{"pageNumber":"43","pageRowStart":"1050","pageSize":"25","recordCount":165464,"records":[{"id":70272292,"text":"70272292 - 2025 - Simple bagged movement models for telemetry data","interactions":[],"lastModifiedDate":"2025-11-20T16:07:50.517031","indexId":"70272292","displayToPublicDate":"2025-09-07T09:05:10","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Simple bagged movement models for telemetry data","docAbstract":"<p><span>Determining which statistical methods are appropriate for data is both user and data dependent and prone to change as new methodology becomes available. This process encompasses model ideation, model selection, and determining appropriate use of statistical methods. Literature on models for animal movement emerging in the past two decades has yielded a rich collection of statistical methods garnering much deserved positive attention. Among such efforts, there is limited investigation of the broader place for simple machine learning methodology in animal movement modeling. We propose a bagged (i.e., bootstrap aggregated) animal movement model using simple, off-the-shelf machine learning algorithms. The model is intuitive, retains statistical inference about characteristics of animal movement (i.e., estimated from model-based summary statistics), and only requires knowledge of elementary statistical and machine learning analysis to understand. We show by simulation that our model can provide unbiased estimates of pertinent characteristics of animal movement (e.g., daily displacement) in the presence of large and realistic location error. We believe that increasing accessible literature on simple machine learning animal movement models provides valuable pedagogical and practical support for researchers using statistical models to study animal movement.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/ece3.72060","usgsCitation":"Whetten, A.B., Hefley, T.J., Haukos, D.A., and Brewer, D.E., 2025, Simple bagged movement models for telemetry data: Ecology and Evolution, v. 15, no. 9, e72060, 14 p., https://doi.org/10.1002/ece3.72060.","productDescription":"e72060, 14 p.","ipdsId":"IP-178248","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":496760,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.72060","text":"Publisher Index Page"},{"id":496692,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"15","issue":"9","noUsgsAuthors":false,"publicationDate":"2025-09-07","publicationStatus":"PW","contributors":{"authors":[{"text":"Whetten, Andrew B.","contributorId":362668,"corporation":false,"usgs":false,"family":"Whetten","given":"Andrew","middleInitial":"B.","affiliations":[{"id":12661,"text":"Kansas State University","active":true,"usgs":false}],"preferred":false,"id":950708,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hefley, Trevor J.","contributorId":362671,"corporation":false,"usgs":false,"family":"Hefley","given":"Trevor","middleInitial":"J.","affiliations":[{"id":12661,"text":"Kansas State University","active":true,"usgs":false}],"preferred":false,"id":950709,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Haukos, David A. 0000-0001-5372-9960 dhaukos@usgs.gov","orcid":"https://orcid.org/0000-0001-5372-9960","contributorId":3664,"corporation":false,"usgs":true,"family":"Haukos","given":"David","email":"dhaukos@usgs.gov","middleInitial":"A.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":950710,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Brewer, Dustin E.","contributorId":362674,"corporation":false,"usgs":false,"family":"Brewer","given":"Dustin","middleInitial":"E.","affiliations":[{"id":12722,"text":"Cornell University","active":true,"usgs":false}],"preferred":false,"id":950711,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70274542,"text":"70274542 - 2025 - Small fish, big implications: Considerations for an ecosystem approach to capelin fisheries management","interactions":[],"lastModifiedDate":"2026-04-01T22:23:26.635675","indexId":"70274542","displayToPublicDate":"2025-09-06T15:09:19","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3278,"text":"Reviews in Fish Biology and Fisheries","active":true,"publicationSubtype":{"id":10}},"title":"Small fish, big implications: Considerations for an ecosystem approach to capelin fisheries management","docAbstract":"<p><span id=\"_mce_caret\" data-mce-bogus=\"1\" data-mce-type=\"format-caret\"><span>Climate-driven changes in the Subarctic will directly impact capelin populations and the ecosystem they inhabit, including their predators, prey, and physical habitats. Consequently, incorporating ecosystem considerations in future capelin fisheries management is crucial. In this study, a multidisciplinary group of experts critically evaluated whether the current capelin stock assessment and management frameworks for the four main capelin stocks in the Barents Sea (BS), Iceland-East Greenland-Jan Mayen (IEGJM), Newfoundland and Labrador shelf (NL) and Alaska (AK) align with the principles of an Ecosystem Approach to Fisheries Management (EAFM). An evidence-based ranking of our knowledge on current capelin dynamics across ecological, economic, and social dimensions was conducted, using expert knowledge supported by literature. This exercise also identified data currently used for assessment and management, which highlighted that the existing capelin assessment frameworks include varying degrees of EAFM elements across stocks, such as considerations of trophic interactions, bottom-up processes, accounting for ecosystem uncertainty, and stakeholder engagement in the advisory process. Nonetheless, there is room for improvement where data and knowledge are lacking. We provide some key tactical (short-term) and strategic (long-term) recommendations from our perspective on what is required to ensure the sustainable management of capelin in the circumpolar region over the coming decades.</span></span></p>","language":"English","publisher":"Springer Nature","doi":"10.1007/s11160-025-09986-z","usgsCitation":"Singh, W., Trochta, J.T., Hannah M. Murphy, H.M., McGowan, D.W., Adamack, A.T., Arimitsu, M.L., Barðarson, B., Björnsson, H., Bogstad, B., Boudreau, M., Chambers, C., Gjøsæter, H., Jansen, T., Jónsson, S.Þ., Kvamsdal, S., Lewis, R.S., Mikkelsen, N., Pedersen, T., Olafsdottir, A.H., Oostdijk, M., Silva, T., Skaret, G., Suryan, R.M., and Subbey, S., 2025, Small fish, big implications: Considerations for an ecosystem approach to capelin fisheries management: Reviews in Fish Biology and Fisheries, v. 35, p. 1899-1934, https://doi.org/10.1007/s11160-025-09986-z.","productDescription":"36 p.","startPage":"1899","endPage":"1934","ipdsId":"IP-173579","costCenters":[{"id":65299,"text":"Alaska Science Center Ecosystems","active":true,"usgs":true}],"links":[{"id":502063,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1007/s11160-025-09986-z","text":"Publisher Index Page"},{"id":501975,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"35","noUsgsAuthors":false,"publicationDate":"2025-09-06","publicationStatus":"PW","contributors":{"authors":[{"text":"Singh, Warsha","contributorId":368963,"corporation":false,"usgs":false,"family":"Singh","given":"Warsha","affiliations":[{"id":40381,"text":"Marine and Freshwater Research Institute, Iceland","active":true,"usgs":false}],"preferred":false,"id":958188,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Trochta, John T.","contributorId":368964,"corporation":false,"usgs":false,"family":"Trochta","given":"John","middleInitial":"T.","affiliations":[{"id":87684,"text":"2Institute of Marine Research, Norway","active":true,"usgs":false}],"preferred":false,"id":958189,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hannah M. Murphy, Hannah M.","contributorId":368965,"corporation":false,"usgs":false,"family":"Hannah M. Murphy","given":"Hannah","middleInitial":"M.","affiliations":[{"id":87685,"text":"DFO Newfoundland","active":true,"usgs":false}],"preferred":false,"id":958190,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McGowan, David W.","contributorId":368966,"corporation":false,"usgs":false,"family":"McGowan","given":"David","middleInitial":"W.","affiliations":[{"id":36803,"text":"NOAA","active":true,"usgs":false}],"preferred":false,"id":958191,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Adamack, Aaron T.","contributorId":368967,"corporation":false,"usgs":false,"family":"Adamack","given":"Aaron","middleInitial":"T.","affiliations":[{"id":87686,"text":"3Northwest Atlantic Fisheries Centre DFO","active":true,"usgs":false}],"preferred":false,"id":958192,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Arimitsu, Mayumi L. 0000-0001-6982-2238 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Economics","active":true,"usgs":false}],"preferred":false,"id":958207,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Silva, Teresa","contributorId":368982,"corporation":false,"usgs":false,"family":"Silva","given":"Teresa","affiliations":[{"id":87687,"text":"1Marine and Freshwater Research Institute","active":true,"usgs":false}],"preferred":false,"id":958208,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Skaret, Georg","contributorId":368983,"corporation":false,"usgs":false,"family":"Skaret","given":"Georg","affiliations":[{"id":87684,"text":"2Institute of Marine Research, Norway","active":true,"usgs":false}],"preferred":false,"id":958209,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"Suryan, Robert M.","contributorId":368984,"corporation":false,"usgs":false,"family":"Suryan","given":"Robert","middleInitial":"M.","affiliations":[{"id":36803,"text":"NOAA","active":true,"usgs":false}],"preferred":false,"id":958210,"contributorType":{"id":1,"text":"Authors"},"rank":23},{"text":"Subbey, Sam","contributorId":368985,"corporation":false,"usgs":false,"family":"Subbey","given":"Sam","affiliations":[{"id":87684,"text":"2Institute of Marine Research, Norway","active":true,"usgs":false}],"preferred":false,"id":958211,"contributorType":{"id":1,"text":"Authors"},"rank":24}]}}
,{"id":70272968,"text":"70272968 - 2025 - Evaluation of polymer-based dust palliatives in soil and stormwater runoff in an arid environment","interactions":[],"lastModifiedDate":"2025-12-11T15:06:46.86876","indexId":"70272968","displayToPublicDate":"2025-09-06T08:52:06","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":887,"text":"Archives of Environmental Contamination and Toxicology","active":true,"publicationSubtype":{"id":10}},"title":"Evaluation of polymer-based dust palliatives in soil and stormwater runoff in an arid environment","docAbstract":"<p><span>Dust palliatives are used to reduce fugitive dust in areas susceptible to erosion by wind and rain. In 2015, the Bureau of Land Management (BLM) temporarily approved the use of polymer-based dust palliatives during the construction and operation of a solar energy facility and, in 2019, on a mining access road in Clark County, Nevada. The areas treated with palliative are habitat to the desert tortoise. The desert tortoise consumes water opportunistically from puddles, saturated soils, or by the collection of precipitation on their carapaces. Since little is known about the toxicity of polymeric substances to the desert tortoise, the BLM is concerned with the exposure of the desert tortoise to palliative in stormwater runoff. The BLM collaborated with the US Geological Survey (USGS) to evaluate the transport of butyl acrylate vinyl acetate (BA-VA), the copolymer ingredient in the dust palliatives applied in the study, away from areas of application. BA-VA concentrations were measured in soils treated with palliative up to 90&nbsp;days post-treatment, after which the copolymer became undetectable (&lt; 0.55&nbsp;mg/g). BA-VA concentrations in all stormwater samples within and outside treated areas were consistently below detection (&lt; 0.20&nbsp;mg/mL). Although stormwater and treated soils eroded from the solar facility application area were found to have BA-VA concentrations below detection (&lt; 0.55&nbsp;mg/g), it is likely that some BA-VA (parent or degradation product) was transported with suspended material. It is also&nbsp;likely that the amount of BA-VA transported away from areas of application was a small fraction of that applied.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s00244-025-01153-6","usgsCitation":"Paul, A., Orozco-Whitaker, E., Shamsuddin, S., Xiang, P., and Landry, E., 2025, Evaluation of polymer-based dust palliatives in soil and stormwater runoff in an arid environment: Archives of Environmental Contamination and Toxicology, v. 89, p. 239-251, https://doi.org/10.1007/s00244-025-01153-6.","productDescription":"13 p.","startPage":"239","endPage":"251","ipdsId":"IP-099316","costCenters":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"links":[{"id":497381,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1007/s00244-025-01153-6","text":"Publisher Index Page"},{"id":497322,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Nevada","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -115.6,\n              36.25\n            ],\n            [\n              -115.6,\n              35.25\n            ],\n            [\n              -114.5,\n              35.25\n            ],\n            [\n              -114.5,\n              36.25\n            ],\n            [\n              -115.6,\n              36.25\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"89","noUsgsAuthors":false,"publicationDate":"2025-09-06","publicationStatus":"PW","contributors":{"authors":[{"text":"Paul, Angela 0000-0003-3909-1598","orcid":"https://orcid.org/0000-0003-3909-1598","contributorId":202784,"corporation":false,"usgs":true,"family":"Paul","given":"Angela","affiliations":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"preferred":true,"id":951923,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Orozco-Whitaker, Erin L. 0000-0002-7453-0077","orcid":"https://orcid.org/0000-0002-7453-0077","contributorId":350873,"corporation":false,"usgs":true,"family":"Orozco-Whitaker","given":"Erin L.","affiliations":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"preferred":true,"id":951924,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Shamsuddin, S.","contributorId":350874,"corporation":false,"usgs":false,"family":"Shamsuddin","given":"S.","affiliations":[{"id":83860,"text":"Polyanalytik, Inc.","active":true,"usgs":false}],"preferred":false,"id":951958,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Xiang, Peng","contributorId":201270,"corporation":false,"usgs":false,"family":"Xiang","given":"Peng","email":"","affiliations":[],"preferred":false,"id":951959,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Landry, Eric","contributorId":363771,"corporation":false,"usgs":false,"family":"Landry","given":"Eric","affiliations":[],"preferred":false,"id":951960,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70271724,"text":"70271724 - 2025 - Seasonal variation in bay-marsh sediment exchange through a back-barrier salt marsh tidal creek","interactions":[],"lastModifiedDate":"2025-12-01T16:37:59.435925","indexId":"70271724","displayToPublicDate":"2025-09-05T09:08:30","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2620,"text":"Limnology and Oceanography","active":true,"publicationSubtype":{"id":10}},"title":"Seasonal variation in bay-marsh sediment exchange through a back-barrier salt marsh tidal creek","docAbstract":"<p><span>Salt marsh resilience to sea-level rise largely depends on the balance of sediment exchanges with surrounding bays. In this study, we investigate mechanisms that determine residual sediment fluxes using continuous measurements of bay-marsh sediment exchange conducted in a tidal creek spanning 13 months (753 tidal cycles) in an intertidal marsh recently subsidized with sediment via thin-layer placement. The maximum water level in each tidal cycle varied over seasonal and fortnightly timescales and was driven by a combination of the seasonal cycle in mean sea level (maximum in September, minimum in January) and the fortnightly spring-neap cycle. Residual water fluxes tended to be ebb-directed during overbank tides, possibly due to water crossing creekshed boundaries in the intertidal zone when water levels were sufficiently high. Sediment concentrations on the ebb of overbank tides exceeded those of their corresponding floods, but only for tidal cycles in which water temperatures exceeded 14°C. The interaction of these dynamics resulted in over 90% of the net sediment export from the creek occurring during overbank tides during warmer months—conditions met in 30% of the observed tidal cycles. These findings exemplify the importance of accounting for seasonality in sediment fluxes when assessing sediment budgets of salt marshes and illustrate how sediment budgets assessed with shorter duration datasets may exhibit seasonal bias. Additionally, they suggest that sediment retention for thin-layer sediment placement projects may be high over the course of the first year after sediment subsidies are deployed.</span></p>","language":"English","publisher":"Association for the Sciences of Limnology and Oceanography","doi":"10.1002/lno.70193","usgsCitation":"Snedden, G., and Smith, S.J., 2025, Seasonal variation in bay-marsh sediment exchange through a back-barrier salt marsh tidal creek: Limnology and Oceanography, v. 70, no. 11, p. 3143-3154, https://doi.org/10.1002/lno.70193.","productDescription":"12 p.","startPage":"3143","endPage":"3154","ipdsId":"IP-173834","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":496142,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/lno.70193","text":"Publisher Index Page"},{"id":495837,"rank":2,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"New Jersey","otherGeospatial":"Gull Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -74.78334779722779,\n              39.09081569270708\n            ],\n            [\n              -74.78334779722779,\n              39.071155740770365\n            ],\n            [\n              -74.76930530056791,\n              39.071155740770365\n            ],\n            [\n              -74.76930530056791,\n              39.09081569270708\n            ],\n            [\n              -74.78334779722779,\n              39.09081569270708\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"70","issue":"11","noUsgsAuthors":false,"publicationDate":"2025-09-05","publicationStatus":"PW","contributors":{"authors":[{"text":"Snedden, Gregg A. 0000-0001-7821-3709","orcid":"https://orcid.org/0000-0001-7821-3709","contributorId":212275,"corporation":false,"usgs":true,"family":"Snedden","given":"Gregg","middleInitial":"A.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":949207,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Smith, S. Jarrell 0000-0002-8649-5598","orcid":"https://orcid.org/0000-0002-8649-5598","contributorId":361683,"corporation":false,"usgs":false,"family":"Smith","given":"S.","middleInitial":"Jarrell","affiliations":[{"id":37304,"text":"U.S. Army Engineer Research and Development Center","active":true,"usgs":false}],"preferred":false,"id":949208,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70271907,"text":"70271907 - 2025 - Mitigating flood risks in urban estuaries: Tidal dynamics, shoreline hardening, nature-based solutions, and floodgates in San Francisco Bay","interactions":[],"lastModifiedDate":"2025-09-24T15:53:03.924386","indexId":"70271907","displayToPublicDate":"2025-09-05T08:45:51","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":8957,"text":"Journal of Waterway, Port, Coastal, and Ocean Engineering","active":true,"publicationSubtype":{"id":10}},"title":"Mitigating flood risks in urban estuaries: Tidal dynamics, shoreline hardening, nature-based solutions, and floodgates in San Francisco Bay","docAbstract":"<p><span>Hydrodynamic models are valuable tools for understanding the primary factors influencing daily and peak water levels and for guiding discussions on potential adaptation strategies for managing flood risk in coastal areas. This analysis uses the Delft3D San Francisco Bay-Delta Community Model to simulate water levels and incorporates the effects of a number of adaptation measures in the urban San Francisco Bay estuary, California. In particular, we examine the influence of shoreline hardening, nature-based solutions, and subregional floodgates on regional water levels. The result shows that under present conditions, tidal amplification is responsible for generating a wide distribution of extreme water levels across San Francisco Bay. Tidal amplification is found to decrease under sea level rise, thereby producing a relative damping effect on extremes. A comparison of different shoreline scenarios demonstrates that hard frontal shorelines result in higher tidal amplification, whereas restored (soft) shorelines lower amplification. The current shoreline configuration has both hard and soft characteristics and results in an intermediate tidal response. In some areas, wetland restoration reduces extreme water levels by as much as 20 cm, whereas hard-shoreline addition elevates them by as much as 10 cm for 1.5 m of sea level rise. Furthermore, local floodgates can significantly reduce high water levels without major adverse effects elsewhere in San Francisco Bay. These findings point toward the justification for a range of adaptive measures across political boundaries, weighing hard and soft options in addressing the mounting danger of sea level rise.</span></p>","language":"English","publisher":"American Society of Civil Engineers","doi":"10.1061/JWPED5.WWENG-2342","usgsCitation":"Nederhoff, K., Saleh, R., Barnard, P., and Stacey, M.T., 2025, Mitigating flood risks in urban estuaries: Tidal dynamics, shoreline hardening, nature-based solutions, and floodgates in San Francisco Bay: Journal of Waterway, Port, Coastal, and Ocean Engineering, v. 151, no. 6, 04025031, 19 p., https://doi.org/10.1061/JWPED5.WWENG-2342.","productDescription":"04025031, 19 p.","ipdsId":"IP-176674","costCenters":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":496162,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1061/jwped5.wweng-2342","text":"Publisher Index Page"},{"id":496022,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"San Francisco Bay","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -122.71980135286915,\n              38.31126858304765\n            ],\n            [\n              -122.71980135286915,\n              37.4059191605038\n            ],\n            [\n              -121.71348182307679,\n              37.4059191605038\n            ],\n            [\n              -121.71348182307679,\n              38.31126858304765\n            ],\n            [\n              -122.71980135286915,\n              38.31126858304765\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"151","issue":"6","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Nederhoff, Kees 0000-0003-0552-3428","orcid":"https://orcid.org/0000-0003-0552-3428","contributorId":334091,"corporation":false,"usgs":false,"family":"Nederhoff","given":"Kees","affiliations":[{"id":39963,"text":"Deltares-USA","active":true,"usgs":false}],"preferred":true,"id":949331,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Saleh, Rohin","contributorId":265891,"corporation":false,"usgs":false,"family":"Saleh","given":"Rohin","email":"","affiliations":[{"id":54818,"text":"Alameda Flood Control District","active":true,"usgs":false}],"preferred":false,"id":949332,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Barnard, Patrick L. 0000-0003-1414-6476 pbarnard@usgs.gov","orcid":"https://orcid.org/0000-0003-1414-6476","contributorId":147147,"corporation":false,"usgs":true,"family":"Barnard","given":"Patrick L.","email":"pbarnard@usgs.gov","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":949333,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stacey, Mark T.","contributorId":360868,"corporation":false,"usgs":false,"family":"Stacey","given":"Mark","middleInitial":"T.","affiliations":[{"id":6609,"text":"UC Berkeley","active":true,"usgs":false}],"preferred":false,"id":949334,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70273047,"text":"70273047 - 2025 - Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web","interactions":[],"lastModifiedDate":"2025-12-12T16:46:35.692791","indexId":"70273047","displayToPublicDate":"2025-09-04T09:39:53","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1465,"text":"Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web","docAbstract":"<p><span id=\"_mce_caret\" data-mce-bogus=\"1\" data-mce-type=\"format-caret\"><span>Invasive species are drivers of ecological change with the potential to reshape the structure and function of terrestrial and aquatic ecosystems. The invasive flathead catfish (</span><i>Pylodictis olivaris</i><span>) is an opportunistic predator that has established a rapidly growing population in the Susquehanna River, Pennsylvania, USA, since they were first detected in 2002. Although the predatory effects of invasive catfishes on native fish communities have been documented, the effects of invasion on riverine food webs are poorly understood. This study quantified the effects of invasive flathead catfish on the trophic position (TP) and isotopic niche of the river's food web by comparing invaded and non-invaded sites. In addition to flathead catfish, the food web components examined included crayfish, minnows, and two ecologically and socioeconomically important fish species: the smallmouth bass (</span><i>Micropterus dolomieu</i><span>) and channel catfish (</span><i>Ictalurus punctatus</i><span>). We found that flathead catfish occupied the highest TP, with a posterior mean TP of 3.08 (95% credible interval = [2.71, 3.42]), exceeding that of the two resident fish predators, the smallmouth bass and channel catfish. The TP of the resident channel catfish, which occupies a similar ecological niche, declined after flathead catfish invasion. In fact, there was a 0.92 posterior probability that channel catfish TP was lower in invaded sites than at non-invaded sites. Using a Bayesian bivariate ellipses analysis, we found overwhelming evidence of isotopic niche expansion and overlap for all components of the food web in the presence of flathead catfish. These findings support the “trophic disruption hypothesis,” where an introduced species prompts resident species to change diets in an attempt to avoid competition and predation following invasion. Our results indicate that flathead catfish invasion is altering food web structure and energy flow in a large riverine ecosystem and contributes to the breadth of knowledge regarding how ecosystems may respond to the introduction of a large predatory fish species.</span></span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecy.70180","usgsCitation":"Hodgson, O.C., Stark, S., Schall, M.K., Smith, G.D., Smalling, K., and Wagner, T., 2025, Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web: Ecology, v. 106, no. 9, e70180, 15 p., https://doi.org/10.1002/ecy.70180.","productDescription":"e70180, 15 p.","ipdsId":"IP-172847","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":497708,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecy.70180","text":"Publisher Index Page"},{"id":497484,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Pennsylvania","otherGeospatial":"Susquehanna River, West Branch Susquehanna River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -77.43310562520305,\n              40.79216536591906\n            ],\n            [\n              -77.43310562520305,\n              39.74998567182175\n            ],\n            [\n              -76.11010271256676,\n              39.74998567182175\n            ],\n            [\n              -76.11010271256676,\n              40.79216536591906\n            ],\n            [\n              -77.43310562520305,\n              40.79216536591906\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"106","issue":"9","noUsgsAuthors":false,"publicationDate":"2025-09-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Hodgson, Olivia C.","contributorId":363985,"corporation":false,"usgs":false,"family":"Hodgson","given":"Olivia","middleInitial":"C.","affiliations":[{"id":6738,"text":"The Pennsylvania State University","active":true,"usgs":false}],"preferred":false,"id":952151,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Stark, Sydney","contributorId":363987,"corporation":false,"usgs":false,"family":"Stark","given":"Sydney","affiliations":[{"id":6738,"text":"The Pennsylvania State University","active":true,"usgs":false}],"preferred":false,"id":952152,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schall, Megan K.","contributorId":363989,"corporation":false,"usgs":false,"family":"Schall","given":"Megan","middleInitial":"K.","affiliations":[{"id":6738,"text":"The Pennsylvania State University","active":true,"usgs":false}],"preferred":false,"id":952153,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Smith, Geoffrey D.","contributorId":363991,"corporation":false,"usgs":false,"family":"Smith","given":"Geoffrey","middleInitial":"D.","affiliations":[{"id":36966,"text":"Pennsylvania Fish and Boat Commission","active":true,"usgs":false}],"preferred":false,"id":952154,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Smalling, Kelly 0000-0002-1214-4920","orcid":"https://orcid.org/0000-0002-1214-4920","contributorId":221234,"corporation":false,"usgs":true,"family":"Smalling","given":"Kelly","affiliations":[{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true}],"preferred":true,"id":952155,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Wagner, Tyler 0000-0003-1726-016X twagner@usgs.gov","orcid":"https://orcid.org/0000-0003-1726-016X","contributorId":218091,"corporation":false,"usgs":true,"family":"Wagner","given":"Tyler","email":"twagner@usgs.gov","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":952156,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70271315,"text":"dr1215 - 2025 - Framework developed for geomorphic mapping of Fern Ridge Lake, Oregon, 2023","interactions":[],"lastModifiedDate":"2026-02-03T15:20:52.051701","indexId":"dr1215","displayToPublicDate":"2025-09-04T09:21:48","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":9318,"text":"Data Report","code":"DR","onlineIssn":"2771-9448","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1215","displayTitle":"Framework Developed for Geomorphic Mapping of Fern Ridge Lake, Oregon, 2023","title":"Framework developed for geomorphic mapping of Fern Ridge Lake, Oregon, 2023","docAbstract":"<p>The construction and operation of large reservoirs in the Willamette River Basin, Oregon, influences important cultural, biological, and other natural or economic resources in affected river corridors. The present-day landforms and cover within the reservoirs have been shaped by a variety of processes, including the pre-dam valley setting and geomorphic processes related to dam operations. Maps of reservoir geomorphic process domains, landforms, and cover provide a foundation for understanding how erosion and deposition processes in or near the reservoirs may affect cultural resources. Detailed geomorphic mapping of Fern Ridge Lake in 2023 provides a basis for evaluating geomorphic processes and patterns of sediment transfer within the reservoir. These processes are related to geomorphic and hydroclimatic conditions as well as annual lake level fluctuation for seasonal flood-control operations. This geomorphic mapping also provides an inventory of existing landforms from which to evaluate the spatial and temporal geomorphic change over time. Digital maps based on high-resolution digital surface models and orthophotographs acquired during low-pool conditions in 2023 extend over an area of about 30 square kilometers (km) upstream of the Fern Ridge Dam. The mapping framework has 3 main components consisting of several subtypes: 5 process domains, 18 landforms, and 7 cover categories. The overarching classification structure is tied to the process domains, which correspond to dissimilar regions of the reservoir that have distinct landforms and broadly similar suites of geomorphic processes. This document describes the geomorphic mapping framework for the reservoir at Fern Ridge Lake and provides mapping unit descriptions including delineation criteria, hypothesized formation processes inferred from remote-sensing and field observations and the literature, and relevance during drawdown operations.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/dr1215","collaboration":"Prepared in cooperation with the U.S. Army Corps of Engineers","usgsCitation":"Keith, M.K., and Bervid, H.D., 2025, Framework developed for geomorphic mapping of Fern Ridge Lake, Oregon, 2023: U.S. Geological Survey Data Report 1215, 33 p., https://doi.org/10.3133/dr1215.","productDescription":"Report: viii, 33 p.; Data Release","onlineOnly":"Y","ipdsId":"IP-160706","costCenters":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"links":[{"id":496027,"rank":7,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_118829.htm","linkFileType":{"id":5,"text":"html"}},{"id":495173,"rank":6,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/dr/1215/dr1215.XML"},{"id":495168,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/dr/1215/coverthb.jpg"},{"id":495169,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/dr/1215/dr1215.pdf","text":"Report","size":"9.8 MB","linkFileType":{"id":1,"text":"pdf"},"description":"DR 1215"},{"id":495170,"rank":3,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/dr1215/full","text":"Report","linkFileType":{"id":5,"text":"html"},"description":"DR 1215"},{"id":495171,"rank":4,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P13MHC5P","text":"USGS data release","description":"USGS data release","linkHelpText":"Geomorphic Mapping of Fern Ridge Lake, Oregon, 2023"},{"id":495172,"rank":5,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/dr/1215/images"}],"country":"United States","state":"Oregon","otherGeospatial":"Fern Ridge Lake","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -123.36193413601275,\n              44.13431042059929\n            ],\n            [\n              -123.36193413601275,\n              44.0351205618081\n            ],\n            [\n              -123.23640004823704,\n              44.0351205618081\n            ],\n            [\n              -123.23640004823704,\n              44.13431042059929\n            ],\n            [\n              -123.36193413601275,\n              44.13431042059929\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_or@usgs.gov\" data-mce-href=\"mailto:dc_or@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/or-water\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/or-water\">Oregon Water Science Center</a><br>U.S. Geological Survey<br>601 SW 2nd Avenue, Suite 1950<br>Portland, OR 97204</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Geomorphic Mapping Methods</li><li>Summary</li><li>References Cited</li></ul>","publishedDate":"2025-09-04","noUsgsAuthors":false,"publicationDate":"2025-09-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Keith, Mackenzie K. 0000-0002-7239-0576 mkeith@usgs.gov","orcid":"https://orcid.org/0000-0002-7239-0576","contributorId":196963,"corporation":false,"usgs":true,"family":"Keith","given":"Mackenzie","email":"mkeith@usgs.gov","middleInitial":"K.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":947966,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bervid, Heather D. 0000-0001-9632-885X","orcid":"https://orcid.org/0000-0001-9632-885X","contributorId":176732,"corporation":false,"usgs":true,"family":"Bervid","given":"Heather","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":947967,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70272035,"text":"70272035 - 2025 - Placing environmental DNA monitoring for new detections into perspective: Fishes in the Milwaukee River, Wisconsin","interactions":[],"lastModifiedDate":"2025-11-13T16:22:50.550546","indexId":"70272035","displayToPublicDate":"2025-09-04T09:12:47","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2508,"text":"Journal of Wildlife Management","active":true,"publicationSubtype":{"id":10}},"title":"Placing environmental DNA monitoring for new detections into perspective: Fishes in the Milwaukee River, Wisconsin","docAbstract":"<p>Invasive species management frameworks, such as the early detection of and rapid response to invasive species, use monitoring programs to detect new species occurrences. Resource managers use environmental DNA (eDNA) as one tool for these monitoring programs. An eDNA detection in a new location may lack perspective for resource managers and researchers because of the rarity of potential invaders and the randomness in their dispersal and detection. An example monitoring program is the eDNA-based sampling approach used by the U.S. Fish and Wildlife Service for bigheaded carps <i>Hypophthalmichthys</i> spp. in the upper Mississippi River and Great Lakes Basins that collects hundreds of water samples per event. The U.S. Fish and Wildlife Service detected a single positive sample for Bighead Carp <i>Hypophthalmichthys nobilis</i> during the spring 2021 sampling event in the Kinnickinnic River within the Milwaukee River Basin, and detected a second single positive sample for bigheaded carps during the fall 2021 sampling event in the Milwaukee River. The U.S. Fish and Wildlife Service did not detect any bigheaded carps in previous years (2015 to 2020) or in either the spring or fall 2022 sampling events. These detections lacked perspective, such as detection numbers for other species. We reanalyzed the 2021 and 2022 samples for four existing species of fish: two fairly common species (Common Carp <i>Cyprinus carpio</i> and Gizzard Shad <i>Dorosoma cepedianum</i>) and two fairly rare species (Burbot <i>Lota lota</i> and Grass Carp <i>Ctenopharyngodon idella</i>). We detected Common Carp during all four sampling events, Gizzard Shad during three of four sampling events, and Burbot and Grass Carp during two of four sampling events. These results demonstrated that current sampling efforts could detect other species, and bigheaded carp eDNA was not common in the Milwaukee River compared to these species. More specifically, this finding indicates bigheaded carp eDNA detections are as rare as, or rarer than, Grass Carp eDNA detections, a recent invader to the basin. Our findings also demonstrated how reanalyzing eDNA samples after positive detections for targeted species can help managers understand the context of the detections and provide perspective for the relative abundance of the targeted species. Additionally, our results highlight the importance of completing long-term eDNA-based monitoring rather than a single sampling or inventory event. These detections may have been missed in a single year or sampling event, whereas a multiyear monitoring program provides an opportunity to observe trends through time.</p>","language":"English","publisher":"Wiley","doi":"10.1002/jwmg.70102","usgsCitation":"Erickson, R.A., DeHaan, P.W., Frohnauer, N.K., Hayer, C., Oettinger, K., Tajjioui, T., Von Ruden, K.M., Willner, H., and Spear, S.F., 2025, Placing environmental DNA monitoring for new detections into perspective: Fishes in the Milwaukee River, Wisconsin: Journal of Wildlife Management, v. 89, e70102, 14 p., https://doi.org/10.1002/jwmg.70102.","productDescription":"e70102, 14 p.","ipdsId":"IP-169285","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":496403,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wisconsin","otherGeospatial":"Milwaukee River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -88.85610165027764,\n              43.71442287244696\n            ],\n            [\n              -88.85610165027764,\n              42.70910667171606\n            ],\n            [\n              -87.8504051385311,\n              42.70910667171606\n            ],\n            [\n              -87.8504051385311,\n              43.71442287244696\n            ],\n            [\n              -88.85610165027764,\n              43.71442287244696\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"89","noUsgsAuthors":false,"publicationDate":"2025-09-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Erickson, Richard A. 0000-0003-4649-482X rerickson@usgs.gov","orcid":"https://orcid.org/0000-0003-4649-482X","contributorId":5455,"corporation":false,"usgs":true,"family":"Erickson","given":"Richard","email":"rerickson@usgs.gov","middleInitial":"A.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":949790,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"DeHaan, Patrick W.","contributorId":361996,"corporation":false,"usgs":false,"family":"DeHaan","given":"Patrick","middleInitial":"W.","affiliations":[{"id":84143,"text":"U.S. Fish and Wildlife Service, Whitney Genetics Laboratory","active":true,"usgs":false}],"preferred":false,"id":949791,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Frohnauer, Nicholas K.","contributorId":361997,"corporation":false,"usgs":false,"family":"Frohnauer","given":"Nicholas","middleInitial":"K.","affiliations":[{"id":84141,"text":"U.S. Fish and Wildlife Service, Midwest Regional 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Center","active":true,"usgs":true}],"preferred":true,"id":949795,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Von Ruden, Kyle M.","contributorId":361998,"corporation":false,"usgs":false,"family":"Von Ruden","given":"Kyle","middleInitial":"M.","affiliations":[{"id":84143,"text":"U.S. Fish and Wildlife Service, Whitney Genetics Laboratory","active":true,"usgs":false}],"preferred":false,"id":949796,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Willner, Hailey M.","contributorId":352253,"corporation":false,"usgs":false,"family":"Willner","given":"Hailey M.","affiliations":[{"id":84142,"text":"Former contractor, Upper Midwest Environmental Sciences Center","active":true,"usgs":false}],"preferred":false,"id":949797,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Spear, Stephen Frank 0000-0001-8351-9382","orcid":"https://orcid.org/0000-0001-8351-9382","contributorId":293162,"corporation":false,"usgs":true,"family":"Spear","given":"Stephen","email":"","middleInitial":"Frank","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":949798,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70271697,"text":"70271697 - 2025 - Post-hatching maternal attendance in wild Burmese Pythons in southern Florida","interactions":[],"lastModifiedDate":"2025-09-19T14:14:34.125355","indexId":"70271697","displayToPublicDate":"2025-09-04T09:09:21","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1899,"text":"Herpetology Notes","active":true,"publicationSubtype":{"id":10}},"title":"Post-hatching maternal attendance in wild Burmese Pythons in southern Florida","docAbstract":"<p>No abstract available.</p>","language":"English","publisher":"Societas Europaea Herpetologica","usgsCitation":"Guzy, J.C., Sandfoss, M.R., Rentof, J.M., Baird-Lujano, J.E., Aponte Santiago, G., Torres, J.A., McBride, L.M., Metcalf, M., Kissel, A.M., Romagosa, C., Yackel Adams, A.A., Welty, B.L., Miller, M.A., McCollister, M.F., Mazzotti, F.J., and Hart, K., 2025, Post-hatching maternal attendance in wild Burmese Pythons in southern Florida: Herpetology Notes, v. 18, p. 849-856.","productDescription":"8 p.","startPage":"849","endPage":"856","ipdsId":"IP-173241","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":495783,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":495771,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://herpetologynotes.org/index.php/hn/article/view/72"}],"country":"United States","state":"Florida","volume":"18","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Guzy, Jacquelyn C. 0000-0003-2648-398X","orcid":"https://orcid.org/0000-0003-2648-398X","contributorId":288520,"corporation":false,"usgs":true,"family":"Guzy","given":"Jacquelyn","email":"","middleInitial":"C.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research 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E.","contributorId":361588,"corporation":false,"usgs":false,"family":"Baird-Lujano","given":"Judith","middleInitial":"E.","affiliations":[{"id":83764,"text":"Cherokee Nation System Solutions, contracted to the U.S. Geological Survey","active":true,"usgs":false}],"preferred":false,"id":949050,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Aponte Santiago, Genesis 0009-0008-3225-8619","orcid":"https://orcid.org/0009-0008-3225-8619","contributorId":361589,"corporation":false,"usgs":true,"family":"Aponte Santiago","given":"Genesis","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":949051,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Torres, Jose A.","contributorId":361590,"corporation":false,"usgs":false,"family":"Torres","given":"Jose","middleInitial":"A.","affiliations":[{"id":86315,"text":"University of Florida, Department of Wildlife Ecology and 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0000-0002-6346-7455","orcid":"https://orcid.org/0000-0002-6346-7455","contributorId":334356,"corporation":false,"usgs":true,"family":"Kissel","given":"Amanda","email":"","middleInitial":"Marie","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":949055,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Romagosa, Christina 0000-0003-1900-5648","orcid":"https://orcid.org/0000-0003-1900-5648","contributorId":299306,"corporation":false,"usgs":false,"family":"Romagosa","given":"Christina","email":"","affiliations":[{"id":36221,"text":"University of Florida","active":true,"usgs":false}],"preferred":false,"id":949056,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Yackel Adams, Amy A. 0000-0002-7044-8447 yackela@usgs.gov","orcid":"https://orcid.org/0000-0002-7044-8447","contributorId":3116,"corporation":false,"usgs":true,"family":"Yackel Adams","given":"Amy","email":"yackela@usgs.gov","middleInitial":"A.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":949057,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Welty, Brandon L.","contributorId":361593,"corporation":false,"usgs":false,"family":"Welty","given":"Brandon","middleInitial":"L.","affiliations":[{"id":86317,"text":"University of Florida, Department of Wildlife Ecology and Conservation, Fort Lauderdale Research and Education Center","active":true,"usgs":false}],"preferred":false,"id":949058,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Miller, Melissa A.","contributorId":361594,"corporation":false,"usgs":false,"family":"Miller","given":"Melissa","middleInitial":"A.","affiliations":[{"id":86317,"text":"University of Florida, Department of Wildlife Ecology and Conservation, Fort Lauderdale Research and Education 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,{"id":70272150,"text":"70272150 - 2025 - Exploring the importance of metapopulation dynamics with population control strategies for invasive silver carp in the upper Mississippi River","interactions":[],"lastModifiedDate":"2025-11-18T16:02:06.570594","indexId":"70272150","displayToPublicDate":"2025-09-04T08:56:17","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2508,"text":"Journal of Wildlife Management","active":true,"publicationSubtype":{"id":10}},"title":"Exploring the importance of metapopulation dynamics with population control strategies for invasive silver carp in the upper Mississippi River","docAbstract":"<p><span>Invasive bigheaded carps (Bighead Carp&nbsp;</span><i>Hypophthalmichthys nobilis</i><span>, Silver Carp&nbsp;</span><i>Hypophthalmichthys molitrix</i><span>, and their hybrids&nbsp;</span><i>Hypophthalmichthys</i><span>&nbsp;spp.) currently infest the Mississippi River Basin. Bigheaded carps can outcompete native species in invaded waters and can also transform the surrounding environment. Currently, resource managers seek to limit the population abundance of bigheaded carps and their range expansion into additional regions of the Upper Mississippi River (UMR) but lack a tool to evaluate different control strategies. Here, we present an application of a Silver Carp spatial population model in the UMR to fill this gap. We used the model to explore how simulated control strategies could affect Silver Carp metapopulation dynamics. More specifically, we assessed and compared the importance of movement deterrents, removal locations, and recruitment areas on Silver Carp population abundances across the UMR. Strategies that included a combination of removal efforts and deterrents resulted in the largest decreases in Silver Carp abundance in the upper pools of the UMR. Furthermore, scenarios that targeted source populations of Silver Carp rather than sink populations resulted in larger decreases in Silver Carp abundance at the invasion front. The effectiveness of these combined simulated strategies also depended on the location of Silver Carp recruitment. Our work suggests that an understanding of Silver Carp metapopulation dynamics may be important for control efforts and could help to inform the management of Silver Carp in the UMR.</span></p>","language":"English","publisher":"The Wildlife Society","doi":"10.1002/jwmg.70101","usgsCitation":"Frame, K., Sandland, G.J., Labuzzetta, C.J., Loppnow, G.L., Stanton, J.C., Kao, Y., and Erickson, R.A., 2025, Exploring the importance of metapopulation dynamics with population control strategies for invasive silver carp in the upper Mississippi River: Journal of Wildlife Management, v. 89, no. 8, e70101, 19 p., https://doi.org/10.1002/jwmg.70101.","productDescription":"e70101, 19 p.","ipdsId":"IP-169626","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":496591,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Illinois, Iowa, Minnesota, Missouri, Wisconsin","otherGeospatial":"upper Mississippi River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -92.42515752205935,\n              44.547455467183056\n            ],\n            [\n              -92.42515752205935,\n              39.31069113760515\n            ],\n            [\n              -89.49821279072381,\n              39.31069113760515\n            ],\n            [\n              -89.49821279072381,\n              44.547455467183056\n            ],\n            [\n              -92.42515752205935,\n              44.547455467183056\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"89","issue":"8","noUsgsAuthors":false,"publicationDate":"2025-09-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Frame, Kassidy","contributorId":362254,"corporation":false,"usgs":false,"family":"Frame","given":"Kassidy","affiliations":[{"id":47908,"text":"University of Wisconsin - La Crosse","active":true,"usgs":false}],"preferred":false,"id":950246,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Sandland, Gregory J. 0000-0002-9716-0232","orcid":"https://orcid.org/0000-0002-9716-0232","contributorId":362255,"corporation":false,"usgs":false,"family":"Sandland","given":"Gregory","middleInitial":"J.","affiliations":[{"id":47908,"text":"University of Wisconsin - La Crosse","active":true,"usgs":false}],"preferred":false,"id":950247,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Labuzzetta, Charles J. 0000-0002-6027-0120","orcid":"https://orcid.org/0000-0002-6027-0120","contributorId":332055,"corporation":false,"usgs":true,"family":"Labuzzetta","given":"Charles","email":"","middleInitial":"J.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":950248,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Loppnow, Grace L.","contributorId":362256,"corporation":false,"usgs":false,"family":"Loppnow","given":"Grace","middleInitial":"L.","affiliations":[{"id":86499,"text":"Minnesota Department of Natural Resources, Ecological and Water Resources, Saint Paul, MN","active":true,"usgs":false}],"preferred":false,"id":950249,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Stanton, Jessica C. 0000-0002-6225-3703 jcstanton@usgs.gov","orcid":"https://orcid.org/0000-0002-6225-3703","contributorId":5634,"corporation":false,"usgs":true,"family":"Stanton","given":"Jessica","email":"jcstanton@usgs.gov","middleInitial":"C.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":950250,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kao, Yu-Chun","contributorId":35626,"corporation":false,"usgs":false,"family":"Kao","given":"Yu-Chun","affiliations":[{"id":6649,"text":"University of Michigan, School of Natural Resources and Environment","active":true,"usgs":false}],"preferred":false,"id":950251,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Erickson, Richard A. 0000-0003-4649-482X rerickson@usgs.gov","orcid":"https://orcid.org/0000-0003-4649-482X","contributorId":5455,"corporation":false,"usgs":true,"family":"Erickson","given":"Richard","email":"rerickson@usgs.gov","middleInitial":"A.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":950252,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70271493,"text":"70271493 - 2025 - Bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream and riparian food web contaminated by food processing wastewater","interactions":[],"lastModifiedDate":"2025-09-18T15:00:15.100545","indexId":"70271493","displayToPublicDate":"2025-09-04T07:47:37","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1565,"text":"Environmental Science & Technology","onlineIssn":"1520-5851","printIssn":"0013-936X","active":true,"publicationSubtype":{"id":10}},"title":"Bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream and riparian food web contaminated by food processing wastewater","docAbstract":"<p><span>We evaluated the bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream food web contaminated by a food processing facility. Abiotic (i.e., water, sediment, and foam) and biotic (i.e., algae, aquatic insect larvae and adults, fish, and riparian spiders) matrices were sampled upstream and downstream of the facility’s wastewater outfall. Compared with upstream, PFAS concentrations were 600-fold higher in downstream water (mean ∑</span><sub>40</sub><span>PFAS 3.67 ng mL</span><sup>–1</sup><span>&nbsp;± 0.48 (standard error)) and reflected inputs from the outfall, with 6:2 fluorotelomer sulfonate (6:2 FTS) dominating the PFAS profile. Within the aquatic food web, perfluorooctanesulfonate (PFOS) was the most biomagnified, and 6:2 FTS was the most biodiluted. In contrast, insect-mediated transfer of PFAS to riparian spiders showed trophic enrichment of 6:2 FTS and dilution of PFOS. We observed significant positive associations between phospholipid membrane-water partition coefficient (log K</span><sub>MW</sub><span>) and perfluoroalkyl carboxylate (PFCA) chain length on bioaccumulation across most biological matrices, demonstrating that these chemical parameters are predictive of PFAS bioaccumulation potential in the field. Our research reveals important differences in aquatic versus terrestrial exposure for certain PFAS and that biological processes (e.g., trophic interactions and metamorphosis) and chemical properties (e.g., chain length, log K</span><sub>MW</sub><span>, and concentration) control PFAS uptake, bioaccumulation, and transfer in linked freshwater and terrestrial ecosystems.</span></p>","language":"English","publisher":"American Chemical Society","doi":"10.1021/acs.est.5c04867","usgsCitation":"Kotalik, C.J., Hubbard, L.E., Perrotta, B.G., Walters, D.M., Kolpin, D., Gray, J.L., Zachritz, A.M., Kraus, J.M., Givens, C.E., Lamberti, G.A., and Kidd, K.A., 2025, Bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream and riparian food web contaminated by food processing wastewater: Environmental Science & Technology, v. 59, no. 36, p. 19444-19456, https://doi.org/10.1021/acs.est.5c04867.","productDescription":"13 p.","startPage":"19444","endPage":"19456","ipdsId":"IP-178202","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":495710,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"59","issue":"36","noUsgsAuthors":false,"publicationDate":"2025-09-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Kotalik, Christopher James 0000-0001-6739-6036","orcid":"https://orcid.org/0000-0001-6739-6036","contributorId":301847,"corporation":false,"usgs":true,"family":"Kotalik","given":"Christopher","email":"","middleInitial":"James","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":948954,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hubbard, Laura E. 0000-0003-3813-1500 lhubbard@usgs.gov","orcid":"https://orcid.org/0000-0003-3813-1500","contributorId":4221,"corporation":false,"usgs":true,"family":"Hubbard","given":"Laura","email":"lhubbard@usgs.gov","middleInitial":"E.","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948955,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Perrotta, Brittany G. 0000-0003-2669-3047","orcid":"https://orcid.org/0000-0003-2669-3047","contributorId":301929,"corporation":false,"usgs":true,"family":"Perrotta","given":"Brittany","middleInitial":"G.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":948956,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Walters, David M. 0000-0002-4237-2158","orcid":"https://orcid.org/0000-0002-4237-2158","contributorId":201754,"corporation":false,"usgs":true,"family":"Walters","given":"David","middleInitial":"M.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":948957,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Kolpin, Dana W. 0000-0002-3529-6505","orcid":"https://orcid.org/0000-0002-3529-6505","contributorId":205652,"corporation":false,"usgs":true,"family":"Kolpin","given":"Dana W.","affiliations":[{"id":35680,"text":"Illinois-Iowa-Missouri Water Science Center","active":true,"usgs":true},{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true},{"id":36532,"text":"Central Midwest Water Science Center","active":true,"usgs":true},{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948958,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Gray, James L. 0000-0002-0807-5635","orcid":"https://orcid.org/0000-0002-0807-5635","contributorId":205658,"corporation":false,"usgs":true,"family":"Gray","given":"James","email":"","middleInitial":"L.","affiliations":[{"id":5046,"text":"Branch of Analytical Serv (NWQL)","active":true,"usgs":true}],"preferred":true,"id":948959,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Zachritz, Alison M.","contributorId":361537,"corporation":false,"usgs":false,"family":"Zachritz","given":"Alison","middleInitial":"M.","affiliations":[{"id":39516,"text":"University of Notre Dame","active":true,"usgs":false}],"preferred":false,"id":948960,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Kraus, Johanna M. 0000-0002-9513-4129 jkraus@usgs.gov","orcid":"https://orcid.org/0000-0002-9513-4129","contributorId":4834,"corporation":false,"usgs":true,"family":"Kraus","given":"Johanna","email":"jkraus@usgs.gov","middleInitial":"M.","affiliations":[{"id":291,"text":"Fort Collins Science 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A.","contributorId":361542,"corporation":false,"usgs":false,"family":"Kidd","given":"Karen","middleInitial":"A.","affiliations":[{"id":25502,"text":"McMaster University","active":true,"usgs":false}],"preferred":false,"id":948964,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70271161,"text":"cir1552 - 2025 - The U.S. Geological Survey, the U.S. Department of Defense, and the U.S. Intelligence Community—100 years of mapping and remote sensing collaboration, 1879–1979","interactions":[],"lastModifiedDate":"2026-02-03T15:20:01.84239","indexId":"cir1552","displayToPublicDate":"2025-09-03T15:18:39","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":307,"text":"Circular","code":"CIR","onlineIssn":"2330-5703","printIssn":"1067-084X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1552","displayTitle":"The U.S. Geological Survey, the U.S. Department of Defense, and the U.S. Intelligence Community: 100 Years of Mapping and Remote Sensing Collaboration, 1879–1979","title":"The U.S. Geological Survey, the U.S. Department of Defense, and the U.S. Intelligence Community—100 years of mapping and remote sensing collaboration, 1879–1979","docAbstract":"<h1>Introduction</h1><p>The U.S. Geological Survey (USGS)—a Federal civilian agency—and U.S. military and intelligence agencies collaborate on mapping and remote sensing and have since the establishment of the USGS. The organizations exchange data and information and share technology to further their respective missions in service to the American people. Often referred to as examples of “good government” or “whole of government,” the collaboration avoids costly duplication and maximizes time and effort for the government sectors. Collaboration between these sectors started with the original mapping of the United States and evolved to include remote sensing after the advent of aerial photography and satellite imagery.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/cir1552","isbn":"978-1-4113-4627-7","programNote":"National Land Imaging Program","usgsCitation":"Young, P.M., 2025, The U.S. Geological Survey, the U.S. Department of Defense, and the U.S. Intelligence Community—100 years of mapping and remote sensing collaboration, 1879–1979: U.S. Geological Survey Circular 1552, 64 p., https://doi.org/10.3133/cir1552.","productDescription":"xi, 64 p.","numberOfPages":"64","onlineOnly":"N","ipdsId":"IP-160464","costCenters":[{"id":36171,"text":"National Civil Applications Center","active":true,"usgs":true}],"links":[{"id":495094,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/circ/1552/coverthb.jpg"},{"id":495095,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/circ/1552/cir1552.pdf","text":"Report","size":"42.4 MB","linkFileType":{"id":1,"text":"pdf"},"description":"CIRC 1552"},{"id":495096,"rank":3,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/cir1552/full","linkFileType":{"id":5,"text":"html"},"description":"CIRC 1552 HTML"},{"id":495097,"rank":4,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/circ/1552/cir1552.XML","description":"CIRC 1552 XML"},{"id":495098,"rank":5,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/circ/1552/images"}],"contact":"<p>Director, National Civil Applications Center<br>U.S. Geological Survey<br>12201 Sunrise Valley Drive, MS 562<br>Reston, VA 20192<br><a href=\"https://www.usgs.gov/programs/national-land-imaging-program\" data-mce-href=\"https://www.usgs.gov/programs/national-land-imaging-program\">https://www.usgs.gov/programs/national-land-imaging-program</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Introduction</li><li>Collaborative Relationship Evolution</li><li>Early Collaboration</li><li>War Induces Collaboration</li><li>Collaboration Between World Wars</li><li>War Inspires Cooperation</li><li>Into Outer Space</li><li>Path to Civil-Agency Use</li><li>U.S. Intelligence Community Influence on the Origins of Landsat</li><li>Civil Access Codified</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2025-09-03","noUsgsAuthors":false,"plainLanguageSummary":"<p><br data-mce-bogus=\"1\"></p>","publicationDate":"2025-09-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Young, Paul M. 0000-0002-6733-6452","orcid":"https://orcid.org/0000-0002-6733-6452","contributorId":301138,"corporation":false,"usgs":true,"family":"Young","given":"Paul","email":"","middleInitial":"M.","affiliations":[{"id":36171,"text":"National Civil Applications Center","active":true,"usgs":true}],"preferred":true,"id":947627,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70258222,"text":"70258222 - 2025 - Clarifying the trophic state concept to advance macroscale freshwater science and management","interactions":[],"lastModifiedDate":"2025-11-26T17:17:38.581342","indexId":"70258222","displayToPublicDate":"2025-09-03T11:10:46","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Clarifying the trophic state concept to advance macroscale freshwater science and management","docAbstract":"<p><span>For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non-algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re-evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.70392","usgsCitation":"Meyer, M.F., Kraemer, B.M., Barbosa, C.C., Cuhna, D.G., Dodds, W., Hampton, S.E., Ordóñez, C., Pilla, R.M., Pollard, A., Culpepper, J.A., Fremier, A.K., King, T.V., Ladwig, R., Leech, D.M., Matsuzaki, S.S., Oleksy, I., Topp, S.N., Woolway, R., Brighenti, L.S., Fickas, K.C., Lanouette, B.P., Ren, J., Werther, M., and Yang, X., 2025, Clarifying the trophic state concept to advance macroscale freshwater science and management: Ecosphere, v. 16, no. 9, e70392, 20 p., https://doi.org/10.1002/ecs2.70392.","productDescription":"e70392, 20 p.","ipdsId":"IP-154125","costCenters":[{"id":518,"text":"Oregon Water Science 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0000-0003-1876-3623","orcid":"https://orcid.org/0000-0003-1876-3623","contributorId":344024,"corporation":false,"usgs":false,"family":"Cuhna","given":"Davi","middleInitial":"G.F.","affiliations":[{"id":38961,"text":"Universidade de São Paulo","active":true,"usgs":false}],"preferred":false,"id":912628,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dodds, Walter 0000-0002-6666-8930","orcid":"https://orcid.org/0000-0002-6666-8930","contributorId":225164,"corporation":false,"usgs":false,"family":"Dodds","given":"Walter","email":"","affiliations":[{"id":41060,"text":"Division of Biology, Kansas State University, Manhattan, KS 66502","active":true,"usgs":false}],"preferred":false,"id":912629,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hampton, Stephanie 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,{"id":70273270,"text":"70273270 - 2025 - Variation in gene expression across infection status and elevation in a Hawaiian honeycreeper","interactions":[],"lastModifiedDate":"2025-12-29T16:09:57.481763","indexId":"70273270","displayToPublicDate":"2025-09-03T10:05:48","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Variation in gene expression across infection status and elevation in a Hawaiian honeycreeper","docAbstract":"<p><span>Introduced pathogens exert novel selection on hosts, and although many host species have experienced drastic population declines in the absence of adaptation, some hosts have adapted to highly virulent pathogens. For instance, mosquitoes and&nbsp;</span><i>Plasmodium relictum</i><span>&nbsp;introduced to the Hawaiian Islands have resulted in extinctions and catastrophic population declines due to avian malaria, particularly in the diverse clade of Hawaiian honeycreepers. However, some species, such as the Hawai'i 'amakihi (</span><i>Chlorodrepanis virens</i><span>), can survive infection. Immunity exists in low-elevation populations where mosquitoes are abundant, whereas high-elevation, unexposed populations of 'amakihi display greatly reduced immunity. To explore the basis of adaptation to&nbsp;</span><i>P. relictum</i><span>&nbsp;in low-elevation 'amakihi, we sequenced transcriptomes from 24 low-elevation and 15 high-elevation 'amakihi. We tested for differential gene expression between (i) infected and uninfected birds and (ii) low- and high-elevation birds. Infected birds showed significant differences in expression across many transcripts with diverse cellular functions involved in different pathways of immune response; eight of the top 13 transcripts blasted to genes previously implicated in immunity to malaria in 'amakihi, and 11 have been identified in other infectious disease systems. Thirteen transcripts showed a trend of higher expression in high-elevation birds. These transcripts blasted to genes involved in metabolism, blood coagulation, and immune response. Our results provide increasing support for a subset of genes involved in immunity to malaria in 'amakihi and hint at possible antagonistic interactions between response to pathogens and environmental characteristics associated with elevation. Further work clarifying the nature of these interactions could benefit conservation efforts of Hawaiian honeycreepers in upper elevation refugia that are increasingly subject to malaria exposure.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/ece3.72078","usgsCitation":"Cassin-Sackett, L., McClure, K.M., Callicrate, T., Paxton, E.H., and Fleischer, R., 2025, Variation in gene expression across infection status and elevation in a Hawaiian honeycreeper: Ecology and Evolution, v. 15, no. 9, e72078, 20 p., https://doi.org/10.1002/ece3.72078.","productDescription":"e72078, 20 p.","ipdsId":"IP-176601","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":498273,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.72078","text":"Publisher Index Page"},{"id":498147,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Hawaii","otherGeospatial":"Island of Hawaii","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -155.43131657241724,\n              19.902375791429492\n            ],\n            [\n              -155.43131657241724,\n              19.300971730675755\n            ],\n            [\n              -154.7972264794636,\n              19.300971730675755\n            ],\n            [\n              -154.7972264794636,\n              19.902375791429492\n            ],\n            [\n              -155.43131657241724,\n              19.902375791429492\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"15","issue":"9","noUsgsAuthors":false,"publicationDate":"2025-09-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Cassin-Sackett, Loren","contributorId":364635,"corporation":false,"usgs":false,"family":"Cassin-Sackett","given":"Loren","affiliations":[{"id":63963,"text":"University of Louisiana","active":true,"usgs":false}],"preferred":false,"id":952973,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McClure, Katherine Maria 0000-0001-8595-7677","orcid":"https://orcid.org/0000-0001-8595-7677","contributorId":332279,"corporation":false,"usgs":true,"family":"McClure","given":"Katherine","email":"","middleInitial":"Maria","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"preferred":true,"id":952974,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Callicrate, Taylor","contributorId":364636,"corporation":false,"usgs":false,"family":"Callicrate","given":"Taylor","affiliations":[{"id":37784,"text":"Smithsonian Conservation Biology Institute","active":true,"usgs":false}],"preferred":false,"id":952975,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Paxton, Eben H. 0000-0001-5578-7689","orcid":"https://orcid.org/0000-0001-5578-7689","contributorId":19640,"corporation":false,"usgs":true,"family":"Paxton","given":"Eben","email":"","middleInitial":"H.","affiliations":[{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":true,"id":952976,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Fleischer, Robert C.","contributorId":258062,"corporation":false,"usgs":false,"family":"Fleischer","given":"Robert C.","affiliations":[{"id":52221,"text":"Center for Conservation Genomics, Smithsonian Conservation Biology Institute","active":true,"usgs":false}],"preferred":false,"id":952977,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70271988,"text":"70271988 - 2025 - Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25","interactions":[{"subject":{"id":70271988,"text":"70271988 - 2025 - Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25","indexId":"70271988","publicationYear":"2025","noYear":false,"title":"Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25"},"predicate":"SUPERSEDED_BY","object":{"id":70275059,"text":"sir20265011 - 2026 - Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017–25","indexId":"sir20265011","publicationYear":"2026","noYear":false,"title":"Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017–25"},"id":1}],"supersededBy":{"id":70275059,"text":"sir20265011 - 2026 - Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017–25","indexId":"sir20265011","publicationYear":"2026","noYear":false,"title":"Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017–25"},"lastModifiedDate":"2026-04-14T17:23:06.565541","indexId":"70271988","displayToPublicDate":"2025-09-03T09:41:16","publicationYear":"2025","noYear":false,"publicationType":{"id":27,"text":"Preprint"},"publicationSubtype":{"id":32,"text":"Preprint"},"seriesTitle":{"id":18346,"text":"EarthArXiv","active":true,"publicationSubtype":{"id":32}},"title":"Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25","docAbstract":"<p><span>The natural gas pipeline network in the United States is extensive and often intersects streams and other sensitive habitats, yet there are limited case studies utilizing a comparative upstream-downstream approach to evaluate potential short- and long-term effects of pipeline stream crossing construction from pre-construction to post-site restoration. In 2017, the U.S. Geological Survey, in cooperation with the Virginia Department of Environmental Quality (DEQ), deployed real-time continuous stream monitoring stations upstream and downstream of six proposed Mountain Valley Pipeline (MVP) stream crossings in southwestern Virginia. Water temperature and turbidity data collected at the upstream and downstream sites were compared across three periods – before crossing construction, during crossing construction, and after crossing construction – to elucidate potential impacts from the stream crossing construction. Additionally, the monitoring network was utilized to notify regulators of potentially anomalous conditions throughout the entire monitoring period.</span><br><br><span>Results of this study indicate (1) at all six monitored streams, pipeline stream crossing construction did not affect long-term or short-term upstream-to-downstream water temperature conditions; (2) pipeline stream crossing construction did not affect long-term upstream-to-downstream turbidity conditions in all six monitored streams. Some short-term anomalously elevated turbidity conditions were observed and attributable to pipeline stream crossing construction; however, the duration and magnitude were not sufficient to alter the long-term turbidity regime of the streams in which they were observed; and (3) the application of the monitoring network as a real-time alert system successfully alerted regulators to potentially anomalous conditions.</span></p>","language":"English","publisher":"EarthArXiv","doi":"10.31223/X5XT9G","usgsCitation":"Foster, B.M., Maas, C.M., and Flota, A.L., 2025, Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25: EarthArXiv, https://doi.org/10.31223/X5XT9G.","productDescription":"77 p.","ipdsId":"IP-182025","costCenters":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true}],"links":[{"id":496259,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Foster, Brendan M. 0000-0003-3029-9923","orcid":"https://orcid.org/0000-0003-3029-9923","contributorId":293624,"corporation":false,"usgs":true,"family":"Foster","given":"Brendan","email":"","middleInitial":"M.","affiliations":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true}],"preferred":true,"id":949612,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Maas, Carly Marcella 0000-0001-8050-4070","orcid":"https://orcid.org/0000-0001-8050-4070","contributorId":361897,"corporation":false,"usgs":true,"family":"Maas","given":"Carly","middleInitial":"Marcella","affiliations":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true}],"preferred":true,"id":949613,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Flota, Alejandra Logan 0009-0005-3829-6358","orcid":"https://orcid.org/0009-0005-3829-6358","contributorId":361898,"corporation":false,"usgs":true,"family":"Flota","given":"Alejandra","middleInitial":"Logan","affiliations":[{"id":37759,"text":"VA/WV Water Science Center","active":true,"usgs":true}],"preferred":true,"id":949614,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70271347,"text":"70271347 - 2025 - An integrated sensor network and data driven approach to satellite remote sensing of dissolved organic matter","interactions":[],"lastModifiedDate":"2025-09-09T13:55:03.276031","indexId":"70271347","displayToPublicDate":"2025-09-03T08:50:39","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5026,"text":"Earth and Space Science","active":true,"publicationSubtype":{"id":10}},"title":"An integrated sensor network and data driven approach to satellite remote sensing of dissolved organic matter","docAbstract":"<p><span>Traditional remote sensing retrieval models for water quality have historically relied on limited, localized data sets due to the prohibitive costs of extensive field campaigns and logistical challenges of collecting match-up data with satellite overpasses. As a result, these models often lack generalizability across seasons, tides, and sites. Furthermore, small field data sets limit the utility of modern machine learning techniques to advance remote sensing retrieval models. In situ optical sensors deployed in a sensor network to continuously monitor larger water bodies can drastically increase the number of measurements, providing the opportunity to develop new approaches for building robust remote sensing retrieval models by leveraging both remote sensing data and in situ networks as an integrated monitoring system. This study leverages a large “ground-to-space” sensor network that combines an in situ optical sensor network with satellite-based remote sensing to overcome these limitations. Utilizing a large-scale data set from the U.S. Geological Survey's Sacramento—San Joaquin River Delta monitoring network, of dissolved organic matter fluorescence measurements, and remote sensing data from the European Space Agency's Sentinel-2A and -2B satellites, this study implemented a data driven approach for dissolved organic matter models. The data set, consisting of 982 samples collected between 2018 and 2021 was used to train and validate a random forest model (</span><i>R</i><sup>2</sup><span>&nbsp;=&nbsp;0.76, RMSE&nbsp;=&nbsp;6.1 Quinine Sulfate Equivalents), with demonstrated applicability across diverse site conditions, tidal stages, and seasons. This work provides a scalable solution to address critical challenges in water quality monitoring and offers a replicable framework for global water quality management.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2024EA004048","usgsCitation":"Avouris, D., Hestir, E.L., Fleck, J., Hansen, J.A., and Bergamaschi, B.A., 2025, An integrated sensor network and data driven approach to satellite remote sensing of dissolved organic matter: Earth and Space Science, v. 12, no. 12, e2024EA004048, 19 p., https://doi.org/10.1029/2024EA004048.","productDescription":"e2024EA004048, 19 p.","ipdsId":"IP-172592","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":495389,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2024ea004048","text":"Publisher Index Page"},{"id":495247,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Calfornia","otherGeospatial":"Sacramento-San Joaquin River Delta","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -121.34190472520478,\n              37.92367880802452\n            ],\n            [\n              -121.34190472520478,\n              38.5486708617789\n            ],\n            [\n              -121.98676504474714,\n              38.5486708617789\n            ],\n            [\n              -121.98676504474714,\n              37.92367880802452\n            ],\n            [\n              -121.34190472520478,\n              37.92367880802452\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"12","issue":"12","noUsgsAuthors":false,"publicationDate":"2025-09-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Avouris, Dulcinea Marie 0000-0001-5797-3960","orcid":"https://orcid.org/0000-0001-5797-3960","contributorId":335170,"corporation":false,"usgs":true,"family":"Avouris","given":"Dulcinea Marie","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948141,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hestir, Erin L","contributorId":361027,"corporation":false,"usgs":false,"family":"Hestir","given":"Erin","middleInitial":"L","affiliations":[{"id":38695,"text":"University of California Merced","active":true,"usgs":false}],"preferred":false,"id":948142,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fleck, Jacob 0000-0002-3217-3972 jafleck@usgs.gov","orcid":"https://orcid.org/0000-0002-3217-3972","contributorId":168694,"corporation":false,"usgs":true,"family":"Fleck","given":"Jacob","email":"jafleck@usgs.gov","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948143,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hansen, Jeffrey A. 0000-0002-2185-1686","orcid":"https://orcid.org/0000-0002-2185-1686","contributorId":205441,"corporation":false,"usgs":true,"family":"Hansen","given":"Jeffrey","email":"","middleInitial":"A.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948144,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bergamaschi, Brian A. 0000-0002-9610-5581 bbergama@usgs.gov","orcid":"https://orcid.org/0000-0002-9610-5581","contributorId":140776,"corporation":false,"usgs":true,"family":"Bergamaschi","given":"Brian","email":"bbergama@usgs.gov","middleInitial":"A.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948145,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70271333,"text":"70271333 - 2025 - Impacts of lake elevation decline on spawning habitat of a critical, native forage species","interactions":[],"lastModifiedDate":"2025-12-01T16:30:30.860959","indexId":"70271333","displayToPublicDate":"2025-09-03T08:18:53","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3624,"text":"Transactions of the American Fisheries Society","active":true,"publicationSubtype":{"id":10}},"title":"Impacts of lake elevation decline on spawning habitat of a critical, native forage species","docAbstract":"<p>Objective</p><p><span>Lake elevation decline is a global phenomenon with pronounced effects in arid regions that changes the characteristics of nearshore habitat area available to lacustrine spawners, potentially impacting recruitment and whole-lake food web dynamics. Our objective was to understand the potential effects of lake elevation decline on spawning habitat for the Tui Chub&nbsp;</span><i>Siphateles bicolor</i><span>, a lacustrine spawner and critical component of the native food web in Pyramid Lake, Nevada.</span></p><p><span>Methods&nbsp;</span></p><p><span>We explored the distribution of ripe Tui Chub in nearshore habitat by associating habitat characteristics to ripe Tui Chub CPUE from a custom gill-net configuration, with data analyzed using generalized linear mixed-effects models. We then explored potential spawning habitat availability at all potential lake elevations using an elevation-explicit model of the basin that we developed based on several bathymetric and geospatial data sets and the knowledge of spawner distribution gained in the first component of the study.</span></p><p><span>Results</span></p><p><span>Ripe Tui Chub catch was primarily predicted by temperature, reaching a maximum between 14.2°C and 24.8°C found at less than 15 m of depth in Pyramid Lake throughout the summer spawning period. We estimated that with a contemporary decline in lake elevation of 8 m, Pyramid Lake will host the minimum area of spawning habitat based on morphometry alone at a 40% decrease from a theoretical maximum.</span></p><p><span>Conclusions</span></p><p><span>A decrease in lake elevation or an increase in lake temperatures—both of which are probable events based on future climate scenarios and estimates of water extraction upstream of Pyramid Lake—is likely to further restrict Tui Chub spawning habitat area. Our results have important implications for ecological water demand in Pyramid Lake and provide managers with information facilitating a science-based approach to managing the fish community.</span></p>","language":"English","publisher":"American Fisheries Society","doi":"10.1093/tafafs/vnaf034","usgsCitation":"Barnes, S., Al-Chokhachy, R., and Budy, P., 2025, Impacts of lake elevation decline on spawning habitat of a critical, native forage species: Transactions of the American Fisheries Society, v. 154, no. 6, p. 640-656, https://doi.org/10.1093/tafafs/vnaf034.","productDescription":"17 p.","startPage":"640","endPage":"656","ipdsId":"IP-161347","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":495220,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Nevada","otherGeospatial":"Pyramid Lake","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -119.72328588180102,\n              40.234157713420586\n            ],\n            [\n              -119.72328588180102,\n              39.842701658708876\n            ],\n            [\n              -119.32079294757592,\n              39.842701658708876\n            ],\n            [\n              -119.32079294757592,\n              40.234157713420586\n            ],\n            [\n              -119.72328588180102,\n              40.234157713420586\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"154","issue":"6","noUsgsAuthors":false,"publicationDate":"2025-09-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Barnes, Sarah","contributorId":360982,"corporation":false,"usgs":false,"family":"Barnes","given":"Sarah","affiliations":[{"id":6682,"text":"Utah State University","active":true,"usgs":false}],"preferred":false,"id":948072,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Al-Chokhachy, Robert 0000-0002-2136-5098","orcid":"https://orcid.org/0000-0002-2136-5098","contributorId":216140,"corporation":false,"usgs":true,"family":"Al-Chokhachy","given":"Robert","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":948073,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Budy, Phaedra E. 0000-0002-9918-1678 pbudy@usgs.gov","orcid":"https://orcid.org/0000-0002-9918-1678","contributorId":140028,"corporation":false,"usgs":true,"family":"Budy","given":"Phaedra","email":"pbudy@usgs.gov","middleInitial":"E.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":948074,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70271319,"text":"70271319 - 2025 - Clarifying the trophic state concept to advance macroscale freshwater science and management","interactions":[],"lastModifiedDate":"2025-09-05T14:59:00.832743","indexId":"70271319","displayToPublicDate":"2025-09-03T07:49:56","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Clarifying the trophic state concept to advance macroscale freshwater science and management","docAbstract":"<p><span>For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non-algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re-evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.70392","usgsCitation":"Meyer, M.F., Kraemer, B.M., Barbosa, C.C., Cuhna, D.G., Dodds, W., Hampton, S.E., Ordóñez, C., Pilla, R.M., Pollard, A., Culpepper, J.A., Fremier, A.K., King, T.V., Ladwig, R., Leech, D.M., Matsuzaki, S.S., Oleksy, I., Topp, S.N., Woolway, R.I., Brighenti, L.S., Fickas, K., Lanouette, B.P., Ren, J., Werther, M., and Yang, X., 2025, Clarifying the trophic state concept to advance macroscale freshwater science and management: Ecosphere, v. 16, no. 9, e70392, 20 p., https://doi.org/10.1002/ecs2.70392.","productDescription":"e70392, 20 p.","ipdsId":"IP-179274","costCenters":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"links":[{"id":495377,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecs2.70392","text":"Publisher Index Page"},{"id":495285,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P14KNKHD","text":"USGS data release","linkHelpText":"Clarifying the trophic state concept to advance macroscale freshwater science and management"},{"id":495197,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"16","issue":"9","noUsgsAuthors":false,"publicationDate":"2025-09-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Meyer, Michael Frederick 0000-0002-8034-9434 mmeyer@usgs.gov","orcid":"https://orcid.org/0000-0002-8034-9434","contributorId":304191,"corporation":false,"usgs":true,"family":"Meyer","given":"Michael","email":"mmeyer@usgs.gov","middleInitial":"Frederick","affiliations":[{"id":37786,"text":"WMA - Observing Systems Division","active":true,"usgs":true}],"preferred":true,"id":948007,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kraemer, Benjamin M. 0000-0002-3390-9005","orcid":"https://orcid.org/0000-0002-3390-9005","contributorId":360959,"corporation":false,"usgs":false,"family":"Kraemer","given":"Benjamin","middleInitial":"M.","affiliations":[{"id":33350,"text":"University of Freiburg","active":true,"usgs":false}],"preferred":false,"id":948008,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Barbosa, Carolina C. 0000-0002-6393-5730","orcid":"https://orcid.org/0000-0002-6393-5730","contributorId":268214,"corporation":false,"usgs":false,"family":"Barbosa","given":"Carolina","email":"","middleInitial":"C.","affiliations":[{"id":55596,"text":"São Carlos School of Engineering, Hydraulics and Sanitation Department","active":true,"usgs":false}],"preferred":false,"id":948009,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Cuhna, Davi G.F. 0000-0003-1876-3623","orcid":"https://orcid.org/0000-0003-1876-3623","contributorId":344024,"corporation":false,"usgs":false,"family":"Cuhna","given":"Davi","middleInitial":"G.F.","affiliations":[{"id":38961,"text":"Universidade de São Paulo","active":true,"usgs":false}],"preferred":false,"id":948010,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dodds, Walter 0000-0002-6666-8930","orcid":"https://orcid.org/0000-0002-6666-8930","contributorId":225164,"corporation":false,"usgs":false,"family":"Dodds","given":"Walter","email":"","affiliations":[{"id":41060,"text":"Division of Biology, Kansas State University, Manhattan, KS 66502","active":true,"usgs":false}],"preferred":false,"id":948011,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hampton, Stephanie E. 0000-0003-2389-4249","orcid":"https://orcid.org/0000-0003-2389-4249","contributorId":360962,"corporation":false,"usgs":false,"family":"Hampton","given":"Stephanie","middleInitial":"E.","affiliations":[{"id":7082,"text":"University of California - Davis","active":true,"usgs":false}],"preferred":false,"id":948012,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Ordóñez, César 0000-0001-6295-7690","orcid":"https://orcid.org/0000-0001-6295-7690","contributorId":344025,"corporation":false,"usgs":false,"family":"Ordóñez","given":"César","affiliations":[{"id":25472,"text":"University of Geneva","active":true,"usgs":false}],"preferred":false,"id":948013,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Pilla, Rachel M. 0000-0001-9156-9486","orcid":"https://orcid.org/0000-0001-9156-9486","contributorId":261758,"corporation":false,"usgs":false,"family":"Pilla","given":"Rachel","email":"","middleInitial":"M.","affiliations":[{"id":16608,"text":"Miami University","active":true,"usgs":false}],"preferred":false,"id":948014,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Pollard, Amina 0000-0002-5010-0961","orcid":"https://orcid.org/0000-0002-5010-0961","contributorId":245604,"corporation":false,"usgs":false,"family":"Pollard","given":"Amina","email":"","affiliations":[{"id":37230,"text":"EPA","active":true,"usgs":false}],"preferred":false,"id":948015,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Culpepper, Joshua A. 0000-0002-0468-0539","orcid":"https://orcid.org/0000-0002-0468-0539","contributorId":344026,"corporation":false,"usgs":false,"family":"Culpepper","given":"Joshua","middleInitial":"A.","affiliations":[{"id":16184,"text":"York University","active":true,"usgs":false}],"preferred":false,"id":948016,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Fremier, Alexander K. 0000-0002-4104-6633","orcid":"https://orcid.org/0000-0002-4104-6633","contributorId":360964,"corporation":false,"usgs":false,"family":"Fremier","given":"Alexander","middleInitial":"K.","affiliations":[{"id":37380,"text":"Washington State University","active":true,"usgs":false}],"preferred":false,"id":948017,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"King, Tyler V. 0000-0002-5785-3077","orcid":"https://orcid.org/0000-0002-5785-3077","contributorId":292424,"corporation":false,"usgs":true,"family":"King","given":"Tyler","middleInitial":"V.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":true,"id":948018,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Ladwig, Robert 0000-0001-8443-1999","orcid":"https://orcid.org/0000-0001-8443-1999","contributorId":268211,"corporation":false,"usgs":false,"family":"Ladwig","given":"Robert","email":"","affiliations":[],"preferred":false,"id":948019,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Leech, Dina M. 0000-0002-0674-3433","orcid":"https://orcid.org/0000-0002-0674-3433","contributorId":304192,"corporation":false,"usgs":false,"family":"Leech","given":"Dina","middleInitial":"M.","affiliations":[{"id":65997,"text":"Longwood University","active":true,"usgs":false}],"preferred":false,"id":948020,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Matsuzaki, Shin-Ichiro S 0000-0003-2744-1343","orcid":"https://orcid.org/0000-0003-2744-1343","contributorId":360966,"corporation":false,"usgs":false,"family":"Matsuzaki","given":"Shin-Ichiro","middleInitial":"S","affiliations":[{"id":84656,"text":"National Institute for Environmental Studies","active":true,"usgs":false}],"preferred":false,"id":948021,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Oleksy, Isabella 0000-0003-2572-5457","orcid":"https://orcid.org/0000-0003-2572-5457","contributorId":268213,"corporation":false,"usgs":false,"family":"Oleksy","given":"Isabella","email":"","affiliations":[{"id":36628,"text":"University of Wyoming","active":true,"usgs":false}],"preferred":false,"id":948022,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Topp, Simon N. 0000-0001-7741-5982","orcid":"https://orcid.org/0000-0001-7741-5982","contributorId":344031,"corporation":false,"usgs":false,"family":"Topp","given":"Simon","middleInitial":"N.","affiliations":[{"id":82271,"text":"Upsteam Tech","active":true,"usgs":false}],"preferred":false,"id":948023,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Woolway, R. Iestyn 0000-0003-0498-7968","orcid":"https://orcid.org/0000-0003-0498-7968","contributorId":297333,"corporation":false,"usgs":false,"family":"Woolway","given":"R.","email":"","middleInitial":"Iestyn","affiliations":[{"id":64373,"text":"European Space Agency Climate Office","active":true,"usgs":false}],"preferred":false,"id":948024,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Brighenti, Ludmila S. 0000-0003-1305-2689","orcid":"https://orcid.org/0000-0003-1305-2689","contributorId":360968,"corporation":false,"usgs":false,"family":"Brighenti","given":"Ludmila","middleInitial":"S.","affiliations":[{"id":69135,"text":"Universidade do Estado de Minas Gerais","active":true,"usgs":false}],"preferred":false,"id":948025,"contributorType":{"id":1,"text":"Authors"},"rank":19},{"text":"Fickas, Kate 0000-0002-6617-2441","orcid":"https://orcid.org/0000-0002-6617-2441","contributorId":335518,"corporation":false,"usgs":false,"family":"Fickas","given":"Kate","affiliations":[{"id":38832,"text":"Esri","active":true,"usgs":false}],"preferred":false,"id":948026,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Lanouette, Brian P. 0000-0003-2131-8635","orcid":"https://orcid.org/0000-0003-2131-8635","contributorId":344034,"corporation":false,"usgs":false,"family":"Lanouette","given":"Brian","middleInitial":"P.","affiliations":[{"id":82272,"text":"Upper Skagit Indian Tribe","active":true,"usgs":false}],"preferred":false,"id":948027,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Ren, Jianning 0000-0002-5849-2189","orcid":"https://orcid.org/0000-0002-5849-2189","contributorId":304196,"corporation":false,"usgs":false,"family":"Ren","given":"Jianning","email":"","affiliations":[{"id":16704,"text":"University of Nevada - Reno","active":true,"usgs":false}],"preferred":false,"id":948028,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"Werther, Mortimer 0000-0002-0775-9285","orcid":"https://orcid.org/0000-0002-0775-9285","contributorId":344035,"corporation":false,"usgs":false,"family":"Werther","given":"Mortimer","affiliations":[{"id":82274,"text":"Swiss Federal Institute of Aquatic Science and Technology (EAWAG)","active":true,"usgs":false}],"preferred":false,"id":948029,"contributorType":{"id":1,"text":"Authors"},"rank":23},{"text":"Yang, Xiao 0000-0002-0046-832X","orcid":"https://orcid.org/0000-0002-0046-832X","contributorId":268230,"corporation":false,"usgs":false,"family":"Yang","given":"Xiao","email":"","affiliations":[{"id":55603,"text":"University of North Carolina Chapel Hill","active":true,"usgs":false}],"preferred":false,"id":948030,"contributorType":{"id":1,"text":"Authors"},"rank":24}]}}
,{"id":70270764,"text":"sir20255064 - 2025 - Grammar to graph—An approach for semantic transformation of annotations to triples","interactions":[],"lastModifiedDate":"2026-02-03T15:19:08.178992","indexId":"sir20255064","displayToPublicDate":"2025-09-02T11:30:00","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2025-5064","displayTitle":"Grammar to Graph—An Approach for Semantic Transformation of Annotations to Triples","title":"Grammar to graph—An approach for semantic transformation of annotations to triples","docAbstract":"<p>Data annotation is the process of labeling data to show the outcome that a related data model should predict. In this study, annotation data were transformed into semantic graph triples, mainly for use with the Resource Description Framework (RDF), a type of entity-relationship-attribute data model for graph databases. The transformation of annotation data to semantic graph triples provides complex linguistic meaning with data handling advantages such as reduced data storage needs, improved logical specification of relations between objects, and reusable classes and properties that support logic and inference. A grammar-based framework in graph form supports user questions and queries.</p><p>The words defining approximately 334 topographic feature types compiled by the U.S. Geological Survey were tokenized as units of analysis and grouped by part of speech. Their dependency relations were identified for this study using natural language processing libraries. Dependency concepts are used as structured semantic relations among part-of-speech classes. Tokens, units equivalent to words, form instances of classes and were quantified within a tabular output format using PostgreSQL data storage software. Table data were logically aligned as triples following a mapping file and stored with an ontology file using Ontop virtual triplestore software. A grammar ontology schema for the data was synchronized to match queries whose results validated the graph’s structure. The text analysis produced 8 part-of-speech classes of content words for object representations and 4 classes of function words for operational applications. Dependency relations formed 27 ontology properties for topographic subgraph structures. Token occurrences shaped overall ontology salience and formed a lexicon of syntactic terms for subgraph objects and properties. The schema ontology of class and property population shapes formed the lexicon of English terms. SPARQL Protocol and RDF Query Language (SPARQL) was used with the lexicon to conform data to RDF guidelines.</p><p>This study confirms the hypothesis that although linguistic logic varies from description logic, its approximation applies to ontology design. Property and query use case patterns extracted from the analysis support queries concerning complex topographic relations and patterns normally embedded within text definitions. The method used in this study could be applied to text forms in other domains, such as survey notes.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston VA","doi":"10.3133/sir20255064","programNote":"National Geospatial Program","usgsCitation":"Varanka, D.E., and Abbott, E., 2025, Grammar to graph—An approach for semantic transformation of annotations to triples: U.S. Geological Survey Scientific Investigations Report 2025–5064, 20 p., https://doi.org/10.3133/sir20255064.","productDescription":"Report: vi, 20 p.; Data Release","onlineOnly":"Y","ipdsId":"IP-150174","costCenters":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"links":[{"id":494546,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2025/5064/sir20255064.pdf","text":"Report","size":"3.49 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2025-5064"},{"id":494604,"rank":5,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2025/5064/sir20255064.xml"},{"id":494603,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2025/5064/images"},{"id":494547,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P1BDPXKZ","text":"USGS data release","description":"Data release associated with SIR 2025-5064","linkHelpText":"Grammar transformations of topographic feature type annotations of the U.S. to structured graph data"},{"id":494545,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2025/5064/coverthb.jpg","text":"Report"},{"id":495126,"rank":6,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/sir20255064/full","text":"Report","linkFileType":{"id":5,"text":"html"},"description":"SIR 2025-5064"}],"contact":"<p>Director, <a href=\"https://www.usgs.gov/national-geospatial-technical-operations-center\" data-mce-href=\"https://www.usgs.gov/national-geospatial-technical-operations-center\">National Geospatial Technical Operations Center</a><br>U.S. Geological Survey<br>Box 25046, Mail Stop 510<br>Denver, Colorado 80225-0046</p>","tableOfContents":"<ul><li>Abstract</li><li>Introduction</li><li>Background</li><li>Methods</li><li>Results</li><li>Discussion</li><li>Summary</li><li>Acknowledgments</li><li>References Cited</li><li>Glossary</li><li>Appendix 1. Topographic Property Patterns</li></ul>","publishedDate":"2025-09-02","noUsgsAuthors":false,"publicationDate":"2025-09-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Varanka, Dalia E. 0000-0003-2857-9600 dvaranka@usgs.gov","orcid":"https://orcid.org/0000-0003-2857-9600","contributorId":1296,"corporation":false,"usgs":true,"family":"Varanka","given":"Dalia","email":"dvaranka@usgs.gov","middleInitial":"E.","affiliations":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true},{"id":404,"text":"NGTOC Rolla","active":true,"usgs":true}],"preferred":true,"id":947019,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Emily Abbott","contributorId":360408,"corporation":false,"usgs":false,"family":"Emily Abbott","affiliations":[{"id":6606,"text":"Colorado School of Mines","active":true,"usgs":false}],"preferred":false,"id":947020,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70273162,"text":"70273162 - 2025 - Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its Exaiptasia diaphana host","interactions":[],"lastModifiedDate":"2025-12-17T16:06:58.052969","indexId":"70273162","displayToPublicDate":"2025-09-02T10:03:48","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3563,"text":"The ISME Journal","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its <i>Exaiptasia diaphana</i> host","title":"Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its Exaiptasia diaphana host","docAbstract":"<p><span>Symbiodiniaceae-associated microbiota strongly influence cnidarian symbioses. We systematically reduced the bacterial and fungal communities associated with Symbiodiniaceae to study potential effects on the cnidarian holobiont&nbsp;</span><i>Exaiptasia diaphana</i><span>&nbsp;(Aiptasia). Clonal anemones were inoculated with xenic&nbsp;</span><i>Breviolum minutum</i><span>&nbsp;(SSB01) and microbiome-manipulated cultures after antibacterial or antifungal treatment. The asexual reproduction of pedal laceration allowed for three generations of clonal aposymbiotic Aiptasia to be utilised in this study, from the initial adult generation (G0), to the first (G1), and second (G2) generation. We inoculated small and large G1 Aiptasia with SSB01 algae and monitored onset of symbiosis, rate of algal proliferation, and holobiont characteristics. Sequencing the 16S and 18S rRNA gene regions identified significant differences in the bacterial and fungal communities of the G0 and G1 generations, alongside differences between the size classes of small and large G1 anemones. The microbiome of larger G1 individuals was distinct to the smaller G1 anemones, suggesting a microbiome maturation process. Control&nbsp;</span><i>Breviolum minutum</i><span>&nbsp;cultures exhibited a significantly greater proliferation rate in large G1 anemones when compared to antibacterial or antifungal treated cultures, whereas the opposite trend was documented in the small G1 anemones. Although no differences were observed between algal photochemical parameters, or the growth and polyp activity of G1 juveniles, we observed a significant influence in the production of G2 clones between treatments. Overall, we provide strong ecological implications of manipulating Symbiodiniaceae microbiome, not for the algae themselves, but for the maturation of the host Aiptasia, as well as for the cnidarian holobiont over multiple generations.</span></p>","language":"English","publisher":"Oxford Academic","doi":"10.1093/ismejo/wraf189","usgsCitation":"Mccauley, M., Montesanto, F., Bedgood, S.A., Miner, C., Plichon, K., Weis, V.M., and Loesgen, S., 2025, Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its Exaiptasia diaphana host: The ISME Journal, v. 19, no. 1, wraf189, 14 p., https://doi.org/10.1093/ismejo/wraf189.","productDescription":"wraf189, 14 p.","ipdsId":"IP-180949","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":497741,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/ismejo/wraf189","text":"Publisher Index Page"},{"id":497644,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"19","issue":"1","noUsgsAuthors":false,"publicationDate":"2025-09-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Mccauley, Mark 0000-0001-5347-6860","orcid":"https://orcid.org/0000-0001-5347-6860","contributorId":357083,"corporation":false,"usgs":true,"family":"Mccauley","given":"Mark","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":952549,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Montesanto, Federica","contributorId":364337,"corporation":false,"usgs":false,"family":"Montesanto","given":"Federica","affiliations":[{"id":86810,"text":"Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, Florida, USA","active":true,"usgs":false}],"preferred":false,"id":952550,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bedgood, Samuel A.","contributorId":364338,"corporation":false,"usgs":false,"family":"Bedgood","given":"Samuel","middleInitial":"A.","affiliations":[{"id":86811,"text":"Department of Integrative Biology, Oregon State University, Corvallis, Oregon, USA","active":true,"usgs":false}],"preferred":false,"id":952551,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Miner, Cody","contributorId":364339,"corporation":false,"usgs":false,"family":"Miner","given":"Cody","affiliations":[{"id":86810,"text":"Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, Florida, USA","active":true,"usgs":false}],"preferred":false,"id":952552,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Plichon, Keyla","contributorId":364340,"corporation":false,"usgs":false,"family":"Plichon","given":"Keyla","affiliations":[{"id":86811,"text":"Department of Integrative Biology, Oregon State University, Corvallis, Oregon, USA","active":true,"usgs":false}],"preferred":false,"id":952553,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Weis, Virginia M.","contributorId":364341,"corporation":false,"usgs":false,"family":"Weis","given":"Virginia","middleInitial":"M.","affiliations":[{"id":86811,"text":"Department of Integrative Biology, Oregon State University, Corvallis, Oregon, USA","active":true,"usgs":false}],"preferred":false,"id":952554,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Loesgen, Sandra","contributorId":364342,"corporation":false,"usgs":false,"family":"Loesgen","given":"Sandra","affiliations":[{"id":86810,"text":"Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, Florida, USA","active":true,"usgs":false}],"preferred":false,"id":952555,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70271701,"text":"70271701 - 2025 - Satellite tracking reveals heavy use of local MPAs by green turtles (Chelonia mydas) nesting in southeast Florida, USA","interactions":[],"lastModifiedDate":"2025-09-19T14:49:14.117443","indexId":"70271701","displayToPublicDate":"2025-09-02T09:44:34","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2660,"text":"Marine Biology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Satellite tracking reveals heavy use of local MPAs by green turtles (<i>Chelonia mydas</i>) nesting in southeast Florida, USA","title":"Satellite tracking reveals heavy use of local MPAs by green turtles (Chelonia mydas) nesting in southeast Florida, USA","docAbstract":"<p><span>Florida hosts a regionally important nesting aggregation of green turtles (</span><i>Chelonia mydas</i><span>) in the North Atlantic, yet internesting and post-nesting movements for this rookery remain poorly understood. Here, we used satellite telemetry to track 23 green turtles nesting on southeast Florida beaches from 2017 to 2021 to investigate their spatial ecology and use of marine protected areas (MPAs) during internesting, migration, and foraging. Marine protected areas are widely used in marine conservation and can be powerful tools for managing species and protecting biodiversity. During internesting, turtles used nearshore, unprotected coastal waters adjacent to the study site. After the nesting season, turtles migrated 24.1 to 203.5&nbsp;km to previously identified foraging grounds, including areas within Biscayne National Park and Florida Keys National Marine Sanctuary, as well as a high-use but unprotected area off Cape Sable, Florida. Throughout the internesting and foraging periods, turtles exhibited little spatial overlap of core-use areas, suggesting limited space-use sharing even in high-density regions. This study provides the first satellite telemetry dataset for green turtles from southeast Florida and reveals their strong reliance on a relatively small MPA network along southwest Florida. Our findings underscore how these MPAs can support conservation efforts for Florida’s overall green turtle nesting population, while further emphasizing the potential benefits of expanded protections in key areas to safeguard regionally important green turtle habitat.</span></p>","language":"English","publisher":"Springer Nature","doi":"10.1007/s00227-025-04694-5","usgsCitation":"Goodwin, G.D., Hart, K., Evans, A.C., and Burkholder, D.A., 2025, Satellite tracking reveals heavy use of local MPAs by green turtles (Chelonia mydas) nesting in southeast Florida, USA: Marine Biology, v. 172, no. 10, 153, 13 p., https://doi.org/10.1007/s00227-025-04694-5.","productDescription":"153, 13 p.","ipdsId":"IP-173964","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":495795,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Florida","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -83,\n              26.5\n            ],\n            [\n              -83,\n              24\n            ],\n            [\n              -80,\n              24\n            ],\n            [\n              -80,\n              26.5\n            ],\n            [\n              -83,\n              26.5\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"172","issue":"10","noUsgsAuthors":false,"publicationDate":"2025-09-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Goodwin, Glenn D.","contributorId":361599,"corporation":false,"usgs":false,"family":"Goodwin","given":"Glenn","middleInitial":"D.","affiliations":[{"id":81512,"text":"Halmos College of Arts and Sciences, Nova Southeastern University","active":true,"usgs":false}],"preferred":false,"id":949064,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hart, Kristen 0000-0002-5257-7974","orcid":"https://orcid.org/0000-0002-5257-7974","contributorId":222407,"corporation":false,"usgs":true,"family":"Hart","given":"Kristen","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":949065,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Evans, Abby C.","contributorId":361600,"corporation":false,"usgs":false,"family":"Evans","given":"Abby","middleInitial":"C.","affiliations":[{"id":81512,"text":"Halmos College of Arts and Sciences, Nova Southeastern University","active":true,"usgs":false}],"preferred":false,"id":949066,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Burkholder, Derek A. 0000-0001-6315-6932","orcid":"https://orcid.org/0000-0001-6315-6932","contributorId":289783,"corporation":false,"usgs":false,"family":"Burkholder","given":"Derek","email":"","middleInitial":"A.","affiliations":[{"id":62249,"text":"Halmos College of Natural Sciences and Oceanography, Department of Marine and Environmental Science, Nova Southeastern University","active":true,"usgs":false}],"preferred":false,"id":949067,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70273218,"text":"70273218 - 2025 - A scientific vision and roadmap for earthquake rupture forecast developments, a USGS perspective","interactions":[],"lastModifiedDate":"2025-12-22T15:16:05.64178","indexId":"70273218","displayToPublicDate":"2025-09-02T08:07:40","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1135,"text":"Bulletin of the Seismological Society of America","onlineIssn":"1943-3573","printIssn":"0037-1106","active":true,"publicationSubtype":{"id":10}},"title":"A scientific vision and roadmap for earthquake rupture forecast developments, a USGS perspective","docAbstract":"We articulate a scientific vision and roadmap for the development of improved Earthquake Rupture Forecast models, which are one of the two main modeling components used in modern seismic hazard and risk analysis.  One primary future objective is to provide fully time-dependent models that include both elastic rebound and spatiotemporal clustering nationwide, which is particularly important for shorter-term hazard and risk considerations (e.g., earthquake insurance products). We also discuss the importance and perennial challenges associated with quantifying epistemic uncertainties, including those associated with deformation-model slip rates, un-quantified sampling errors with respect to off-fault seismicity, and any spatial covariances. The need for more physics-based approaches is also emphasized, as is the benefit of adding model valuation (quantifying usefulness) to our verification and validation protocols.  Given the multidisciplinary and system-level nature of this activity, modular design is critical.  Future updates will also draw from best-available science by both the United States Geological Survey and the external community. The primary goal of this paper is to highlight plans that guide research and facilitate community engagement with model development, especially with respect to lowering the entry barrier for early career scientists and engineers.  The paper is written so readers can focus on the sections that interest them most (see table of contents), with the Introduction and Discussion providing a stand-alone overview and summary.","language":"English","publisher":"Seismological Society of America","doi":"10.1785/0120240217","usgsCitation":"Field, E.H., Hatem, A.E., Shaw, B.E., Page, M.T., Mai, P.M., Milner, K., Llenos, A.L., Michael, A.J., Pollitz, F., Jobe, J.A., Parsons, T.E., Zielke, O., Shelly, D.R., Gabriel, A., McPhillips, D., Briggs, R.W., Cochran, E.S., Luco, N., Petersen, M.D., Powers, P.M., Rubinstein, J., Shumway, A., van der Elst, N., Zeng, Y., DuRoss, C., and Altekruse, J.M., 2025, A scientific vision and roadmap for earthquake rupture forecast developments, a USGS perspective: Bulletin of the Seismological Society of America, v. 115, no. 6, p. 2523-2552, https://doi.org/10.1785/0120240217.","productDescription":"30 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pmpowers@usgs.gov","orcid":"https://orcid.org/0000-0003-2124-6184","contributorId":176814,"corporation":false,"usgs":true,"family":"Powers","given":"Peter","email":"pmpowers@usgs.gov","middleInitial":"M.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":952760,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Rubinstein, Justin 0000-0003-1274-6785","orcid":"https://orcid.org/0000-0003-1274-6785","contributorId":215341,"corporation":false,"usgs":true,"family":"Rubinstein","given":"Justin","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":952761,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Shumway, Allison 0000-0003-1142-7141 ashumway@usgs.gov","orcid":"https://orcid.org/0000-0003-1142-7141","contributorId":147862,"corporation":false,"usgs":true,"family":"Shumway","given":"Allison","email":"ashumway@usgs.gov","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":952762,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"van der Elst, Nicholas 0000-0002-3812-1153 nvanderelst@usgs.gov","orcid":"https://orcid.org/0000-0002-3812-1153","contributorId":147858,"corporation":false,"usgs":true,"family":"van der Elst","given":"Nicholas","email":"nvanderelst@usgs.gov","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true},{"id":234,"text":"Earthquake Hazards Program","active":true,"usgs":true}],"preferred":true,"id":952763,"contributorType":{"id":1,"text":"Authors"},"rank":23},{"text":"Zeng, Yuehua 0000-0003-1161-1264 zeng@usgs.gov","orcid":"https://orcid.org/0000-0003-1161-1264","contributorId":145693,"corporation":false,"usgs":true,"family":"Zeng","given":"Yuehua","email":"zeng@usgs.gov","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":952764,"contributorType":{"id":1,"text":"Authors"},"rank":24},{"text":"DuRoss, Christopher 0000-0002-6963-7451 cduross@usgs.gov","orcid":"https://orcid.org/0000-0002-6963-7451","contributorId":152321,"corporation":false,"usgs":true,"family":"DuRoss","given":"Christopher","email":"cduross@usgs.gov","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":952765,"contributorType":{"id":1,"text":"Authors"},"rank":25},{"text":"Altekruse, Jason M. 0000-0002-8798-9514","orcid":"https://orcid.org/0000-0002-8798-9514","contributorId":291308,"corporation":false,"usgs":true,"family":"Altekruse","given":"Jason","email":"","middleInitial":"M.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":true,"id":952766,"contributorType":{"id":1,"text":"Authors"},"rank":26}]}}
,{"id":70271160,"text":"ofr20251048 - 2025 - ECCOE Landsat quarterly calibration and validation report—Quarter 1, 2025","interactions":[],"lastModifiedDate":"2026-02-03T15:18:16.668024","indexId":"ofr20251048","displayToPublicDate":"2025-09-02T08:01:24","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2025-1048","displayTitle":"ECCOE Landsat Quarterly Calibration and Validation Report—Quarter 1, 2025","title":"ECCOE Landsat quarterly calibration and validation report—Quarter 1, 2025","docAbstract":"<h1>Executive Summary&nbsp;</h1><p>The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence (ECCOE) focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The ECCOE Landsat Cal/Val Team continually monitors the geometric and radiometric performance of active Landsat missions and makes calibration adjustments, as needed, to maintain data quality at the highest level.</p><p>This report provides observed geometric and radiometric analysis results for Landsats 8 and 9 for quarter 1 (January–March) of 2025. All data used to compile the Cal/Val analysis results presented in this report are freely available from the U.S. Geological Survey EarthExplorer website: <a href=\"https://earthexplorer.usgs.gov\" data-mce-href=\"https://earthexplorer.usgs.gov\">https://earthexplorer.usgs.gov</a>.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20251048","usgsCitation":"Haque, M.O., Hasan, M.N., Shrestha, A., Rengarajan, R., Lubke, M., Steinwand, D., Bresnahan, P., Shaw, J.L., Ruslander, K., Micijevic, E., Choate, M.J., Anderson, C., Clauson, J., Thome, K., Kaita, E., Angal, A., Levy, R., Miller, J.,\nDing, L., and Teixeira Pinto, C., 2025, ECCOE Landsat quarterly calibration and validation report—Quarter 1, 2025: U.S. Geological Survey Open-File Report 2025–1048, 56 p., https://doi.org/10.3133/ofr20251048.","productDescription":"Report: viii, 56 p.; Dataset","numberOfPages":"68","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-178690","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":495088,"rank":5,"type":{"id":28,"text":"Dataset"},"url":"https://earthexplorer.usgs.gov/","text":"USGS database","linkHelpText":"- EarthExplorer"},{"id":495089,"rank":6,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/ofr20251048/full"},{"id":495087,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/of/2025/1048/images/"},{"id":495084,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2025/1048/coverthb.jpg"},{"id":495086,"rank":3,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/of/2025/1048/ofr20251048.XML"},{"id":495085,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2025/1048/ofr20251048.pdf","text":"Report","size":"5.3 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2025-1048"}],"contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/eros\" data-mce-href=\"https://www.usgs.gov/centers/eros\">Earth Resources Observation and Science Center</a><br>U.S. Geological Survey<br>47914 252nd Street<br>Sioux Falls, SD 57198</p><p><a href=\"https://pubs.usgs.gov/contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Executive Summary</li><li>Plain Language Summary</li><li>Introduction</li><li>Landsat 9 Radiometric Performance Summary</li><li>Landsat 9 Geometric Performance Summary</li><li>Landsat 8 Radiometric Performance Summary</li><li>Landsat 8 Geometric Performance Summary</li><li>Quarterly Level 2 Validation Results</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2025-09-02","noUsgsAuthors":false,"plainLanguageSummary":"<p>The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation Center of Excellence Team assesses and calibrates Landsat remote-sensing data to ensure high-quality data products are publicly available. These data products are used to make informed decisions about natural resources and the environment. This report is part of a series of quarterly reports intended to provide updated observed geometric and radiometric analysis results for Landsats 8 and 9.</p>","publicationDate":"2025-09-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Haque, Md Obaidul 0000-0002-0914-1446","orcid":"https://orcid.org/0000-0002-0914-1446","contributorId":290335,"corporation":false,"usgs":false,"family":"Haque","given":"Md Obaidul","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":false,"id":947607,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hasan, Nahid 0000-0002-0463-601X","orcid":"https://orcid.org/0000-0002-0463-601X","contributorId":292342,"corporation":false,"usgs":false,"family":"Hasan","given":"Nahid","email":"","affiliations":[{"id":40546,"text":"KBR, Contractor to the USGS Earth Resources Observation and Science (EROS) Center","active":true,"usgs":false}],"preferred":false,"id":947608,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Shrestha, Ashish 0000-0002-9407-5462","orcid":"https://orcid.org/0000-0002-9407-5462","contributorId":298063,"corporation":false,"usgs":false,"family":"Shrestha","given":"Ashish","email":"","affiliations":[{"id":40546,"text":"KBR, Contractor to the USGS Earth Resources Observation and Science (EROS) Center","active":true,"usgs":false}],"preferred":false,"id":947609,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Rengarajan, Rajagopalan 0000-0003-1860-7110","orcid":"https://orcid.org/0000-0003-1860-7110","contributorId":242014,"corporation":false,"usgs":false,"family":"Rengarajan","given":"Rajagopalan","affiliations":[{"id":48475,"text":"KBR, Contractor to USGS EROS","active":true,"usgs":false}],"preferred":false,"id":947610,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lubke, Mark 0000-0002-7257-2337","orcid":"https://orcid.org/0000-0002-7257-2337","contributorId":261911,"corporation":false,"usgs":false,"family":"Lubke","given":"Mark","email":"","affiliations":[{"id":53079,"text":"KBR, contractor to U.S. Geological Survey","active":true,"usgs":false}],"preferred":false,"id":947611,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Steinwand, Daniel 0009-0008-6588-9775","orcid":"https://orcid.org/0009-0008-6588-9775","contributorId":357557,"corporation":false,"usgs":false,"family":"Steinwand","given":"Daniel","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":false,"id":947612,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Bresnahan, Paul 0000-0002-3491-0956","orcid":"https://orcid.org/0000-0002-3491-0956","contributorId":306120,"corporation":false,"usgs":false,"family":"Bresnahan","given":"Paul","affiliations":[{"id":27608,"text":"Contractor to the USGS","active":true,"usgs":false}],"preferred":false,"id":947613,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Shaw, Jerad L. 0000-0002-8319-2778","orcid":"https://orcid.org/0000-0002-8319-2778","contributorId":270396,"corporation":false,"usgs":false,"family":"Shaw","given":"Jerad L.","affiliations":[{"id":40546,"text":"KBR, Contractor to the USGS Earth Resources Observation and Science (EROS) Center","active":true,"usgs":false}],"preferred":false,"id":947614,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Ruslander, Kathryn 0000-0003-3036-1731","orcid":"https://orcid.org/0000-0003-3036-1731","contributorId":330181,"corporation":false,"usgs":false,"family":"Ruslander","given":"Kathryn","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":false,"id":947615,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Micijevic, Esad 0000-0002-3828-9239 emicijevic@usgs.gov","orcid":"https://orcid.org/0000-0002-3828-9239","contributorId":3075,"corporation":false,"usgs":true,"family":"Micijevic","given":"Esad","email":"emicijevic@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":947616,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Choate, Michael J. 0000-0002-8101-4994","orcid":"https://orcid.org/0000-0002-8101-4994","contributorId":268248,"corporation":false,"usgs":true,"family":"Choate","given":"Michael J.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":947617,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Anderson, Cody 0000-0001-5612-1889 chanderson@usgs.gov","orcid":"https://orcid.org/0000-0001-5612-1889","contributorId":195521,"corporation":false,"usgs":true,"family":"Anderson","given":"Cody","email":"chanderson@usgs.gov","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":947618,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Clauson, Jeff 0000-0003-3406-4988 jclauson@usgs.gov","orcid":"https://orcid.org/0000-0003-3406-4988","contributorId":5230,"corporation":false,"usgs":true,"family":"Clauson","given":"Jeff","email":"jclauson@usgs.gov","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":true,"id":947619,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Thome, Kurt","contributorId":140792,"corporation":false,"usgs":false,"family":"Thome","given":"Kurt","email":"","affiliations":[{"id":7049,"text":"NASA Goddard Space Flight Center","active":true,"usgs":false}],"preferred":false,"id":947620,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Kaita, Ed","contributorId":251782,"corporation":false,"usgs":false,"family":"Kaita","given":"Ed","email":"","affiliations":[{"id":50397,"text":"SSAI","active":true,"usgs":false}],"preferred":false,"id":947621,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Angal, Amit","contributorId":360771,"corporation":false,"usgs":false,"family":"Angal","given":"Amit","affiliations":[{"id":78842,"text":"SSAI, under contract to NASA","active":true,"usgs":false}],"preferred":false,"id":947622,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Levy, Raviv","contributorId":131008,"corporation":false,"usgs":false,"family":"Levy","given":"Raviv","email":"","affiliations":[{"id":7209,"text":"SSAI / NASA / GSFC","active":true,"usgs":false}],"preferred":false,"id":947623,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Miller, Jeff","contributorId":204570,"corporation":false,"usgs":false,"family":"Miller","given":"Jeff","email":"","affiliations":[{"id":36245,"text":"NPS","active":true,"usgs":false}],"preferred":false,"id":947624,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Ding, Leibo","contributorId":330182,"corporation":false,"usgs":false,"family":"Ding","given":"Leibo","email":"","affiliations":[{"id":78842,"text":"SSAI, under contract to NASA","active":true,"usgs":false}],"preferred":false,"id":947625,"contributorType":{"id":1,"text":"Authors"},"rank":19},{"text":"Teixeira Pinto, Cibele","contributorId":357558,"corporation":false,"usgs":false,"family":"Teixeira Pinto","given":"Cibele","affiliations":[{"id":78842,"text":"SSAI, under contract to NASA","active":true,"usgs":false}],"preferred":false,"id":947626,"contributorType":{"id":1,"text":"Authors"},"rank":20}]}}
,{"id":70272642,"text":"70272642 - 2025 - Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys","interactions":[],"lastModifiedDate":"2025-12-02T17:21:47.13324","indexId":"70272642","displayToPublicDate":"2025-09-01T11:17:21","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3624,"text":"Transactions of the American Fisheries Society","active":true,"publicationSubtype":{"id":10}},"title":"Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys","docAbstract":"<div class=\" sec\"><div class=\"title\">Objective</div><p class=\"chapter-para\">The potential for environmental DNA (eDNA) to disperse widely from source organisms enables high detection efficiency but raises questions about eDNA's ability to differentiate fine-scale spatial patterns relative to conventional fish capture data.</p></div><div class=\" sec\"><div class=\"title\">Methods</div><p class=\"chapter-para\">We evaluate these questions in the St. Louis River estuary—a hydrologically and spatially complex coastal system within Lake Superior that supports a diverse assemblage of resident and migratory fish species—via comparison of eDNA metabarcoding (12S and 16S loci) to multigear capture survey data from 2 years and two seasons.</p></div><div class=\" sec\"><div class=\"title\">Results</div><p class=\"chapter-para\">The eDNA and capture surveys collectively yielded 68 fish species: 2 species detected only by capture, 27 detected only by eDNA, and 39 shared across both survey types but having generally higher occurrence frequencies with eDNA than capture. Six species detected only by eDNA were unexpected, having no prior records in the Lake Superior basin. Data from paired eDNA and capture stations showed little relationship between the two survey types, with capture yielding species at stations that eDNA did not, eDNA detecting species in different habitats and distant locations from any captures, and assemblage patterns homogenized in eDNA surveys relative to capture surveys.</p></div><div class=\" sec\"><div class=\"title\">Conclusions</div><p class=\"chapter-para\">Our study finds that eDNA is a sensitive tool for assessing species presence at the system scale but that capture surveys may better yield the fine-scale spatial distribution information of interest to fisheries and habitat managers, especially in spatially and hydrologically complex systems.</p></div>","language":"English","publisher":"Oxford Academic","doi":"10.1093/tafafs/vnaf036","usgsCitation":"Trebitz, A.S., Hoffman, J.C., Peterson, G.S., Hatzenbuhler, C.I., Pilgrim, E.M., Okum, S.L., Chadderton, W.L., Tucker, A.J., Bogyo, N., and Myers, J.T., 2025, Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys: Transactions of the American Fisheries Society, v. 154, no. 6, p. 657-674, https://doi.org/10.1093/tafafs/vnaf036.","productDescription":"18 p.","startPage":"657","endPage":"674","ipdsId":"IP-175590","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"links":[{"id":496999,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"154","issue":"6","noUsgsAuthors":false,"publicationDate":"2025-09-01","publicationStatus":"PW","contributors":{"authors":[{"text":"Trebitz, Anett S 0000-0002-0915-5610","orcid":"https://orcid.org/0000-0002-0915-5610","contributorId":257924,"corporation":false,"usgs":false,"family":"Trebitz","given":"Anett","email":"","middleInitial":"S","affiliations":[{"id":6784,"text":"US EPA","active":true,"usgs":false}],"preferred":false,"id":951089,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hoffman, Joel C. 0000-0002-5413-8799","orcid":"https://orcid.org/0000-0002-5413-8799","contributorId":363087,"corporation":false,"usgs":false,"family":"Hoffman","given":"Joel","middleInitial":"C.","affiliations":[{"id":6914,"text":"U.S. Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":951090,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Peterson, Gregory S. 0000-0001-5344-4551","orcid":"https://orcid.org/0000-0001-5344-4551","contributorId":363088,"corporation":false,"usgs":false,"family":"Peterson","given":"Gregory","middleInitial":"S.","affiliations":[{"id":6914,"text":"U.S. Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":951091,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hatzenbuhler, Chelsea I.","contributorId":363090,"corporation":false,"usgs":false,"family":"Hatzenbuhler","given":"Chelsea","middleInitial":"I.","affiliations":[{"id":65526,"text":"SpecPro Professional Services","active":true,"usgs":false}],"preferred":false,"id":951092,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Pilgrim, Erik M.","contributorId":363091,"corporation":false,"usgs":false,"family":"Pilgrim","given":"Erik","middleInitial":"M.","affiliations":[{"id":6914,"text":"U.S. Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":951093,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Okum, Sara L.","contributorId":363093,"corporation":false,"usgs":false,"family":"Okum","given":"Sara","middleInitial":"L.","affiliations":[{"id":6914,"text":"U.S. Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":951094,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Chadderton, W. Lindsay","contributorId":363095,"corporation":false,"usgs":false,"family":"Chadderton","given":"W.","middleInitial":"Lindsay","affiliations":[{"id":7041,"text":"The Nature Conservancy","active":true,"usgs":false}],"preferred":false,"id":951095,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Tucker, Andrew J.","contributorId":363097,"corporation":false,"usgs":false,"family":"Tucker","given":"Andrew","middleInitial":"J.","affiliations":[{"id":7041,"text":"The Nature Conservancy","active":true,"usgs":false}],"preferred":false,"id":951096,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Bogyo, Nicholas","contributorId":363102,"corporation":false,"usgs":false,"family":"Bogyo","given":"Nicholas","affiliations":[{"id":85668,"text":"1854 Treaty Authority","active":true,"usgs":false}],"preferred":false,"id":951097,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Myers, Jared Thomas 0009-0004-9362-8792","orcid":"https://orcid.org/0009-0004-9362-8792","contributorId":363104,"corporation":false,"usgs":true,"family":"Myers","given":"Jared","middleInitial":"Thomas","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":951098,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70268422,"text":"70268422 - 2025 - USGS water resource investigations and activities","interactions":[],"lastModifiedDate":"2026-03-16T15:30:22.044534","indexId":"70268422","displayToPublicDate":"2025-09-01T10:23:28","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":3,"text":"Organization Series"},"seriesTitle":{"id":156,"text":"Annual Report","active":false,"publicationSubtype":{"id":3}},"title":"USGS water resource investigations and activities","docAbstract":"<p>No abstract available.</p>","largerWorkType":{"id":18,"text":"Report"},"largerWorkTitle":"The 2024 annual report of the International Red River Watershed Board","largerWorkSubtype":{"id":3,"text":"Organization Series"},"language":"English","publisher":"International Joint Commission","usgsCitation":"Thomas, D., 2025, USGS water resource investigations and activities: Annual Report, v. 25, 15 p.","productDescription":"15 p.","startPage":"88","endPage":"102","ipdsId":"IP-179575","costCenters":[{"id":34685,"text":"Dakota Water Science Center","active":true,"usgs":true}],"links":[{"id":501179,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":501178,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://ijc.org/en/rrb/irrwb-annual-report-2024"}],"volume":"25","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Thomas, Daniel C 0009-0005-7051-9670","orcid":"https://orcid.org/0009-0005-7051-9670","contributorId":357351,"corporation":false,"usgs":true,"family":"Thomas","given":"Daniel C","affiliations":[{"id":34685,"text":"Dakota Water Science Center","active":true,"usgs":true}],"preferred":true,"id":941274,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
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