiving-water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California—2020","docAbstract":"<p>Trace-metal concentrations in sediment and in the clam <i>Limecola petalum</i> (World Register of Marine Species, 2020; formerly reported as <i>Macoma balthica</i> and <i>M. petalum</i>), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer (km) south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in south San Francisco Bay, California. This report includes the data collected by the U.S. Geological Survey (USGS) for January 2020–December 2020 (Cain and others, 2022). These data append to long-term datasets extending back to 1974. A major focus of the report is an integrated description of the 2020 data within the context of the longer, multidecadal dataset. This dataset supports the City of Palo Alto’s Near-Field Receiving- Water Monitoring Program, initiated in 1994.</p><p>Silver and copper contamination substantially decreased at the site in the 1980s following the implementation by PARWQCP of advanced wastewater-treatment and source-control measures. Since the 1990s, concentrations of these elements in surface sediments have continued to decrease, although more slowly. For example, from 1994 to 2020, the minimum annual mean silver concentration—0.20 milligram per kilogram (mg/kg)—was observed in multiple years. In 2020, silver concentrations ranged from 0.18 to 0.28 mg/kg. These concentrations are 2 to 3 times higher than the regional background concentration. Presently (2020), sediment-copper concentrations appear to be near the regional background level. Over the same period (1994–2020), sedimentary iron and zinc exhibited modest decreases. Sedimentary aluminum, chromium, mercury, nickel, and selenium have not exhibited any trend. Since 1994, silver and copper concentrations in <i>L. petalum</i> have varied seasonally, apparently in response to a combination of site-specific metal exposures and cyclic growth and reproduction, as reported previously. Seasonal patterns for other elements, including chromium, mercury, nickel, selenium, and zinc, generally were similar in timing and magnitude as those for silver and copper. Downward trends in the silver and zinc concentrations in <i>L. petalum</i> during 1994–2020 were evident and appeared to be related to the general physiological condition of the clam, indicated by a condition index.</p><p>Biological effects of elevated silver and copper contamination at the Palo Alto site have been interpreted from data collected during and after the recession of these contaminants. Concentrations of both elements in the soft tissues of <i>L. petalum</i> decreased with sedimentary copper and silver. This pattern was associated with changes in the reproductive activity of <i>L. petalum</i>, as well as the structure of the benthic invertebrate community. Reproductive activity of <i>L. petalum</i> increased as metal concentrations in <i>L. petalum</i> decreased (Hornberger and others, 2000), and presently is stable with almost all animals initiating reproduction in the fall and spawning the following spring. Analyses of the benthic community structure indicate that the infaunal invertebrate community has shifted from one dominated by several opportunistic species when silver and copper exposures were highest to one in which the species abundance is more evenly distributed, a pattern that indicates a more stable community that is subjected to fewer stressors. Importantly, this long-term change is unrelated to other metals and other measured environmental factors, including salinity and sediment composition. In addition, two of the opportunistic species (<i>Ampelisca abdita</i> and <i>Streblospio benedicti</i>) that brood their young and live on the surface of the sediment in tubes have shown a continual decrease in dominance coincident with the decrease in metals. Both species had short-lived rebounds in abundance in 2008, 2009, and 2010 and showed signs of increasing abundance in 2020. <i>Heteromastus filiformis</i> (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance and, in the last several years before 2008, showed a stable population. <i>H. filiformis</i> abundance increased slightly from 2011 to 2012 and returned to pre-2011 numbers in 2020.</p><p>The reproductive mode of most species that were present in 2020 was indicative of species that were capable of movement either as pelagic larvae or as mobile adults. Although oviparous species were lower in number in this group, the authors hypothesize that these species will return slowly as more species move back into the area. The use of functional ecology was highlighted in the 2020 benthic community data, which showed that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today, community data show a mix of species that consume the sediment, or filter feed, those that have pelagic larvae that must survive landing on the sediment, and those that brood their young. The long-term recovery observed after the 1970s can be ascribed to the decrease in sediment pollutants.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20231017","collaboration":"Prepared in cooperation with the City of Palo Alto, California","usgsCitation":"Cain, D.J., Croteau, M.-N., Thompson, J.K., Parchaso, F., Stewart, R., Zierdt Smith, E.L., Shrader, K.H., Kieu, L.H., and Luoma, S.N., 2023, Near-field receiving-water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California—2020: U.S. Geological Survey Open-File Report 2023–1017, 51 p., https://doi.org/10.3133/ofr20231017.","productDescription":"Report: ix, 51 p.; Data Release","numberOfPages":"51","onlineOnly":"Y","ipdsId":"IP-133169","costCenters":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"links":[{"id":416134,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2023/1017/covrthb.jpg"},{"id":416135,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2023/1017/ofr20231017.pdf","text":"Report","size":"3 MB","linkFileType":{"id":1,"text":"pdf"}},{"id":416139,"rank":6,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/ofr20181107","text":"Open-File Report 2018-1107","linkHelpText":"- Near-field receiving-water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California—2017"},{"id":416136,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9IBQ23S","text":"Data for monitoring trace metal and benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California (ver 2.0, November 2022)","description":"Cain, D.J., Croteau, M., Parchaso, F., Stewart, R., Zierdt Smith, E.L., Thompson, J.K., Kieu, L., Turner, M., and Baesman, S.M., 2022, Data for monitoring trace metal and benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California (ver 2.0, November 2022): U.S. Geological Survey data release, https://doi.org/10.5066/P9IBQ23S."},{"id":416140,"rank":5,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/ofr20171135","text":"Open-File Report 2017-1135","linkHelpText":"- Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California; 2016"},{"id":499767,"rank":9,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_114697.htm","linkFileType":{"id":5,"text":"html"}},{"id":416137,"rank":8,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/ofr20211079","text":"Open-File Report 2021-1079","linkHelpText":"- Near-Field Receiving-Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California—2019"},{"id":416138,"rank":7,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/ofr20191084","text":"Open-File Report 2019-1084","linkHelpText":"- Near-Field Receiving-Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California—2018"},{"id":416141,"rank":4,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/ofr20161118","text":"Open-File Report 2016-1118","linkHelpText":"- Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in south San Francisco Bay, California; 2015"}],"country":"United States","state":"California","otherGeospatial":"South San Francisco Bay","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -122.26067527634044,\n              37.52598582053362\n            ],\n            [\n              -122.26067527634044,\n              37.38564942805466\n            ],\n            [\n              -121.8210169399245,\n              37.38564942805466\n            ],\n            [\n              -121.8210169399245,\n              37.52598582053362\n            ],\n            [\n              -122.26067527634044,\n              37.52598582053362\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"https://www.usgs.gov/centers/gmeg/connect\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/gmeg/connect\">Contact Information</a>,<br><a href=\"https://www.usgs.gov/centers/gmeg\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/gmeg\">Geology, Minerals, Energy, &amp; Geophysics Science Center</a><br><a href=\"https://www.usgs.gov/centers/gmeg\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/gmeg\">Menlo Park, California</a><br><a href=\"https://usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://usgs.gov/\">U.S. Geological Survey</a><br>Building 19, 350 N. Akron Rd.<br>P.O. Box 158<br>Moffett Field, CA 94035</p>","tableOfContents":"<ul><li>Acknowledgments <br></li><li>Executive Summary of Past Findings <br></li><li>Abstract <br></li><li>Introduction <br></li><li>Methods <br></li><li>Results <br></li><li>Summary <br></li><li>References Cited <br></li><li>Appendix 1. Certified Concentrations and Recovery Percentages of Inorganic Elements in National Institute of Science and Technology Standard Reference Materials 2709a and 2711a, Prepared in 2020 <br></li><li>Appendix 2. Certified Concentrations and Recovery Percentages of Inorganic Elements in National Research Council Canada Certified Reference Material TORT-3 and National Institute of Science and Technology Standard Reference Material 1566b, Prepared in 2020 <br></li><li>Appendix 3. Mercury and Selenium Concentrations Determined in Sample Splits of Surface Sediments and Clam <em>Limecola petalum</em> Collected at Palo Alto Site, California, in 2020. <br></li><li>Appendix 4. Recovery Percentages (±Standard Deviation) of Mercury and Selenium in Standard Reference Materials, 2020 <br></li><li>Appendix 5. Method Detection Limits and Reporting Levels for Inductively Coupled Plasma Optical Emission Spectrophotometry Methods, in 2020 <br></li><li>Appendix 6. Statistical Summary of Silver and Copper Concentrations in Sediment and Clam <em>Limecola petalum</em> Collected at Palo Alto Site, California, in 2020 and in 1977–2020 <br></li><li>Appendix 7. Reproduction Data for Clam <em>Limecola petalum</em> Collected at Palo Alto Site, California, in 2015–2020 <br></li><li>Appendix 8. Complete List of Benthic Species Found at Palo Alto Site, California, in 2020 Appendix 9. Benthic Species Name Changes as of 2020</li></ul>","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"publishedDate":"2023-04-24","noUsgsAuthors":false,"publicationDate":"2023-04-24","publicationStatus":"PW","contributors":{"authors":[{"text":"Cain, Daniel J. 0000-0002-3443-0493 djcain@usgs.gov","orcid":"https://orcid.org/0000-0002-3443-0493","contributorId":1784,"corporation":false,"usgs":true,"family":"Cain","given":"Daniel","email":"djcain@usgs.gov","middleInitial":"J.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":870177,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Croteau, Marie Noele 0000-0003-0346-3580 mcroteau@usgs.gov","orcid":"https://orcid.org/0000-0003-0346-3580","contributorId":895,"corporation":false,"usgs":true,"family":"Croteau","given":"Marie","email":"mcroteau@usgs.gov","middleInitial":"Noele","affiliations":[{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":870178,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Thompson, Janet K. 0000-0002-1528-8452 jthompso@usgs.gov","orcid":"https://orcid.org/0000-0002-1528-8452","contributorId":1009,"corporation":false,"usgs":true,"family":"Thompson","given":"Janet","email":"jthompso@usgs.gov","middleInitial":"K.","affiliations":[{"id":36183,"text":"Hydro-Ecological Interactions Branch","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":870179,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Parchaso, Francis 0000-0002-9471-7787 parchaso@usgs.gov","orcid":"https://orcid.org/0000-0002-9471-7787","contributorId":173016,"corporation":false,"usgs":true,"family":"Parchaso","given":"Francis","email":"parchaso@usgs.gov","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":870180,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Stewart, A. Robin 0000-0003-2918-546X arstewar@usgs.gov","orcid":"https://orcid.org/0000-0003-2918-546X","contributorId":1482,"corporation":false,"usgs":true,"family":"Stewart","given":"A.","email":"arstewar@usgs.gov","middleInitial":"Robin","affiliations":[{"id":40553,"text":"WMA - Office of the Chief Operating Officer","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":36183,"text":"Hydro-Ecological Interactions Branch","active":true,"usgs":true}],"preferred":true,"id":870181,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Zierdt Smith, Emily L. 0000-0003-0787-1856 ezierdtsmith@usgs.gov","orcid":"https://orcid.org/0000-0003-0787-1856","contributorId":220320,"corporation":false,"usgs":true,"family":"Zierdt Smith","given":"Emily","email":"ezierdtsmith@usgs.gov","middleInitial":"L.","affiliations":[],"preferred":true,"id":870182,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Shrader, Kelly H. 0000-0001-6550-7425 kshrader@usgs.gov","orcid":"https://orcid.org/0000-0001-6550-7425","contributorId":220319,"corporation":false,"usgs":true,"family":"Shrader","given":"Kelly","email":"kshrader@usgs.gov","middleInitial":"H.","affiliations":[],"preferred":true,"id":870183,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Kieu, Le H. lkieu@usgs.gov","contributorId":206905,"corporation":false,"usgs":false,"family":"Kieu","given":"Le H.","email":"lkieu@usgs.gov","affiliations":[],"preferred":false,"id":870184,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Luoma, Samuel N. 0000-0001-5443-5091 snluoma@usgs.gov","orcid":"https://orcid.org/0000-0001-5443-5091","contributorId":2287,"corporation":false,"usgs":true,"family":"Luoma","given":"Samuel","email":"snluoma@usgs.gov","middleInitial":"N.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":870185,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70242909,"text":"dr1173 - 2023 - Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary","interactions":[],"lastModifiedDate":"2023-04-25T11:03:10.511956","indexId":"dr1173","displayToPublicDate":"2023-04-24T13:28:35","publicationYear":"2023","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":9318,"text":"Data Report","code":"DR","onlineIssn":"2771-9448","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1173","displayTitle":"Distribution and Abundance of Southwestern Willow Flycatchers (<i>Empidonax traillii extimus</i>) on the Upper San Luis Rey River, San Diego County, California—2022 Data Summary","title":"Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary","docAbstract":"<h1>Executive Summary</h1><p>We surveyed for Southwestern Willow Flycatchers (<i>Empidonax traillii extimus</i>; flycatcher) along the upper San Luis Rey River near Lake Henshaw in Santa Ysabel, California, in 2022. Surveys were completed at four locations: three downstream from Lake Henshaw, where surveys occurred from 2015 to 2021 (Rey River Ranch [RRR], Cleveland National Forest [CNF], Vista Irrigation District [VID]), and one at VID Lake Henshaw (VLH) that has been surveyed annually since 2018. There were 71 territorial flycatchers detected at 3 locations (RRR, CNF, VLH), and 6 transient flycatchers of unknown subspecies detected at VID and VLH. Downstream from Lake Henshaw, four territorial flycatchers, including two males and two females, were detected at RRR and CNF. In total, two territories were established consisting of two pairs at these locations. At VLH, we detected 67 territorial flycatchers, including 30 males, 34 females, and 3 flycatchers of unknown sex. In total, 40 territories were established, containing 35 pairs (24 monogamous pairings and 5 polygynous groups consisting of 4 males each pairing with 2 different females, and 1 male pairing with 3 different females), and 5 flycatchers of undetermined breeding status (3 males and 2 flycatchers of unknown sex). Brown-headed cowbirds (<i>Molothrus ater</i>; cowbird) were detected at all four survey locations.</p><p>Flycatchers used five habitat types in the survey area: (1) mixed willow riparian, (2) willow-cottonwood, (3) willow-oak, (4) willow-ash, and (5) oak-sycamore. Of the flycatcher locations, 83 percent were located in habitat characterized as mixed willow riparian, and 92 percent were in habitat with greater than 95-percent native plant cover. Exotic vegetation was not prevalent in the survey area.</p><p>There were 22 nests incidentally located during surveys: 5 were successful, 1 was seen with eggs on the last visit, 10 failed, and the outcome of the remaining 6 nests was unknown. Three of these nests were parasitized by cowbirds. There were 13 juveniles detected at VLH; no juveniles were detected at RRR or CNF.<br></p><p>Five banded flycatchers were detected during surveys, three of which were confirmed to be adults that held territories in previous years. In addition, two flycatchers with a single dark blue federal band, indicating that they were banded as nestlings in a previous demographic study downstream from Lake Henshaw (Howell and others, 2022), were resighted during surveys.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/dr1173","programNote":"Ecosystems Mission Area—Species Management Research Program","usgsCitation":"Howell, S.L., and Kus, B.E., 2023, Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary: U.S. Geological Survey Data Report 1173, 12 p., https://doi.org/10.3133/dr1173.","productDescription":"Report: vi, 12 p.; Data Release","numberOfPages":"12","onlineOnly":"Y","ipdsId":"IP-147974","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":416147,"rank":6,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/dr1173/full"},{"id":416146,"rank":5,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/dr/1173/images"},{"id":416145,"rank":4,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/dr/1173/dr1173.xml"},{"id":416144,"rank":3,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/dr/1173/covrthb.jpg"},{"id":416143,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/dr/1173/dr1173.pdf","text":"Report","size":"4 MB","linkFileType":{"id":1,"text":"pdf"}},{"id":416142,"rank":1,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P96VC5Y4","text":"Southwestern Willow Flycatcher (<i>Empidonax traillii extimus</i>) surveys and nest monitoring in San Diego County, California","description":"Howell, S.L., and Kus, B.E., 2022, Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys and nest monitoring in San Diego County, California: U.S. Geological Survey data release, https://doi.org/ 10.5066/ P96VC5Y4."}],"country":"United States","state":"California","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -116.55,\n              33.21\n            ],\n            [\n              -116.55,\n              33.07\n            ],\n            [\n              -116.41,\n              33.07\n            ],\n            [\n              -116.41,\n              33.21\n            ],\n            [\n              -116.55,\n              33.21\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"https://www.usgs.gov/centers/werc\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/werc\">Western Ecological Research Center</a><br><a href=\"https://usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://usgs.gov\">U.S. Geological Survey</a><br>3020 State University Drive East<br>Sacramento, California 95819</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Executive Summary</li><li>Introduction</li><li>Methods</li><li>Results</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2023-04-24","noUsgsAuthors":false,"publicationDate":"2023-04-24","publicationStatus":"PW","contributors":{"authors":[{"text":"Howell, Scarlett L. 0000-0001-7538-4860 showell@usgs.gov","orcid":"https://orcid.org/0000-0001-7538-4860","contributorId":140441,"corporation":false,"usgs":true,"family":"Howell","given":"Scarlett","email":"showell@usgs.gov","middleInitial":"L.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":870186,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kus, Barbara E. 0000-0002-3679-3044 barbara_kus@usgs.gov","orcid":"https://orcid.org/0000-0002-3679-3044","contributorId":3026,"corporation":false,"usgs":true,"family":"Kus","given":"Barbara E.","email":"barbara_kus@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":870187,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70247292,"text":"70247292 - 2023 - Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death","interactions":[],"lastModifiedDate":"2023-07-26T13:32:06.191476","indexId":"70247292","displayToPublicDate":"2023-04-24T08:27:24","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":16665,"text":"Forest Pathology","active":true,"publicationSubtype":{"id":10}},"title":"Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death","docAbstract":"<p><span>The ecologically and culturally vital tree species, ʻōhiʻa lehua (</span><i>Metrosideros polymorpha</i><span>), is threatened by the fungal pathogens&nbsp;</span><i>Ceratocystis lukuohia</i><span>&nbsp;and&nbsp;</span><i>Ceratocystis huliohia</i><span>, the causal agents of the disease complex called Rapid ʻŌhiʻa Death (ROD). Four invasive ambrosia beetle (Coleoptera: Curculionidae: Scolytinae) species in the Xyleborini tribe colonize ROD&nbsp;</span><i>Ceratocystis</i><span>-infested ‘ōhiʻa and produce inoculum through their frass; however, the potential for direct transmission of the ROD fungi by these beetles was unknown. We fulfilled Leach's rules to support insect transmission of ROD by documenting the visitation of these ambrosia beetles to healthy ‘ōhiʻa trees, culturing&nbsp;</span><i>C. lukuohia</i><span>&nbsp;and&nbsp;</span><i>C. huliohia</i><span>&nbsp;from the ROD-associated beetles using three different collection methods at multiple study sites, and challenging healthy ʻōhiʻa seedlings with beetles that were exposed to both&nbsp;</span><i>C. lukuohia</i><span>&nbsp;and&nbsp;</span><i>C. huliohia</i><span>&nbsp;cultures. We documented all four invasive ROD-associated ambrosia beetle species including&nbsp;</span><i>Xyleborinus saxesenii</i><span>,&nbsp;</span><i>Xyleborus affinis</i><span>,&nbsp;</span><i>Xyleborus ferrugineus</i><span>, and&nbsp;</span><i>Xyleborus perforans</i><span>&nbsp;to regularly visit healthy ʻōhiʻa trees on sticky traps. Viable&nbsp;</span><i>Ceratocystis</i><span>&nbsp;propagules were isolated from all species, and&nbsp;</span><i>C. lukuohia</i><span>&nbsp;was most commonly isolated of the two ROD-causing fungi. Consistently across all collection techniques, ROD&nbsp;</span><i>Ceratocystis</i><span>&nbsp;spp. were detected on just under 3% of all assayed beetles, with the highest detection rate from&nbsp;</span><i>X. affinis</i><span>. All four beetle species were capable of directly transmitting both pathogens to healthy ʻōhiʻa seedlings with a high rate of transfer.&nbsp;</span><i>Ceratocystis</i><span>&nbsp;spp. are highly virulent pathogens in trees, and a single inoculation can result in tree death, therefore any direct transmission is a cause for concern. After meeting the criteria of Leach's rules, we propose that&nbsp;</span><i>Xi. saxesenii</i><span>,&nbsp;</span><i>X. affinis</i><span>,&nbsp;</span><i>X. ferrugineus</i><span>, and&nbsp;</span><i>X. perforans</i><span>&nbsp;are vectors of&nbsp;</span><i>C. lukuohia</i><span>&nbsp;and&nbsp;</span><i>C. huliohia</i><span>, particularly in areas of high ROD pressure and tree stress.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/efp.12812","usgsCitation":"Roy, K., Jaenecke, K., Dunkle, E., Mikros, D., and Peck, R., 2023, Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death: Forest Pathology, v. 53, no. 3, e12812, 11 p., https://doi.org/10.1111/efp.12812.","productDescription":"e12812, 11 p.","ipdsId":"IP-145289","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":443755,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/efp.12812","text":"Publisher Index Page"},{"id":435360,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P99TXGKI","text":"USGS data release","linkHelpText":"Hawaiʻi Ambrosia Beetle Direct ROD Transmission 2018-2022 (ver. 2.0, April 2023)"},{"id":419344,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Hawaii","otherGeospatial":"Waiākea Forest Reserve, Hawai'i Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -155.2042510429986,\n              19.668151060180463\n            ],\n            [\n              -155.2042510429986,\n              19.58628926243462\n            ],\n            [\n              -155.07169530880805,\n              19.58628926243462\n            ],\n            [\n              -155.07169530880805,\n              19.668151060180463\n            ],\n            [\n              -155.2042510429986,\n              19.668151060180463\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"53","issue":"3","noUsgsAuthors":false,"publicationDate":"2023-04-24","publicationStatus":"PW","contributors":{"authors":[{"text":"Roy, Kylle 0000-0002-7993-9031","orcid":"https://orcid.org/0000-0002-7993-9031","contributorId":213271,"corporation":false,"usgs":true,"family":"Roy","given":"Kylle","email":"","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"preferred":true,"id":879137,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Jaenecke, Kelly 0000-0002-7124-4788","orcid":"https://orcid.org/0000-0002-7124-4788","contributorId":211063,"corporation":false,"usgs":false,"family":"Jaenecke","given":"Kelly","email":"","affiliations":[{"id":13341,"text":"Hawai‘i Cooperative Studies Unit, University of Hawai‘i at Hilo","active":true,"usgs":false}],"preferred":false,"id":879138,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dunkle, Ellen 0000-0002-7081-0717","orcid":"https://orcid.org/0000-0002-7081-0717","contributorId":244898,"corporation":false,"usgs":false,"family":"Dunkle","given":"Ellen","email":"","affiliations":[{"id":13341,"text":"Hawai‘i Cooperative Studies Unit, University of Hawai‘i at Hilo","active":true,"usgs":false}],"preferred":false,"id":879139,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Mikros, Dan","contributorId":238975,"corporation":false,"usgs":false,"family":"Mikros","given":"Dan","email":"","affiliations":[{"id":13341,"text":"Hawai‘i Cooperative Studies Unit, University of Hawai‘i at Hilo","active":true,"usgs":false}],"preferred":false,"id":879140,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Peck, Robert W. 0000-0002-8739-9493","orcid":"https://orcid.org/0000-0002-8739-9493","contributorId":193088,"corporation":false,"usgs":false,"family":"Peck","given":"Robert W.","affiliations":[],"preferred":false,"id":879141,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70243122,"text":"70243122 - 2023 - A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)","interactions":[],"lastModifiedDate":"2023-07-11T15:58:46.447837","indexId":"70243122","displayToPublicDate":"2023-04-24T06:55:01","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2776,"text":"Molecular Ecology Resources","active":true,"publicationSubtype":{"id":10}},"title":"A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)","docAbstract":"<div class=\"abstract-group \"><div class=\"article-section__content en main\"><p>The proliferation of genomic sequencing approaches has significantly impacted the field of phylogenetics. Target capture approaches provide a cost-effective, fast and easily applied strategy for phylogenetic inference of non-model organisms. However, several existing target capture processing pipelines are incapable of incorporating whole genome sequencing (WGS). Here, we develop a new pipeline for capture and<span>&nbsp;</span><i>de novo</i><span>&nbsp;</span>assembly of the targeted regions using whole genome re-sequencing reads. This new pipeline captured targeted loci accurately, and given its unbiased nature, can be used with any target capture probe set. Moreover, due to its low computational demand, this new pipeline may be ideal for users with limited resources and when high-coverage sequencing outputs are required. We demonstrate the utility of our approach by incorporating WGS data into the first comprehensive phylogenomic reconstruction of the freshwater mussel family Margaritiferidae. We also provide a catalogue of well-curated functional annotations of these previously uncharacterized freshwater mussel-specific target regions, representing a complementary tool for scrutinizing phylogenetic inferences while expanding future applications of the probe set.</p></div></div>","language":"English","publisher":"Wiley","doi":"10.1111/1755-0998.13802","usgsCitation":"Gomes-dos-Santos, A., Froufe, E., Pfeiffer, J., Johnson, N., Smith, C.H., Machado, A.M., Castro, L.F., Do, V.T., Hattori, A., Garrison, N., Whelan, N., Bolotov, I.N., Vikhrev, I.V., Kondakov, A.V., Ghamizi, M., Prie, V., Bogan, A.E., and Lopes Lima, M., 2023, A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida): Molecular Ecology Resources, v. 23, no. 6, p. 1403-1422, https://doi.org/10.1111/1755-0998.13802.","productDescription":"20 p.","startPage":"1403","endPage":"1422","ipdsId":"IP-146793","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":443758,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/1755-0998.13802","text":"Publisher Index Page"},{"id":416544,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"23","issue":"6","noUsgsAuthors":false,"publicationDate":"2023-04-24","publicationStatus":"PW","contributors":{"authors":[{"text":"Gomes-dos-Santos, André","contributorId":304609,"corporation":false,"usgs":false,"family":"Gomes-dos-Santos","given":"André","affiliations":[{"id":66130,"text":"CIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal","active":true,"usgs":false}],"preferred":false,"id":871146,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Froufe, Elsa","contributorId":213253,"corporation":false,"usgs":false,"family":"Froufe","given":"Elsa","email":"","affiliations":[],"preferred":false,"id":871147,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Pfeiffer, John M.","contributorId":202521,"corporation":false,"usgs":false,"family":"Pfeiffer","given":"John M.","affiliations":[{"id":36469,"text":"Florida Museum of Natural History","active":true,"usgs":false}],"preferred":false,"id":871148,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Johnson, Nathan 0000-0001-5167-1988","orcid":"https://orcid.org/0000-0001-5167-1988","contributorId":210319,"corporation":false,"usgs":true,"family":"Johnson","given":"Nathan","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":871149,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Smith, Chase H. 0000-0002-1499-0311","orcid":"https://orcid.org/0000-0002-1499-0311","contributorId":225140,"corporation":false,"usgs":false,"family":"Smith","given":"Chase","email":"","middleInitial":"H.","affiliations":[{"id":13716,"text":"Baylor University","active":true,"usgs":false}],"preferred":false,"id":871150,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Machado, Andre M.","contributorId":304610,"corporation":false,"usgs":false,"family":"Machado","given":"Andre","email":"","middleInitial":"M.","affiliations":[{"id":66132,"text":"CIIMAR/CIMAR–Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal","active":true,"usgs":false}],"preferred":false,"id":871151,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Castro, L. Filipe C.","contributorId":304611,"corporation":false,"usgs":false,"family":"Castro","given":"L.","email":"","middleInitial":"Filipe C.","affiliations":[{"id":66130,"text":"CIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal","active":true,"usgs":false}],"preferred":false,"id":871152,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Do, Van Tu","contributorId":304612,"corporation":false,"usgs":false,"family":"Do","given":"Van","email":"","middleInitial":"Tu","affiliations":[{"id":66133,"text":"Vietnam Academy of Science and Technology","active":true,"usgs":false}],"preferred":false,"id":871153,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Hattori, Akimasa","contributorId":304613,"corporation":false,"usgs":false,"family":"Hattori","given":"Akimasa","email":"","affiliations":[{"id":66134,"text":"Matsuyama High School","active":true,"usgs":false}],"preferred":false,"id":871154,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Garrison, Nicole","contributorId":304614,"corporation":false,"usgs":false,"family":"Garrison","given":"Nicole","email":"","affiliations":[{"id":13360,"text":"Auburn University","active":true,"usgs":false}],"preferred":false,"id":871155,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Whelan, Nathan V.","contributorId":304024,"corporation":false,"usgs":false,"family":"Whelan","given":"Nathan V.","affiliations":[{"id":36188,"text":"U.S. Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":871156,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Bolotov, Ivan N.","contributorId":304615,"corporation":false,"usgs":false,"family":"Bolotov","given":"Ivan","email":"","middleInitial":"N.","affiliations":[{"id":49898,"text":"Russian Academy of Sciences","active":true,"usgs":false}],"preferred":false,"id":871157,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Vikhrev, Ilya V.","contributorId":304616,"corporation":false,"usgs":false,"family":"Vikhrev","given":"Ilya","email":"","middleInitial":"V.","affiliations":[{"id":49898,"text":"Russian Academy of Sciences","active":true,"usgs":false}],"preferred":false,"id":871158,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Kondakov, Alexander V.","contributorId":304617,"corporation":false,"usgs":false,"family":"Kondakov","given":"Alexander","email":"","middleInitial":"V.","affiliations":[{"id":49898,"text":"Russian Academy of Sciences","active":true,"usgs":false}],"preferred":false,"id":871159,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Ghamizi, Mohamed","contributorId":304618,"corporation":false,"usgs":false,"family":"Ghamizi","given":"Mohamed","email":"","affiliations":[{"id":66135,"text":"University of Cadi Ayyad","active":true,"usgs":false}],"preferred":false,"id":871160,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Prie, Vincent","contributorId":213294,"corporation":false,"usgs":false,"family":"Prie","given":"Vincent","email":"","affiliations":[],"preferred":false,"id":871161,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Bogan, Arthur E.","contributorId":198854,"corporation":false,"usgs":false,"family":"Bogan","given":"Arthur","email":"","middleInitial":"E.","affiliations":[{"id":35349,"text":"North Carolina State Museum of Natural Sciences","active":true,"usgs":false}],"preferred":false,"id":871162,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Lopes Lima, Manuel","contributorId":304619,"corporation":false,"usgs":false,"family":"Lopes Lima","given":"Manuel","email":"","affiliations":[{"id":66130,"text":"CIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal","active":true,"usgs":false}],"preferred":false,"id":871163,"contributorType":{"id":1,"text":"Authors"},"rank":18}]}}
,{"id":70244258,"text":"70244258 - 2023 - Strength recovery in quartzite is controlled by changes in friction in experiments at hydrothermal conditions up to 200°C","interactions":[],"lastModifiedDate":"2023-06-09T11:51:23.230384","indexId":"70244258","displayToPublicDate":"2023-04-24T06:49:51","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":7514,"text":"Journal of Geophysical Research - Solid Earth","active":true,"publicationSubtype":{"id":10}},"title":"Strength recovery in quartzite is controlled by changes in friction in experiments at hydrothermal conditions up to 200°C","docAbstract":"<div class=\"article-section__content en main\"><p>The rate of fault zone restrengthening between earthquakes can be influenced by both frictional and cohesive healing processes. Friction is dependent on effective normal stress while cohesion is independent of normal stress, potentially explaining—in part—the lack of depth dependence of earthquake stress drops. Although amenable to laboratory testing, few studies have systematically addressed the normal stress dependence of restrengthening rate. This is partially due to difficulty in separating relative contributions of friction and cohesion in recovery of fault strength. We present results from a series of slide-hold-slide tests on thin layers (≤10&nbsp;\uD835\uDF07m) of ultrafine quartz gouge that develop during shearing of initially bare-surface quartzite. Tests were conducted at 10&nbsp;MPa constant pore pressure, 20–200&nbsp;MPa constant effective normal stress, and temperatures of 22°–200°C. Restrengthening, defined as the difference between peak shear stress measured after resumption of sliding and steady-state sliding shear stress, increases with the log of hold duration. The 200°C healing rate, 0.014 per e-fold increase in time, is comparable to that determined from seismological observations along the Calaveras Fault, California. Construction of Mohr-Coulomb failure envelopes shows that changes in cohesion are small (&lt;1&nbsp;MPa) and independent of hold durations to 10<sup>5</sup><span>&nbsp;</span>s, indicating that the increased strength is due to changes in the friction coefficient. These experimental results are inconsistent with the hypothesis that cohesive healing explains the depth independence of earthquake stress drop, but higher temperatures, longer time-scales, and more complex mineralogy could facilitate cohesive healing in natural fault systems.</p></div>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2022JB025663","usgsCitation":"Jeppson, T.N., Lockner, D., Beeler, N.M., and Hickman, S.H., 2023, Strength recovery in quartzite is controlled by changes in friction in experiments at hydrothermal conditions up to 200°C: Journal of Geophysical Research - Solid Earth, v. 128, no. 5, e2022JB025663, 18 p., https://doi.org/10.1029/2022JB025663.","productDescription":"e2022JB025663, 18 p.","ipdsId":"IP-142325","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":497992,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2022jb025663","text":"Publisher Index Page"},{"id":435361,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9DJXK42","text":"USGS data release","linkHelpText":"Hydrothermal friction experiments in quartzite: The effect of temperature and normal stress on strength recovery"},{"id":417959,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"128","issue":"5","noUsgsAuthors":false,"publicationDate":"2023-05-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Jeppson, Tamara Nicole 0000-0001-5526-5530","orcid":"https://orcid.org/0000-0001-5526-5530","contributorId":248768,"corporation":false,"usgs":true,"family":"Jeppson","given":"Tamara","email":"","middleInitial":"Nicole","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":875053,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Lockner, David A. 0000-0001-8630-6833","orcid":"https://orcid.org/0000-0001-8630-6833","contributorId":261920,"corporation":false,"usgs":true,"family":"Lockner","given":"David A.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":875054,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Beeler, Nicholas M. 0000-0002-3397-8481 nbeeler@usgs.gov","orcid":"https://orcid.org/0000-0002-3397-8481","contributorId":2682,"corporation":false,"usgs":true,"family":"Beeler","given":"Nicholas","email":"nbeeler@usgs.gov","middleInitial":"M.","affiliations":[{"id":234,"text":"Earthquake Hazards Program","active":true,"usgs":true},{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":875055,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hickman, Stephen H. 0000-0003-2075-9615 hickman@usgs.gov","orcid":"https://orcid.org/0000-0003-2075-9615","contributorId":2705,"corporation":false,"usgs":true,"family":"Hickman","given":"Stephen","email":"hickman@usgs.gov","middleInitial":"H.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true},{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":875056,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70243255,"text":"70243255 - 2023 - Kings of the North: Bridging disciplines to understand the effects of changing climate on Chinook salmon in the Arctic-Yukon-Kuskokwim Region","interactions":[],"lastModifiedDate":"2023-08-23T16:39:06.763227","indexId":"70243255","displayToPublicDate":"2023-04-24T06:33:02","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1657,"text":"Fisheries","onlineIssn":"1548-8446","printIssn":"0363-2415","active":true,"publicationSubtype":{"id":10}},"title":"Kings of the North: Bridging disciplines to understand the effects of changing climate on Chinook salmon in the Arctic-Yukon-Kuskokwim Region","docAbstract":"<div class=\"abstract-group \"><div class=\"article-section__content en main\"><p>Understanding how species are responding to environmental change is a central challenge for stewards and managers of fish and wildlife who seek to maintain harvest opportunities for communities and Indigenous peoples. This is a particularly daunting but increasingly important task in remote, high-latitude regions where environmental conditions are changing rapidly and data collection is logistically difficult. The Arctic-Yukon-Kuskokwim (AYK) region encompasses the northern extent of the Chinook Salmon<span>&nbsp;</span><i>Oncorhynchus tshawytscha</i><span>&nbsp;</span>range where populations are experiencing rapid rates of environmental change across both freshwater and marine habitats due to global climate change. Climate–salmon interactions in the AYK region are a particularly pressing issue as many local communities have a deep reliance on a subsistence way of life. Here, we synthesize perspectives shared at a recent workshop on Chinook Salmon declines in the AYK region. The objectives were to discuss current understandings of climate-Chinook Salmon interactions, develop a set of outstanding questions, review available data and its limitations in addressing these questions, and describe the perspectives expressed by participants in this workshop from diverse backgrounds. We conclude by suggesting pathways forward to integrate different types of information and build relationships among communities, academic partners, and fishery management agencies.</p></div></div>","language":"English","publisher":"American Fisheries Society","doi":"10.1002/fsh.10923","usgsCitation":"Feddern, M.L., Schoen, E.R., Shaftel, R., Cunningham, C.J., Chythlook, C., Connors, B.M., Murdoch, A.D., von Biela, V.R., and Woods, B., 2023, Kings of the North: Bridging disciplines to understand the effects of changing climate on Chinook salmon in the Arctic-Yukon-Kuskokwim Region: Fisheries, v. 48, no. 8, p. 331-343, https://doi.org/10.1002/fsh.10923.","productDescription":"13 p.","startPage":"331","endPage":"343","ipdsId":"IP-148154","costCenters":[{"id":65299,"text":"Alaska Science Center Ecosystems","active":true,"usgs":true}],"links":[{"id":443762,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://repository.library.noaa.gov/view/noaa/50626","text":"Publisher Index Page"},{"id":416747,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Canada, United States","state":"Alaska, British Columbia, Yukon","otherGeospatial":"Arctic–Yukon–Kuskokwim Region","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -172.229849362107,\n              68.42820241853951\n            ],\n            [\n              -171.9323394969524,\n              58.49221199439555\n            ],\n            [\n              -122.98264511343993,\n              57.542702366336584\n            ],\n            [\n              -133.6450295955814,\n              69.47066409150565\n            ],\n            [\n              -172.229849362107,\n              68.42820241853951\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"48","issue":"8","noUsgsAuthors":false,"publicationDate":"2023-05-31","publicationStatus":"PW","contributors":{"authors":[{"text":"Feddern, Megan L.","contributorId":304806,"corporation":false,"usgs":false,"family":"Feddern","given":"Megan","email":"","middleInitial":"L.","affiliations":[{"id":6752,"text":"University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":871685,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Schoen, Erik R.","contributorId":184107,"corporation":false,"usgs":false,"family":"Schoen","given":"Erik","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":871686,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Shaftel, Rebecca 0000-0002-4789-4211","orcid":"https://orcid.org/0000-0002-4789-4211","contributorId":248594,"corporation":false,"usgs":false,"family":"Shaftel","given":"Rebecca","email":"","affiliations":[{"id":37194,"text":"University of Alaska Anchorage","active":true,"usgs":false}],"preferred":false,"id":871687,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Cunningham, Curry J.","contributorId":304807,"corporation":false,"usgs":false,"family":"Cunningham","given":"Curry","email":"","middleInitial":"J.","affiliations":[{"id":6752,"text":"University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":871688,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Chythlook, Craig","contributorId":304808,"corporation":false,"usgs":false,"family":"Chythlook","given":"Craig","email":"","affiliations":[{"id":6752,"text":"University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":871689,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Connors, Brendan M.","contributorId":304809,"corporation":false,"usgs":false,"family":"Connors","given":"Brendan","email":"","middleInitial":"M.","affiliations":[{"id":13677,"text":"Fisheries and Oceans Canada","active":true,"usgs":false}],"preferred":false,"id":871690,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Murdoch, Alyssa D.","contributorId":304810,"corporation":false,"usgs":false,"family":"Murdoch","given":"Alyssa","email":"","middleInitial":"D.","affiliations":[{"id":66157,"text":"Carleton University, Wildlife Conservation Society Canada","active":true,"usgs":false}],"preferred":false,"id":871691,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"von Biela, Vanessa R. 0000-0002-7139-5981 vvonbiela@usgs.gov","orcid":"https://orcid.org/0000-0002-7139-5981","contributorId":3104,"corporation":false,"usgs":true,"family":"von Biela","given":"Vanessa","email":"vvonbiela@usgs.gov","middleInitial":"R.","affiliations":[{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":871692,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Woods, Brooke","contributorId":304811,"corporation":false,"usgs":false,"family":"Woods","given":"Brooke","email":"","affiliations":[{"id":56085,"text":"Woodwell Climate Research Center","active":true,"usgs":false}],"preferred":false,"id":871693,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70256636,"text":"70256636 - 2023 - Seasonal abundance and habitat associations of American Kestrels on the Southern High Plains of Texas","interactions":[],"lastModifiedDate":"2024-08-28T10:59:03.265255","indexId":"70256636","displayToPublicDate":"2023-04-24T05:57:12","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2442,"text":"Journal of Raptor Research","active":true,"publicationSubtype":{"id":10}},"title":"Seasonal abundance and habitat associations of American Kestrels on the Southern High Plains of Texas","docAbstract":"<p id=\"ID0EF\" class=\"first\">American Kestrel (<i>Falco sparverius</i>) populations are generally declining across the species' North American distribution but the population in the Southern High Plains region currently appears to be stable. Historical evidence suggests the region formerly had a low abundance of kestrels, and that their current numbers are due to landscape changes associated with European settlement. We conducted monthly surveys for American Kestrels across 2 yr to estimate seasonal densities and identify land cover associations in the Southern High Plains of Texas. We found an overall estimated density of 0.99 birds/km<sup>2</sup><span>&nbsp;</span>(95% CI = 0.406, 1.582) across the 2-yr period, with seasonal estimated densities highest in autumn and winter (0.92–2.53/ km<sup>2</sup>), and lowest in spring (0.49–0.67/km<sup>2</sup>). Whereas other studies have found that temperature influenced detection of wintering kestrels, we found an interaction of drought conditions and snow most strongly influenced the number of kestrels in our study area. Kestrels largely used land cover types in proportion to availability but there was some evidence of seasonal shifts. Generally, they tended to avoid cotton fields and sometimes selected for areas with woodlots, abandoned or occupied houses, and barns, all of which likely provided nesting and roosting opportunities. Our study provides the first contemporary assessment of seasonal abundance and habitat associations of American Kestrels in the Southern High Plains, where their presence and abundance has been unintentionally facilitated by landscape changes following settlement. We provide a baseline for population monitoring and studies assessing response to additional landscape changes (e.g., development of wind energy facilities) and a changing climate.</p>","language":"English","publisher":"BioOne","doi":"10.3356/JRR-22-22","usgsCitation":"Linner-Warren, K., Bibles, B., and Boal, C.W., 2023, Seasonal abundance and habitat associations of American Kestrels on the Southern High Plains of Texas: Journal of Raptor Research, v. 57, no. 2, p. 251-263, https://doi.org/10.3356/JRR-22-22.","productDescription":"13 p.","startPage":"251","endPage":"263","ipdsId":"IP-137751","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":433224,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"57","issue":"2","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Linner-Warren, Kristen","contributorId":341438,"corporation":false,"usgs":false,"family":"Linner-Warren","given":"Kristen","email":"","affiliations":[{"id":81738,"text":"Department of Natural Resources Management, Texas Tech University","active":true,"usgs":false}],"preferred":false,"id":908420,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bibles, Brent D.","contributorId":341439,"corporation":false,"usgs":false,"family":"Bibles","given":"Brent D.","affiliations":[{"id":81739,"text":"Unity College","active":true,"usgs":false}],"preferred":false,"id":908422,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Boal, Clint W. 0000-0001-6008-8911 cboal@usgs.gov","orcid":"https://orcid.org/0000-0001-6008-8911","contributorId":1909,"corporation":false,"usgs":true,"family":"Boal","given":"Clint","email":"cboal@usgs.gov","middleInitial":"W.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":908421,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70263407,"text":"70263407 - 2023 - Earthquake detection with tinyML","interactions":[],"lastModifiedDate":"2025-02-10T15:44:17.596407","indexId":"70263407","displayToPublicDate":"2023-04-24T00:00:00","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3372,"text":"Seismological Research Letters","onlineIssn":"1938-2057","printIssn":"0895-0695","active":true,"publicationSubtype":{"id":10}},"title":"Earthquake detection with tinyML","docAbstract":"<p><span>Earthquake detection is the critical first step in earthquake early warning (EEW) systems. For robust EEW systems, detection accuracy, detection latency, and sensor density are critical to providing real‐time earthquake alerts. Traditional EEW systems use fixed sensor networks or, more recently, networks of mobile phones equipped with microelectromechanical systems (MEMS) accelerometers. Internet of things edge devices, with built‐in tiny machine learning (tinyML) capable microcontrollers, and always‐on, internet‐connected, stationary MEMS accelerometers provide the opportunity to deploy ML‐based earthquake detection and warning using a single‐station approach at a global scale. Here, I test and evaluate tinyML deep learning algorithms for earthquake detection on a microcontroller. I show that the tinyML earthquake detection models can generalize to earthquakes outside the training set.</span></p>","language":"English","publisher":"GeoScienceWorld","doi":"10.1785/0220220322","usgsCitation":"Clements, T., 2023, Earthquake detection with tinyML: Seismological Research Letters, v. 94, no. 4, p. 2030-2039, https://doi.org/10.1785/0220220322.","productDescription":"10 p.","startPage":"2030","endPage":"2039","ipdsId":"IP-145890","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":481861,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"94","issue":"4","noUsgsAuthors":false,"publicationDate":"2023-04-24","publicationStatus":"PW","contributors":{"authors":[{"text":"Clements, Timothy Hugh 0000-0001-6632-1796","orcid":"https://orcid.org/0000-0001-6632-1796","contributorId":350753,"corporation":false,"usgs":true,"family":"Clements","given":"Timothy Hugh","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":926877,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70256479,"text":"70256479 - 2023 - A coupled human and natural systems framework to characterize emerging infectious diseases: The case of fibropapillomatosis in marine turtles","interactions":[],"lastModifiedDate":"2024-08-06T16:48:50.431037","indexId":"70256479","displayToPublicDate":"2023-04-23T11:46:19","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5762,"text":"Animals","active":true,"publicationSubtype":{"id":10}},"title":"A coupled human and natural systems framework to characterize emerging infectious diseases: The case of fibropapillomatosis in marine turtles","docAbstract":"Emerging infectious diseases of wildlife have markedly increased in the last few decades. Unsustainable, continuous, and rapid alterations within and between coupled human and natural systems have significantly disrupted wildlife disease dynamics. Direct and indirect anthropogenic effects, such as climate change, pollution, encroachment, urbanization, travel, and trade, can promote outbreaks of infectious diseases in wildlife. We constructed a coupled human and natural systems framework identifying three main wildlife disease risk factors behind these anthropogenic effects: (i) immune suppression, (ii) viral spillover, and (iii) disease propagation. Through complex and convoluted dynamics, each of the anthropogenic effect listed in our framework can lead, to some extent, to one or more of the identified risk factors accelerating disease outbreaks in wildlife. In this review, we present a novel framework to study anthropogenic impacts within coupled human and natural systems that facilitate emergence of infectious disease involving wildlife. We demonstrate the utility of the framework by applying it to Fibropapillomatosis disease of marine turtles. We aim to articulate the intricate and complex nature of anthropogenically-exacerbated wildlife infectious diseases as multifactorial. This paper supports the adoption of a One Health approach and invites the collaboration of multiple disciplines for the achievement of effective and long-lasting conservation and wildlife emerging diseases mitigation outcomes.","language":"English","publisher":"MDPI","doi":"10.3390/ani13091441","usgsCitation":"Manes, C., Carthy, R., and Hull, V., 2023, A coupled human and natural systems framework to characterize emerging infectious diseases: The case of fibropapillomatosis in marine turtles: Animals, v. 13, no. 9, 1441, 16 p., https://doi.org/10.3390/ani13091441.","productDescription":"1441, 16 p.","ipdsId":"IP-151093","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":443768,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/ani13091441","text":"Publisher Index Page"},{"id":432296,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"13","issue":"9","noUsgsAuthors":false,"publicationDate":"2023-04-23","publicationStatus":"PW","contributors":{"authors":[{"text":"Manes, Costanza","contributorId":340789,"corporation":false,"usgs":false,"family":"Manes","given":"Costanza","email":"","affiliations":[{"id":36221,"text":"University of Florida","active":true,"usgs":false}],"preferred":false,"id":907560,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Carthy, Raymond 0000-0001-8978-5083","orcid":"https://orcid.org/0000-0001-8978-5083","contributorId":219303,"corporation":false,"usgs":true,"family":"Carthy","given":"Raymond","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":907561,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hull, Vanessa","contributorId":340791,"corporation":false,"usgs":false,"family":"Hull","given":"Vanessa","email":"","affiliations":[{"id":36221,"text":"University of Florida","active":true,"usgs":false}],"preferred":false,"id":907562,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70268406,"text":"70268406 - 2023 - Chapter 12 - Explainable AI for understanding ML-derived vegetation products","interactions":[],"lastModifiedDate":"2025-06-25T14:17:08.250239","indexId":"70268406","displayToPublicDate":"2023-04-23T09:15:24","publicationYear":"2023","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"title":"Chapter 12 - Explainable AI for understanding ML-derived vegetation products","docAbstract":"<p><span>Current machine learning applications and algorithms have developed promise to produce autonomous systems that automatically perceive, learn, predict, and act on their own. However, the effectiveness of these systems is limited by the machine's current inability to explain their decisions, algorithmic paths, and actions to human users. The purpose of this chapter is to apply explainable artificial intelligence (XAI) to black-box models using an example of the&nbsp;</span><a class=\"topic-link\" title=\"Learn more about U.S. from ScienceDirect's AI-generated Topic Pages\" href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/united-states-of-america\" data-mce-href=\"https://www.sciencedirect.com/topics/earth-and-planetary-sciences/united-states-of-america\">U.S.</a><span>&nbsp;Geological Survey's LANDFIRE Existing Vegetation Type (EVT). This chapter also demonstrates the tools developed to assist scientists/analysts in understanding and trusting prediction outcomes of vegetation type that streamline development of the LANDFIRE EVT product.</span></p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Artificial intelligence in earth science: Best practices and fundamental challenges","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Elsevier Inc","doi":"10.1016/B978-0-323-91737-7.00008-6","usgsCitation":"Ganji, G., and Chow Lin, W., 2023, Chapter 12 - Explainable AI for understanding ML-derived vegetation products, chap. <i>of</i> Artificial intelligence in earth science: Best practices and fundamental challenges, p. 317-335, https://doi.org/10.1016/B978-0-323-91737-7.00008-6.","productDescription":"19 p.","startPage":"317","endPage":"335","ipdsId":"IP-135266","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":491276,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationDate":"2023-04-23","publicationStatus":"PW","contributors":{"authors":[{"text":"Ganji, Geetha Satya Mounika 0000-0003-2763-2617","orcid":"https://orcid.org/0000-0003-2763-2617","contributorId":357334,"corporation":false,"usgs":false,"family":"Ganji","given":"Geetha Satya Mounika","affiliations":[{"id":85411,"text":"KBR under contract to the USGS","active":true,"usgs":false}],"preferred":false,"id":941237,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chow Lin, Wai Hang 0000-0003-0628-7711","orcid":"https://orcid.org/0000-0003-0628-7711","contributorId":357335,"corporation":false,"usgs":false,"family":"Chow Lin","given":"Wai Hang","affiliations":[{"id":85411,"text":"KBR under contract to the USGS","active":true,"usgs":false}],"preferred":false,"id":941238,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70248270,"text":"70248270 - 2023 - Exploring the relevance of the multidimensionality of wildlife recreationists to conservation behaviors: A case study in Virginia","interactions":[],"lastModifiedDate":"2023-09-06T12:26:20.072182","indexId":"70248270","displayToPublicDate":"2023-04-23T07:22:30","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5803,"text":"Conservation Science and Practice","active":true,"publicationSubtype":{"id":10}},"title":"Exploring the relevance of the multidimensionality of wildlife recreationists to conservation behaviors: A case study in Virginia","docAbstract":"<div class=\"abstract-group \"><div class=\"article-section__content en main\"><p>Wildlife recreationists' participation in conservation behaviors could provide key support to the conservation efforts of state fish and wildlife agencies. However, little is known about how identifying with multiple forms of wildlife recreation (i.e., hunters, anglers, birders, wildlife viewers) may influence participation in conservation behaviors, specifically for supporting state fish and wildlife agencies and their conservation goals. Using a mixed-mode survey of Virginia wildlife recreationists, we explored the hypothesized relationship between individuals' participation in conservation behaviors and their identification with multiple forms of consumptive and nonconsumptive wildlife recreation. We found wildlife recreation identity is multidimensional, with many individuals identifying with consumptive and nonconsumptive identities simultaneously. Further, consumptive-only recreationists (i.e., hunters and/or anglers) participated in conservation behaviors less often than nonconsumptive-only recreationists (i.e., birders and/or wildlife viewers) and recreationists with both consumptive and nonconsumptive identities were less likely to support a state fish and wildlife agency in the future. Our findings underscore the importance of all types of wildlife recreationists, especially those with intersecting identities, as state fish and wildlife agencies work to advance conservation. Hence, developing multi-faceted engagement strategies may enhance support for state fish and wildlife agencies among their growing wildlife recreation constituency.</p></div></div>","language":"English","publisher":"Wiley","doi":"10.1111/csp2.12915","usgsCitation":"Grooms, B., Dayer, A., Barnes, J., Peele, A., Rutter, J., and Cole, N.W., 2023, Exploring the relevance of the multidimensionality of wildlife recreationists to conservation behaviors: A case study in Virginia: Conservation Science and Practice, v. 5, no. 6, e12915, 12 p., https://doi.org/10.1111/csp2.12915.","productDescription":"e12915, 12 p.","ipdsId":"IP-135275","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":443771,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/csp2.12915","text":"Publisher Index 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,{"id":70243129,"text":"70243129 - 2023 - Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape","interactions":[],"lastModifiedDate":"2023-05-01T12:17:28.735759","indexId":"70243129","displayToPublicDate":"2023-04-23T07:09:54","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1327,"text":"Conservation and resource management.","active":true,"publicationSubtype":{"id":10}},"title":"Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape","docAbstract":"<div class=\"html-p\">In Hawai’i, ecosystem conservation practitioners are increasingly considering the potential ecohydrological benefits from applied conservation action to mitigate the degrading impacts of runoff on native and restored ecosystems. One determinant of runoff is excess rainfall events where rainfall rates exceed the infiltration capacity of soils. To help understand runoff risks, we calculated the probability of excess rainfall events across the Hawaiian landscape by comparing the probability distributions of projected rainfall frequency and land-cover-specific infiltration capacity. We characterized soil infiltration capacity based on different land cover types (bare soil, grasses, and woody vegetation) and compared them to the frequency of large rainfall events under current and future climate scenarios. We then mapped the potential risk of excess rainfall across the main Hawaiian Islands. Our results show that land cover type has a very large effect on runoff risk as excess rainfall conditions are 234% more likely in bare soil and 75% more likely in grasslands compared to woody forests and shrublands. In contrast, projected shifts in rainfall intensity by end-of-century show little impact on these probabilities and thus, the risk of runoff. This indicates that the probability of excess rainfall is primarily driven by differences in land cover and not by current or potential shifts in rainfall patterns across the Hawaiian landscape. The ability to estimate the risk of potentially ecologically and economically costly runoff based on changes of land cover is useful for managers focused on invasive species control and restoration planning, especially for native and endemic ecosystems unique to the State of Hawai’i.</div>","language":"English","publisher":"MDPI","doi":"10.3390/conservation3020020","usgsCitation":"Fortini, L., Kaiser, L.R., Perkins, K., Xue, L., and Wang, Y., 2023, Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape: Conservation and resource management., v. 3, no. 2, p. 291-302, https://doi.org/10.3390/conservation3020020.","productDescription":"12 p.","startPage":"291","endPage":"302","ipdsId":"IP-147713","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":443774,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index 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 \"}}]}","volume":"3","issue":"2","noUsgsAuthors":false,"publicationDate":"2023-04-23","publicationStatus":"PW","contributors":{"authors":[{"text":"Fortini, Lucas Berio 0000-0002-5781-7295","orcid":"https://orcid.org/0000-0002-5781-7295","contributorId":236984,"corporation":false,"usgs":true,"family":"Fortini","given":"Lucas Berio","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"preferred":true,"id":871201,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kaiser, Lauren R.","contributorId":200422,"corporation":false,"usgs":false,"family":"Kaiser","given":"Lauren","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":871202,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Perkins, Kimberlie 0000-0001-8349-447X kperkins@usgs.gov","orcid":"https://orcid.org/0000-0001-8349-447X","contributorId":138544,"corporation":false,"usgs":true,"family":"Perkins","given":"Kimberlie","email":"kperkins@usgs.gov","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":871203,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Xue, Lulin","contributorId":301129,"corporation":false,"usgs":false,"family":"Xue","given":"Lulin","email":"","affiliations":[{"id":6648,"text":"National Center for Atmospheric Research","active":true,"usgs":false}],"preferred":false,"id":871204,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Wang, Yaping","contributorId":191943,"corporation":false,"usgs":false,"family":"Wang","given":"Yaping","email":"","affiliations":[],"preferred":false,"id":871205,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70244085,"text":"70244085 - 2023 - The energy–water limitation threshold explains divergent drought responses in tree growth, needle length, and stable isotope ratios","interactions":[],"lastModifiedDate":"2023-07-11T16:08:13.168104","indexId":"70244085","displayToPublicDate":"2023-04-23T07:09:20","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1837,"text":"Global Change Biology","active":true,"publicationSubtype":{"id":10}},"title":"The energy–water limitation threshold explains divergent drought responses in tree growth, needle length, and stable isotope ratios","docAbstract":"<div class=\"abstract-group  metis-abstract\"><div class=\"article-section__content en main\"><p>Predicted increases in extreme droughts will likely cause major shifts in carbon sequestration and forest composition. Although growth declines during drought are widely documented, an increasing number of studies have reported both positive and negative responses to the same drought. These divergent growth patterns may reflect thresholds (i.e., nonlinear responses) promoted by changes in the dominant climatic constraints on tree growth. Here we tested whether stemwood growth exhibited linear or nonlinear responses to temperature and precipitation and whether stemwood growth thresholds co-occurred with multiple thresholds in source and sink processes that limit tree growth. We extracted 772 tree cores, 1398 needle length records, and 1075 stable isotope samples from 27 sites across whitebark pine's (<i>Pinus albicaulis</i><span>&nbsp;</span>Engelm.) climatic niche in the Sierra Nevada. Our results indicated that a temperature threshold in stemwood growth occurred at 8.4°C (7.12–9.51°C; estimated using fall-spring maximum temperature). This threshold was significantly correlated with thresholds in foliar growth, as well as carbon (δ<sup>13</sup>C) and nitrogen (δ<sup>15</sup>N) stable isotope ratios, that emerged during drought. These co-occurring thresholds reflected the transition between energy- and water-limited tree growth (i.e., the E–W limitation threshold). This transition likely mediated carbon and nutrient cycling, as well as important differences in growth-defense trade-offs and drought adaptations. Furthermore, whitebark pine growing in energy-limited regions may continue to experience elevated growth in response to climate change. The positive effect of warming, however, may be offset by growth declines in water-limited regions, threatening the long-term sustainability of the recently listed whitebark pine species in the Sierra Nevada.</p></div></div>","language":"English","publisher":"Wiley","doi":"10.1111/gcb.16740","usgsCitation":"Dudney, J., Latimer, A.M., van Mantgem, P., Zald, H., Willing, C.E., Nesmith, J., Cribbs, J.E., and Milano, E.R., 2023, The energy–water limitation threshold explains divergent drought responses in tree growth, needle length, and stable isotope ratios: Global Change Biology, v. 29, no. 15, p. 4368-4382, https://doi.org/10.1111/gcb.16740.","productDescription":"18 p.","startPage":"4368","endPage":"4382","ipdsId":"IP-145144","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":443776,"rank":3,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/gcb.16740","text":"Publisher Index Page"},{"id":435363,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9D0E8OC","text":"USGS data release","linkHelpText":"Stem and Needle Growth for Whitebark Pine in the Sierra Nevada"},{"id":417637,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"29","issue":"15","noUsgsAuthors":false,"publicationDate":"2023-05-16","publicationStatus":"PW","contributors":{"authors":[{"text":"Dudney, Joan 0000-0003-3986-065X","orcid":"https://orcid.org/0000-0003-3986-065X","contributorId":305558,"corporation":false,"usgs":false,"family":"Dudney","given":"Joan","email":"","affiliations":[{"id":66253,"text":"Environmental Studies Program, Santa Barbara, California, USA","active":true,"usgs":false}],"preferred":false,"id":874448,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Latimer, Andrew M.","contributorId":229043,"corporation":false,"usgs":false,"family":"Latimer","given":"Andrew","email":"","middleInitial":"M.","affiliations":[{"id":41559,"text":"Department of Plant Sciences, University of California Davis, One Shields Ave., Davis, CA, 95616, USA","active":true,"usgs":false}],"preferred":false,"id":874449,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"van Mantgem, Phillip J. 0000-0002-3068-9422","orcid":"https://orcid.org/0000-0002-3068-9422","contributorId":204320,"corporation":false,"usgs":true,"family":"van Mantgem","given":"Phillip J.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":874450,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Zald, Harold S.","contributorId":305561,"corporation":false,"usgs":false,"family":"Zald","given":"Harold S.","affiliations":[],"preferred":false,"id":874451,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Willing, Claire E 0000-0002-7563-242X","orcid":"https://orcid.org/0000-0002-7563-242X","contributorId":305560,"corporation":false,"usgs":false,"family":"Willing","given":"Claire","email":"","middleInitial":"E","affiliations":[{"id":62182,"text":"Department of Biology, Stanford University, Stanford, California, USA","active":true,"usgs":false}],"preferred":false,"id":874452,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Nesmith, Jonathan 0000-0002-8930-9105","orcid":"https://orcid.org/0000-0002-8930-9105","contributorId":306029,"corporation":false,"usgs":false,"family":"Nesmith","given":"Jonathan","email":"","affiliations":[{"id":66353,"text":"USDA FS","active":true,"usgs":false}],"preferred":false,"id":874453,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Cribbs, Jennifer E","contributorId":245220,"corporation":false,"usgs":false,"family":"Cribbs","given":"Jennifer","email":"","middleInitial":"E","affiliations":[{"id":49124,"text":"National Park Service, Sierra Nevada Network Inventory & Monitoring Program","active":true,"usgs":false}],"preferred":false,"id":874454,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Milano, Elizabeth R. 0000-0003-4143-9303","orcid":"https://orcid.org/0000-0003-4143-9303","contributorId":292788,"corporation":false,"usgs":false,"family":"Milano","given":"Elizabeth","email":"","middleInitial":"R.","affiliations":[{"id":63006,"text":"USFS; formerly USGS","active":true,"usgs":false}],"preferred":false,"id":874455,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70249273,"text":"70249273 - 2023 - Geoelectric monitoring of the electric potential field of the Lower Rio Grande before, during, and after Intermittent Streamflow, May–October, 2022","interactions":[],"lastModifiedDate":"2023-10-03T11:50:01.416373","indexId":"70249273","displayToPublicDate":"2023-04-23T06:45:05","publicationYear":"2023","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3709,"text":"Water","active":true,"publicationSubtype":{"id":10}},"title":"Geoelectric monitoring of the electric potential field of the Lower Rio Grande before, during, and after Intermittent Streamflow, May–October, 2022","docAbstract":"<div class=\"html-p\">Understanding the intermittent hydraulic connectivity between ephemeral streams and alluvial aquifers is a key challenge for managing water resources in arid environments. The lower Rio Grande flows for short, discontinuous periods during the irrigation season through the Mesilla Basin in southeastern New Mexico and southwestern Texas. Hydraulic connections between the Rio Grande and the Rio Grande alluvial aquifer in the Mesilla Basin vary spatially and temporally and are not well understood. Self-potential (SP) monitoring and time-lapse electric resistivity tomography (ERT) were therefore performed along linear cross-sections spanning the riverbed and flood plain for more than 4 months to monitor the transient hydraulic connection between the river and the alluvial aquifer by measuring time-lapse changes in the electric potential field in the riverbed and flood plain. The monitoring period began on 21 May 2022, when the riverbed was completely dry, continued through the irrigation season while streamflow was provided by reservoir releases from upstream dams, and ended on 4 October 2022, when the riverbed was again dry. SP monitoring data show (1) a background condition in the dry riverbed consisting of (a) a positive electric potential anomaly with a maximum amplitude of about +100 mV attributed predominantly to a subsurface vertical salt concentration gradient and (b) diurnal electric potential fluctuations with amplitudes of 40,000–90,000 mV attributed to near-surface heat conduction driven by weather variability, in addition to (2) a streaming potential anomaly during the irrigation season with a maximum amplitude of about −3500 mV whose transient behavior clearly exhibited a change from the background anomaly to depict exclusively losing streamflow conditions that persisted through the irrigation season. Time-lapse ERT monitoring results depict rapid infiltration of streamflow into the subsurface and imply the river and Rio Grande alluvial aquifer established a full hydraulic connection within a few hours after streamflow arrival at the monitoring site. SP monitoring data show an apparent transition from hydraulic connection to disconnection at the end of the irrigation season and indicate that the transitional phase between connection and disconnection may last substantially longer than the transition from disconnection to connection. The combination of SP and ERT monitoring demonstrated herein shows the potential for broader applications of time-lapse monitoring of hydraulic intermittency and near-surface heat fluxes in different rivers.</div>","language":"English","publisher":"MDPI","doi":"10.3390/w15091652","usgsCitation":"Ikard, S., Carroll, K.C., Rucker, D.F., Teeple, A., Payne, J.D., Tsai, C., Fuchs, E.H., and Jamil, A., 2023, Geoelectric monitoring of the electric potential field of the Lower Rio Grande before, during, and after Intermittent Streamflow, May–October, 2022: Water, v. 15, no. 9, 1652, 47 p., https://doi.org/10.3390/w15091652.","productDescription":"1652, 47 p.","ipdsId":"IP-148135","costCenters":[{"id":48595,"text":"Oklahoma-Texas Water Science Center","active":true,"usgs":true}],"links":[{"id":443779,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/w15091652","text":"Publisher Index Page"},{"id":435364,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9TBK3NT","text":"USGS data release","linkHelpText":"Time-lapse self-potential, electric resistivity tomography, streamflow, groundwater-level, and weather-station datasets for the lower Rio Grande, southeast New Mexico, May&amp;amp;amp;amp;ndash;October, 2022"},{"id":421526,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"New Mexico, Texas","otherGeospatial":"Lower Rio Grande","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -107.01035654785272,\n              32.56208160667184\n            ],\n            [\n              -107.01035654785272,\n              31.706194150636207\n            ],\n            [\n              -106.246806743165,\n              31.706194150636207\n            ],\n            [\n              -106.246806743165,\n              32.56208160667184\n            ],\n            [\n              -107.01035654785272,\n              32.56208160667184\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"15","issue":"9","noUsgsAuthors":false,"publicationDate":"2023-04-23","publicationStatus":"PW","contributors":{"authors":[{"text":"Ikard, Scott 0000-0002-8304-4935","orcid":"https://orcid.org/0000-0002-8304-4935","contributorId":201775,"corporation":false,"usgs":true,"family":"Ikard","given":"Scott","affiliations":[{"id":583,"text":"Texas Water Science Center","active":true,"usgs":true}],"preferred":true,"id":884960,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Carroll, Kenneth C. 0000-0003-2097-9589","orcid":"https://orcid.org/0000-0003-2097-9589","contributorId":247827,"corporation":false,"usgs":false,"family":"Carroll","given":"Kenneth","email":"","middleInitial":"C.","affiliations":[{"id":12628,"text":"New Mexico State University","active":true,"usgs":false}],"preferred":false,"id":884961,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rucker, Dale F. 0000-0002-8930-2747","orcid":"https://orcid.org/0000-0002-8930-2747","contributorId":294463,"corporation":false,"usgs":false,"family":"Rucker","given":"Dale","email":"","middleInitial":"F.","affiliations":[{"id":63573,"text":"hydroGEOPHYSICS, Inc.","active":true,"usgs":false}],"preferred":false,"id":884962,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Teeple, Andrew 0000-0003-1781-8354 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University","active":true,"usgs":false}],"preferred":false,"id":884965,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Fuchs, Erek H. 0000-0001-9170-9469","orcid":"https://orcid.org/0000-0001-9170-9469","contributorId":270989,"corporation":false,"usgs":false,"family":"Fuchs","given":"Erek","email":"","middleInitial":"H.","affiliations":[{"id":56244,"text":"Elephant Butte Irrigation District","active":true,"usgs":false}],"preferred":false,"id":884966,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Jamil, Ahsan","contributorId":330449,"corporation":false,"usgs":false,"family":"Jamil","given":"Ahsan","email":"","affiliations":[{"id":12628,"text":"New Mexico State University","active":true,"usgs":false}],"preferred":false,"id":884967,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
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