{"pageNumber":"393","pageRowStart":"9800","pageSize":"25","recordCount":165252,"records":[{"id":70228474,"text":"70228474 - 2022 - Epidemiological differences between sexes affect management efficacy in simulated chronic wasting disease systems","interactions":[],"lastModifiedDate":"2022-04-11T16:55:29.843688","indexId":"70228474","displayToPublicDate":"2022-02-11T10:42:35","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2163,"text":"Journal of Applied Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Epidemiological differences between sexes affect management efficacy in simulated chronic wasting disease systems","docAbstract":"<ol class=\"\"><li>Sex-based differences in physiology, behaviour and demography commonly result in differences in disease prevalence. However, sex differences in prevalence may reflect exposure rather than transmission, which could affect disease control programmes. One potential example is chronic wasting disease (CWD), which has been observed at greater prevalence among male than female deer.</li><li>We used an age- and sex-structured simulation model to explore harvest-based management of CWD under three different transmission scenarios that all generate higher male prevalence: (1) increased male susceptibility, (2) high male-to-male transmission or (3) high female-to-male transmission.</li><li>Both female and male harvests were required to limit CWD epidemics across all transmission scenarios (approximated by<span>&nbsp;</span><i>R</i><sub>0</sub>), though invasion was more likely under high female-to-male transmission.</li><li>In simulations, heavily male-biased harvests controlled CWD epidemics and maintained large host populations under high male-to-male transmission and increased male susceptibility scenarios. However, male-biased harvests were ineffective under high female-to-male transmission. Instead, female-biased harvests were able to limit disease transmission under high female-to-male transmission but incurred a trade-off with smaller population sizes.</li><li><i>Synthesis and applications</i>. Higher disease prevalence in a sex or age group may be due to higher exposure or susceptibility but does not necessarily indicate if that group is responsible for more disease transmission. We showed that multiple processes can result in the pattern of higher male prevalence, but that population-level management interventions must focus on the sex responsible for disease transmission, not just those that are most exposed.</li></ol>","language":"English","publisher":"Wiley","doi":"10.1111/1365-2664.14125","usgsCitation":"Rogers, W.J., Brandell, E.E., and Cross, P., 2022, Epidemiological differences between sexes affect management efficacy in simulated chronic wasting disease systems: Journal of Applied Ecology, v. 59, no. 4, p. 1122-1133, https://doi.org/10.1111/1365-2664.14125.","productDescription":"12 p.","startPage":"1122","endPage":"1133","ipdsId":"IP-123579","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":448823,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/1365-2664.14125","text":"Publisher Index Page"},{"id":395849,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"59","issue":"4","noUsgsAuthors":false,"publicationDate":"2022-02-09","publicationStatus":"PW","contributors":{"editors":[{"text":"McCallum, Hamish","contributorId":174852,"corporation":false,"usgs":false,"family":"McCallum","given":"Hamish","affiliations":[],"preferred":false,"id":834513,"contributorType":{"id":2,"text":"Editors"},"rank":1}],"authors":[{"text":"Rogers, William J.","contributorId":173588,"corporation":false,"usgs":false,"family":"Rogers","given":"William","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":834384,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Brandell, Ellen E.","contributorId":253140,"corporation":false,"usgs":false,"family":"Brandell","given":"Ellen","email":"","middleInitial":"E.","affiliations":[{"id":7260,"text":"Pennsylvania State University","active":true,"usgs":false}],"preferred":false,"id":834385,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cross, Paul C. 0000-0001-8045-5213","orcid":"https://orcid.org/0000-0001-8045-5213","contributorId":204814,"corporation":false,"usgs":true,"family":"Cross","given":"Paul C.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":834386,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70228487,"text":"70228487 - 2022 - Population structure, intergroup interaction, and human contact govern infectious disease impacts in mountain gorilla populations","interactions":[],"lastModifiedDate":"2022-06-16T15:14:55.320322","indexId":"70228487","displayToPublicDate":"2022-02-11T10:16:40","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":731,"text":"American Journal of Primatology","active":true,"publicationSubtype":{"id":10}},"title":"Population structure, intergroup interaction, and human contact govern infectious disease impacts in mountain gorilla populations","docAbstract":"<p>Infectious zoonotic diseases are a threat to wildlife conservation and global health. They are especially a concern for wild apes, which are vulnerable to many human infectious diseases. As ecotourism, deforestation, and great ape field research increase, the threat of human-sourced infections to wild populations becomes more substantial and could result in devastating population declines. The endangered mountain gorillas (<i>Gorilla beringei beringei</i>) of the Virunga Massif in east-central Africa suffer periodic disease outbreaks and are exposed to infections from human-sourced pathogens. It is important to understand the possible risks of disease introduction and spread in this population and how human contact may facilitate disease transmission. Here we present and evaluate an individual-based, stochastic, discrete-time disease transmission model to predict epidemic outcomes and better understand health risks to the Virunga mountain gorilla population. To model disease transmission we have derived estimates for gorilla contact, interaction, and migration rates. The model shows that the social structure of gorilla populations plays a profound role in governing disease impacts with subdivided populations experiencing less than 25% of the outbreak levels of a single homogeneous population. It predicts that gorilla group dispersal and limited group interactions are strong factors in preventing widespread population-level outbreaks of infectious disease after such diseases have been introduced into the population. However, even a moderate amount of human contact increases disease spread and can lead to population-level outbreaks.</p>","language":"English","publisher":"Wiley","doi":"10.1002/ajp.23350","usgsCitation":"Whittier, C.A., Nutter, F.B., Johnson, P.L., Cross, P., Lloyd-Smith, J., Slenning, B.D., and Stoskopf, M.K., 2022, Population structure, intergroup interaction, and human contact govern infectious disease impacts in mountain gorilla populations: American Journal of Primatology, v. 84, no. 4-5, e23350, https://doi.org/10.1002/ajp.23350.","productDescription":"e23350","ipdsId":"IP-127784","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":395847,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Democratic Republic of the Congo, Rwanda, Uganda","otherGeospatial":"Virunga Massif","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n   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]\n}","volume":"84","issue":"4-5","noUsgsAuthors":false,"publicationDate":"2021-12-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Whittier, Christopher A. 0000-0001-9626-6513","orcid":"https://orcid.org/0000-0001-9626-6513","contributorId":275919,"corporation":false,"usgs":false,"family":"Whittier","given":"Christopher","email":"","middleInitial":"A.","affiliations":[{"id":6936,"text":"Tufts University","active":true,"usgs":false}],"preferred":false,"id":834410,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Nutter, Felicia B.","contributorId":8070,"corporation":false,"usgs":false,"family":"Nutter","given":"Felicia","email":"","middleInitial":"B.","affiliations":[{"id":6936,"text":"Tufts University","active":true,"usgs":false}],"preferred":false,"id":834411,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Johnson, Philip L. F. 0000-0001-6087-7064","orcid":"https://orcid.org/0000-0001-6087-7064","contributorId":275920,"corporation":false,"usgs":false,"family":"Johnson","given":"Philip","email":"","middleInitial":"L. F.","affiliations":[{"id":7083,"text":"University of Maryland","active":true,"usgs":false}],"preferred":false,"id":834412,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Cross, Paul C. 0000-0001-8045-5213","orcid":"https://orcid.org/0000-0001-8045-5213","contributorId":204814,"corporation":false,"usgs":true,"family":"Cross","given":"Paul C.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":834413,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lloyd-Smith, James O.","contributorId":31354,"corporation":false,"usgs":true,"family":"Lloyd-Smith","given":"James O.","affiliations":[],"preferred":false,"id":834414,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Slenning, Barrett D.","contributorId":275924,"corporation":false,"usgs":false,"family":"Slenning","given":"Barrett","email":"","middleInitial":"D.","affiliations":[{"id":49830,"text":"North Carolina University","active":true,"usgs":false}],"preferred":false,"id":834415,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Stoskopf, Michael K.","contributorId":83817,"corporation":false,"usgs":true,"family":"Stoskopf","given":"Michael","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":834416,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70232514,"text":"70232514 - 2022 - Variation in foraging patterns as reflected by floral resources used by male vs female bees of selected species at Badlands National Park, SD","interactions":[],"lastModifiedDate":"2022-07-06T14:51:56.176386","indexId":"70232514","displayToPublicDate":"2022-02-11T09:45:05","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5819,"text":"Arthropod-Plant Interactions","active":true,"publicationSubtype":{"id":10}},"title":"Variation in foraging patterns as reflected by floral resources used by male vs female bees of selected species at Badlands National Park, SD","docAbstract":"Female and male bees forage for different reasons: females provision nests with pollen appropriate for larval development and consume nectar for energy while males need only fuel their own energetic requirements.  The expectation, therefore, is that females should visit fewer floral resource species than males, due to females’ focus on host plant species and their tie to the nest location.  We used pollen collected from bees’ bodies and the flowers they were collected on to infer floral resource use in 2010-2012 at Badlands National Park, SD, USA.  We collected bees on 24 1-ha plots centered on particular plant species.  We compared number of floral species and families (1) associated with individual female and male bees (via generalized linear mixed models) and (2) accumulated by each sex (using rarefaction); and (3) effect of variation between sexes in plant-bee interactions via modularity analyses.  Analyses were restricted to bee species with > 5 individuals per sex.  Contrary to expectation, female and male bees differed infrequently in the number of floral resources they had visited, both on single foraging bouts and collectively when accumulated across all males and females of a species.  When males and females did differ, males visited fewer floral species than females.  Generalist and specialist bee species did not differ markedly in floral resource use by females and males.  When separated by sex, seven of eleven species occupied different modules than they did when analyzed as a species; most of the bee species were connectors, thus important for stability of the network during perturbations.","language":"English","publisher":"Springer","doi":"10.1007/s11829-021-09881-x","usgsCitation":"Larson, D.L., Portman, Z.M., Larson, J., and Buhl, D.A., 2022, Variation in foraging patterns as reflected by floral resources used by male vs female bees of selected species at Badlands National Park, SD: Arthropod-Plant Interactions, v. 16, p. 145-157, https://doi.org/10.1007/s11829-021-09881-x.","productDescription":"13 p.","startPage":"145","endPage":"157","ipdsId":"IP-133064","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":448825,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1007/s11829-021-09881-x","text":"Publisher Index Page"},{"id":403066,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"South Dakota","otherGeospatial":"Badlands National Park","volume":"16","noUsgsAuthors":false,"publicationDate":"2022-02-11","publicationStatus":"PW","contributors":{"authors":[{"text":"Larson, Diane L. 0000-0001-5202-0634 dlarson@usgs.gov","orcid":"https://orcid.org/0000-0001-5202-0634","contributorId":292764,"corporation":false,"usgs":true,"family":"Larson","given":"Diane","email":"dlarson@usgs.gov","middleInitial":"L.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":845742,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Portman, Zachary M.","contributorId":264397,"corporation":false,"usgs":false,"family":"Portman","given":"Zachary","email":"","middleInitial":"M.","affiliations":[{"id":54455,"text":"Dept. of Entomology, University of Minnesota","active":true,"usgs":false}],"preferred":false,"id":845743,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Larson, Jennifer 0000-0002-6259-0101","orcid":"https://orcid.org/0000-0002-6259-0101","contributorId":216120,"corporation":false,"usgs":true,"family":"Larson","given":"Jennifer","email":"","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":845744,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Buhl, Deborah A. 0000-0002-8563-5990 dbuhl@usgs.gov","orcid":"https://orcid.org/0000-0002-8563-5990","contributorId":146226,"corporation":false,"usgs":true,"family":"Buhl","given":"Deborah","email":"dbuhl@usgs.gov","middleInitial":"A.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":845745,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70229137,"text":"70229137 - 2022 - Impact of fluid-rock interaction on strength and hydraulic transmissivity rvolution in shear fractures under hydrothermal conditions","interactions":[],"lastModifiedDate":"2022-03-02T12:03:43.295177","indexId":"70229137","displayToPublicDate":"2022-02-11T08:21:07","publicationYear":"2022","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Impact of fluid-rock interaction on strength and hydraulic transmissivity rvolution in shear fractures under hydrothermal conditions","docAbstract":"<p>Reactivated shear fractures contribute to the creation of pervasive fracture networks in geothermal systems. The creation, reactivation, and sustainability of fracture networks depend on complex coupling among thermal, hydraulic, mechanical, and chemical (THMC) processes. However, most laboratory experiments focus either solely on how fluid transport properties evolve in stationary fractures at elevated temperatures or on how strength evolves in shear faults at room temperature. Studies that examine the combined evolution of these properties, especially under hydrothermal conditions, are limited. Laboratory restrengthening tests, referred to as slide-hold-slide (SHS), measure the difference between the steady sliding strength and the peak shear strength immediately following a hold period at constant stress or displacement. We present the results of five SHS experiments on Westerly granite bare surfaces. These experiments are combined with in-plane flow tests and conducted at an effective confining pressure of 20 MPa and temperatures of 23 and 200˚C. Consistent with previous studies, we observe a greater reduction in fluid transmissivity at 200˚C than at 23˚C and, generally, strength increasing with log(hold duration). However, there are deviations from the expected frictional healing behavior that likely relate to mineralogy and pore fluid chemical equilibrium. For example, under no-flow conditions where fluid is allowed to equilibrate with the rock, restrengthening rate of coefficient of friction is initially 0.02 per decade change in hold time (decade<sup>-1</sup>) for holds ≤ 5x10<sup>4</sup> s. Contrary to expected behavior, time-dependent reduction in frictional healing occurs at a rate of -0.03 decade<sup>-1 </sup>for holds longer than 5x10<sup>4 </sup>s. For flow-through tests in which undersaturated fluid is continuously introduced to the fault surface, this reduction begins earlier, starting at 5x10<sup>3 </sup>s, but at the same rate of -0.03 decade<sup>-1</sup>. The earlier onset of reduction in frictional healing under the continuous flow conditions suggests that the process underlying the behavior is related to chemical equilibrium. The mechanisms behind the complex healing behavior are not fully understood but it is apparent that fault zone restrengthening under hydrothermal conditions is the result of multiple interacting processes.</p>","largerWorkTitle":"Proceedings, 47th workshop on geothermal reservoir engineering","conferenceTitle":"47th Workshop on Geothermal Reservoir Engineering","conferenceDate":"February 7-9, 2022","conferenceLocation":"Stanford, CA","language":"English","publisher":"Stanford University","usgsCitation":"Jeppson, T.N., and Lockner, D., 2022, Impact of fluid-rock interaction on strength and hydraulic transmissivity rvolution in shear fractures under hydrothermal conditions, <i>in</i> Proceedings, 47th workshop on geothermal reservoir engineering, Stanford, CA, February 7-9, 2022, SGP-TR-223, 10 p.","productDescription":"SGP-TR-223, 10 p.","ipdsId":"IP-136599","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":396597,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":396584,"type":{"id":15,"text":"Index Page"},"url":"https://pangea.stanford.edu/ERE/db/GeoConf/papers/SGW/2022/Jeppson.pdf"}],"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Jeppson, Tamara Nicole 0000-0001-5526-5530","orcid":"https://orcid.org/0000-0001-5526-5530","contributorId":248768,"corporation":false,"usgs":true,"family":"Jeppson","given":"Tamara","email":"","middleInitial":"Nicole","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":836729,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Lockner, David A. 0000-0001-8630-6833","orcid":"https://orcid.org/0000-0001-8630-6833","contributorId":261920,"corporation":false,"usgs":true,"family":"Lockner","given":"David A.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":836730,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70232359,"text":"70232359 - 2022 - Stable isotopes provide insight into sources and cycling of N compounds in the Sacramento-San Joaquin Delta, California, USA","interactions":[],"lastModifiedDate":"2022-06-29T12:17:10.512083","indexId":"70232359","displayToPublicDate":"2022-02-11T07:13:54","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3352,"text":"Science of the Total Environment","active":true,"publicationSubtype":{"id":10}},"title":"Stable isotopes provide insight into sources and cycling of N compounds in the Sacramento-San Joaquin Delta, California, USA","docAbstract":"<div id=\"ab0005\" class=\"abstract author\" lang=\"en\"><div id=\"as0005\"><p id=\"sp0055\"><span>River deltas and their diverse array of&nbsp;aquatic environments&nbsp;are increasingly impacted by anthropogenic inputs of nitrogen (N). These inputs can alter the N&nbsp;biogeochemistry&nbsp;of these systems and promote undesirable phenomena including harmful algae blooms and invasive aquatic&nbsp;macrophytes. To examine N sources and biogeochemical processes in the Sacramento-San Joaquin Delta, a river delta located in central California, USA, that is fed primarily by the Sacramento River, we utilized a multi-tracer approach that measured N species concentrations and&nbsp;stable isotope&nbsp;values monthly from April 2011 to November 2012 in samples collected from the channelized mainstem of the Sacramento River, two channelized distributaries of the Sacramento River, and the Cache Slough Complex, a network of Sacramento River tributaries and shallow water wetland habitat. We found that the Sacramento River and its channelized distributaries received N primarily in the form of NH</span><sub>4</sub><sup>+</sup><span>&nbsp;</span>from treated wastewater effluent and that NH<sub>4</sub><sup>+</sup><span>&nbsp;</span>was lost rapidly while NO<sub>3</sub><sup>−</sup><span>&nbsp;was gained more slowly during subsequent downstream transit, driven by an array of biogeochemical processes whose identities could be constrained via examination of stable isotope values. The Cache Slough Complex, which was characterized by lower net flows and higher water residence times than the Sacramento River and its distributaries, received variable inputs of&nbsp;low conductivity&nbsp;water elevated in NH</span><sub>4</sub><sup>+</sup><span>&nbsp;</span>from the Sacramento River and higher conductivity water elevated in NO<sub>3</sub><sup>−</sup><span>&nbsp;</span>from landward tributaries. Deviations from expected conservative mixing of these sources were spatially variable but broadly indicative of local inputs of treated wastewater effluent NO<sub>3</sub><sup>−</sup>, conversion of Sacramento River NH<sub>4</sub><sup>+</sup><span>&nbsp;</span>to NO<sub>3</sub><sup>−</sup><span>&nbsp;</span>via nitrification, uptake of NH<sub>4</sub><sup>+</sup><span>&nbsp;</span>and NO<sub>3</sub><sup>−</sup><span>&nbsp;by&nbsp;phytoplankton, and&nbsp;remineralization&nbsp;of organic N. These findings highlight both the diversity in N dynamics in anthropogenically impacted river delta environments and the utility of a multi-tracer approach in constraining these processes in such complex systems.</span></p></div></div><div id=\"ab0010\" class=\"abstract graphical\" lang=\"en\"><br></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.scitotenv.2021.151592","usgsCitation":"Fackrell, J.K., Kraus, T.E., Young, M.B., Kendall, C., and Peek, S., 2022, Stable isotopes provide insight into sources and cycling of N compounds in the Sacramento-San Joaquin Delta, California, USA: Science of the Total Environment, v. 816, 151592, 13 p., https://doi.org/10.1016/j.scitotenv.2021.151592.","productDescription":"151592, 13 p.","ipdsId":"IP-129598","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true},{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":402669,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Sacramento-San Joaquin Delta","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -121.8988037109375,\n              37.75768707689704\n            ],\n            [\n              -120.75622558593749,\n              37.75768707689704\n            ],\n            [\n              -120.75622558593749,\n              38.997841307500714\n            ],\n            [\n              -121.8988037109375,\n              38.997841307500714\n            ],\n            [\n              -121.8988037109375,\n              37.75768707689704\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"816","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Fackrell, Joseph K. 0000-0001-8148-3734","orcid":"https://orcid.org/0000-0001-8148-3734","contributorId":225515,"corporation":false,"usgs":true,"family":"Fackrell","given":"Joseph","email":"","middleInitial":"K.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":845339,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kraus, Tamara E. C. 0000-0002-5187-8644 tkraus@usgs.gov","orcid":"https://orcid.org/0000-0002-5187-8644","contributorId":147560,"corporation":false,"usgs":true,"family":"Kraus","given":"Tamara","email":"tkraus@usgs.gov","middleInitial":"E. C.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":845340,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Young, Megan B. 0000-0002-0229-4108 mbyoung@usgs.gov","orcid":"https://orcid.org/0000-0002-0229-4108","contributorId":3315,"corporation":false,"usgs":true,"family":"Young","given":"Megan","email":"mbyoung@usgs.gov","middleInitial":"B.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":845341,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kendall, Carol 0000-0002-0247-3405 ckendall@usgs.gov","orcid":"https://orcid.org/0000-0002-0247-3405","contributorId":1462,"corporation":false,"usgs":true,"family":"Kendall","given":"Carol","email":"ckendall@usgs.gov","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":845342,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Peek, Sara 0000-0002-9770-6557","orcid":"https://orcid.org/0000-0002-9770-6557","contributorId":209971,"corporation":false,"usgs":true,"family":"Peek","given":"Sara","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":845343,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70229413,"text":"70229413 - 2022 - Diverse native island flora shows rapid initial passive recovery after exotic herbivore removal on Santa Rosa Island, California","interactions":[],"lastModifiedDate":"2023-03-24T16:56:01.075632","indexId":"70229413","displayToPublicDate":"2022-02-11T06:04:10","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1018,"text":"Biological Invasions","active":true,"publicationSubtype":{"id":10}},"title":"Diverse native island flora shows rapid initial passive recovery after exotic herbivore removal on Santa Rosa Island, California","docAbstract":"<div id=\"Abs1-section\" class=\"c-article-section\"><div id=\"Abs1-content\" class=\"c-article-section__content\"><p>Removing exotic vertebrates from islands is an increasingly common and potentially effective strategy for protecting biodiversity. Yet, surprisingly few studies evaluate large-scale effects of island removals on native plants. We surveyed 431 hectares of habitat in 7 canyons on Santa Rosa Island just after exotic herbivore control began (1994–1996), and again after two herbivore species had been eradicated and ~ 90% of herbivores removed (2010–2012). We searched for 68 endemic and/or rare native plant taxa, mapping and recording abundances for the 39 found. Initially most of these 39 species were absent from most canyons (79.9% species-canyon combinations). Nearly 35% of absences changed to presences by 2010–2012, while only 5.5% of presences changed to absences. Thirty-six of these 39 species increased in total area, and 38 increased in total abundance. Graminoids increased more and shrubs less than other life histories, for both apparent colonizations and abundances. Beta diversity and species turnover between canyons was high at both surveys. Although a diversity of the 39 located taxa showed substantial gains, nearly half remained uncommon in 2010–2012. These results reinforce the devastating effects of exotic vertebrate herbivores on island native plants, particularly long-lived, slow-growing species. They also demonstrate significant potential benefits of exotic herbivore removal even without other active restoration, not only for vegetative cover but for a number of rare taxa. Our surveys were more spatially extensive than most post-removal studies; high spatial turnover in these data suggests that larger-scale monitoring may be critical to capture full effects of exotic animal removal.</p></div></div>","language":"English","publisher":"Springer","doi":"10.1007/s10530-022-02735-4","usgsCitation":"Thomson, D.M., McEachern, K., Schultz, E., Niessen, K.G., Wilken, D., Chess, K.A., Cole, L.F., Oliver, R.Y., Phillips, J.D., and Tucker, A., 2022, Diverse native island flora shows rapid initial passive recovery after exotic herbivore removal on Santa Rosa Island, California: Biological Invasions, v. 24, p. 2635-1649, https://doi.org/10.1007/s10530-022-02735-4.","productDescription":"15 p.","startPage":"2635","endPage":"1649","ipdsId":"IP-121892","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":396772,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Santa Rosa Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -120.48431396484375,\n              33.779147331286474\n            ],\n            [\n              -119.77294921874999,\n              33.779147331286474\n            ],\n            [\n              -119.77294921874999,\n              34.14136162745489\n            ],\n            [\n              -120.48431396484375,\n              34.14136162745489\n            ],\n            [\n              -120.48431396484375,\n              33.779147331286474\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"24","noUsgsAuthors":false,"publicationDate":"2022-02-11","publicationStatus":"PW","contributors":{"authors":[{"text":"Thomson, Diane M","contributorId":288076,"corporation":false,"usgs":false,"family":"Thomson","given":"Diane","email":"","middleInitial":"M","affiliations":[{"id":61702,"text":"W.M. Keck Science Department, The Claremont Colleges, 925 N. Mills Avenue, Claremont, CA, 91711, USA","active":true,"usgs":false}],"preferred":false,"id":837326,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McEachern, Kathryn 0000-0003-2631-8247 kathryn_mceachern@usgs.gov","orcid":"https://orcid.org/0000-0003-2631-8247","contributorId":146324,"corporation":false,"usgs":true,"family":"McEachern","given":"Kathryn","email":"kathryn_mceachern@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":837327,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schultz, Emily L","contributorId":288077,"corporation":false,"usgs":false,"family":"Schultz","given":"Emily L","affiliations":[{"id":61702,"text":"W.M. Keck Science Department, The Claremont Colleges, 925 N. Mills Avenue, Claremont, CA, 91711, USA","active":true,"usgs":false}],"preferred":false,"id":837328,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Niessen, Kenneth G.","contributorId":215509,"corporation":false,"usgs":false,"family":"Niessen","given":"Kenneth","email":"","middleInitial":"G.","affiliations":[{"id":6661,"text":"US Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":837329,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Wilken, Dieter","contributorId":288078,"corporation":false,"usgs":false,"family":"Wilken","given":"Dieter","affiliations":[{"id":61704,"text":"Santa Barbara Botanic Garden, 1212 Mission Canyon Rd, Santa Barbara, CA, 93105, USA","active":true,"usgs":false}],"preferred":false,"id":837330,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Chess, Katherine A.","contributorId":215508,"corporation":false,"usgs":false,"family":"Chess","given":"Katherine","email":"","middleInitial":"A.","affiliations":[{"id":7134,"text":"USFS","active":true,"usgs":false}],"preferred":false,"id":837331,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Cole, Lauren F","contributorId":288079,"corporation":false,"usgs":false,"family":"Cole","given":"Lauren","email":"","middleInitial":"F","affiliations":[{"id":61702,"text":"W.M. Keck Science Department, The Claremont Colleges, 925 N. Mills Avenue, Claremont, CA, 91711, USA","active":true,"usgs":false}],"preferred":false,"id":837332,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Oliver, Ruth Y","contributorId":243448,"corporation":false,"usgs":false,"family":"Oliver","given":"Ruth","email":"","middleInitial":"Y","affiliations":[],"preferred":false,"id":837333,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Phillips, Jennifer D","contributorId":288080,"corporation":false,"usgs":false,"family":"Phillips","given":"Jennifer","email":"","middleInitial":"D","affiliations":[{"id":61702,"text":"W.M. Keck Science Department, The Claremont Colleges, 925 N. Mills Avenue, Claremont, CA, 91711, USA","active":true,"usgs":false}],"preferred":false,"id":837334,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Tucker, Acadia","contributorId":288081,"corporation":false,"usgs":false,"family":"Tucker","given":"Acadia","email":"","affiliations":[{"id":61702,"text":"W.M. Keck Science Department, The Claremont Colleges, 925 N. Mills Avenue, Claremont, CA, 91711, USA","active":true,"usgs":false}],"preferred":false,"id":837335,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70228383,"text":"ofr20221003 - 2022 - Annotated bibliography of scientific research on pygmy rabbits published from 1990 to 2020","interactions":[],"lastModifiedDate":"2022-02-11T12:04:51.904289","indexId":"ofr20221003","displayToPublicDate":"2022-02-10T15:10:00","publicationYear":"2022","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2022-1003","displayTitle":"Annotated Bibliography of Scientific Research on Pygmy Rabbits Published from 1990 to 2020","title":"Annotated bibliography of scientific research on pygmy rabbits published from 1990 to 2020","docAbstract":"<p>Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey (USGS) is creating a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate the integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here to frame the presentation. Sagebrush ecosystems throughout North America face management challenges including habitat loss and fragmentation. <i>Brachylagus idahoensis</i> (pygmy rabbits) are a sagebrush-obligate species that has experienced population declines and range contraction in recent decades. A disjunct population of pygmy rabbits in the Columbia Basin in Washington was listed as federally endangered in 2003. Due to their specialized habitat requirements and low dispersal ability, pygmy rabbits are a high priority for managers throughout their range. We compiled and summarized peer-reviewed journal articles, data products, and formal technical reports (such as U.S. Forest Service General Technical Reports and U.S. Geological Survey Open-File Reports) on pygmy rabbits published between January 1, 1990 and December 31, 2020. We first conducted a structured search of three reference databases and three government databases using the phrase “pygmy rabbit” or “<i>Brachylagus idahoensis</i>.” We refined the initial list of products by removing (1) duplicates, (2) products not written in English, (3) publications that were not focused on North America, (4) publications that were not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (5) products for which pygmy rabbits were not a research focus or for which the study did not present new data or findings about pygmy rabbits. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified the management topics (for example, captive breeding, habitat characteristics, and population estimates) addressed by each product. We also noted which publications included new publicly available geospatial data. The review process for this annotated bibliography included an initial internal colleague review of each summary, requesting input on each summary from an author of the original publication, and a formal peer review. Our initial searches resulted in 2,285 total products, of which 105 met our criteria for inclusion. Sensitive/rare wildlife, behavior or demographics, site-scale habitat characteristics, habitat selection, and effects distances or spatial scale were the management topics most commonly addressed. The online version of this bibliography, Science for Resource Managers, will be searchable by topic, location, and year; it will include links to each original publication, where available. The studies compiled and summarized here may inform planning and management actions that seek to maintain and restore sagebrush landscapes and associated native species across the western United States.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20221003","usgsCitation":"Kleist, N.J., Willems, J.S., Bencin, H.L., Foster, A.C., McCall, L.E., Meineke, J.K., Poor, E.E., and Carter, S.K., 2022, Annotated bibliography of scientific research on pygmy rabbits published from 1990 to 2020: U.S. Geological Survey Open-File Report 2022–1003, 75 p., https://doi.org/10.3133/ofr20221003.","productDescription":"viii, 75 p.","onlineOnly":"Y","ipdsId":"IP-127323","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":395704,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2022/1003/coverthb.jpg"},{"id":395705,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2022/1003/ofr20221003.pdf","text":"Report","size":"1.24 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2022-1003"}],"contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/fort/\" data-mce-href=\"https://www.usgs.gov/centers/fort/\">Fort Collins Science Center</a><br>U.S. Geological Survey<br>2150 Centre Ave., Bldg. C<br>Fort Collins, CO 80526-8118</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Methods</li><li>Results and Conclusions</li><li>References Cited</li></ul>","publishedDate":"2022-02-10","noUsgsAuthors":false,"publicationDate":"2022-02-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Kleist, Nathan J. 0000-0002-2468-4318","orcid":"https://orcid.org/0000-0002-2468-4318","contributorId":260598,"corporation":false,"usgs":true,"family":"Kleist","given":"Nathan","email":"","middleInitial":"J.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834066,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Willems, Joshua S. 0000-0002-4033-4182","orcid":"https://orcid.org/0000-0002-4033-4182","contributorId":275416,"corporation":false,"usgs":true,"family":"Willems","given":"Joshua","email":"","middleInitial":"S.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834067,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bencin, Heidi L. 0000-0002-0879-5392","orcid":"https://orcid.org/0000-0002-0879-5392","contributorId":222412,"corporation":false,"usgs":true,"family":"Bencin","given":"Heidi","email":"","middleInitial":"L.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834068,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Foster, Alison C. 0000-0002-6659-2120","orcid":"https://orcid.org/0000-0002-6659-2120","contributorId":260599,"corporation":false,"usgs":true,"family":"Foster","given":"Alison","email":"","middleInitial":"C.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834069,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"McCall, Laine E. 0000-0003-2624-8453","orcid":"https://orcid.org/0000-0003-2624-8453","contributorId":275417,"corporation":false,"usgs":true,"family":"McCall","given":"Laine","email":"","middleInitial":"E.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834070,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Meineke, Jennifer K. 0000-0002-7136-5854","orcid":"https://orcid.org/0000-0002-7136-5854","contributorId":275418,"corporation":false,"usgs":true,"family":"Meineke","given":"Jennifer","email":"","middleInitial":"K.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834071,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Poor, Erin E. 0000-0002-8799-3193","orcid":"https://orcid.org/0000-0002-8799-3193","contributorId":260597,"corporation":false,"usgs":false,"family":"Poor","given":"Erin","email":"","middleInitial":"E.","affiliations":[{"id":7083,"text":"University of Maryland","active":true,"usgs":false}],"preferred":false,"id":834072,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Carter, Sarah K. 0000-0003-3778-8615","orcid":"https://orcid.org/0000-0003-3778-8615","contributorId":192418,"corporation":false,"usgs":true,"family":"Carter","given":"Sarah","email":"","middleInitial":"K.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":834073,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70228450,"text":"fs20223004 - 2022 - Colorado and Landsat","interactions":[],"lastModifiedDate":"2023-01-21T15:53:55.313826","indexId":"fs20223004","displayToPublicDate":"2022-02-10T15:07:20","publicationYear":"2022","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2022-3004","displayTitle":"Colorado and Landsat","title":"Colorado and Landsat","docAbstract":"<p>Colorado’s geography seems designed to impress. Although the Rocky Mountains takes up only one-half of the State, more than 50 of its peaks rise at least 14,000 feet above sea level—far more “fourteeners” than any other State. Many of these mountains receive hundreds of inches of snow annually. The Rocky Mountains provide the Continental Divide, or watershed boundary, for North America. Three of the United States’ seven longest rivers originate in Colorado’s mountains: the Rio Grande, the Colorado, and the Arkansas Rivers. The mountains are also home to 11 national forests. Residents and tourists find many ways to appreciate the stunning views, from hiking and skiing to camping and birdwatching, in ecosystems that also include grasslands and shrublands.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20223004","usgsCitation":"U.S. Geological Survey, 2022, Colorado and Landsat (ver. 1.1, January 2023): U.S. Geological Survey Fact Sheet 2022–3004, 2 p., https://doi.org/10.3133/fs20223004.","productDescription":"2 p.","numberOfPages":"2","onlineOnly":"N","ipdsId":"IP-134595","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":411871,"rank":6,"type":{"id":39,"text":"HTML 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 \"}}]}","edition":"Version 1.0: February 10, 2022; Version 1.1: January 13, 2023","contact":"<p>Program Coordinator, <a href=\"https://www.usgs.gov/core-science-systems/national-land-imaging-program\" data-mce-href=\"https://www.usgs.gov/core-science-systems/national-land-imaging-program\">National Land Imaging Program</a> <br>U.S. Geological Survey <br>12201 Sunrise Valley Drive <br>Reston, VA 20192</p><p><a href=\"https://pubs.er.usgs.gov/contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Monitoring Water and Agriculture</li><li>Sustainable Forest and Ecosystem Management</li><li>Assessing Revegetation at Energy Sites</li><li>Landsat—Critical Information Infrastructure for the Nation</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla 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,{"id":70228216,"text":"ofr20211095 - 2022 - Report of the River Master of the Delaware River for the period December 1, 2011–November 30, 2012","interactions":[],"lastModifiedDate":"2026-03-25T17:40:42.809018","indexId":"ofr20211095","displayToPublicDate":"2022-02-10T12:45:00","publicationYear":"2022","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-1095","displayTitle":"Report of the River Master of the Delaware River for the Period December 1, 2011–November 30, 2012","title":"Report of the River Master of the Delaware River for the period December 1, 2011–November 30, 2012","docAbstract":"<p>A Decree of the Supreme Court of the United States, entered June 7, 1954, established the position of Delaware River Master within the U.S. Geological Survey. In addition, the Decree authorizes diversion of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York City, to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master will furnish reports to the Court, not less frequently than annually. This report is the 59th annual report of the River Master of the Delaware River. It covers the 2012 River Master report year, the period from December 1, 2011 to November 30, 2012.</p><p>During the report year, precipitation in the upper Delaware River Basin was 43.35 inches or 97 percent of the long-term average. Combined storage in the Pepacton, Cannonsville, and Neversink Reservoirs remained high through late May, declined from then until mid-September, decreasing below 80 percent of combined capacity in late August, increased in late October, and decreased slightly in November 2012. Delaware River Master operations during the year were conducted as stipulated by the Decree and the Flexible Flow Management Program.</p><p>Diversions from the Delaware River Basin by New York City and New Jersey were in full compliance with the Decree. Reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 52 days during the report year. Interim Excess Release Quantity and conservation releases, designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs, were also made during the report year. An agreement was signed on October 25, 2012, to increase discharge mitigation releases from the Neversink Reservoir due to potential impacts from Hurricane Sandy.</p><p>The quality of water in the Delaware River estuary between Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at various locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected continuously by electronic instruments at four sites.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20211095","usgsCitation":"DiFrenna, V.J., Andrews, W.J., Russell, K.L., Norris, J.M., and Mason, R.R., Jr., 2022, Report of the River Master of the Delaware River for the period December 1, 2011–November 30, 2012: U.S. Geological Survey Open-File Report 2021–1095, 101 p., https://doi.org/10.3133/ofr20211095.","productDescription":"x, 101 p.","numberOfPages":"101","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-123829","costCenters":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true},{"id":509,"text":"Office of the Associate Director for Water","active":true,"usgs":true},{"id":516,"text":"Oklahoma Water Science Center","active":true,"usgs":true}],"links":[{"id":395538,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2021/1095/coverthb.jpg"},{"id":395539,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2021/1095/ofr20211095.pdf","text":"Report","size":"4.69 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2021-1095"},{"id":501528,"rank":3,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_112444.htm","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"New Jersey, New York, Pennsylvania","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -76.66259765625,\n              39.67337039176558\n            ],\n            [\n              -73.65234375,\n              39.67337039176558\n            ],\n            [\n              -73.65234375,\n              42.52069952914966\n            ],\n            [\n              -76.66259765625,\n              42.52069952914966\n            ],\n            [\n              -76.66259765625,\n              39.67337039176558\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p>Delaware River Master<br><a href=\"https://webapps.usgs.gov/odrm/\" data-mce-href=\"https://webapps.usgs.gov/odrm/\">Office of the Delaware River Master</a><br>U.S. Geological Survey<br>120 Route 209 South<br>Milford, PA 18337</p><p><a href=\"../contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Abstract</li><li>Definitions of Terms and Procedures</li><li>Introduction</li><li>Method to Determine Directed Releases from New York City Reservoirs</li><li>Hydrologic Conditions</li><li>Operations</li><li>Comparison of River Master Operations Data with Other Records</li><li>Conformance of Operations Under the Amended Decree of the U.S. Supreme Court Entered June 7, 1954</li><li>Quality of Water in the Delaware River Estuary</li><li>References Cited</li><li>Appendix 1. Agreement of the Parties to the 1954 U.S. Supreme Court Decree, Effective June 1, 2012</li><li>Appendix 2. Temporary Thermal Release Program for Fishery Protection</li><li>Appendix 3. Temporary Modification to the Release Program for Discharge Mitigation Releases at the Neversink Reservoir due to Potential Impacts From Hurricane Sandy, Effective October 25, 2012</li></ul>","publishingServiceCenter":{"id":11,"text":"Pembroke PSC"},"publishedDate":"2022-02-10","noUsgsAuthors":false,"publicationDate":"2022-02-10","publicationStatus":"PW","contributors":{"authors":[{"text":"DiFrenna, Vincent J. 0000-0002-1336-7288","orcid":"https://orcid.org/0000-0002-1336-7288","contributorId":222850,"corporation":false,"usgs":true,"family":"DiFrenna","given":"Vincent J.","affiliations":[{"id":509,"text":"Office of the Associate Director for Water","active":true,"usgs":true}],"preferred":true,"id":833435,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Andrews, William J. 0000-0003-4780-8835 wandrews@usgs.gov","orcid":"https://orcid.org/0000-0003-4780-8835","contributorId":328,"corporation":false,"usgs":true,"family":"Andrews","given":"William","email":"wandrews@usgs.gov","middleInitial":"J.","affiliations":[{"id":516,"text":"Oklahoma Water Science Center","active":true,"usgs":true}],"preferred":true,"id":833436,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Russell, Kendra L. 0000-0002-3046-7440","orcid":"https://orcid.org/0000-0002-3046-7440","contributorId":218135,"corporation":false,"usgs":true,"family":"Russell","given":"Kendra","email":"","middleInitial":"L.","affiliations":[{"id":509,"text":"Office of the Associate Director for Water","active":true,"usgs":true}],"preferred":true,"id":833437,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Norris, J. Michael 0000-0002-7480-0161 mnorris@usgs.gov","orcid":"https://orcid.org/0000-0002-7480-0161","contributorId":1625,"corporation":false,"usgs":true,"family":"Norris","given":"J.","email":"mnorris@usgs.gov","middleInitial":"Michael","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"preferred":true,"id":833438,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Mason, Jr. 0000-0002-3998-3468 rrmason@usgs.gov","orcid":"https://orcid.org/0000-0002-3998-3468","contributorId":2090,"corporation":false,"usgs":true,"family":"Mason","suffix":"Jr.","email":"rrmason@usgs.gov","affiliations":[{"id":509,"text":"Office of the Associate Director for Water","active":true,"usgs":true}],"preferred":true,"id":833439,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70228449,"text":"sir20215118B - 2022 - Yucaipa valley integrated hydrological model","interactions":[{"subject":{"id":70228449,"text":"sir20215118B - 2022 - Yucaipa valley integrated hydrological model","indexId":"sir20215118B","publicationYear":"2022","noYear":false,"chapter":"B","displayTitle":"Yucaipa Valley Integrated Hydrological Model","title":"Yucaipa valley integrated hydrological model"},"predicate":"IS_PART_OF","object":{"id":70227651,"text":"sir20215118 - 2022 - Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California","indexId":"sir20215118","publicationYear":"2022","noYear":false,"title":"Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California"},"id":1}],"isPartOf":{"id":70227651,"text":"sir20215118 - 2022 - Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California","indexId":"sir20215118","publicationYear":"2022","noYear":false,"title":"Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California"},"lastModifiedDate":"2022-02-10T20:43:51.187857","indexId":"sir20215118B","displayToPublicDate":"2022-02-10T12:43:40","publicationYear":"2022","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-5118","chapter":"B","displayTitle":"Yucaipa Valley Integrated Hydrological Model","title":"Yucaipa valley integrated hydrological model","docAbstract":"<h1>Introduction</h1><p>The hydrologic system in the Yucaipa Valley watershed (YVW) was simulated using the coupled Groundwater and Surface-water FLOW model (GSFLOW; Markstrom and others, 2008). This study uses version 2.0 of GSFLOW, which is a combination of the Precipitation-Runoff Modeling System (PRMS; Markstrom and others, 2015), and the Newton-Raphson formulation of the Modular Groundwater-Flow Model (MODFLOW-NWT; hereafter referred to as MODFLOW; Harbaugh, 2005; Niswonger and others, 2011).</p><p>GSFLOW partitions the hydrologic system into three regions (fig. B1) that are linked by the exchange of unsaturated and saturated groundwater and surface water. The properties and processes within each region influence the flow of both groundwater and surface water into, out of, and within each region. The PRMS component of GSFLOW simulates Region 1, and the MODFLOW component simulates Regions 2 and 3. In the YVW, GSFLOW was applied as the simulation code and is referred to herein as the Yucaipa Integrated Hydrologic Model (YIHM; Alzraiee and others, 2022). In the YIHM, Region 1 includes the plant canopy, snowpack, and the soil zone; Region 2 includes the stream network; and Region 3 includes the subsurface beneath Regions 1 and 2 and consists of both the saturated and unsaturated zones. Soil-moisture conditions and head relations control the flow of both groundwater and surface water between regions. The maximum lateral extents of Regions 1 and 3 were defined using the surface-water drainage divides described in the “Description of Study Area” section of <a data-mce-href=\"https://doi.org/10.3133/sir20215118A\" href=\"https://doi.org/10.3133/sir20215118A\" target=\"_blank\" rel=\"noopener\" title=\"SIR 2021-5118 Chapter A: Hydrogeologic Characterization of the Yucaipa Groundwater Subbasin\">chapter A</a> of this report. The boundaries for Region 2 are the lowest elevation of the streambeds, the stream channel widths, and the horizontal extent of the stream channels in the YVW. Flow across the unsaturated part of Region 3 is assumed to be vertical and does not cross the lateral boundary.</p><p>To simulate hydrologic processes occurring within the YVW using GSFLOW, a model domain was defined to match the surface watershed such that the domain includes each surficial hydrologic unit coinciding (at least partially) with the Yucaipa groundwater subbasin (hereafter referred to as “Yucaipa subbasin”) as defined in California Bulletin 118 (California Department of Water Resources, 2016). The resulting simulated domain (fig. B2) includes the Yucaipa subbasin and intersects partially with parts of the San Bernardino and San Timoteo groundwater subbasins (fig. B2). The area of the active model domain in YIHM is about 121 square miles (mi2). The developed YIHM can be used to improve understanding of the hydrologic processes in YVW and to simulate future management scenarios with different climatic and anthropogenic changes.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20215118B","collaboration":"Prepared in cooperation with San Bernardino Valley Municipal Water District","usgsCitation":"Alzraiee, A.H., Engott, J.A., Cromwell, G., and Woolfenden, L., 2022, Yucaipa valley integrated hydrological model, chap. B <i>in</i> Cromwell, G., and Alzraiee, A.H., eds., Hydrology of the Yucaipa groundwater subbasin—Characterization and integrated numerical model, San Bernardino and Riverside Counties, California: U.S. Geological Survey Scientific Investigations Report 2021–5118-B, 76 p., https://doi.org/10.3133/sir20215118B.","productDescription":"Report: ix, 76 p., and data release","numberOfPages":"76","onlineOnly":"Y","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":395797,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2021/5118/sir20215118b.pdf","text":"Report","size":"15 MB","linkFileType":{"id":1,"text":"pdf"}},{"id":395800,"rank":5,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/sir20215118A","text":"SIR 2021-5118 Chapter A","linkHelpText":"- Hydrogeologic Characterization of the Yucaipa Groundwater Subbasin"},{"id":395798,"rank":3,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2021/5118/sir20215118b.xml"},{"id":395799,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2021/5118/images"},{"id":395795,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2021/5118/covrthbb.jpg"},{"id":395809,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9K540DV","description":"Alzraiee, A.H., Engott, J.A., Cromwell, G., and Woolfenden, L., 2022, Yucaipa valley integrated hydrological model,  chap. B in Cromwell, G., and Alzraiee, A.H., eds., Hydrology of the Yucaipa groundwater subbasin—Characterization  and integrated numerical model, San Bernardino and Riverside Counties, California: U.S. Geological Survey Scientific  Investigations Report 2021–5118-B, 76 p., https://doi.org/10.3133/sir20215118B."}],"contact":"<p><a href=\"mailto:dc_ca@usgs.gov\" data-mce-href=\"mailto:dc_ca@usgs.gov\">Director</a>,<br><a href=\"https://ca.water.usgs.gov\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://ca.water.usgs.gov\">California Water Science Center</a><br><a href=\"https://usgs.gov\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://usgs.gov\">U.S. Geological Survey</a><br>6000 J Street, Placer Hall<br>Sacramento, California 95819</p>","tableOfContents":"<ul><li>Acknowledgments&nbsp;&nbsp;</li><li>Introduction&nbsp;&nbsp;</li><li>Model Discretization&nbsp;&nbsp;</li><li>Initial Conditions&nbsp;&nbsp;</li><li>Precipitation-Runoff Modeling System Model Description&nbsp;&nbsp;</li><li>MODFLOW Model Description&nbsp;&nbsp;</li><li>Integration of Precipitation-Runoff Modeling System and MODFLOW&nbsp;&nbsp;</li><li>Integrated Model Calibration&nbsp;&nbsp;</li><li>Calibration Results&nbsp;&nbsp;</li><li>Simulated Hydrologic Budget&nbsp;&nbsp;</li><li>Model Limitations&nbsp;&nbsp;</li><li>Summary and Conclusions&nbsp;&nbsp;</li><li>References Cited&nbsp;&nbsp;</li><li>Appendix B1. Calibration Using Ensemble Smoother&nbsp;&nbsp;</li><li>Appendix B2. Evaluation of Streamflow Data Quality and Calibration Goodness-of-Fit</li></ul>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2022-02-10","noUsgsAuthors":false,"publicationDate":"2022-02-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Alzraiee, Ayman H. 0000-0001-7576-3449","orcid":"https://orcid.org/0000-0001-7576-3449","contributorId":272120,"corporation":false,"usgs":true,"family":"Alzraiee","given":"Ayman","email":"","middleInitial":"H.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834325,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Engott, John A. 0000-0003-1889-4519 jaengott@usgs.gov","orcid":"https://orcid.org/0000-0003-1889-4519","contributorId":1142,"corporation":false,"usgs":true,"family":"Engott","given":"John","email":"jaengott@usgs.gov","middleInitial":"A.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true},{"id":525,"text":"Pacific Islands Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834326,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cromwell, Geoffrey 0000-0001-8481-405X gcromwell@usgs.gov","orcid":"https://orcid.org/0000-0001-8481-405X","contributorId":5920,"corporation":false,"usgs":true,"family":"Cromwell","given":"Geoffrey","email":"gcromwell@usgs.gov","affiliations":[{"id":128,"text":"Arizona Water Science Center","active":true,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834327,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Woolfenden, Linda R. 0000-0003-3500-4709 lrwoolfe@usgs.gov","orcid":"https://orcid.org/0000-0003-3500-4709","contributorId":1476,"corporation":false,"usgs":true,"family":"Woolfenden","given":"Linda","email":"lrwoolfe@usgs.gov","middleInitial":"R.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834328,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70230021,"text":"70230021 - 2022 - Performance of a carbon dioxide injection system at a navigation lock to control the spread of aquatic invasive species","interactions":[],"lastModifiedDate":"2022-03-25T13:34:34.841291","indexId":"70230021","displayToPublicDate":"2022-02-10T11:34:00","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2255,"text":"Journal of Environmental Engineering","active":true,"publicationSubtype":{"id":10}},"title":"Performance of a carbon dioxide injection system at a navigation lock to control the spread of aquatic invasive species","docAbstract":"<div class=\"NLM_sec NLM_sec_level_1 hlFld-Abstract\"><p>Natural resource agencies need effective strategies to control the spread of aquatic invasive species (AIS) such as invasive fish, which can expand their range using rivers as hydrological pathways to access new areas. Lock and dam structures within major rivers are prospective locations to deploy techniques, such as carbon dioxide (<span class=\"equationTd\">CO<sub>2</sub></span>) infusion into lock water, that could impede upstream AIS migration without disrupting vessel passage and lock operation. The current pesticide label for<span>&nbsp;</span><span class=\"equationTd\">CO<sub>2</sub></span><span>&nbsp;</span>in the United States allows injections of<span>&nbsp;</span><span class=\"equationTd\">100–150  mg/LCO<sub>2</sub></span><span>&nbsp;</span>as a behavioral deterrent treatment for invasive carps. This research describes the first operationalizing and testing of a<span>&nbsp;</span><span class=\"equationTd\">CO<sub>2</sub></span><span>&nbsp;</span>injection and manifold distribution system at a 1,548,000-L navigation lock chamber on the Fox River near Kaukauna, Wisconsin, USA. Two chemical distribution manifolds located on the floor and wall of the chamber were independently tested to quantify mixing time, mixing homogeneity, injection efficiency, and operational power requirements under a range of operating parameters. Both manifold configurations were able to meet most performance benchmarks established during previous fish behavior studies. Certain limitations were exhibited and quantified for both manifold configurations in terms of mixing homogeneity and operational power. This research details the design and performance of<span>&nbsp;</span><span class=\"equationTd\">CO2-to-water</span><span>&nbsp;</span>infusion systems that could be used to deter the spread of AIS at navigation pinch-points. These results may inform future<span>&nbsp;</span><span class=\"equationTd\">CO<sub>2</sub></span><span>&nbsp;</span>system designs and operating conditions to support natural resource management plans to limit the spread of AIS.</p></div>","language":"English","publisher":"American Society of Civil Engineers","doi":"10.1061/(ASCE)EE.1943-7870.0001987","usgsCitation":"Zolper, T.J., Smith, D., Jackson, P.R., and Cupp, A.R., 2022, Performance of a carbon dioxide injection system at a navigation lock to control the spread of aquatic invasive species: Journal of Environmental Engineering, v. 148, no. 4, 04022011, 18 p., https://doi.org/10.1061/(ASCE)EE.1943-7870.0001987.","productDescription":"04022011, 18 p.","ipdsId":"IP-127265","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":448830,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1061/(asce)ee.1943-7870.0001987","text":"Publisher Index Page"},{"id":397532,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wisconsin","city":"Kaukauna","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -88.25804471969604,\n              44.282831594282946\n            ],\n            [\n              -88.25237989425659,\n              44.282831594282946\n            ],\n            [\n              -88.25237989425659,\n              44.284690317258665\n            ],\n            [\n              -88.25804471969604,\n              44.284690317258665\n            ],\n            [\n              -88.25804471969604,\n              44.282831594282946\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"148","issue":"4","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Zolper, Thomas J.","contributorId":210258,"corporation":false,"usgs":false,"family":"Zolper","given":"Thomas","email":"","middleInitial":"J.","affiliations":[{"id":38093,"text":"University of Wisconsin - Platteville","active":true,"usgs":false}],"preferred":false,"id":838708,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Smith, David 0000-0001-6074-9257","orcid":"https://orcid.org/0000-0001-6074-9257","contributorId":1989,"corporation":false,"usgs":false,"family":"Smith","given":"David","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":false,"id":838709,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Jackson, P. Ryan 0000-0002-3154-6108 pjackson@usgs.gov","orcid":"https://orcid.org/0000-0002-3154-6108","contributorId":194529,"corporation":false,"usgs":true,"family":"Jackson","given":"P.","email":"pjackson@usgs.gov","middleInitial":"Ryan","affiliations":[{"id":36532,"text":"Central Midwest Water Science Center","active":true,"usgs":true},{"id":344,"text":"Illinois Water Science Center","active":true,"usgs":true},{"id":35680,"text":"Illinois-Iowa-Missouri Water Science Center","active":true,"usgs":true}],"preferred":true,"id":838710,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Cupp, Aaron R. 0000-0001-5995-2100 acupp@usgs.gov","orcid":"https://orcid.org/0000-0001-5995-2100","contributorId":5162,"corporation":false,"usgs":true,"family":"Cupp","given":"Aaron","email":"acupp@usgs.gov","middleInitial":"R.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":838711,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70228448,"text":"sir20215118A - 2022 - Hydrogeologic characterization of the Yucaipa groundwater subbasin","interactions":[{"subject":{"id":70228448,"text":"sir20215118A - 2022 - Hydrogeologic characterization of the Yucaipa groundwater subbasin","indexId":"sir20215118A","publicationYear":"2022","noYear":false,"chapter":"A","displayTitle":"Hydrogeologic Characterization of the Yucaipa  Groundwater Subbasin","title":"Hydrogeologic characterization of the Yucaipa groundwater subbasin"},"predicate":"IS_PART_OF","object":{"id":70227651,"text":"sir20215118 - 2022 - Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California","indexId":"sir20215118","publicationYear":"2022","noYear":false,"title":"Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California"},"id":1}],"isPartOf":{"id":70227651,"text":"sir20215118 - 2022 - Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California","indexId":"sir20215118","publicationYear":"2022","noYear":false,"title":"Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California"},"lastModifiedDate":"2022-02-11T16:50:35.030326","indexId":"sir20215118A","displayToPublicDate":"2022-02-10T10:29:06","publicationYear":"2022","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2021-5118","chapter":"A","displayTitle":"Hydrogeologic Characterization of the Yucaipa  Groundwater Subbasin","title":"Hydrogeologic characterization of the Yucaipa groundwater subbasin","docAbstract":"<h1>Introduction</h1><p>Water management in the Santa Ana River watershed in San Bernardino and Riverside Counties in southern California (fig. A1) is complex with various water purveyors navigating geographic, geologic, hydrologic, and political challenges to provide a reliable water supply to stakeholders. As the population has increased throughout southern California, so has the demand for water. The Yucaipa groundwater subbasin (hereafter referred to as “Yucaipa subbasin”), one of nine groundwater subbasins in what the California Department of Water Resources (DWR) refers to as the Upper Santa Ana Valley groundwater basin (California Department of Water Resources, 2016; fig. A1; the DWR naming convention is used within this report), is no exception; steady population growth since the 1940s and changes in water use have forced local water purveyors to regularly adapt their water infrastructure. Water demands within the Yucaipa subbasin have historically been supplied by groundwater, but water imported via the California State Water Project has augmented the total water supply through direct use and through anthropogenic recharge at the Wilson Creek and Oak Glen Creek spreading basins since 2002. Overall demand for groundwater continues to rise, and local water managers are concerned that despite the influx of imported water, groundwater levels may decline to a point where producing water will be uneconomical, severely limiting the ability of local agencies to meet water-supply demand.</p><p>To better understand the hydrogeology and water resources in the Yucaipa subbasin, the U.S. Geological Survey (USGS) initiated a study in cooperation with the San Bernardino Valley Municipal Water District (SBVMWD) to characterize and model the hydrologic system of the Yucaipa subbasin and the surrounding Yucaipa Valley watershed (YVW; fig. A2). To gain this comprehensive understanding, a three-dimensional (3D) hydrogeologic framework model (HFM; Cromwell and Matti, 2022) was constructed to quantify the structure and extent of hydrogeologic units in the YVW; the hydrologic system was conceptualized and quantified (described in chapter A); and the Yucaipa Integrated Hydrological Model (YIHM; described in <a data-mce-href=\"https://doi.org/10.3133/sir20215118B\" href=\"https://doi.org/10.3133/sir20215118B\" target=\"_blank\" rel=\"noopener\" title=\"SIR 2021-5111 Chapter B: Yucaipa valley integrated hydrological model\">chapter B</a>) was developed to simulate the integrated surface-water and aquifer systems, including natural and anthropogenic recharge and discharge throughout the study area during 1947–2014.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20215118A","collaboration":"Prepared in cooperation with San Bernardino Valley Municipal Water District","usgsCitation":"Cromwell, G., Engott, J.A., Alzraiee, A.H., Stamos, C.L., Mendez, G.O., Dick, M.C., and Bond, S., 2022, Hydrogeologic characterization of the Yucaipa groundwater subbasin, chap. A <i>in</i> Cromwell, G., and Alzraiee, A.H., eds., Hydrology of the Yucaipa groundwater subbasin—Characterization and integrated numerical model, San Bernardino and Riverside Counties, California: U.S. Geological Survey Scientific Investigations Report 2021–5118–A, 81 p., https://doi.org/10.3133/sir20215118A.","productDescription":"Report: vii, 81 p., and data release","numberOfPages":"81","onlineOnly":"Y","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":395793,"rank":5,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9F7OYQR","description":"Cromwell, G., Matti, J.C., and Roberts, S.A., 2022, Data release of hydrogeologic data of the Yucaipa groundwater subbasin, San Bernardino and Riverside Counties, California: U.S. Geological Survey Sciencebase data release, https://doi.org/ 10.5066/ P9F7OYQR.","linkHelpText":"Data release of hydrogeologic data of the Yucaipa groundwater subbasin, San Bernardino and Riverside Counties, California"},{"id":395789,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2021/5118/covrthba.jpg"},{"id":395790,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2021/5118/sir20215118a.pdf","text":"Report","size":"60 MB","linkFileType":{"id":1,"text":"pdf"}},{"id":395791,"rank":3,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2021/5118/sir20215118a.xml"},{"id":395792,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2021/5118/images"},{"id":395794,"rank":6,"type":{"id":22,"text":"Related Work"},"url":"https://doi.org/10.3133/sir20215118B","text":"SIR 2021-5118 Chapter B","linkHelpText":"- Yucaipa valley integrated hydrological model"}],"contact":"<p><a href=\"mailto:dc_ca@usgs.gov\" data-mce-href=\"mailto:dc_ca@usgs.gov\">Director</a>,<br><a href=\"https://ca.water.usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://ca.water.usgs.gov\">California Water Science Center</a><br><a href=\"https://usgs.gov/\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://usgs.gov\">U.S. Geological Survey</a><br>6000 J Street, Placer Hall<br>Sacramento, California 95819</p>","tableOfContents":"<div id=\":1ck\" class=\"Ar Au Ao\"><div id=\":1cg\" class=\"Am Al editable LW-avf tS-tW tS-tY\" role=\"textbox\" contenteditable=\"true\" spellcheck=\"false\" aria-label=\"Message Body\" aria-multiline=\"true\" aria-owns=\":1fb\" aria-controls=\":1fb\" data-mce-tabindex=\"1\"><ul><li>Introduction&nbsp;</li><li>Hydrogeology&nbsp;</li><li>Water Budget&nbsp;</li><li>Groundwater Levels, Flow, and Movement&nbsp;</li><li>Hydrologic Flow Barriers&nbsp;</li><li>Water Chemistry&nbsp;</li><li>Summary&nbsp;</li><li>References Cited&nbsp;</li><li>Appendix A1. Tables</li></ul></div></div>","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"publishedDate":"2022-02-10","noUsgsAuthors":false,"publicationDate":"2022-02-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Cromwell, Geoffrey 0000-0001-8481-405X gcromwell@usgs.gov","orcid":"https://orcid.org/0000-0001-8481-405X","contributorId":5920,"corporation":false,"usgs":true,"family":"Cromwell","given":"Geoffrey","email":"gcromwell@usgs.gov","affiliations":[{"id":128,"text":"Arizona Water Science Center","active":true,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834318,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Engott, John A. 0000-0003-1889-4519 jaengott@usgs.gov","orcid":"https://orcid.org/0000-0003-1889-4519","contributorId":1142,"corporation":false,"usgs":true,"family":"Engott","given":"John","email":"jaengott@usgs.gov","middleInitial":"A.","affiliations":[{"id":525,"text":"Pacific Islands Water Science Center","active":true,"usgs":true},{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834319,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Alzraiee, Ayman H. 0000-0001-7576-3449","orcid":"https://orcid.org/0000-0001-7576-3449","contributorId":272120,"corporation":false,"usgs":true,"family":"Alzraiee","given":"Ayman","email":"","middleInitial":"H.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834320,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stamos-Pfeiffer, Christina 0000-0002-1007-9352 clstamos@usgs.gov","orcid":"https://orcid.org/0000-0002-1007-9352","contributorId":169089,"corporation":false,"usgs":true,"family":"Stamos-Pfeiffer","given":"Christina","email":"clstamos@usgs.gov","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834321,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Mendez, Gregory 0000-0002-9955-3726 gomendez@usgs.gov","orcid":"https://orcid.org/0000-0002-9955-3726","contributorId":139098,"corporation":false,"usgs":true,"family":"Mendez","given":"Gregory","email":"gomendez@usgs.gov","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834322,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Dick, Meghan C. 0000-0002-8323-3787 mdick@usgs.gov","orcid":"https://orcid.org/0000-0002-8323-3787","contributorId":200745,"corporation":false,"usgs":true,"family":"Dick","given":"Meghan","email":"mdick@usgs.gov","middleInitial":"C.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834323,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Bond, Sandra 0000-0003-0522-5287 sbond@usgs.gov","orcid":"https://orcid.org/0000-0003-0522-5287","contributorId":3328,"corporation":false,"usgs":true,"family":"Bond","given":"Sandra","email":"sbond@usgs.gov","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":834324,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70228677,"text":"70228677 - 2022 - In situ enhancement and isotopic labeling of biogenic coalbed methane","interactions":[],"lastModifiedDate":"2022-03-17T16:57:12.26312","indexId":"70228677","displayToPublicDate":"2022-02-10T09:40:42","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5925,"text":"Environmental Science and Technology","active":true,"publicationSubtype":{"id":10}},"title":"In situ enhancement and isotopic labeling of biogenic coalbed methane","docAbstract":"<p><span>Subsurface microbial (biogenic) methane production is an important part of the global carbon cycle that has resulted in natural gas accumulations in many coal beds worldwide. Laboratory studies suggest that complex carbon-containing nutrients (e.g., yeast or algae extract) can stimulate methane production, yet the effectiveness of these nutrients within coal beds is unknown. Here, we use downhole monitoring methods in combination with deuterated water (D</span><sub>2</sub><span>O) and a 200-liter injection of 0.1% yeast extract (YE) to stimulate and isotopically label newly generated methane. A total dissolved gas pressure sensor enabled real-time gas measurements (641 days preinjection and for 478 days postinjection). Downhole samples, collected with subsurface environmental samplers, indicate that methane increased 132% above preinjection levels based on isotopic labeling from D</span><sub>2</sub><span>O, 108% based on pressure readings, and 183% based on methane measurements 266 days postinjection. Demonstrating that YE enhances biogenic coalbed methane production in situ using multiple novel measurement methods has immediate implications for other field-scale biogenic methane investigations, including in situ methods to detect and track microbial activities related to the methanogenic turnover of recalcitrant carbon in the subsurface.</span></p>","language":"English","publisher":"ACS Publications","doi":"10.1021/acs.est.1c05979","usgsCitation":"Barnhart, E.P., Ruppert, L., Heibert, R., Smith, H.J., Schweitzer, H., Clark, A., Weeks, E., Orem, W.H., Varonka, M., Platt, G.A., Shelton, J., Davis, K., Hyatt, R., McIntosh, J.C., Ashley, K., Ono, S., Martini, A.M., Hackley, K., Gerlach, R., Spangler, L., Phillips, A., Barry, M., Cunningham, A.B., and Fields, M.W., 2022, In situ enhancement and isotopic labeling of biogenic coalbed methane: Environmental Science and Technology, v. 56, no. 5, p. 3225-3233, https://doi.org/10.1021/acs.est.1c05979.","productDescription":"9 p.","startPage":"3225","endPage":"3233","ipdsId":"IP-135929","costCenters":[{"id":5050,"text":"WY-MT Water Science Center","active":true,"usgs":true}],"links":[{"id":448833,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1021/acs.est.1c05979","text":"Publisher Index Page"},{"id":396017,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Montana","county":"Rosebud County","otherGeospatial":"Flowers-Goodale coal bed at the Birney Test Site","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -106.72393798828125,\n              45.10066901851988\n            ],\n            [\n              -106.37237548828125,\n              45.10066901851988\n         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0000-0002-7453-1061","orcid":"https://orcid.org/0000-0002-7453-1061","contributorId":242600,"corporation":false,"usgs":true,"family":"Ruppert","given":"Leslie F.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":834982,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Heibert, Randy","contributorId":218405,"corporation":false,"usgs":false,"family":"Heibert","given":"Randy","email":"","affiliations":[{"id":39839,"text":"Montana Emergent Technologies","active":true,"usgs":false}],"preferred":false,"id":834983,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Smith, Heidi J.","contributorId":268344,"corporation":false,"usgs":false,"family":"Smith","given":"Heidi","email":"","middleInitial":"J.","affiliations":[{"id":36555,"text":"Montana State University","active":true,"usgs":false}],"preferred":false,"id":834984,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Schweitzer, 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MT","active":true,"usgs":false}],"preferred":false,"id":835000,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Phillips, Adrienne","contributorId":279496,"corporation":false,"usgs":false,"family":"Phillips","given":"Adrienne","email":"","affiliations":[{"id":41008,"text":"Montana State University, Bozeman, MT","active":true,"usgs":false}],"preferred":false,"id":835001,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Barry, Mark","contributorId":279497,"corporation":false,"usgs":false,"family":"Barry","given":"Mark","email":"","affiliations":[{"id":57260,"text":"Pro-Oceanus, Bridgewater, Nova Scotia","active":true,"usgs":false}],"preferred":false,"id":835002,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"Cunningham, Alfred B.","contributorId":172389,"corporation":false,"usgs":false,"family":"Cunningham","given":"Alfred","email":"","middleInitial":"B.","affiliations":[],"preferred":false,"id":835003,"contributorType":{"id":1,"text":"Authors"},"rank":23},{"text":"Fields, Matthew W.","contributorId":172391,"corporation":false,"usgs":false,"family":"Fields","given":"Matthew","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":835004,"contributorType":{"id":1,"text":"Authors"},"rank":24}]}}
,{"id":70228682,"text":"70228682 - 2022 - Optimizing trilateration estimates for tracking fine-scale movement of wildlife using automated radio telemetry networks","interactions":[],"lastModifiedDate":"2022-02-16T15:18:50.20089","indexId":"70228682","displayToPublicDate":"2022-02-10T09:10:25","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Optimizing trilateration estimates for tracking fine-scale movement of wildlife using automated radio telemetry networks","docAbstract":"<p><span>A major advancement in the use of radio telemetry has been the development of automated radio tracking systems (ARTS), which allow animal movements to be tracked continuously. A new ARTS approach is the use of a network of simple radio receivers (nodes) that collect radio signal strength (RSS) values from animal-borne radio transmitters. However, the use of RSS-based localization methods in wildlife tracking research is new, and analytical approaches critical for determining high-quality location data have lagged behind technological developments. We present an analytical approach to optimize RSS-based localization estimates for a node network designed to track fine-scale animal movements in a localized area. Specifically, we test the application of analytical filters (signal strength, distance among nodes) to data from real and simulated node networks that differ in the density and configuration of nodes. We evaluate how different filters and network configurations (density and regularity of node spacing) may influence the accuracy of RSS-based localization estimates. Overall, the use of signal strength and distance-based filters resulted in a 3- to 9-fold increase in median accuracy of location estimates over unfiltered estimates, with the most stringent filters providing location estimates with a median accuracy ranging from 28 to 73&nbsp;m depending on the configuration and spacing of the node network. We found that distance filters performed significantly better than RSS filters for networks with evenly spaced nodes, but the advantage diminished when nodes were less uniformly spaced within a network. Our results not only provide analytical approaches to greatly increase the accuracy of RSS-based localization estimates, as well as the computer code to do so, but also provide guidance on how to best configure node networks to maximize the accuracy and capabilities of such systems for wildlife tracking studies.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/ece3.8561","usgsCitation":"Paxton, K.L., Baker, K.M., Crytser, Z., Guinto, R.M., Brinck, K., Rogers, H., and Paxton, E.H., 2022, Optimizing trilateration estimates for tracking fine-scale movement of wildlife using automated radio telemetry networks: Ecology and Evolution, v. 12, no. 2, e8561, 12 p., https://doi.org/10.1002/ece3.8561.","productDescription":"e8561, 12 p.","ipdsId":"IP-133962","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":448836,"rank":1,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1002/ece3.8561","text":"External Repository"},{"id":435973,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P94LQWIE","text":"USGS data release","linkHelpText":"Guam automated radio telemetry network test data 2021"},{"id":396012,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Guam","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              144.83379364013672,\n              13.54721129739022\n            ],\n            [\n              144.95773315429685,\n              13.54721129739022\n            ],\n            [\n              144.95773315429685,\n              13.660666140853907\n            ],\n            [\n              144.83379364013672,\n              13.660666140853907\n            ],\n            [\n              144.83379364013672,\n              13.54721129739022\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"12","issue":"2","noUsgsAuthors":false,"publicationDate":"2022-02-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Paxton, Kristina L. 0000-0003-2321-5090","orcid":"https://orcid.org/0000-0003-2321-5090","contributorId":41917,"corporation":false,"usgs":false,"family":"Paxton","given":"Kristina","email":"","middleInitial":"L.","affiliations":[{"id":12981,"text":"Department of Biological Sciences, University of Southern Mississippi","active":true,"usgs":false},{"id":6977,"text":"University of Hawai`i at Hilo","active":true,"usgs":false}],"preferred":false,"id":835023,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Baker, Kayla M","contributorId":279515,"corporation":false,"usgs":false,"family":"Baker","given":"Kayla","email":"","middleInitial":"M","affiliations":[],"preferred":false,"id":835030,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Crytser, Zia","contributorId":279506,"corporation":false,"usgs":false,"family":"Crytser","given":"Zia","email":"","affiliations":[{"id":6911,"text":"Iowa State University","active":true,"usgs":false}],"preferred":false,"id":835025,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Guinto, Ray Mark Provido 0000-0001-5481-9781","orcid":"https://orcid.org/0000-0001-5481-9781","contributorId":279507,"corporation":false,"usgs":true,"family":"Guinto","given":"Ray","email":"","middleInitial":"Mark Provido","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"preferred":true,"id":835026,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Brinck, Kevin W. 0000-0001-7581-2482 kbrinck@usgs.gov","orcid":"https://orcid.org/0000-0001-7581-2482","contributorId":3847,"corporation":false,"usgs":true,"family":"Brinck","given":"Kevin W.","email":"kbrinck@usgs.gov","affiliations":[],"preferred":false,"id":835027,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Rogers, Haldre","contributorId":279510,"corporation":false,"usgs":false,"family":"Rogers","given":"Haldre","email":"","affiliations":[{"id":6911,"text":"Iowa State University","active":true,"usgs":false}],"preferred":false,"id":835028,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Paxton, Eben H. 0000-0001-5578-7689","orcid":"https://orcid.org/0000-0001-5578-7689","contributorId":19640,"corporation":false,"usgs":true,"family":"Paxton","given":"Eben","email":"","middleInitial":"H.","affiliations":[{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":true,"id":835029,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70256733,"text":"70256733 - 2022 - Seed treatments containing neonicotinoids and fungicides reduce aquatic insect richness and abundance in midwestern USA–managed floodplain wetlands","interactions":[],"lastModifiedDate":"2024-09-04T13:50:54.981462","indexId":"70256733","displayToPublicDate":"2022-02-10T08:32:47","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1564,"text":"Environmental Science and Pollution Research","active":true,"publicationSubtype":{"id":10}},"title":"Seed treatments containing neonicotinoids and fungicides reduce aquatic insect richness and abundance in midwestern USA–managed floodplain wetlands","docAbstract":"<p><span>Agrochemicals including neonicotinoid insecticides and fungicides are frequently applied as seed treatments on corn, soybeans, and other common row crops. Crops grown from pesticide-treated seed are often directly planted in managed floodplain wetlands and used as a soil disturbance or food resource for wildlife. We quantified invertebrate communities within mid-latitude floodplain wetlands and assessed their response to use of pesticide-treated seeds within the floodplain. We collected and tested aqueous and sediment samples for pesticides in addition to sampling aquatic invertebrates from 22 paired wetlands. Samples were collected twice in 2016 (spring [pre-water level drawdown] and autumn [post-water level flood-up]) followed by a third sampling period (spring 2017). Meanwhile, during the summer of 2016, a portion of study wetlands were planted with either pesticide-treated or untreated corn seed. Neonicotinoid toxic equivalencies (NI-EQs) for sediment (</span><i>X̅</i><span> = 0.58&nbsp;μg/kg), water (</span><i>X̅</i><span> = 0.02&nbsp;μg/L), and sediment fungicide concentrations (</span><i>X̅</i><span> = 0.10&nbsp;μg/kg) were used to assess potential effects on wetland invertebrates. An overall decrease in aquatic insect richness and abundance was associated with greater NI-EQs in wetland water and sediments, as well as with sediment fungicide concentration. Post-treatment, treated wetlands displayed a decrease in insect taxa-richness and abundance before recovering by the spring of 2017. Information on timing and magnitude of aquatic insect declines will be useful when considering the use of seed treatments for wildlife management. More broadly, this study brings attention to how agriculture is used in wetland management and conservation planning.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s11356-022-18991-9","usgsCitation":"Kuechle, K., Webb, E.B., Mengel, D., and Main, A., 2022, Seed treatments containing neonicotinoids and fungicides reduce aquatic insect richness and abundance in midwestern USA–managed floodplain wetlands: Environmental Science and Pollution Research, v. 29, p. 45261-45275, https://doi.org/10.1007/s11356-022-18991-9.","productDescription":"15 p.","startPage":"45261","endPage":"45275","ipdsId":"IP-117132","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":433441,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United 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 \"}}]}","volume":"29","noUsgsAuthors":false,"publicationDate":"2022-02-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Kuechle, K.J.","contributorId":270317,"corporation":false,"usgs":false,"family":"Kuechle","given":"K.J.","email":"","affiliations":[{"id":6754,"text":"University of Missouri","active":true,"usgs":false}],"preferred":false,"id":908817,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Webb, Elisabeth B. 0000-0003-3851-6056 ewebb@usgs.gov","orcid":"https://orcid.org/0000-0003-3851-6056","contributorId":3981,"corporation":false,"usgs":true,"family":"Webb","given":"Elisabeth","email":"ewebb@usgs.gov","middleInitial":"B.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":908818,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mengel, D.","contributorId":244519,"corporation":false,"usgs":false,"family":"Mengel","given":"D.","email":"","affiliations":[{"id":16971,"text":"Missouri Department of Conservation","active":true,"usgs":false}],"preferred":false,"id":908819,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Main, A.R.","contributorId":244517,"corporation":false,"usgs":false,"family":"Main","given":"A.R.","email":"","affiliations":[{"id":6754,"text":"University of Missouri","active":true,"usgs":false}],"preferred":false,"id":908820,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70228746,"text":"70228746 - 2022 - A novel approach for directly incorporating disease into fish stock assessment: A case study with seroprevalence data","interactions":[],"lastModifiedDate":"2022-03-28T16:49:12.186131","indexId":"70228746","displayToPublicDate":"2022-02-10T06:49:31","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1169,"text":"Canadian Journal of Fisheries and Aquatic Sciences","active":true,"publicationSubtype":{"id":10}},"title":"A novel approach for directly incorporating disease into fish stock assessment: A case study with seroprevalence data","docAbstract":"<div>When estimating mortality from disease with fish population models, common disease surveillance data such as infection prevalence are not always informative, especially for fast-acting diseases that may go unobserved in infrequently sampled populations. In these cases, seroprevalence&nbsp;— the proportion of fish with measurable antibody levels in their blood&nbsp;— may be more informative. In cases of life-long immunity, seroprevalence data require less frequent sampling intervals than infection prevalence data and can reflect the cumulative exposure history of fish. We simulation tested the usefulness of seroprevalence data in an age-structured fish stock assessment model using viral hemorrhagic septicemia virus (VHSV) in Pacific herring (<i>Clupea pallasii</i>) as a case study. We developed a novel epidemiological model to simulate population dynamics and seroprevalence data and fitted to these data in an integrated catch-at-age model with equations that estimate age- and time-varying mortality from disease. We found that simulated seroprevalence data can provide accurate estimates of infection history and disease-associated mortality. Importantly, even models that misspecified nonstationary processes in background or disease-associated mortality, but included seroprevalence data, accurately estimated annual infection and population abundance.</div>","language":"English","publisher":"Canadian Science Publishing","doi":"10.1139/cjfas-2021-0094","usgsCitation":"Trochta, J.T., Groner, M., Hershberger, P., and Branch, T., 2022, A novel approach for directly incorporating disease into fish stock assessment: A case study with seroprevalence data: Canadian Journal of Fisheries and Aquatic Sciences, v. 79, no. 4, p. 611-630, https://doi.org/10.1139/cjfas-2021-0094.","productDescription":"20 p.","startPage":"611","endPage":"630","ipdsId":"IP-129096","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":448840,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1139/cjfas-2021-0094","text":"Publisher Index Page"},{"id":396090,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"79","issue":"4","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Trochta, John T.","contributorId":279655,"corporation":false,"usgs":false,"family":"Trochta","given":"John","email":"","middleInitial":"T.","affiliations":[{"id":57329,"text":"School of Aquatic and Fishery Sciences, Box 355020, University of Washington, Seattle WA, 98195, USA","active":true,"usgs":false}],"preferred":false,"id":835274,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Groner, Maya 0000-0002-3381-6415","orcid":"https://orcid.org/0000-0002-3381-6415","contributorId":220169,"corporation":false,"usgs":true,"family":"Groner","given":"Maya","email":"","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":835275,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hershberger, Paul 0000-0002-2261-7760","orcid":"https://orcid.org/0000-0002-2261-7760","contributorId":203322,"corporation":false,"usgs":true,"family":"Hershberger","given":"Paul","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":835276,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Branch, Trevor A.","contributorId":172088,"corporation":false,"usgs":false,"family":"Branch","given":"Trevor A.","affiliations":[],"preferred":false,"id":835277,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70228926,"text":"70228926 - 2022 - Flood resilience in paired US–Mexico border cities: A study of binational risk perceptions","interactions":[],"lastModifiedDate":"2022-06-01T15:11:29.285634","indexId":"70228926","displayToPublicDate":"2022-02-09T11:51:56","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2822,"text":"Natural Hazards","active":true,"publicationSubtype":{"id":10}},"title":"Flood resilience in paired US–Mexico border cities: A study of binational risk perceptions","docAbstract":"<p><span>Disastrous floods in the twin cities of Nogales, Arizona, USA, and Nogales, Sonora, Mexico (collectively referred to as Ambos Nogales) occur annually in response to monsoonal summer rains. Flood-related hazards include property damage, impairment to sewage systems, sewage discharge, water contamination, erosion, and loss of life. Flood risk, particularly in Nogales, Sonora, is amplified by informal, “squatter” settlements in the watershed floodplain and associated development and infrastructure. The expected increase in precipitation intensity, resulting from climate change, poses further risk to flooding therein. We explore binational community perceptions of flooding, preferences for watershed management, and potential actions to address flooding and increase socio-ecological resilience in Ambos Nogales using standardized questionnaires and interviews to collect data about people and their preferences. We conducted 25 semi-structured interviews with local subject matter experts and gathered survey responses from community members in Ambos Nogales. Though survey response was limited, expected frequencies were high enough to conduct Chi-squared tests of independence to test for statistically significant relationships between survey variables. Results showed that respondents with previous experience with flooding corresponded with their level of concern about future floods. Additionally, respondents perceived greater flood-related risks from traveling across town and damage to vehicles than from inundation or damages to their homes or neighborhoods. Binationally, women respondents felt less prepared for future floods than men. On both sides of the border, community members and local experts agreed that Ambos Nogales lacks adequate preparation for future floods. To increase preparedness, they recommended flood risk education and awareness campaigns, implementation of green infrastructure, additional stormwater infrastructure (such as drainage systems), enhanced flood early warning systems, and reduction of flood flows through regulations to reduce the expansion of hard surfaces. This study contributes systematic collection of information about flood risk perceptions across an international border, including novel data regarding risks related to climate change and gender-based assessments of flood risk. Our finding of commonalities across both border communities, in perceptions of flood risk and in the types of risk reduction solutions recommended by community members, provides clear directions for flood risk education, outreach, and preparedness, as well as measures to enhance cross-border cooperation.</span></p>","language":"English","publisher":"Springer Link","doi":"10.1007/s11069-022-05225-x","usgsCitation":"Freimund, C.A., Garfin, G.M., Norman, L., Fisher, L., and Buizer, J., 2022, Flood resilience in paired US–Mexico border cities: A study of binational risk perceptions: Natural Hazards, v. 112, p. 1247-1271, https://doi.org/10.1007/s11069-022-05225-x.","productDescription":"25 p.","startPage":"1247","endPage":"1271","ipdsId":"IP-126099","costCenters":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"links":[{"id":448843,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1007/s11069-022-05225-x","text":"Publisher Index Page"},{"id":396437,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Mexico, United States","state":"Arizona, Sonora","city":"Nogales","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -111.5606689453125,\n              30.840931139029916\n            ],\n            [\n              -110.3466796875,\n              30.840931139029916\n            ],\n            [\n              -110.3466796875,\n              32.194208672875384\n            ],\n            [\n              -111.5606689453125,\n              32.194208672875384\n            ],\n            [\n              -111.5606689453125,\n              30.840931139029916\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"112","noUsgsAuthors":false,"publicationDate":"2022-02-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Freimund, Christopher A.","contributorId":280033,"corporation":false,"usgs":false,"family":"Freimund","given":"Christopher","email":"","middleInitial":"A.","affiliations":[{"id":50057,"text":"School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, USA","active":true,"usgs":false}],"preferred":false,"id":835919,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Garfin, Gregg M.","contributorId":205905,"corporation":false,"usgs":false,"family":"Garfin","given":"Gregg","email":"","middleInitial":"M.","affiliations":[{"id":7042,"text":"University of Arizona","active":true,"usgs":false}],"preferred":false,"id":835921,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Norman, Laura M. 0000-0002-3696-8406","orcid":"https://orcid.org/0000-0002-3696-8406","contributorId":203300,"corporation":false,"usgs":true,"family":"Norman","given":"Laura M.","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":835920,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Fisher, Larry A.","contributorId":280034,"corporation":false,"usgs":false,"family":"Fisher","given":"Larry A.","affiliations":[{"id":50057,"text":"School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, USA","active":true,"usgs":false}],"preferred":false,"id":835922,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Buizer, James","contributorId":280035,"corporation":false,"usgs":false,"family":"Buizer","given":"James","email":"","affiliations":[{"id":50057,"text":"School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, USA","active":true,"usgs":false}],"preferred":false,"id":835923,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70261013,"text":"70261013 - 2022 - Plant effects on and response to soil microbes in native and non-native Phragmites australis","interactions":[],"lastModifiedDate":"2024-11-20T16:52:50.129682","indexId":"70261013","displayToPublicDate":"2022-02-09T10:49:16","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1450,"text":"Ecological Applications","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Plant effects on and response to soil microbes in native and non-native <i>Phragmites australis</i>","title":"Plant effects on and response to soil microbes in native and non-native Phragmites australis","docAbstract":"<p><span>Plant–soil feedbacks (PSFs) mediate plant community dynamics and may plausibly facilitate plant invasions. Microbially mediated PSFs are defined by plant effects on soil microbes and subsequent changes in plant performance (responses), both positive and negative. For microbial interactions to benefit invasive plants disproportionately, native and invasive plants must either (1) have different effects on and responses to soil microbial communities or (2) only respond differently to similar microbial communities. In other words, invasive plants do not need to cultivate different microbial communities than natives if they respond differently to them. However, effects and responses are not often explored separately, making it difficult to determine the underlying causes of performance differences. We performed a reciprocal-transplant PSF experiment with multiple microbial inhibition treatments to determine how native and non-native lineages of&nbsp;</span><i>Phragmites australis</i><span>&nbsp;affect and respond to soil bacteria, fungi, and oomycetes. Non-native&nbsp;</span><i>Phragmites</i><span>&nbsp;is a large, fast-growing, cosmopolitan invasive plant, whereas the North American native variety is comparatively smaller, slower growing, and typically considered a desirable wetland plant. We identified the effects of each plant lineage on soil microbes using DNA meta-barcoding and linked plant responses to microbial communities. Both&nbsp;</span><i>Phragmites</i><span>&nbsp;lineages displayed equally weak, insignificant PSFs. We found evidence of slight differential effects on microbial community composition, but no significant differential plant responses. Soils conditioned by each lineage differed only slightly in bacterial community composition, but not in fungal composition. Additionally, native and non-native&nbsp;</span><i>Phragmites</i><span>&nbsp;lineages did not significantly differ in their response to similar soil microbial communities. Neither lineage appreciably differed when plant biomass was compared between those grown in sterile and live soils. Targeted microbial inhibitor treatments revealed both lineages were negatively impacted by soil bacteria, but the negative response was stronger in non-native&nbsp;</span><i>Phragmites</i><span>. These observations were opposite of expectations from invasion theory and imply that the success of non-native&nbsp;</span><i>Phragmites</i><span>, relative to the native lineage, does not result from its interaction with soil microorganisms. More broadly, quantifying plant effects on, and responses to soil microbes separately provides detailed and nuanced insight into plant-microbial interactions and their role in invasions, which could inform management outcomes for invasive plants.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/eap.2565","usgsCitation":"Bickford, W.A., Goldberg, D., Zak, D., Snow, D.S., and Kowalski, K., 2022, Plant effects on and response to soil microbes in native and non-native Phragmites australis: Ecological Applications, v. 32, no. 4, e2565, 18 p., https://doi.org/10.1002/eap.2565.","productDescription":"e2565, 18 p.","ipdsId":"IP-122406","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"links":[{"id":467201,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1002/eap.2565","text":"External Repository"},{"id":464361,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"32","issue":"4","noUsgsAuthors":false,"publicationDate":"2022-03-29","publicationStatus":"PW","contributors":{"authors":[{"text":"Bickford, Wesley A. 0000-0001-7612-1325 wbickford@usgs.gov","orcid":"https://orcid.org/0000-0001-7612-1325","contributorId":5687,"corporation":false,"usgs":true,"family":"Bickford","given":"Wesley","email":"wbickford@usgs.gov","middleInitial":"A.","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":918919,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Goldberg, Deborah E.","contributorId":346406,"corporation":false,"usgs":false,"family":"Goldberg","given":"Deborah E.","affiliations":[],"preferred":false,"id":918920,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Zak, Donald R.","contributorId":346407,"corporation":false,"usgs":false,"family":"Zak","given":"Donald R.","affiliations":[],"preferred":false,"id":918921,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Snow, Danielle S.","contributorId":346423,"corporation":false,"usgs":false,"family":"Snow","given":"Danielle","email":"","middleInitial":"S.","affiliations":[{"id":65481,"text":"Akima Systems Engineering","active":true,"usgs":false}],"preferred":false,"id":918922,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Kowalski, Kurt P. 0000-0002-8424-4701 kkowalski@usgs.gov","orcid":"https://orcid.org/0000-0002-8424-4701","contributorId":3768,"corporation":false,"usgs":true,"family":"Kowalski","given":"Kurt P.","email":"kkowalski@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":918923,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70236283,"text":"70236283 - 2022 - Foreword to the special Issue on ‘The rapidly expanding role of drones as a tool for wildlife research’","interactions":[],"lastModifiedDate":"2022-08-31T13:53:09.571447","indexId":"70236283","displayToPublicDate":"2022-02-09T08:51:31","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3777,"text":"Wildlife Research","active":true,"publicationSubtype":{"id":10}},"title":"Foreword to the special Issue on ‘The rapidly expanding role of drones as a tool for wildlife research’","docAbstract":"<p><span>Drones have emerged as a popular wildlife research tool, but their use for many species and environments remains untested and research is needed on validation of sampling approaches that are optimised for unpiloted aircraft. Here, we present a foreword to a special issue that features studies pushing the taxonomic and innovation boundaries of drone research and thus helps address these knowledge and application gaps. We then conclude by highlighting future drone research ideas that are likely to push biology and conservation in exciting new directions.</span></p>","language":"English","publisher":"CSIRO Publishing","doi":"10.1071/WR22006","usgsCitation":"Wirsing, A.J., Johnston, A.N., and Kiszka, J.J., 2022, Foreword to the special Issue on ‘The rapidly expanding role of drones as a tool for wildlife research’: Wildlife Research, v. 49, no. 1, p. i-v, https://doi.org/10.1071/WR22006.","productDescription":"5 p.","startPage":"i","endPage":"v","ipdsId":"IP-136864","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":448845,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1071/wr22006","text":"Publisher Index Page"},{"id":405994,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"49","issue":"1","noUsgsAuthors":false,"publicationDate":"2022-02-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Wirsing, Aaron J","contributorId":296041,"corporation":false,"usgs":false,"family":"Wirsing","given":"Aaron","email":"","middleInitial":"J","affiliations":[{"id":6934,"text":"University of Washington","active":true,"usgs":false}],"preferred":false,"id":850433,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Johnston, Aaron N. 0000-0003-4659-0504","orcid":"https://orcid.org/0000-0003-4659-0504","contributorId":201768,"corporation":false,"usgs":true,"family":"Johnston","given":"Aaron","email":"","middleInitial":"N.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":850434,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kiszka, Jeremy J.","contributorId":292061,"corporation":false,"usgs":false,"family":"Kiszka","given":"Jeremy","email":"","middleInitial":"J.","affiliations":[{"id":62816,"text":"Institute of Environment, Department of Biological Sciences, Florida International University","active":true,"usgs":false}],"preferred":false,"id":850435,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70229086,"text":"70229086 - 2022 - Prospective and retrospective evaluation of the U.S. Geological Survey public aftershock forecast for the 2019-2021 Southwest Puerto Rico Earthquake and aftershocks","interactions":[],"lastModifiedDate":"2022-02-28T14:52:31.521726","indexId":"70229086","displayToPublicDate":"2022-02-09T08:47:34","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3372,"text":"Seismological Research Letters","onlineIssn":"1938-2057","printIssn":"0895-0695","active":true,"publicationSubtype":{"id":10}},"title":"Prospective and retrospective evaluation of the U.S. Geological Survey public aftershock forecast for the 2019-2021 Southwest Puerto Rico Earthquake and aftershocks","docAbstract":"<p><span>The&nbsp;</span><span class=\"inline-formula no-formula-id\"><span id=\"MathJax-Element-1-Frame\" class=\"MathJax\" data-mathml=\"<math xmlns=&quot;http://www.w3.org/1998/Math/MathML&quot;><msub xmlns=&quot;&quot;><mi>M</mi><mi mathvariant=&quot;normal&quot;>w</mi></msub></math>\"><span id=\"MathJax-Span-1\" class=\"math\"><span><span id=\"MathJax-Span-2\" class=\"mrow\"><span id=\"MathJax-Span-3\" class=\"msub\"><i><span id=\"MathJax-Span-4\" class=\"mi\">M</span></i><sub><span id=\"MathJax-Span-5\" class=\"mi\">w </span></sub></span></span></span></span></span></span><span>6.4 Southwest Puerto Rico Earthquake of 7 January 2020 was accompanied by a robust fore‐ and aftershock sequence. The U.S. Geological Survey (USGS) has issued regular aftershock forecasts for more than a year since the mainshock, available on a public webpage. Forecasts were accompanied by interpretive and informational material, published in English and Spanish. Informational products included narrative “scenarios” for how the aftershock sequence could play out, infographics, and a report on the potential duration of the aftershock sequence through the next decade. Forecasts are based on the epidemic‐type aftershock sequence (ETAS) model and generated using the USGS AftershockForecaster software—an interactive graphical user interface built on the OpenSHA platform (</span><a class=\"link link-ref xref-bibr\" data-modal-source-id=\"rf10\">Field<span>&nbsp;</span><i>et&nbsp;al.</i>, 2003</a><span>). The initial forecast is based on past sequences in similar tectonic environments; subsequent forecasts are tuned to the ongoing sequence via Bayesian model updating. Probabilistic aftershock forecasts for the next day, week, month, and year were publicly released and archived at a daily to monthly tempo, allowing for a truly prospective test of the forecast. Here, we evaluate the forecast over the first year of the recorded aftershocks. The ETAS‐based forecast performed well overall, successfully capturing both the chance of having at least one earthquake of a given magnitude in a forecast interval as well as the non‐Poissonian distribution of the total number of aftershocks within an interval. A retrospective analysis shows that the ETAS model is a substantial improvement over the existing&nbsp;</span><a class=\"link link-ref xref-bibr\" data-modal-source-id=\"rf38\">Reasenberg and Jones (1989)</a><span>&nbsp;forecast model. The exercise also reveals some limitations of the current model, in particular, with respect to nonstationarities in the aftershock magnitude distribution and model parameters throughout the evolving sequence.</span></p>","language":"English","publisher":"Seismological Society of America","doi":"10.1785/0220210222","usgsCitation":"van der Elst, N., Hardebeck, J.L., Michael, A.J., McBride, S., and Vanacore, E., 2022, Prospective and retrospective evaluation of the U.S. Geological Survey public aftershock forecast for the 2019-2021 Southwest Puerto Rico Earthquake and aftershocks: Seismological Research Letters, v. 93, no. 2A, p. 620-640, https://doi.org/10.1785/0220210222.","productDescription":"21 p.","startPage":"620","endPage":"640","ipdsId":"IP-132558","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":396546,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Puerto Rico","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -67.22259521484375,\n              17.906875582164254\n            ],\n            [\n              -66.90811157226562,\n              17.906875582164254\n            ],\n            [\n              -66.90811157226562,\n              18.184997171309004\n            ],\n            [\n              -67.22259521484375,\n              18.184997171309004\n            ],\n            [\n              -67.22259521484375,\n              17.906875582164254\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"93","issue":"2A","noUsgsAuthors":false,"publicationDate":"2022-02-09","publicationStatus":"PW","contributors":{"authors":[{"text":"van der Elst, Nicholas 0000-0002-3812-1153 nvanderelst@usgs.gov","orcid":"https://orcid.org/0000-0002-3812-1153","contributorId":147858,"corporation":false,"usgs":true,"family":"van der Elst","given":"Nicholas","email":"nvanderelst@usgs.gov","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true},{"id":234,"text":"Earthquake Hazards Program","active":true,"usgs":true}],"preferred":true,"id":836441,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hardebeck, Jeanne L. 0000-0002-6737-7780","orcid":"https://orcid.org/0000-0002-6737-7780","contributorId":254964,"corporation":false,"usgs":true,"family":"Hardebeck","given":"Jeanne","email":"","middleInitial":"L.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":836442,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Michael, Andrew J. 0000-0002-2403-5019 michael@usgs.gov","orcid":"https://orcid.org/0000-0002-2403-5019","contributorId":1280,"corporation":false,"usgs":true,"family":"Michael","given":"Andrew","email":"michael@usgs.gov","middleInitial":"J.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true},{"id":234,"text":"Earthquake Hazards Program","active":true,"usgs":true}],"preferred":true,"id":836443,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McBride, Sara K. 0000-0002-8062-6542","orcid":"https://orcid.org/0000-0002-8062-6542","contributorId":206933,"corporation":false,"usgs":true,"family":"McBride","given":"Sara K.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true},{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":836444,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Vanacore, Elizabeth","contributorId":287037,"corporation":false,"usgs":false,"family":"Vanacore","given":"Elizabeth","affiliations":[{"id":61452,"text":"Univ. of Puerto Rico","active":true,"usgs":false}],"preferred":false,"id":836445,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70228396,"text":"70228396 - 2022 - Multi-species inference of exotic annual and native perennial grasses in rangelands of the western United States using Harmonized Landsat and Sentinel-2 data","interactions":[],"lastModifiedDate":"2022-04-04T11:13:24.753751","indexId":"70228396","displayToPublicDate":"2022-02-09T08:26:22","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3250,"text":"Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Multi-species inference of exotic annual and native perennial grasses in rangelands of the western United States using Harmonized Landsat and Sentinel-2 data","docAbstract":"<p><span>The invasion of exotic annual grass (EAG), e.g., cheatgrass (</span><i><span class=\"html-italic\">Bromus tectorum</span></i><span>) and medusahead (</span><i><span class=\"html-italic\">Taeniatherum caput-medusae</span></i><span>), into rangeland ecosystems of the western United States is a broad-scale problem that affects wildlife habitats, increases wildfire frequency, and adds to land management costs. However, identifying individual species of EAG abundance from remote sensing, particularly at early stages of invasion or growth, can be problematic because of overlapping controls and similar phenological characteristics among native and other exotic vegetation. Subsequently, refining and developing tools capable of quantifying the abundance and phenology of annual and perennial grass species would be beneficial to help inform conservation and management efforts at local to regional scales. Here, we deploy an enhanced version of the U.S. Geological Survey Rangeland Exotic Plant Monitoring System to develop timely and accurate maps of annual (2016–2020) and intra-annual (May 2021 and July 2021) abundances of exotic annual and perennial grass species throughout the rangelands of the western United States. This monitoring system leverages field observations and remote-sensing data with artificial intelligence/machine learning to rapidly produce annual and early season estimates of species abundances at a 30-m spatial resolution. We introduce a fully automated and multi-task deep-learning framework to simultaneously predict and generate weekly, near-seamless composites of Harmonized Landsat Sentinel-2 spectral data. These data, along with auxiliary datasets and time series metrics, are incorporated into an ensemble of independent XGBoost models. This study demonstrates that inclusion of the Normalized Difference Vegetation Index and Normalized Difference Wetness Index time-series data generated from our deep-learning framework enables near real-time and accurate mapping of EAG (Median Absolute Error (MdAE): 3.22, 2.72, and 0.02; and correlation coefficient (r): 0.82, 0.81, and 0.73; respectively for EAG, cheatgrass, and medusahead) and native perennial grass abundance (MdAE: 2.51, r:0.72 for Sandberg bluegrass (</span><i><span class=\"html-italic\">Poa secunda</span></i><span>)). Our approach and the resulting data provide insights into rangeland grass dynamics, which will be useful for applications, such as fire and drought monitoring, habitat suitability mapping, as well as land-cover and land-change modelling. Spatially explicit, timely, and accurate species-specific abundance datasets provide invaluable information to land managers.</span></p>","language":"English","publisher":"MDPI","doi":"10.3390/rs14040807","usgsCitation":"Dahal, D., Pastick, N.J., Boyte, S., Parajuli, S., Oimoen, M.J., and Megard, L.J., 2022, Multi-species inference of exotic annual and native perennial grasses in rangelands of the western United States using Harmonized Landsat and Sentinel-2 data: Remote Sensing, v. 14, no. 4, Article: 807, 21 p. ; 3 Data Releases, https://doi.org/10.3390/rs14040807.","productDescription":"Article: 807, 21 p. ; 3 Data Releases","ipdsId":"IP-135991","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":448849,"rank":6,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/rs14040807","text":"Publisher Index Page"},{"id":486325,"rank":7,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P14VQEGO","text":"USGS data release","linkHelpText":"Early Estimates of Exotic Annual Grass (EAG) in the Sagebrush Biome, USA, 2025"},{"id":435974,"rank":5,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P1Y5TZBM","text":"USGS data release","linkHelpText":"Early Estimates of Exotic Annual Grass (EAG) in the Sagebrush Biome, USA, 2024"},{"id":397952,"rank":4,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9GC5JVG","text":"USGS data release","description":"USGS data release","linkHelpText":"Fractional Estimates of Multiple Exotic Annual Grass (EAG) Species and Sandberg bluegrass in the Sagebrush Biome, USA, 2016 - 2020"},{"id":397951,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9AVGRH8","text":"USGS data release","description":"USGS data release","linkHelpText":"Early Estimates of Exotic Annual Grass (EAG) in the Sagebrush Biome, USA, May 2021, v1"},{"id":395764,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":397950,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9FG6X9Q","text":"USGS data release","description":"USGS data release","linkHelpText":"Early Estimates of Exotic Annual Grass (EAG) in the Sagebrush Biome, USA, July 2021, (ver 2.0, January 2022)"}],"country":"United States","otherGeospatial":"western United States","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -101.865234375,\n              30.031055426540206\n            ],\n            [\n              -103.3154296875,\n              32.65787573695528\n            ],\n            [\n              -103.6669921875,\n              34.74161249883172\n            ],\n            [\n              -100.6787109375,\n              36.63316209558658\n            ],\n            [\n              -100.72265625,\n              36.98500309285596\n            ],\n            [\n              -101.29394531249999,\n              37.64903402157866\n            ],\n            [\n              -103.4033203125,\n              39.198205348894795\n            ],\n            [\n              -104.2822265625,\n              40.713955826286046\n            ],\n            [\n              -102.7880859375,\n              43.004647127794435\n            ],\n            [\n              -102.3046875,\n              47.84265762816538\n            ],\n            [\n              -103.53515625,\n              48.980216985374994\n            ],\n            [\n              -121.201171875,\n              49.009050809382046\n            ],\n            [\n              -121.5087890625,\n              46.92025531537451\n            ],\n            [\n              -122.25585937500001,\n              43.96119063892024\n            ],\n            [\n              -122.25585937500001,\n              41.27780646738183\n            ],\n            [\n              -123.662109375,\n              39.605688178320804\n            ],\n            [\n              -124.01367187499999,\n              38.95940879245423\n            ],\n            [\n              -121.86035156249999,\n              36.38591277287651\n            ],\n            [\n              -120.58593749999999,\n              34.70549341022544\n            ],\n            [\n              -120.673828125,\n              33.97980872872457\n            ],\n            [\n              -117.99316406249999,\n              32.91648534731439\n            ],\n            [\n              -117.2900390625,\n              32.69486597787505\n            ],\n            [\n              -114.9609375,\n              32.54681317351514\n            ],\n            [\n              -110.74218749999999,\n              31.27855085894653\n            ],\n            [\n              -108.06152343749999,\n              31.466153715024294\n            ],\n            [\n              -108.06152343749999,\n              31.952162238024975\n            ],\n            [\n              -105.29296874999999,\n              30.977609093348686\n            ],\n            [\n              -104.19433593749999,\n              29.611670115197377\n            ],\n            [\n              -102.919921875,\n              28.998531814051795\n            ],\n            [\n              -101.865234375,\n              30.031055426540206\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"14","issue":"4","noUsgsAuthors":false,"publicationDate":"2022-02-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Dahal, Devendra 0000-0001-9594-1249","orcid":"https://orcid.org/0000-0001-9594-1249","contributorId":192023,"corporation":false,"usgs":false,"family":"Dahal","given":"Devendra","affiliations":[],"preferred":false,"id":834192,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Pastick, Neal J. 0000-0002-8169-3018 njpastick@usgs.gov","orcid":"https://orcid.org/0000-0002-8169-3018","contributorId":4785,"corporation":false,"usgs":true,"family":"Pastick","given":"Neal","email":"njpastick@usgs.gov","middleInitial":"J.","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true},{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":834193,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Boyte, Stephen P. 0000-0002-5462-3225","orcid":"https://orcid.org/0000-0002-5462-3225","contributorId":205374,"corporation":false,"usgs":true,"family":"Boyte","given":"Stephen P.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":834194,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Parajuli, Sujan 0000-0002-1652-3063","orcid":"https://orcid.org/0000-0002-1652-3063","contributorId":275653,"corporation":false,"usgs":false,"family":"Parajuli","given":"Sujan","affiliations":[{"id":56871,"text":"KBR Inc. Contractor to USGS EROS","active":true,"usgs":false}],"preferred":false,"id":834195,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Oimoen, Michael J. 0000-0003-3611-6227","orcid":"https://orcid.org/0000-0003-3611-6227","contributorId":275654,"corporation":false,"usgs":false,"family":"Oimoen","given":"Michael","email":"","middleInitial":"J.","affiliations":[{"id":56871,"text":"KBR Inc. Contractor to USGS EROS","active":true,"usgs":false}],"preferred":false,"id":834196,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Megard, Logan J. 0000-0002-0150-4521","orcid":"https://orcid.org/0000-0002-0150-4521","contributorId":275655,"corporation":false,"usgs":false,"family":"Megard","given":"Logan","email":"","middleInitial":"J.","affiliations":[{"id":56872,"text":"C2G Inc. Contractor to USGS EROS","active":true,"usgs":false}],"preferred":false,"id":834197,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70230388,"text":"70230388 - 2022 - Ground failure triggered by the 7 January 2020 M6.4 Puerto Rico earthquake","interactions":[],"lastModifiedDate":"2022-04-11T12:09:16.143542","indexId":"70230388","displayToPublicDate":"2022-02-09T07:07:18","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3372,"text":"Seismological Research Letters","onlineIssn":"1938-2057","printIssn":"0895-0695","active":true,"publicationSubtype":{"id":10}},"title":"Ground failure triggered by the 7 January 2020 M6.4 Puerto Rico earthquake","docAbstract":"<div id=\"132659032\" class=\"article-section-wrapper js-article-section js-content-section  \"><p>The 7 January 2020<span>&nbsp;</span><strong>M</strong>&nbsp;6.4 Puerto Rico earthquake, the mainshock of an extended earthquake sequence, triggered significant ground failure. In this study, we detail the ground failure that occurred based largely on a postearthquake field reconnaissance campaign that we conducted. We documented more than 300 landslides, mainly rock falls that were concentrated in areas where peak ground acceleration (PGA) exceeded 30%<i>g</i>; sparse smaller landslides occurred in highly susceptible areas more than 50&nbsp;km from the epicenter and at PGA values &lt;10%<i>g</i>. Though some of the largest mass movements were in natural slopes, rock falls in road cuts had more impact because they caused widespread transportation disruption. Some structures also were damaged by landslides, but no landslide‐related fatalities were reported. Liquefaction and related lateral spreading were severe in some areas, causing damage to residential and commercial structures and a power plant. Most of the liquefaction occurred in coastal areas where shaking exceeded 50%<i>g</i>, though some of the most damaging instances were in Ponce, where shaking estimates were as low as 20%<i>g</i>. In this article, we summarize the most notable ground failures and detail the overall patterns that we observed. The observations and compiled inventory datasets presented here are valuable because no island‐wide hazard maps for earthquake‐triggered landslides or liquefaction have been developed for Puerto Rico, and postevent inventories are vital for such an effort. In general, the datasets presented here contribute to a global understanding of coseismic ground‐failure hazard by presenting detailed observations for a relatively moderate ground‐failure event with well‐constrained shaking estimates; current models and expectations are biased by the tendency to collect detailed datasets mainly for exceptional events.</p></div>","language":"English","publisher":"Seismological Society of America","doi":"10.1785/0220210235","usgsCitation":"Allstadt, K.E., Thompson, E.M., Bayouth Garcia, D., Irizarry Brugman, E., Hughes, K.S., and Schmitt, R.G., 2022, Ground failure triggered by the 7 January 2020 M6.4 Puerto Rico earthquake: Seismological Research Letters, v. 93, no. 2A, p. 594-608, https://doi.org/10.1785/0220210235.","productDescription":"15 p.","startPage":"594","endPage":"608","ipdsId":"IP-134674","costCenters":[{"id":300,"text":"Geologic Hazards Science 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Stephen","contributorId":218339,"corporation":false,"usgs":false,"family":"Hughes","given":"K.","email":"","middleInitial":"Stephen","affiliations":[{"id":16585,"text":"University of Puerto Rico - Mayaguez","active":true,"usgs":false}],"preferred":false,"id":840157,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Schmitt, Robert G. 0000-0001-8060-1954 rschmitt@usgs.gov","orcid":"https://orcid.org/0000-0001-8060-1954","contributorId":5611,"corporation":false,"usgs":true,"family":"Schmitt","given":"Robert","email":"rschmitt@usgs.gov","middleInitial":"G.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":840158,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70229026,"text":"70229026 - 2022 - Baseline gene expression levels in Falkland-Malvinas Island penguins: Towards a new monitoring paradigm","interactions":[],"lastModifiedDate":"2022-02-25T12:43:13.091378","indexId":"70229026","displayToPublicDate":"2022-02-09T06:40:42","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":10135,"text":"Life","active":true,"publicationSubtype":{"id":10}},"title":"Baseline gene expression levels in Falkland-Malvinas Island penguins: Towards a new monitoring paradigm","docAbstract":"<div class=\"art-abstract in-tab hypothesis_container\">Health diagnostics of wildlife have historically relied on the evaluation of select serum biomarkers and the identification of a contaminant or pathogen burden within specific tissues as an indicator of a level of insult. However, these approaches fail to measure the physiological reaction of the individual to stressors, thus limiting the scope of interpretation. Gene-based health diagnostics provide an opportunity for an alternate, whole-system, or holistic assessment of health, not only in individuals or populations but potentially in ecosystems. Seabirds are among the most threatened marine taxonomic groups in the world, with ~25% of this species currently listed as threatened or considered of special concern; among seabirds, the penguins (Family Spheniscidae) are the most threatened seabird Family. We used gene expression to develop baseline physiological indices for wild penguins in the Falkland-Malvinas Islands, and captive zoo penguins. We identified the almost complete statistical separation of penguin groups (gentoo Detroit Zoo, gentoo Falkland-Malvinas Islands, rockhopper Detroit Zoo, and rockhopper Falkland-Malvinas Islands) based on gene expression profiles. Implementation of long-term longitudinal studies would allow for the assessment of temporal increases or decreases of select transcripts and would facilitate interpretation of the drivers of change.<span id=\"_mce_caret\" data-mce-bogus=\"1\" data-mce-type=\"format-caret\"><span></span></span></div>","language":"English","publisher":"MDPI","doi":"10.3390/life12020258","usgsCitation":"Bowen, L., Waters-Dynes, S.C., Stott, J., Duncan, A., Meyerson, R., and Woodhouse, S., 2022, Baseline gene expression levels in Falkland-Malvinas Island penguins: Towards a new monitoring paradigm: Life, v. 12, no. 2, 258, 15 p., https://doi.org/10.3390/life12020258.","productDescription":"258, 15 p.","ipdsId":"IP-137240","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":448853,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3390/life12020258","text":"Publisher Index Page"},{"id":396470,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Falkland-Malvinas Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -61.435546875,\n              -52.49615953109709\n            ],\n            [\n              -57.15087890625,\n              -52.49615953109709\n            ],\n            [\n              -57.15087890625,\n              -50.778155274659234\n            ],\n            [\n              -61.435546875,\n              -50.778155274659234\n            ],\n            [\n              -61.435546875,\n              -52.49615953109709\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"12","issue":"2","noUsgsAuthors":false,"publicationDate":"2022-02-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Bowen, Lizabeth 0000-0001-9115-4336 lbowen@usgs.gov","orcid":"https://orcid.org/0000-0001-9115-4336","contributorId":4539,"corporation":false,"usgs":true,"family":"Bowen","given":"Lizabeth","email":"lbowen@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":836152,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Waters-Dynes, Shannon C. 0000-0002-9707-4684 swaters@usgs.gov","orcid":"https://orcid.org/0000-0002-9707-4684","contributorId":5826,"corporation":false,"usgs":true,"family":"Waters-Dynes","given":"Shannon","email":"swaters@usgs.gov","middleInitial":"C.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":836153,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stott, Jeffrey L","contributorId":280430,"corporation":false,"usgs":false,"family":"Stott","given":"Jeffrey L","affiliations":[{"id":7214,"text":"University of California, Davis","active":true,"usgs":false}],"preferred":false,"id":836154,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Duncan, Ann","contributorId":280432,"corporation":false,"usgs":false,"family":"Duncan","given":"Ann","email":"","affiliations":[{"id":49095,"text":"Detroit Zoo","active":true,"usgs":false}],"preferred":false,"id":836155,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Meyerson, Randi","contributorId":146389,"corporation":false,"usgs":false,"family":"Meyerson","given":"Randi","email":"","affiliations":[{"id":16683,"text":"Toledo Zoo, Toledo, OH","active":true,"usgs":false}],"preferred":false,"id":836156,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Woodhouse, Sarah","contributorId":280434,"corporation":false,"usgs":false,"family":"Woodhouse","given":"Sarah","email":"","affiliations":[{"id":57510,"text":"Henry Doorly Zoo and Aquarium","active":true,"usgs":false}],"preferred":false,"id":836157,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70232643,"text":"70232643 - 2022 - Juvenile continental crust evolution in a modern oceanic arc setting: Petrogenesis of Cenozoic felsic plutons in Fiji, SW Pacific","interactions":[],"lastModifiedDate":"2022-07-11T11:28:14.938622","indexId":"70232643","displayToPublicDate":"2022-02-09T06:24:54","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1759,"text":"Geochimica et Cosmochimica Acta","active":true,"publicationSubtype":{"id":10}},"title":"Juvenile continental crust evolution in a modern oceanic arc setting: Petrogenesis of Cenozoic felsic plutons in Fiji, SW Pacific","docAbstract":"<div id=\"abstracts\" class=\"Abstracts u-font-serif\"><div id=\"ab005\" class=\"abstract author\" lang=\"en\"><div id=\"as005\"><p id=\"sp0005\">Viti Levu, Fiji, provides one of the best exposed Phanerozoic analogues for the formation of juvenile continental crust in an intra-oceanic setting. Tonalites and trondhjemites are present in several large (75–150&nbsp;km<sup>2</sup>) adjacent, mid-Cenozoic plutons. We report major and trace element data including rare earth element (REE) and high-precision high field strength element (HFSE) compositions, new Hf-Nd-Sr-Pb isotope data, and zircon U/Pb-ages, O-Hf isotopes, and trace elements, from five different plutons. The Eocene Yavuna pluton and the Miocene Colo plutons are mainly composed of tonalites and trondhjemites and represent the exposed middle crust of the former Vitiaz island arc. The plutons can be divided into three suites. One suite is light REE (LREE) depleted with some trace element ratios lower than average normal mid-ocean ridge basalts (N-MORB). A second suite has flat REE patterns similar to local island arc basalts. Both suites occur near the coast of Viti Levu, include a wide compositional spectrum from gabbro to tonalite, and can be produced mostly by fractional crystallization of mafic precursor melts. The third suite is characterized by LREE enrichments with higher La<sub>N</sub>/Yb<sub>N</sub><span>&nbsp;</span>(2.3–4.9), higher Zr/Y (4.3–7.1), and lower Nb/Ta (9.6–12.4). They occur closer to the center of the island and are bimodal trondhjemite-gabbro intrusions. These characteristics are consistent with formation mostly by partial melting of mafic crust. Trace element modeling shows that the trace element ratios of the third suite can be produced by 10–20 % melting of the mafic crust in the presence of residual amphibole, resulting in the retention of the medium REE (MREE) and diagnostic trace element ratios including low Nb/Ta and high Zr/Y. Geochemical similarities of the LREE enriched suite to typical “low”-pressure Archean tonalites-trondhjemites-granodiorites (TTGs) imply a common petrogenetic origin and similar mechanisms for the generation of juvenile Archean and modern differentiated crust by partial melting of mafic crust with residual amphibole. In modern oceanic arcs, genetically unrelated felsic plutonic as well as volcanic rocks co-exist, and in this regard, the Fijian plutons accompany major tectonic disruptions to arc processes.</p></div></div></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.gca.2021.11.033","usgsCitation":"Marien, C.S., Drewes-Todd, E.K., Stork, A., Todd, E., Gill, J.B., Hoffman, J.E., Tani, K., Allen, C.M., and Munker, C., 2022, Juvenile continental crust evolution in a modern oceanic arc setting: Petrogenesis of Cenozoic felsic plutons in Fiji, SW Pacific: Geochimica et Cosmochimica Acta, v. 320, p. 339-365, https://doi.org/10.1016/j.gca.2021.11.033.","productDescription":"26 p.","startPage":"339","endPage":"365","ipdsId":"IP-126025","costCenters":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"links":[{"id":403359,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Fiji","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              175.25390624999997,\n              -19.76670355171696\n            ],\n            [\n              182.109375,\n              -19.76670355171696\n            ],\n            [\n              182.109375,\n              -14.306969497825788\n            ],\n            [\n              175.25390624999997,\n              -14.306969497825788\n            ],\n            [\n              175.25390624999997,\n              -19.76670355171696\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"320","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Marien, Chris S.","contributorId":292913,"corporation":false,"usgs":false,"family":"Marien","given":"Chris","email":"","middleInitial":"S.","affiliations":[{"id":63070,"text":"Institut für Geologie und Mineralogie, University of Cologne, 50674 Köln, Germany","active":true,"usgs":false}],"preferred":false,"id":846163,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Drewes-Todd, Elizabeth Kathleen 0000-0003-0692-3714","orcid":"https://orcid.org/0000-0003-0692-3714","contributorId":243351,"corporation":false,"usgs":true,"family":"Drewes-Todd","given":"Elizabeth","email":"","middleInitial":"Kathleen","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":846162,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stork, Allen","contributorId":292914,"corporation":false,"usgs":false,"family":"Stork","given":"Allen","email":"","affiliations":[{"id":63071,"text":"Department of Geology, Western Colorado University, Gunnison CO, USA","active":true,"usgs":false}],"preferred":false,"id":846164,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Todd, Erin 0000-0002-4871-9730 etodd@usgs.gov","orcid":"https://orcid.org/0000-0002-4871-9730","contributorId":202811,"corporation":false,"usgs":true,"family":"Todd","given":"Erin","email":"etodd@usgs.gov","affiliations":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":846165,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Gill, James B 0000-0003-2584-9687","orcid":"https://orcid.org/0000-0003-2584-9687","contributorId":248602,"corporation":false,"usgs":false,"family":"Gill","given":"James","email":"","middleInitial":"B","affiliations":[{"id":6949,"text":"University of California, Santa Cruz","active":true,"usgs":false}],"preferred":false,"id":846166,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hoffman, J. Elis 0000-0001-6670-1393","orcid":"https://orcid.org/0000-0001-6670-1393","contributorId":292915,"corporation":false,"usgs":false,"family":"Hoffman","given":"J.","email":"","middleInitial":"Elis","affiliations":[{"id":63072,"text":"Institut für Geologische Wissenschaften, Freie Universität Berlin, 12249 Berlin, Germany","active":true,"usgs":false}],"preferred":false,"id":846167,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Tani, Kenichiro 0000-0003-3374-8608","orcid":"https://orcid.org/0000-0003-3374-8608","contributorId":292916,"corporation":false,"usgs":false,"family":"Tani","given":"Kenichiro","email":"","affiliations":[{"id":63073,"text":"Department of Geology and Palaeontology, National Museum of Nature and Science, Japan","active":true,"usgs":false}],"preferred":false,"id":846168,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Allen, Charlotte M. 0000-0002-7288-6758","orcid":"https://orcid.org/0000-0002-7288-6758","contributorId":292917,"corporation":false,"usgs":false,"family":"Allen","given":"Charlotte","email":"","middleInitial":"M.","affiliations":[{"id":63074,"text":"Research School of Earth Sciences, The Australian National University, Canberra, ACT 0200, Australia","active":true,"usgs":false}],"preferred":false,"id":846169,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Munker, Carsten 0000-0001-6406-559X","orcid":"https://orcid.org/0000-0001-6406-559X","contributorId":292918,"corporation":false,"usgs":false,"family":"Munker","given":"Carsten","email":"","affiliations":[{"id":63070,"text":"Institut für Geologie und Mineralogie, University of Cologne, 50674 Köln, Germany","active":true,"usgs":false}],"preferred":false,"id":846170,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70228695,"text":"70228695 - 2022 - Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases","interactions":[],"lastModifiedDate":"2023-01-12T15:30:00.992526","indexId":"70228695","displayToPublicDate":"2022-02-08T11:24:37","publicationYear":"2022","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":10116,"text":"Biology Methods and Protocols","active":true,"publicationSubtype":{"id":10}},"title":"Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases","docAbstract":"<p><span>The causative agents of most coral diseases today remain unknown, complicating disease response and restoration efforts. Pathogen identifications can be hampered by complex microbial communities naturally associated with corals and seawater, which create complicating “background noise” that can potentially obscure a pathogen’s signal. Here, we outline an approach to investigate waterborne coral diseases that use a combination of coral mesocosms, tangential flow filtration, and size fractionation to reduce the impact of this background microbial diversity, compensate for unknown infectious dose, and further narrow the suspect pool of potential pathogens. As proof of concept, we use this method to compare the bacterial communities shed into six&nbsp;</span><i>Montastraea cavernosa</i><span>&nbsp;coral mesocosms and demonstrate this method effectively detects differences between diseased and healthy coral colonies. We found several amplicon sequence variants (ASVs) in the diseased mesocosms that represented 100% matches with ASVs identified in prior studies of diseased coral tissue, further illustrating the effectiveness of our approach. Our described method is an effective alternative to using coral tissue or mucus to investigate waterborne coral diseases of unknown etiology and can help more quickly narrow the pool of possible pathogens to better aid in disease response efforts. Additionally, this versatile method can be easily adapted to characterize either the entire microbial community associated with a coral or target-specific microbial groups, making it a beneficial approach regardless of whether a causative agent is suspected or is completely unknown.</span></p>","language":"English","publisher":"Oxford University Press","doi":"10.1093/biomethods/bpac007","usgsCitation":"Evans, J.S., Paul, V.J., Ushijima, B., and Kellogg, C.A., 2022, Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases: Biology Methods and Protocols, v. 7, no. 1, bpac007, 8 p., https://doi.org/10.1093/biomethods/bpac007.","productDescription":"bpac007, 8 p.","ipdsId":"IP-133508","costCenters":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":448856,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/biomethods/bpac007","text":"Publisher Index Page"},{"id":396118,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Florida","city":"Marathon","otherGeospatial":"Key West Nursery","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -82.14340209960938,\n              24.442148824865637\n            ],\n            [\n              -81.6668701171875,\n              24.442148824865637\n            ],\n            [\n              -81.6668701171875,\n              24.669482313373848\n            ],\n            [\n              -82.14340209960938,\n              24.669482313373848\n            ],\n            [\n              -82.14340209960938,\n              24.442148824865637\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -81.19583129882812,\n              24.61830581010988\n            ],\n            [\n              -80.90469360351562,\n              24.61830581010988\n            ],\n            [\n              -80.90469360351562,\n              24.79047481357294\n            ],\n            [\n              -81.19583129882812,\n              24.79047481357294\n            ],\n            [\n              -81.19583129882812,\n              24.61830581010988\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"7","issue":"1","noUsgsAuthors":false,"publicationDate":"2022-02-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Evans, James S. 0000-0002-9977-1627 jsevans@usgs.gov","orcid":"https://orcid.org/0000-0002-9977-1627","contributorId":279528,"corporation":false,"usgs":true,"family":"Evans","given":"James","email":"jsevans@usgs.gov","middleInitial":"S.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":835095,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Paul, Valerie J. 0000-0002-4691-1569","orcid":"https://orcid.org/0000-0002-4691-1569","contributorId":279530,"corporation":false,"usgs":false,"family":"Paul","given":"Valerie","email":"","middleInitial":"J.","affiliations":[{"id":57268,"text":"Smithsonian Marine Station","active":true,"usgs":false}],"preferred":false,"id":835096,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ushijima, Blake","contributorId":91782,"corporation":false,"usgs":false,"family":"Ushijima","given":"Blake","email":"","affiliations":[{"id":13394,"text":"Hawai‘i Institute of Marine Biology","active":true,"usgs":false}],"preferred":false,"id":835097,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kellogg, Christina A. 0000-0002-6492-9455 ckellogg@usgs.gov","orcid":"https://orcid.org/0000-0002-6492-9455","contributorId":391,"corporation":false,"usgs":true,"family":"Kellogg","given":"Christina","email":"ckellogg@usgs.gov","middleInitial":"A.","affiliations":[{"id":506,"text":"Office of the AD Ecosystems","active":true,"usgs":true},{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":835098,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
]}