{"pageNumber":"565","pageRowStart":"14100","pageSize":"25","recordCount":184658,"records":[{"id":70216895,"text":"70216895 - 2020 - Quantifying and addressing the prevalence and bias of study designs in the environmental and social sciences","interactions":[],"lastModifiedDate":"2022-08-16T17:31:25.733964","indexId":"70216895","displayToPublicDate":"2020-12-11T08:17:38","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2842,"text":"Nature Communications","active":true,"publicationSubtype":{"id":10}},"title":"Quantifying and addressing the prevalence and bias of study designs in the environmental and social sciences","docAbstract":"<div id=\"Abs1-section\" class=\"c-article-section\"><div id=\"Abs1-content\" class=\"c-article-section__content\"><p>Building trust in science and evidence-based decision-making depends heavily on the credibility of studies and their findings. Researchers employ many different study designs that vary in their risk of bias to evaluate the true effect of interventions or impacts. Here, we empirically quantify, on a large scale, the prevalence of different study designs and the magnitude of bias in their estimates. Randomised designs and controlled observational designs with pre-intervention sampling were used by just 23% of intervention studies in biodiversity conservation, and 36% of intervention studies in social science. We demonstrate, through pairwise within-study comparisons across 49 environmental datasets, that these types of designs usually give less biased estimates than simpler observational designs. We propose a model-based approach to combine study estimates that may suffer from different levels of study design bias, discuss the implications for evidence synthesis, and how to facilitate the use of more credible study designs.</p></div></div><div id=\"Sec1-section\" class=\"c-article-section\"><br></div>","language":"English","publisher":"Nature","doi":"10.1038/s41467-020-20142-y","usgsCitation":"Christie, A.P., Abecasis, D., Adjeroud, M., Alonso, J.C., Amano, T., Anton, A., Baldigo, B.P., Barrientos, R., Bicknell, J.E., Buhl, D.A., Cebrian, J., Ceia, R.S., Cibils-Martina, L., Clarke, S., Claudet, J., Craig, M.D., Davoult, D., De Backer, A., Donovan, M., Eddy, T.D., Franca, F.M., Gardner, J.P., Harris, B.P., Huusko, A., Jones, I.L., Kelaher, B.P., Kotiaho, J.S., López-Baucells, A., Major, H.L., Maki-Petays, A., Martinez-Lopez, B., Martin, C.A., Martin, P.A., Mateos-Molina, D., McConnaughey, R.A., Meroni, M., Meyer, C.F., Mills, K., Montefalcone, M., Noreika, N., Palacin, C., Pande, A., Pitcher, C.R., Ponce, C., Rinella, M.J., Rocha, R., Ruiz-Delgado, M.C., Schmitter-Soto, J.J., Shaffer, J.A., Sharma, S., Sher, A.A., Stagnol, D., Stanley, T., Stokesbury, K.D., Torres, A., Tully, O., Vehanen, T., Watts, C., Zhao, Q., and Sutherland, W.J., 2020, Quantifying and addressing the prevalence and bias of study designs in the environmental and social sciences: Nature Communications, v. 11, 6377, 11 p., https://doi.org/10.1038/s41467-020-20142-y.","productDescription":"6377, 11 p.","ipdsId":"IP-112974","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":454671,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1038/s41467-020-20142-y","text":"Publisher Index Page"},{"id":381248,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"11","noUsgsAuthors":false,"publicationDate":"2020-12-11","publicationStatus":"PW","contributors":{"authors":[{"text":"Christie, Alec P. 0000-0002-8465-8410","orcid":"https://orcid.org/0000-0002-8465-8410","contributorId":245663,"corporation":false,"usgs":false,"family":"Christie","given":"Alec","email":"","middleInitial":"P.","affiliations":[{"id":49253,"text":"Department of Zoology, University of Cambridge, Cambridge,UK","active":true,"usgs":false}],"preferred":false,"id":806782,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Abecasis, David","contributorId":245664,"corporation":false,"usgs":false,"family":"Abecasis","given":"David","email":"","affiliations":[{"id":49254,"text":"Centre of Marine Sciences (CCMar), Universidade do Algarve, Campus de Gambelas, 8005-139 Faro, Portugal","active":true,"usgs":false}],"preferred":false,"id":806783,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Adjeroud, Mehdi","contributorId":245665,"corporation":false,"usgs":false,"family":"Adjeroud","given":"Mehdi","email":"","affiliations":[{"id":49255,"text":"Institut de Recherche pour le Développement (IRD), UMR 9220 ENTROPIE & Laboratoire d’Excellence CORAIL, Université de Perpignan Via Domitia, 52 avenue Paul Alduy, 66860 Perpignan, France","active":true,"usgs":false}],"preferred":false,"id":806784,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Alonso, Juan C.","contributorId":245666,"corporation":false,"usgs":false,"family":"Alonso","given":"Juan","email":"","middleInitial":"C.","affiliations":[{"id":49256,"text":"Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain","active":true,"usgs":false}],"preferred":false,"id":806785,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Amano, Tatsuya","contributorId":245667,"corporation":false,"usgs":false,"family":"Amano","given":"Tatsuya","affiliations":[{"id":49257,"text":"School of Biological Sciences, University of Queensland, Brisbane, 4072 Queensland, Australia","active":true,"usgs":false}],"preferred":false,"id":806786,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Anton, Alvaro","contributorId":245668,"corporation":false,"usgs":false,"family":"Anton","given":"Alvaro","email":"","affiliations":[{"id":49258,"text":"Education Faculty of Bilbao, University of the Basque Country (UPV/EHU). 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Fisheries &Wildlife, Michigan State University, East Lansing, Michigan 48823, USA","active":true,"usgs":false}],"preferred":false,"id":806836,"contributorType":{"id":1,"text":"Authors"},"rank":55},{"text":"Tully, Oliver","contributorId":245708,"corporation":false,"usgs":false,"family":"Tully","given":"Oliver","email":"","affiliations":[{"id":49263,"text":"Marine Institute, Rinville, Oranmore, Galway, Ireland","active":true,"usgs":false}],"preferred":false,"id":806837,"contributorType":{"id":1,"text":"Authors"},"rank":56},{"text":"Vehanen, Teppo","contributorId":245709,"corporation":false,"usgs":false,"family":"Vehanen","given":"Teppo","email":"","affiliations":[{"id":49294,"text":"Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland","active":true,"usgs":false}],"preferred":false,"id":806838,"contributorType":{"id":1,"text":"Authors"},"rank":57},{"text":"Watts, Corinne","contributorId":245710,"corporation":false,"usgs":false,"family":"Watts","given":"Corinne","email":"","affiliations":[{"id":49295,"text":"Manaaki Whenua – Landcare Research, Private Bag 3127, Hamilton 3216, New Zealand","active":true,"usgs":false}],"preferred":false,"id":806839,"contributorType":{"id":1,"text":"Authors"},"rank":58},{"text":"Zhao, Qingyuan","contributorId":245711,"corporation":false,"usgs":false,"family":"Zhao","given":"Qingyuan","email":"","affiliations":[{"id":49296,"text":"Statistical Laboratory, Department of Pure Mathematics and Mathematical Statistics, University of Cambridge, Wilberforce Road, Cambridge, CB3 0WB, UK","active":true,"usgs":false}],"preferred":false,"id":806840,"contributorType":{"id":1,"text":"Authors"},"rank":59},{"text":"Sutherland, William J.","contributorId":204319,"corporation":false,"usgs":false,"family":"Sutherland","given":"William","email":"","middleInitial":"J.","affiliations":[{"id":36918,"text":"Conservation Science Group, Department of Zoology, University of Cambridge, Cambridge CB2 3QZ, UK","active":true,"usgs":false}],"preferred":false,"id":806841,"contributorType":{"id":1,"text":"Authors"},"rank":60}]}}
,{"id":70217035,"text":"70217035 - 2020 - Characteristics of frequent dynamic triggering of microearthquakes in Southern California","interactions":[],"lastModifiedDate":"2021-02-05T12:58:49.518481","indexId":"70217035","displayToPublicDate":"2020-12-11T07:30:04","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2312,"text":"Journal of Geophysical Research","active":true,"publicationSubtype":{"id":10}},"title":"Characteristics of frequent dynamic triggering of microearthquakes in Southern California","docAbstract":"<div class=\"article-section__content en main\"><p>Dynamic triggering of earthquakes has been reported at various fault systems. The triggered earthquakes are thought to be caused either directly by dynamic stress changes due to the passing seismic waves, or indirectly by other nonlinear processes that are initiated by the passing waves. Distinguishing these physical mechanisms is difficult because of the general lack of high‐resolution earthquake catalogs and robust means to quantitatively evaluate triggering responses, particularly, delayed responses. Here we use the high‐resolution Quake Template Matching catalog in Southern California to systematically evaluate teleseismic dynamic triggering patterns in the San Jacinto Fault Zone and the Salton Sea Geothermal Field from 2008 to 2017. We develop a new statistical approach to identify triggered cases, finding that approximately 1 out of every 5 global M<sub>w</sub><span>&nbsp;</span>≥ 6 earthquakes dynamically trigger microearthquakes in Southern California. The triggering responses include both instantaneous and delayed triggering, showing a highly heterogeneous pattern and indicating possible evolving triggering thresholds. We do not observe a clear peak ground velocity triggering threshold that can differentiate triggering earthquakes from non‐triggering events, but there are subtle differences in the frequency content that may possibly differentiate the earthquakes. In contrast to the depth distribution of background seismicity, the identified triggered earthquakes tend to concentrate at the edges of the seismogenic zones. Although instantaneously triggered earthquakes are likely a result of dynamic Coulomb stress changes, the cases of delayed dynamic triggering are best explained by nonlinear triggering processes, including cyclic material fatigue, accelerated transient creep, and stochastic frictional heterogeneities.</p></div>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2020JB020820","usgsCitation":"Fan, W., Barbour, A.J., Cochran, E.S., and Lin, G., 2020, Characteristics of frequent dynamic triggering of microearthquakes in Southern California: Journal of Geophysical Research, v. 126, e2020JB020820, 28 p., https://doi.org/10.1029/2020JB020820.","productDescription":"e2020JB020820, 28 p.","ipdsId":"IP-121995","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":381716,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -120.234375,\n              32.58384932565662\n            ],\n            [\n              -113.90625,\n              32.58384932565662\n            ],\n            [\n              -113.90625,\n              34.813803317113155\n            ],\n            [\n              -120.234375,\n              34.813803317113155\n            ],\n            [\n              -120.234375,\n              32.58384932565662\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"126","noUsgsAuthors":false,"publicationDate":"2021-01-20","publicationStatus":"PW","contributors":{"authors":[{"text":"Fan, Wenyuan","contributorId":174007,"corporation":false,"usgs":false,"family":"Fan","given":"Wenyuan","email":"","affiliations":[{"id":6728,"text":"Scripps Inst Oceanography","active":true,"usgs":false}],"preferred":false,"id":807317,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Barbour, Andrew J. 0000-0002-6890-2452","orcid":"https://orcid.org/0000-0002-6890-2452","contributorId":215339,"corporation":false,"usgs":true,"family":"Barbour","given":"Andrew","middleInitial":"J.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":807318,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cochran, Elizabeth S. 0000-0003-2485-4484 ecochran@usgs.gov","orcid":"https://orcid.org/0000-0003-2485-4484","contributorId":2025,"corporation":false,"usgs":true,"family":"Cochran","given":"Elizabeth","email":"ecochran@usgs.gov","middleInitial":"S.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":807319,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lin, Guoqing","contributorId":168856,"corporation":false,"usgs":false,"family":"Lin","given":"Guoqing","affiliations":[{"id":5112,"text":"University of Miami","active":true,"usgs":false}],"preferred":false,"id":807320,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70216902,"text":"70216902 - 2020 - A Bayesian framework for assessing extinction risk based on ordinal categories of population condition and projected landscape change","interactions":[],"lastModifiedDate":"2020-12-16T12:42:33.284544","indexId":"70216902","displayToPublicDate":"2020-12-11T07:26:02","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1015,"text":"Biological Conservation","active":true,"publicationSubtype":{"id":10}},"title":"A Bayesian framework for assessing extinction risk based on ordinal categories of population condition and projected landscape change","docAbstract":"<div id=\"abstracts\" class=\"Abstracts u-font-serif\"><div id=\"ab0005\" class=\"abstract author\" lang=\"en\"><div id=\"as0005\"><p id=\"sp0035\">Many at-risk species lack standardized surveys across their range or quantitative data capable of detecting demographic trends. As a result, extinction risk assessments often rely on ordinal categories of risk based on explicit criteria or expert elicitation. This study demonstrates a Bayesian approach to assessing extinction risk based on this common data structure, using three freshwater mussel species being considered for listing under the US Endangered Species Act. The probability that a population is classified under each risk category was modeled as a function of projected landscape change using ordered probit regression, assuming observed categories reflect a latent, continuous probability of persistence. All three species were more likely than not (mean probability &gt;0.5) to be classified as extirpated or low condition throughout their range based on effects of urban development and hydrologic alteration. Spatial variation in estimates revealed strongholds and high-risk areas relevant to conservation decision making. Projected change in probabilities of each risk category based on multiple land-use and climate models was generally small relative to high baseline risk resulting from past landscape changes. Assessing extinction risk based on probabilities of ordinal condition as a function of landscape patterns may provide a flexible and robust approach for many at-risk taxa by adjusting species' demographic criteria to match relative risk categories, following standardized criteria, or using expert elicitation for data-deficient species. This approach provides decision makers with a useful measure of uncertainty around ordinal classifications and provides a framework for estimating future risk based on projections of anthropogenic stressors.</p></div></div></div><ul id=\"issue-navigation\" class=\"issue-navigation u-margin-s-bottom u-bg-grey1\"></ul>","language":"English","publisher":"Elsevier","doi":"10.1016/j.biocon.2020.108866","usgsCitation":"Fitzgerald, D.B., Henderson, A.R., Maloney, K.O., Freeman, M., Young, J.A., Rosenberger, A.E., Kazyak, D., and Smith, D.R., 2020, A Bayesian framework for assessing extinction risk based on ordinal categories of population condition and projected landscape change: Biological Conservation, v. 253, 108866, 10 p., https://doi.org/10.1016/j.biocon.2020.108866.","productDescription":"108866, 10 p.","ipdsId":"IP-114983","costCenters":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true},{"id":531,"text":"Patuxent Wildlife Research 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kmaloney@usgs.gov","orcid":"https://orcid.org/0000-0003-2304-0745","contributorId":4636,"corporation":false,"usgs":true,"family":"Maloney","given":"Kelly","email":"kmaloney@usgs.gov","middleInitial":"O.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":806879,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Freeman, Mary 0000-0001-7615-6923 mcfreeman@usgs.gov","orcid":"https://orcid.org/0000-0001-7615-6923","contributorId":3528,"corporation":false,"usgs":true,"family":"Freeman","given":"Mary","email":"mcfreeman@usgs.gov","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":806880,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Young, John A. 0000-0002-4500-3673 jyoung@usgs.gov","orcid":"https://orcid.org/0000-0002-4500-3673","contributorId":3777,"corporation":false,"usgs":true,"family":"Young","given":"John","email":"jyoung@usgs.gov","middleInitial":"A.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":806881,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Rosenberger, Amanda E. 0000-0002-5520-8349 arosenberger@usgs.gov","orcid":"https://orcid.org/0000-0002-5520-8349","contributorId":5581,"corporation":false,"usgs":true,"family":"Rosenberger","given":"Amanda","email":"arosenberger@usgs.gov","middleInitial":"E.","affiliations":[{"id":396,"text":"Missouri Water Science Center","active":true,"usgs":true},{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":806882,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Kazyak, David C. 0000-0001-9860-4045","orcid":"https://orcid.org/0000-0001-9860-4045","contributorId":202481,"corporation":false,"usgs":true,"family":"Kazyak","given":"David C.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":806883,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Smith, David R. 0000-0001-6074-9257 drsmith@usgs.gov","orcid":"https://orcid.org/0000-0001-6074-9257","contributorId":168442,"corporation":false,"usgs":true,"family":"Smith","given":"David","email":"drsmith@usgs.gov","middleInitial":"R.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":806884,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70217214,"text":"70217214 - 2020 - Soil organic carbon development and turnover in natural and disturbed salt marsh environments","interactions":[],"lastModifiedDate":"2021-02-05T13:00:21.550952","indexId":"70217214","displayToPublicDate":"2020-12-11T07:17:26","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1807,"text":"Geophysical Research Letters","active":true,"publicationSubtype":{"id":10}},"title":"Soil organic carbon development and turnover in natural and disturbed salt marsh environments","docAbstract":"<p>Salt marsh survival with sea‐level rise (SLR) increasingly relies on soil organic carbon (SOC) accumulation and preservation. Using a novel combination of geochemical approaches, we characterized fine SOC (≤1 mm) supporting marsh elevation maintenance. Overlaying thermal reactivity, source (δ<sup>13</sup>C), and age (F<sup>14</sup>C) information demonstrates several processes contributing to soil development: marsh grass production, redeposition of eroded material, and microbial reworking. Redeposition of old carbon, likely from creekbanks, represented ∼9‐17% of shallow SOC (≤26 cm), indicating that this process may become increasingly important with SLR. Soils stored marsh grass‐derived compounds with a range of reactivities that were reworked over centuries‐to‐millennia. Decomposition decreases SOC thermal reactivity throughout the soil column while the decades‐long disturbance of ponding accelerated this shift in surface horizons. Empirically derived estimates of SOC turnover based on geochemical composition spanned a wide range (640–9,951 years) and have the potential to inform future predictions of marsh ecosystem evolution.</p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2020GL090287","usgsCitation":"Luk, S., Todd-Brown, K., Eagle, M.J., McNichol, A., Sanderman, J., Gosselin, K., and Spivak, A.C., 2020, Soil organic carbon development and turnover in natural and disturbed salt marsh environments: Geophysical Research Letters, v. 48, e2020GL090287, 11 p., https://doi.org/10.1029/2020GL090287.","productDescription":"e2020GL090287, 11 p.","ipdsId":"IP-124399","costCenters":[{"id":678,"text":"Woods Hole Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":454676,"rank":1,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1029/2020gl090287","text":"External Repository"},{"id":436699,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9HIOWKT","text":"USGS data release","linkHelpText":"Collection, analysis, and age-dating of sediment cores from a salt marsh platform and ponds, Rowley, Massachusetts, 2014-15"},{"id":382124,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Massachusetts","otherGeospatial":"Plum Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -70.77667236328125,\n              42.69984747212718\n            ],\n            [\n              -70.7687759399414,\n              42.7028751605754\n            ],\n            [\n              -70.79418182373047,\n              42.75709622397268\n       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Katherine","contributorId":240705,"corporation":false,"usgs":false,"family":"Todd-Brown","given":"Katherine","affiliations":[{"id":34255,"text":"Wilfred Laurier University","active":true,"usgs":false}],"preferred":false,"id":808032,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Eagle, Meagan J. 0000-0001-5072-2755 meagle@usgs.gov","orcid":"https://orcid.org/0000-0001-5072-2755","contributorId":242890,"corporation":false,"usgs":true,"family":"Eagle","given":"Meagan","email":"meagle@usgs.gov","middleInitial":"J.","affiliations":[{"id":678,"text":"Woods Hole Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":808033,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McNichol, Ann","contributorId":247612,"corporation":false,"usgs":false,"family":"McNichol","given":"Ann","affiliations":[{"id":49591,"text":"Marine Geology and Geophysics Department, Woods Hole Oceanographic 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,{"id":70216869,"text":"ofr20201117 - 2020 - Environmental data associated with sites infected with white-nose syndrome (WNS) before October 2011 in North America","interactions":[],"lastModifiedDate":"2020-12-14T17:12:04.819056","indexId":"ofr20201117","displayToPublicDate":"2020-12-10T16:30:00","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-1117","displayTitle":"Environmental Data Associated With Sites Infected With White-Nose Syndrome (WNS) Before October 2011 in North America","title":"Environmental data associated with sites infected with white-nose syndrome (WNS) before October 2011 in North America","docAbstract":"<p>White-nose syndrome (WNS) is an emerging infectious disease of hibernating bats caused by a fungus previously known as <i>Geomyces destructans</i> and reclassified as <i>Pseudogymnoascus destructans</i>. The disease was first documented in 2006 in New York, has since spread across much of eastern North America, and as of January 2012, had caused the death of at least 5.7 to 6.7 million bats. Previous studies have suggested that environmental conditions play a strong role in WNS mortality. However, to predict where and when the disease will spread to new sites is difficult because detailed site information and associated environmental data are notably sparse. This paper presents a chronology of where and when WNS was detected in North America before October 2011 and indicates who reported the infections. This paper also presents available data on WNS-infected site elevation, geology, sediment chemistry and biota, air temperature, and relative humidity.</p><p>By the end of September 2011, at least 241 known WNS-infected sites were in North America and the number of infected sites per winter season had increased each year since 2006. The progressive increase in the number of infected sites per winter season suggests that the number of WNS infections had not peaked as of the 2010–11 winter season. WNS-infected sites include caves and mines, but the sites are not restricted by elevation, lithology, or strata age. Available data on site sediment chemistry are sparse but present a wide range of values, suggesting that caves and mines may contain a great range of microenvironments that are still poorly understood. The distribution of WNS may be restricted by air temperature and relative humidity. Published air temperature values from WNS-infected sites range from −15 to 33 degrees Celsius (but most temperature values are less than 20 degrees Celsius), and relative humidity values range from 50 to 100 percent. The spread of WNS may be restricted by a cave or mine temperature threshold of 20 degrees Celsius (which is likely to be south of most of the continental United States) and by some yet to be determined threshold of low relative humidity. These results indicate that WNS may not spread south into Mexico or to Puerto Rico.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20201117","usgsCitation":"Swezey, C.S., and Garrity, C.P., 2020, Environmental data associated with sites infected with white-nose syndrome (WNS) before October 2011 in North America: U.S. Geological Survey Open-File Report 2020–1117, 67 p., https://doi.org/10.3133/ofr20201117.","productDescription":"x, 67 p.","numberOfPages":"67","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-117667","costCenters":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"links":[{"id":381184,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2020/1117/coverthb.jpg"},{"id":381185,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2020/1117/ofr20201117.pdf","text":"Report","size":"19.5 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Sites</li><li>Discussion</li><li>Summary</li><li>Acknowledgments</li><li>References</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2020-12-10","noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Swezey, Christopher S. 0000-0003-4019-9264 cswezey@usgs.gov","orcid":"https://orcid.org/0000-0003-4019-9264","contributorId":173033,"corporation":false,"usgs":true,"family":"Swezey","given":"Christopher","email":"cswezey@usgs.gov","middleInitial":"S.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true},{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true},{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"preferred":true,"id":806660,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Garrity, Christopher P. 0000-0002-5565-1818 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,{"id":70216742,"text":"ofr20201120 - 2020 - Groundwater quality and groundwater levels in Dougherty County, Georgia, April 2019 through March 2020","interactions":[],"lastModifiedDate":"2020-12-11T13:42:49.891919","indexId":"ofr20201120","displayToPublicDate":"2020-12-10T14:45:00","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-1120","displayTitle":"Groundwater Quality and Groundwater Levels in Dougherty County, Georgia, April 2019 Through March 2020","title":"Groundwater quality and groundwater levels in Dougherty County, Georgia, April 2019 through March 2020","docAbstract":"<p>The Upper Floridan aquifer is the uppermost, reliable aquifer in southwest Georgia. The aquifer lies on top of the Claiborne, Clayton, and Cretaceous aquifers, all of which exhibited water level declines in the 1960s and 1970s. The U.S. Geological Survey has been working cooperatively with Albany Utilities to monitor groundwater quality and availability in these aquifers since 1977.</p><p>During January 2020, nine wells were sampled—six for anions, metals, and nitrate plus nitrite as nitrogen, and three for anions, metals, and pesticides. Nitrate plus nitrite as nitrogen concentrations ranged from 2.4 milligrams per liter (mg/L) to 10.4 mg/L, and no pesticides were detected. Nitrate plus nitrite as nitrogen concentrations in well 12L277, open to the Upper Floridan aquifer, have been above the U.S. Environmental Protection Agency Maximum Contaminant Level of 10 mg/L for nitrates in drinking water since 2014.</p><p>Flow direction in the Upper Floridan aquifer is to the south and toward the Flint River. Water levels varied during the past year above and below period of record median values. Water levels in the Upper Floridan aquifer were primarily above median levels. Water levels in the Claiborne aquifer were above median levels, whereas water levels in the Clayton and Cretaceous aquifers were below median levels.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20201120","collaboration":"Prepared in cooperation with Albany Utilities","usgsCitation":"Gordon, D.W., 2020, Groundwater quality and groundwater levels in Dougherty County, Georgia, April 2019 through March 2020: U.S. Geological Survey Open-File Report 2020–1120, 12 p., https://doi.org/10.3133/ofr20201120.","productDescription":"vi, 12 p.","numberOfPages":"12","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-118275","costCenters":[{"id":13634,"text":"South Atlantic Water Science 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<a href=\"https://www.usgs.gov/centers/sa-water\" data-mce-href=\"https://www.usgs.gov/centers/sa-water\">South Atlantic Water Science Center</a><br>U.S. Geological Survey<br>1770 Corporate Drive, Suite 500<br>Norcross, GA 30093</p><p><a href=\"../contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Groundwater Quality</li><li>Groundwater Levels</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2020-12-10","noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Gordon, Debbie W. 0000-0002-5195-6657 dwarner@usgs.gov","orcid":"https://orcid.org/0000-0002-5195-6657","contributorId":194128,"corporation":false,"usgs":true,"family":"Gordon","given":"Debbie W.","email":"dwarner@usgs.gov","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"preferred":true,"id":806028,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70228455,"text":"70228455 - 2020 - Effects of density reduction on age-specific growth of stream-dwelling Brown Trout","interactions":[],"lastModifiedDate":"2022-02-11T19:57:10.970455","indexId":"70228455","displayToPublicDate":"2020-12-10T13:50:53","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2886,"text":"North American Journal of Fisheries Management","active":true,"publicationSubtype":{"id":10}},"title":"Effects of density reduction on age-specific growth of stream-dwelling Brown Trout","docAbstract":"<p><span>Density-dependent growth has been well documented among stream-dwelling Brown Trout&nbsp;</span><i>Salmo trutta</i><span>&nbsp;populations. In Spearfish Creek, South Dakota, biomass of adult Brown Trout (&gt;200 mm) is about three times greater than that reported for similar Black Hills streams, whereas the mean length of adult fish is about 30% less. Here, we evaluate density reduction as a management tool for improving the growth rate of stream-dwelling Brown Trout. We compared age-specific growth of wild Brown Trout in stream sections receiving 50% reductions in fish abundance (removal sections) to that of fish in sections containing natural densities (control sections). Annual growth in length and weight of older Brown Trout (age &gt; 2) was greater in removal sections compared to control sections, particularly among fish between 230 and 280 mm TL (ages 3–4). We attribute the growth response to constraints imposed by food availability and the strong feeding hierarchies, characteristic of larger (older) Brown Trout. Data collected from PIT-tagged fish that were recaptured 2 years after fish removal efforts revealed that growth responses owing to density reduction likely did not extend beyond 1 year. Nonetheless, among cohorts that showed improved growth after the first year, we found that their growth advantage was sustained into the second year. At removal sections, age-3 and older Brown Trout that experienced greater growth after 1 year were larger than fish from control sections 2 years later at age 5 and older. Identification of cohort(s) for which density-dependent growth is most pronounced could help to focus efforts on targeted reduction of specific fish sizes/ages that minimize the cost–benefit ratio of fish removal efforts.</span></p>","language":"English","publisher":"American Fisheries Society","doi":"10.1002/nafm.10535","usgsCitation":"Rehm, T.R., Chipps, S.R., and Davis, J., 2020, Effects of density reduction on age-specific growth of stream-dwelling Brown Trout: North American Journal of Fisheries Management, v. 40, no. 6, p. 1355-1366, https://doi.org/10.1002/nafm.10535.","productDescription":"12 p.","startPage":"1355","endPage":"1366","ipdsId":"IP-115916","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":395863,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"South Dakota","otherGeospatial":"Spearfish Creek","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -103.9306640625,\n              44.46662112356575\n            ],\n            [\n              -103.79196166992188,\n              44.46662112356575\n            ],\n            [\n              -103.79196166992188,\n              44.538121733294545\n            ],\n            [\n              -103.9306640625,\n              44.538121733294545\n            ],\n            [\n              -103.9306640625,\n              44.46662112356575\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"40","issue":"6","noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Rehm, Travis R.","contributorId":275829,"corporation":false,"usgs":false,"family":"Rehm","given":"Travis","email":"","middleInitial":"R.","affiliations":[{"id":5089,"text":"South Dakota State University","active":true,"usgs":false}],"preferred":false,"id":834345,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chipps, Steven R. 0000-0001-6511-7582 steve_chipps@usgs.gov","orcid":"https://orcid.org/0000-0001-6511-7582","contributorId":2243,"corporation":false,"usgs":true,"family":"Chipps","given":"Steven","email":"steve_chipps@usgs.gov","middleInitial":"R.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":834344,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Davis, Jacob L.","contributorId":275831,"corporation":false,"usgs":false,"family":"Davis","given":"Jacob L.","affiliations":[{"id":56698,"text":"South Dakota Department of Game, Fish, and Parks","active":true,"usgs":false}],"preferred":false,"id":834346,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70216787,"text":"70216787 - 2020 - Creating annotations for web ontology language ontology generated from relational databases","interactions":[],"lastModifiedDate":"2021-10-01T14:22:39.432326","indexId":"70216787","displayToPublicDate":"2020-12-10T09:20:34","publicationYear":"2020","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"Creating annotations for web ontology language ontology generated from relational databases","docAbstract":"<p><span>Many approaches that have been proposed that allow users to create a Web Ontology Language (OWL) ontology from a relational database fail to include metadata that are inherent to the database tables. Without metadata, the resulting ontology lacks annotation properties. These properties are key when performing ontology alignment. This paper proposes a method to include relevant metadata through annotation properties to OWL ontologies, which furthers the ability to integrate and use data from multiple unique ontologies. The described method is applied to geospatial data collected from The National Map, a data source hosted by the U. S. Geological Survey. Following that method, an ontology was manually created that used the metadata from The National Map. Because a manual approach is prone to human error, an automated approach to storing and converting metadata into annotation properties is discussed.</span></p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Knowledge graphs and semantic web. KGSWC 2020","largerWorkSubtype":{"id":12,"text":"Conference publication"},"conferenceTitle":"Second Iberoamerican Conference and First Indo-American Conference, KGSWC 2020","conferenceDate":"Nov 26–27, 2020","conferenceLocation":"Mérida, Mexico","language":"English","publisher":"Springer","doi":"10.1007/978-3-030-65384-2_4","usgsCitation":"Wagner, M.E., Fry, T.E., Bourquin, J.J., and Varanka, D.E., 2020, Creating annotations for web ontology language ontology generated from relational databases, <i>in</i> Knowledge graphs and semantic web. KGSWC 2020, Mérida, Mexico, Nov 26–27, 2020, p. 45-60, https://doi.org/10.1007/978-3-030-65384-2_4.","productDescription":"16 p.","startPage":"45","endPage":"60","ipdsId":"IP-120265","costCenters":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"links":[{"id":390118,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Wagner, Matthew Edward 0000-0002-3987-072X","orcid":"https://orcid.org/0000-0002-3987-072X","contributorId":245472,"corporation":false,"usgs":true,"family":"Wagner","given":"Matthew","email":"","middleInitial":"Edward","affiliations":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"preferred":true,"id":806256,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Fry, Tanner Edward 0000-0001-9828-0394","orcid":"https://orcid.org/0000-0001-9828-0394","contributorId":245473,"corporation":false,"usgs":true,"family":"Fry","given":"Tanner","email":"","middleInitial":"Edward","affiliations":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"preferred":true,"id":806257,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bourquin, Jacques Jules 0000-0001-8376-138X","orcid":"https://orcid.org/0000-0001-8376-138X","contributorId":245474,"corporation":false,"usgs":true,"family":"Bourquin","given":"Jacques","email":"","middleInitial":"Jules","affiliations":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true}],"preferred":true,"id":806258,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Varanka, Dalia E. 0000-0003-2857-9600 dvaranka@usgs.gov","orcid":"https://orcid.org/0000-0003-2857-9600","contributorId":1296,"corporation":false,"usgs":true,"family":"Varanka","given":"Dalia","email":"dvaranka@usgs.gov","middleInitial":"E.","affiliations":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true},{"id":404,"text":"NGTOC Rolla","active":true,"usgs":true}],"preferred":true,"id":806259,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70216894,"text":"70216894 - 2020 - Cretaceous to Oligocene magmatic and tectonic evolution of the western Alaska Range: Insights from U-Pb and 40Ar/39Ar geochronology","interactions":[],"lastModifiedDate":"2024-01-04T01:20:22.926672","indexId":"70216894","displayToPublicDate":"2020-12-10T08:30:43","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1820,"text":"Geosphere","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Cretaceous to Oligocene magmatic and tectonic evolution of the western Alaska Range: Insights from U-Pb and <sup>40</sup>Ar/<sup>39</sup>Ar geochronology","title":"Cretaceous to Oligocene magmatic and tectonic evolution of the western Alaska Range: Insights from U-Pb and 40Ar/39Ar geochronology","docAbstract":"<div class=\"article-section-wrapper js-article-section js-content-section  \"><p><span>New U-Pb and&nbsp;</span><sup>40</sup><span>Ar/</span><sup>39</sup><span>Ar ages integrated with geologic mapping and observations across the western Alaska Range constrain the distribution and tectonic setting of Cretaceous to Oligocene magmatism along an evolving accretionary plate margin in south-central Alaska. These rocks were emplaced across basement domains that include Neoproterozoic to Jurassic carbonate and siliciclastic strata of the Farewell terrane, Triassic and Jurassic plutonic and volcanic rocks of the Peninsular terrane, and Jurassic and Cretaceous siliciclastic strata of the Kahiltna assemblage. Plutonic rocks of different ages also host economic mineralization including intrusion-related Au, porphyry Cu-Mo-Au, polymetallic veins and skarns, and peralkaline intrusion-related rare-earth elements. The oldest intrusive suites were emplaced ca. 104–80 Ma into the Peninsular terrane only prior to final accretion. Deformation of the northern Kahiltna succession and underlying Farewell terrane occurred at ca. 97 Ma, and more widespread deformation ca. 80 Ma involved south-vergent folding and thrusting of the Kahiltna assemblage that records collisional accretion of the Peninsular-Wrangellia terrane and juxtaposition of sediment wedges formed on the inboard and outboard terranes. More widespread magmatism ca. 75–55 Ma occurred in two general pulses, each having distinct styles of localized deformation. Circa 75–65 Ma plutons were emplaced in a transpressional setting and stitch the accreted Peninsular and Wrangellia terranes to the Farewell terrane. Circa 65–55 Ma magmatism occurred across the entire range and extends for more than 200 km inboard from the inferred position of the continental margin. The Paleocene plutonic suite generally reflects shallower emplacement depths relative to older suites and is associated with more abundant andesitic to rhyolitic volcanic rocks. Deformation ca. 58–56 Ma was concentrated along two high-strain zones, the most prominent of which is 1 km wide, strikes east-northeast, and accommodated dextral oblique motion. Emplacement of widespread intermediate to mafic dikes ca. 59–51 Ma occurred before a notable magmatic lull from ca. 51–44 Ma reflecting a late Paleocene to early Eocene slab window. Magmatism resumed ca. 44 Ma, recording the transition from slab window to renewed subduction that formed the Aleutian-Meshik arc to the southwest. In the western Alaska Range, Eocene magmatism included emplacement of the elongate north-south Merrill Pass pluton and large volumes of ca. 44–37 Ma andesitic flows, tuffs, and lahar deposits. Finally, a latest Eocene to Oligocene magmatic pulse involved emplacement of a compositionally variable but spatially concentrated suite of magmas ranging from gabbro to peralkaline granite ca. 35–26 Ma, followed by waning magmatism that coincided with initiation of Yakutat shallow-slab subduction. Cretaceous to Oligocene magmatism throughout the western Alaska Range collectively records terrane accretion, translation, and integration together with evolving subduction dynamics that have shaped the southern Alaska margin since the middle Mesozoic.</span></p></div>","language":"English","publisher":"Geological Society of America","doi":"10.1130/GES02303.1","usgsCitation":"Jones, J.V., Todd, E., Box, S.E., Haeussler, P., Holm-Denoma, C., Karl, S., Graham, G.E., Bradley, D., Kylander-Clark, A., Friedman, R.M., and Layer, P.W., 2020, Cretaceous to Oligocene magmatic and tectonic evolution of the western Alaska Range: Insights from U-Pb and 40Ar/39Ar geochronology: Geosphere, v. 17, no. 1, p. 118-153, https://doi.org/10.1130/GES02303.1.","productDescription":"36 p.; 3 Data Releases","startPage":"118","endPage":"153","ipdsId":"IP-121749","costCenters":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true},{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"links":[{"id":454681,"rank":3,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1130/ges02303.1","text":"Publisher Index Page"},{"id":489648,"rank":4,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P99EUXTS","text":"USGS data release","linkHelpText":"Whole Rock Major and Trace Element Chemistry for Igneous and Sedimentary Rocks from the Western Alaska Range, Alaska"},{"id":436702,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9RRTBAO","text":"USGS data release","linkHelpText":"U-Pb Isotopic Data and Ages of Detrital Zircon from Selected Rocks from northern Yukon, Canada"},{"id":436701,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9534J6R","text":"USGS data release","linkHelpText":"Whole Rock Major and Trace Element Chemistry for Igneous Rocks from Tyonek, Lime Hills, Talkeetna, McGrath, and Lake Clark Quadrangles, Western Alaska Range, Alaska"},{"id":436700,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P92ZOY4D","text":"USGS data release","linkHelpText":" U-Pb and 40Ar/39Ar Geochronologic Data for Selected Rocks from the Western Alaska Range, Alaska"},{"id":381249,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","otherGeospatial":"western Alaska Range","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -175,\n              54\n            ],\n            [\n              -145,\n              54\n            ],\n            [\n              -145,\n              63\n            ],\n            [\n              -175,\n              63\n            ],\n            [\n              -175,\n              54\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"17","issue":"1","noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Jones, James V. III 0000-0002-6602-5935 jvjones@usgs.gov","orcid":"https://orcid.org/0000-0002-6602-5935","contributorId":201245,"corporation":false,"usgs":true,"family":"Jones","given":"James","suffix":"III","email":"jvjones@usgs.gov","middleInitial":"V.","affiliations":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":806771,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Todd, Erin 0000-0002-4871-9730 etodd@usgs.gov","orcid":"https://orcid.org/0000-0002-4871-9730","contributorId":202811,"corporation":false,"usgs":true,"family":"Todd","given":"Erin","email":"etodd@usgs.gov","affiliations":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":806772,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Box, Stephen E. 0000-0002-5268-8375 sbox@usgs.gov","orcid":"https://orcid.org/0000-0002-5268-8375","contributorId":1843,"corporation":false,"usgs":true,"family":"Box","given":"Stephen","email":"sbox@usgs.gov","middleInitial":"E.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":806773,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Haeussler, Peter J. 0000-0002-1503-6247","orcid":"https://orcid.org/0000-0002-1503-6247","contributorId":219956,"corporation":false,"usgs":true,"family":"Haeussler","given":"Peter J.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":806774,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Holm-Denoma, Christopher S. 0000-0003-3229-5440","orcid":"https://orcid.org/0000-0003-3229-5440","contributorId":219763,"corporation":false,"usgs":true,"family":"Holm-Denoma","given":"Christopher S.","affiliations":[{"id":35995,"text":"Geology, Geophysics, and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":806775,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Karl, Susan M. 0000-0003-1559-7826","orcid":"https://orcid.org/0000-0003-1559-7826","contributorId":225408,"corporation":false,"usgs":true,"family":"Karl","given":"Susan M.","affiliations":[{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":806776,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Graham, Garth E. 0000-0003-0657-0365 ggraham@usgs.gov","orcid":"https://orcid.org/0000-0003-0657-0365","contributorId":1031,"corporation":false,"usgs":true,"family":"Graham","given":"Garth","email":"ggraham@usgs.gov","middleInitial":"E.","affiliations":[{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true},{"id":35995,"text":"Geology, Geophysics, and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":806777,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Bradley, Dwight 0000-0001-9116-5289 bradleyorchard2@gmail.com","orcid":"https://orcid.org/0000-0001-9116-5289","contributorId":2358,"corporation":false,"usgs":true,"family":"Bradley","given":"Dwight","email":"bradleyorchard2@gmail.com","affiliations":[{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":119,"text":"Alaska Science Center Geology Minerals","active":true,"usgs":true}],"preferred":true,"id":806778,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Kylander-Clark, Andrew R.C.","contributorId":243310,"corporation":false,"usgs":false,"family":"Kylander-Clark","given":"Andrew R.C.","affiliations":[],"preferred":false,"id":806779,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Friedman, Richard M.","contributorId":141227,"corporation":false,"usgs":false,"family":"Friedman","given":"Richard","email":"","middleInitial":"M.","affiliations":[{"id":13720,"text":"Department of Earth and Ocean Sciences University of British Columbia","active":true,"usgs":false}],"preferred":false,"id":806780,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Layer, Paul W.","contributorId":245662,"corporation":false,"usgs":false,"family":"Layer","given":"Paul","email":"","middleInitial":"W.","affiliations":[{"id":6752,"text":"University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":806781,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70216690,"text":"sir20205113 - 2020 - Interpretation of hydrogeologic data to support groundwater management, Bazile Groundwater Management Area, northeast Nebraska, 2019—A case demonstration of the Nebraska Geocloud","interactions":[],"lastModifiedDate":"2020-12-22T13:00:35.997799","indexId":"sir20205113","displayToPublicDate":"2020-12-10T07:57:47","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-5113","displayTitle":"Interpretation of Hydrogeologic Data to Support Groundwater Management, Bazile Groundwater Management Area, Northeast Nebraska, 2019—A Case Demonstration of the Nebraska Geocloud","title":"Interpretation of hydrogeologic data to support groundwater management, Bazile Groundwater Management Area, northeast Nebraska, 2019—A case demonstration of the Nebraska Geocloud","docAbstract":"<p>Nitrate, age tracer, and continuous groundwater-level data were interpreted in conjunction with airborne electromagnetic (AEM) survey data to understand the movement of nitrate within the Bazile Groundwater Management Area (BGMA) in northeastern Nebraska. Previously published age tracer data and nitrate data indicated vertical stratification of groundwater quality. Younger groundwater sampled within shallow parts of the aquifer had higher concentrations of nitrate, with 70 percent exceeding the U.S. Environmental Protection Agency maximum contaminant level of 10 milligrams per liter. In contrast, groundwater sampled from deeper parts of the aquifer indicated that nitrate concentrations were less than 2 milligrams per liter and that groundwater likely recharged prior to widespread use of commercial fertilizer.</p><p>The hydrostratigraphic interpretation of AEM profiles indicated that shallow and deep monitoring wells were often screened within the same homogenous zone of aquifer material. In contrast, test-hole logs indicated that there often are fine-grained layers within these homogenous zones that separate the shallow and deep monitoring well screens, but these fine-grained layers are not detected by the AEM technique because of decreased resolution of the AEM technique with depth.</p><p>The stratification of groundwater ages and nitrate concentrations likely was caused by groundwater-flow paths of different length, location and time of recharge, and denitrification. Within paleochannels interpreted from AEM and test-hole data, pesticides detected in groundwater generally coincide with elevated nitrate concentrations. Continuous groundwater-level data from four monitoring well nests indicated that groundwater pumping can impose or increase downward hydraulic gradients and facilitate the downward movement of nitrate into deeper parts of the High Plains aquifer. Given the density of irrigation wells within the BGMA, this effect on the hydraulic gradient is likely prevalent in other areas of the BGMA. Understanding seasonal water-level changes can allow water managers to better predict and assess the hydraulic gradient and the vulnerability of groundwater in deeper parts of the High Plains aquifer.</p><p>Nitrate, age tracer, and continuous groundwater-level data within the BGMA were interpreted in conjunction with AEM data as a case demonstration of the Nebraska Geocloud. The Nebraska Geocloud was initiated to protect taxpayer investments in AEM data collection and realize maximum benefit of these data by creating a publicly available, online digital database for long-term data storage. The Lower Platte North, Lower Platte South, Papio-Missouri River, Nemaha, Lower Loup, Central Platte, Upper Elkhorn, Lower Elkhorn, Lower Niobrara, and Lewis and Clark Natural Resources Districts; the University of Nebraska-Lincoln Conservation and Survey Division, Nebraska Natural Resources Commission, Nebraska Department of Natural Resources; and the U.S. Geological Survey entered a cooperative agreement to begin a program of data management and research aimed at understanding the best use of AEM for groundwater sustainability and management. Resulting case-study interpretations are provided to guide use of the Nebraska Geocloud to assess water-quality conditions and can be used by water managers and staff to address applicable water resource problems.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20205113","collaboration":"Prepared in cooperation with the Nebraska Natural Resources Commission; Nebraska Department of Natural Resources; and Lower Platte North, Lower Platte South, Papio-Missouri River, Nemaha, Lower Loup, Central Platte, Upper Elkhorn, Lower Elkhorn, Lower Niobrara, and Lewis and Clark Natural Resources Districts","usgsCitation":"Hobza, C.M., and Steele, G.V., 2020, Interpretation of hydrogeologic data to support groundwater management, Bazile Groundwater Management Area, northeast Nebraska, 2019—A case demonstration of the Nebraska Geocloud (ver. 1.1, December 15, 2020): U.S. Geological Survey Scientific Investigations Report 2020–5113, 46 p., https://doi.org/10.3133/sir20205113.","productDescription":"Report: viii, 45 p.; Tables: 4, 5, and 6 (.xlsx and .csv); Data Release; Version History","numberOfPages":"58","onlineOnly":"Y","additionalOnlineFiles":"Y","ipdsId":"IP-112495","costCenters":[{"id":464,"text":"Nebraska Water Science Center","active":true,"usgs":true}],"links":[{"id":380917,"rank":7,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113_table6.xlsx","text":"Table 6","size":"16.6 kB","linkFileType":{"id":3,"text":"xlsx"},"description":"SIR 2020–5113 Table 6","linkHelpText":"— Pesticide concentration, nitrate concentration, and calculated apparent groundwater ages for sampled monitoring and irrigation wells with detectable concentrations of pesticides, 1995–2005"},{"id":380915,"rank":5,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113_table5.xlsx","text":"Table 5","size":"23.2 kB","linkFileType":{"id":3,"text":"xlsx"},"description":"SIR 2020–5113 Table 5","linkHelpText":"— Summary of selected water-quality data and groundwater age estimates from wells sampled within the Bazile Groundwater Management Area, 2000–17"},{"id":380914,"rank":4,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113_table4.csv","text":"Table 4","size":"6.47 kB","linkFileType":{"id":7,"text":"csv"},"description":"SIR 2020–5113 Table 4","linkHelpText":"— Monitoring wells completed in the High Plains aquifer where continuous water-level data were recorded within the Bazile Groundwater Management Area, 2013–18"},{"id":380913,"rank":3,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113_table4.xlsx","text":"Table 4","size":"17.9 kB","linkFileType":{"id":3,"text":"xlsx"},"description":"SIR 2020–5113 Table 4","linkHelpText":"— Monitoring wells completed in the High Plains aquifer where continuous water-level data were recorded within the Bazile Groundwater Management Area, 2013–18"},{"id":380916,"rank":6,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113_table5.csv","text":"Table 5","size":"12.1 kB","linkFileType":{"id":7,"text":"csv"},"description":"SIR 2020–5113 Table 5","linkHelpText":"— Summary of selected water-quality data and groundwater age estimates from wells sampled within the Bazile Groundwater Management Area, 2000–17"},{"id":380891,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2020/5113/coverthb2.jpg"},{"id":380893,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9F3RVXN","text":"USGS data release","description":"USGS Data Release","linkHelpText":"Interpolated groundwater-level surface, spring 2017, Bazile Groundwater Management Area, northeastern Nebraska"},{"id":380918,"rank":8,"type":{"id":27,"text":"Table"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113_table6.csv","text":"Table 6","size":"8.17 kB","linkFileType":{"id":7,"text":"csv"},"description":"SIR 2020–5113 Table 6","linkHelpText":"— Pesticide concentration, nitrate concentration, and calculated apparent groundwater ages for sampled monitoring and irrigation wells with detectable concentrations of pesticides, 1995–2005"},{"id":381479,"rank":9,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2020/5113/sir20205113.pdf","text":"Report","size":"4.39 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2020–5113"},{"id":381480,"rank":10,"type":{"id":25,"text":"Version History"},"url":"https://pubs.usgs.gov/sir/2020/5113/versionHist.txt","text":"Version History","size":"585 B","linkFileType":{"id":2,"text":"txt"},"description":"SIR 2020–5113 Version History"}],"country":"United States","state":"Nebraska","otherGeospatial":"Bazile Groundwater Management Area","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -96.35009765625,\n              41.902277040963696\n            ],\n            [\n              -96.74560546875,\n              42.52069952914966\n            ],\n            [\n              -97.1630859375,\n              42.8115217450979\n            ],\n            [\n              -97.62451171875,\n              42.85985981506279\n            ],\n            [\n              -97.91015624999999,\n              42.74701217318067\n            ],\n            [\n              -98.7451171875,\n              42.98857645832184\n            ],\n            [\n              -100.08544921874999,\n              42.956422511073335\n            ],\n            [\n              -99.11865234374999,\n              42.22851735620852\n            ],\n            [\n              -98.6572265625,\n              41.88592102814744\n            ],\n            [\n              -97.470703125,\n              41.60722821271717\n            ],\n            [\n              -96.52587890625,\n              41.541477666790286\n            ],\n            [\n              -96.26220703125,\n              41.623655390686395\n            ],\n            [\n              -96.35009765625,\n              41.902277040963696\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","edition":"Version 1.0: December 10, 2020: Version 1.1: December 21, 2020","contact":"<p>Director, <a data-mce-href=\"https://www.usgs.gov/centers/ne-water\" href=\"https://www.usgs.gov/centers/ne-water\">Nebraska Water Science Center</a><br>U.S. Geological Survey<br>5231 South 19th Street<br>Lincoln, NE 68512</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Hydrologic Data Compilation and Analysis</li><li>Interpretation of Hydrogeologic Data</li><li>Potential Future Data Collection to Inform Groundwater Management</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2020-12-10","revisedDate":"2020-12-15","noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Hobza, Christopher M. 0000-0002-6239-934X cmhobza@usgs.gov","orcid":"https://orcid.org/0000-0002-6239-934X","contributorId":2393,"corporation":false,"usgs":true,"family":"Hobza","given":"Christopher","email":"cmhobza@usgs.gov","middleInitial":"M.","affiliations":[{"id":464,"text":"Nebraska Water Science Center","active":true,"usgs":true}],"preferred":true,"id":805892,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Steele, Gregory V. gvsteele@usgs.gov","contributorId":783,"corporation":false,"usgs":true,"family":"Steele","given":"Gregory","email":"gvsteele@usgs.gov","middleInitial":"V.","affiliations":[{"id":464,"text":"Nebraska Water Science Center","active":true,"usgs":true}],"preferred":true,"id":805893,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70217302,"text":"70217302 - 2020 - Feral burros and other influences on desert tortoise presence in the western Sonoran Desert","interactions":[],"lastModifiedDate":"2021-01-18T13:43:50.117396","indexId":"70217302","displayToPublicDate":"2020-12-10T07:41:04","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1892,"text":"Herpetologica","active":true,"publicationSubtype":{"id":10}},"title":"Feral burros and other influences on desert tortoise presence in the western Sonoran Desert","docAbstract":"<div class=\"div0\"><div class=\"row ArticleContentRow\"><p id=\"ID0EF\" class=\"first\">Across the globe, conflicting priorities exist in how land and resources are managed. In the American West, conflicts are common on public lands with historical mandates for multiple uses. We explored the impacts of multiple uses of land in a case study of Agassiz's Desert Tortoises (<i>Gopherus agassizii</i>), a federally threatened species, in the western Sonoran Desert. The tortoise has declined for many reasons, most of which relate to management of land and habitat. Frequently cited causes are livestock grazing, roads, vehicle-oriented recreation, predators, and disease. In spring of 2009, we conducted a survey to evaluate relationships between desert tortoises, vegetation associations, topography, predators, and anthropogenic uses. We sampled a 93-km<sup>2</sup><span>&nbsp;</span>area with 200 independent 1-ha plots. Density (± SE) of adult tortoises was low, 2.0 ± 1.0/km<sup>2</sup>, and the annualized death rate for adults during the 4 yr preceding the survey was high, 13.1%/yr. We observed tortoise sign, most of which was recent, on 22% of the 200 plots, primarily in the southwestern part of the study area. More tortoise sign occurred on plots with Brittlebush (<i>Encelia</i><span>&nbsp;</span>spp.) vegetation at higher elevations. Most plots (91.0%) had ≥1 human-related impacts: feral burro scat (<i>Equus asinus</i>; 84.0%), recent vehicle tracks and trails (34.0%), trash (28.0%), burro trails and wallows (26.5%), and old vehicle tracks (24.0%). We used a multimodel approach to model presence of tortoise sign on the basis of 12 predictor variables, and calculated model-averaged predictions for the probability of tortoise presence. Importance values revealed two apparent top drivers: feral burros and vegetation association. This is the first study to identify a negative association between presence of desert tortoises and feral burros.</p></div></div>","language":"English","publisher":"Allen Press","doi":"10.1655/Herpetologica-D-20-00023.1","usgsCitation":"Berry, K.H., Yee, J.L., and Lyren, L.L., 2020, Feral burros and other influences on desert tortoise presence in the western Sonoran Desert: Herpetologica, v. 76, no. 4, p. 403-413, https://doi.org/10.1655/Herpetologica-D-20-00023.1.","productDescription":"11 p.","startPage":"403","endPage":"413","ipdsId":"IP-060116","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":487087,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://zenodo.org/record/7712457","text":"External Repository"},{"id":382254,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arizona, California","otherGeospatial":"Sonoran Desert","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -114.89501953124999,\n              33.925129700072\n            ],\n            [\n              -114.78515624999999,\n              32.37996146435729\n            ],\n            [\n              -111.6650390625,\n              32.7872745269555\n            ],\n            [\n              -112.03857421875,\n              34.84987503195418\n            ],\n            [\n              -114.89501953124999,\n              35.06597313798418\n            ],\n            [\n              -114.89501953124999,\n              33.925129700072\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"76","issue":"4","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Berry, Kristin H. 0000-0003-1591-8394 kristin_berry@usgs.gov","orcid":"https://orcid.org/0000-0003-1591-8394","contributorId":437,"corporation":false,"usgs":true,"family":"Berry","given":"Kristin","email":"kristin_berry@usgs.gov","middleInitial":"H.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":808313,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Yee, Julie L. 0000-0003-1782-157X julie_yee@usgs.gov","orcid":"https://orcid.org/0000-0003-1782-157X","contributorId":3246,"corporation":false,"usgs":true,"family":"Yee","given":"Julie","email":"julie_yee@usgs.gov","middleInitial":"L.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":808314,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Lyren, Lisa L.","contributorId":166968,"corporation":false,"usgs":false,"family":"Lyren","given":"Lisa","email":"","middleInitial":"L.","affiliations":[{"id":24583,"text":"former USGS employee","active":true,"usgs":false}],"preferred":false,"id":808315,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70217764,"text":"70217764 - 2020 - Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity","interactions":[],"lastModifiedDate":"2021-02-03T21:09:43.237162","indexId":"70217764","displayToPublicDate":"2020-12-10T07:19:43","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3919,"text":"Conservation Physiology","onlineIssn":"2051-1434","active":true,"publicationSubtype":{"id":10}},"title":"Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity","docAbstract":"<p><span>The Sacramento splittail (</span><i>Pogonichthys macrolepidotus</i><span>) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allopatric upstream spawning habitat of the Central Valley (CV) population connects with the sympatric rearing grounds via relatively low salinity waters, whereas the San Pablo (SP) population must pass through the relatively high-salinity Upper SFE to reach its allopatric downstream spawning habitat. We hypothesize that if migration through SFE salinities to SP spawning grounds is more challenging for adult CV than SP splittail, then salinity tolerance, osmoregulatory capacity, and metabolic responses to salinity will differ between populations. Osmoregulatory disturbances, assessed by measuring plasma osmolality and ions, muscle moisture and Na</span><sup>+</sup><span>-K</span><sup>+</sup><span>-ATPase activity after 168 to 336&nbsp;h at 11‰ salinity, showed evidence for a more robust osmoregulatory capacity in adult SP relative to CV splittail. While both resting and maximum metabolic rates were elevated in SP splittail in response to increased salinity, CV splittail metabolic rates were unaffected by salinity. Further, the calculated difference between resting and maximum metabolic values, aerobic scope, did not differ significantly between populations. Therefore, improved osmoregulation came at a metabolic cost for SP splittail but was not associated with negative impacts on scope for aerobic metabolism. These results suggest that SP splittail may be physiologically adjusted to allow for migration through higher-salinity waters. The trends in interpopulation variation in osmoregulatory and metabolic responses to salinity exposures support our hypothesis of greater salinity-related challenges to adult CV than SP splittail migration and are consistent with our previous findings for juvenile splittail populations, further supporting our recommendation of population-specific management.</span></p>","language":"English","publisher":"Society for Experimental Biology","doi":"10.1093/conphys/coaa098","usgsCitation":"Verhille, C.E., Dabruzzi, T.F., Cocherell, D.E., Mahardja, B., Feyrer, F.V., Foin, T.C., Baerwald, M.R., and Fangue, N.A., 2020, Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity: Conservation Physiology, v. 8, no. 1, coaa098, 19 p., https://doi.org/10.1093/conphys/coaa098.","productDescription":"coaa098, 19 p.","ipdsId":"IP-125708","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":454684,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/conphys/coaa098","text":"Publisher Index Page"},{"id":382871,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United  States","state":"California","otherGeospatial":"San Francisco Estuary","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -123.3489990234375,\n              37.112145754751516\n            ],\n            [\n              -120.860595703125,\n              37.112145754751516\n            ],\n            [\n              -120.860595703125,\n              39.07464374293251\n            ],\n            [\n              -123.3489990234375,\n              39.07464374293251\n            ],\n            [\n              -123.3489990234375,\n              37.112145754751516\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"8","issue":"1","noUsgsAuthors":false,"publicationDate":"2020-12-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Verhille, Christine E.","contributorId":174642,"corporation":false,"usgs":false,"family":"Verhille","given":"Christine","email":"","middleInitial":"E.","affiliations":[{"id":13461,"text":"U.C. Davis","active":true,"usgs":false}],"preferred":false,"id":809577,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Dabruzzi, Theresa F.","contributorId":174643,"corporation":false,"usgs":false,"family":"Dabruzzi","given":"Theresa","email":"","middleInitial":"F.","affiliations":[{"id":13461,"text":"U.C. Davis","active":true,"usgs":false}],"preferred":false,"id":809578,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cocherell, Dennis E.","contributorId":174644,"corporation":false,"usgs":false,"family":"Cocherell","given":"Dennis","email":"","middleInitial":"E.","affiliations":[{"id":13461,"text":"U.C. Davis","active":true,"usgs":false}],"preferred":false,"id":809579,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Mahardja, Brian","contributorId":174645,"corporation":false,"usgs":false,"family":"Mahardja","given":"Brian","email":"","affiliations":[{"id":13461,"text":"U.C. Davis","active":true,"usgs":false}],"preferred":false,"id":809580,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Feyrer, Frederick V. 0000-0003-1253-2349 ffeyrer@usgs.gov","orcid":"https://orcid.org/0000-0003-1253-2349","contributorId":178379,"corporation":false,"usgs":true,"family":"Feyrer","given":"Frederick","email":"ffeyrer@usgs.gov","middleInitial":"V.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":809581,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Foin, Theodore C.","contributorId":174646,"corporation":false,"usgs":false,"family":"Foin","given":"Theodore","email":"","middleInitial":"C.","affiliations":[{"id":13461,"text":"U.C. Davis","active":true,"usgs":false}],"preferred":false,"id":809582,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Baerwald, Melinda R.","contributorId":171890,"corporation":false,"usgs":false,"family":"Baerwald","given":"Melinda","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":809583,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Fangue, Nann A.","contributorId":152479,"corporation":false,"usgs":false,"family":"Fangue","given":"Nann","email":"","middleInitial":"A.","affiliations":[{"id":7214,"text":"University of California, Davis","active":true,"usgs":false}],"preferred":false,"id":809584,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70217335,"text":"70217335 - 2020 - Tidal wetland resilience to increased rates of sea level rise in the Chesapeake Bay: Introduction to the special feature","interactions":[],"lastModifiedDate":"2021-01-18T17:16:31.373834","indexId":"70217335","displayToPublicDate":"2020-12-09T11:13:53","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3750,"text":"Wetlands","onlineIssn":"1943-6246","printIssn":"0277-5212","active":true,"publicationSubtype":{"id":10}},"title":"Tidal wetland resilience to increased rates of sea level rise in the Chesapeake Bay: Introduction to the special feature","docAbstract":"<div id=\"Abs1-section\" class=\"c-article-section\"><div id=\"Abs1-content\" class=\"c-article-section__content\"><p>The papers in this Special Feature are the result of the first Marsh Resilience Summit in the Chesapeake Bay region, which occurred in February 2019. The Chesapeake Bay region has one of the highest rates of relative sea level rise in the U.S., jeopardizing over 1000&nbsp;km<sup>2</sup><span>&nbsp;</span>of tidal wetlands along with other coastal lands. The goal of the Summit and this collection of articles is to analyze tidal wetland response to accelerating sea level rise and the effect their response will have on adaptation planning for surrounding communities. Ten Summit presenters share their research in this Special Feature. In this Introduction, we summarize their findings on evaluating restoration potential at the site-specific level, measuring and projecting marsh migration and erosions rates, describing impacts of wetland migration on a marsh dependent animal, effects on human communities, and finally the roles of property owners and government on future tidal wetland extent. These contributions demonstrate that tidal marsh distribution is dynamic in response to sea level rise, and that social, legal, and policy tools can be used and further developed to enable opportunities for restoring or conserving wetlands when stakeholders are engaged effectively. The papers here and feedback from Summit participants illuminate diverse priorities, research unknowns, and next steps for land use planning toward resilience of the Chesapeake Bay region that also can inform global communities.</p></div></div><div id=\"cobranding-and-download-availability-text\" class=\"note test-pdf-link\"><br></div>","language":"English","publisher":"Springer","doi":"10.1007/s13157-020-01391-5","usgsCitation":"Sudol, T.A., Noe, G.E., and Reed, D.J., 2020, Tidal wetland resilience to increased rates of sea level rise in the Chesapeake Bay: Introduction to the special feature: Wetlands, v. 40, no. 6, p. 1667-1671, https://doi.org/10.1007/s13157-020-01391-5.","productDescription":"5 p.","startPage":"1667","endPage":"1671","ipdsId":"IP-123922","costCenters":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"links":[{"id":467268,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://repository.library.noaa.gov/view/noaa/41883","text":"External Repository"},{"id":382280,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Maryland, Virgina","otherGeospatial":"Chesapeake Bay","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -76.1517333984375,\n              36.91915611148194\n            ],\n            [\n              -75.948486328125,\n              37.12966595484084\n            ],\n            [\n              -75.9375,\n              37.36579146999664\n            ],\n            [\n              -75.6683349609375,\n              37.84883250647402\n            ],\n            [\n              -75.618896484375,\n              37.97018468810549\n            ],\n            [\n              -75.8221435546875,\n              37.97884504049713\n            ],\n            [\n              -75.706787109375,\n              38.108627664321276\n            ],\n            [\n              -75.849609375,\n              38.46219172306828\n            ],\n            [\n              -76.1077880859375,\n              38.89530825492018\n            ],\n            [\n              -76.1846923828125,\n              39.16839998800286\n            ],\n            [\n              -75.8331298828125,\n              39.52099229357195\n            ],\n            [\n              -76.00341796875,\n              39.61838363831915\n            ],\n            [\n              -76.2835693359375,\n              39.46588451142044\n            ],\n            [\n              -76.475830078125,\n              39.32579941789298\n            ],\n            [\n              -76.629638671875,\n              39.22799807055236\n            ],\n            [\n              -76.5802001953125,\n              38.89530825492018\n            ],\n            [\n              -76.56372070312499,\n              38.53957267203905\n            ],\n            [\n              -76.5142822265625,\n              38.25112269630296\n            ],\n            [\n              -77.0306396484375,\n              38.371808917147554\n            ],\n            [\n              -77.0306396484375,\n              38.11727165830543\n            ],\n            [\n              -76.80541992187499,\n              37.42688834526727\n            ],\n            [\n              -76.5966796875,\n              36.92793899776678\n            ],\n            [\n              -76.1517333984375,\n              36.91915611148194\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"40","issue":"6","noUsgsAuthors":false,"publicationDate":"2020-12-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Sudol, Taryn A","contributorId":247805,"corporation":false,"usgs":false,"family":"Sudol","given":"Taryn","email":"","middleInitial":"A","affiliations":[{"id":49657,"text":"Maryland Sea Grant","active":true,"usgs":false}],"preferred":false,"id":808382,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Noe, Gregory E. 0000-0002-6661-2646 gnoe@usgs.gov","orcid":"https://orcid.org/0000-0002-6661-2646","contributorId":139100,"corporation":false,"usgs":true,"family":"Noe","given":"Gregory","email":"gnoe@usgs.gov","middleInitial":"E.","affiliations":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true},{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":36183,"text":"Hydro-Ecological Interactions Branch","active":true,"usgs":true}],"preferred":true,"id":808383,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Reed, Denise J","contributorId":247806,"corporation":false,"usgs":false,"family":"Reed","given":"Denise","email":"","middleInitial":"J","affiliations":[{"id":37245,"text":"University of New Orleans","active":true,"usgs":false}],"preferred":false,"id":808384,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70254949,"text":"70254949 - 2020 - What processes must we understand to forecast regional-scale population dynamics?","interactions":[],"lastModifiedDate":"2024-06-11T15:12:39.5414","indexId":"70254949","displayToPublicDate":"2020-12-09T10:08:10","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3174,"text":"Proceedings of the Royal Society B: Biological Sciences","active":true,"publicationSubtype":{"id":10}},"title":"What processes must we understand to forecast regional-scale population dynamics?","docAbstract":"<p><span>An urgent challenge facing biologists is predicting the regional-scale population dynamics of species facing environmental change. Biologists suggest that we must move beyond predictions based on phenomenological models and instead base predictions on underlying processes. For example, population biologists, evolutionary biologists, community ecologists and ecophysiologists all argue that the respective processes they study are essential. Must our models include processes from all of these fields? We argue that answering this critical question is ultimately an empirical exercise requiring a substantial amount of data that have not been integrated for any system to date. To motivate and facilitate the necessary data collection and integration, we first review the potential importance of each mechanism for skilful prediction. We then develop a conceptual framework based on reaction norms, and propose a hierarchical Bayesian statistical framework to integrate processes affecting reaction norms at different scales. The ambitious research programme we advocate is rapidly becoming feasible due to novel collaborations, datasets and analytical tools.</span></p>","language":"English","publisher":"The Royal Society Publishing","doi":"10.1098/rspb.2020.2219","usgsCitation":"Lasky, J.R., Hooten, M., and Adler, P., 2020, What processes must we understand to forecast regional-scale population dynamics?: Proceedings of the Royal Society B: Biological Sciences, v. 287, no. 1940, 20202219, 12 p., https://doi.org/10.1098/rspb.2020.2219.","productDescription":"20202219, 12 p.","ipdsId":"IP-122452","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":454688,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1098/rspb.2020.2219","text":"Publisher Index Page"},{"id":429878,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"287","issue":"1940","noUsgsAuthors":false,"publicationDate":"2020-12-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Lasky, Jesse R.","contributorId":338090,"corporation":false,"usgs":false,"family":"Lasky","given":"Jesse","email":"","middleInitial":"R.","affiliations":[{"id":24698,"text":"PSU","active":true,"usgs":false}],"preferred":false,"id":902949,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hooten, Mevin 0000-0002-1614-723X mhooten@usgs.gov","orcid":"https://orcid.org/0000-0002-1614-723X","contributorId":2958,"corporation":false,"usgs":true,"family":"Hooten","given":"Mevin","email":"mhooten@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":12963,"text":"Colorado Cooperative Fish and Wildlife Research Unit, Fort Collins, CO","active":true,"usgs":false}],"preferred":true,"id":902948,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Adler, Peter B.","contributorId":338091,"corporation":false,"usgs":false,"family":"Adler","given":"Peter B.","affiliations":[{"id":28050,"text":"USU","active":true,"usgs":false}],"preferred":false,"id":902950,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70224299,"text":"70224299 - 2020 - Analyzing vegetation change in a sagebrush ecosystem using long-term field observations and Landsat imagery in Wyoming","interactions":[],"lastModifiedDate":"2021-09-21T13:32:48.181241","indexId":"70224299","displayToPublicDate":"2020-12-09T08:29:48","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Analyzing vegetation change in a sagebrush ecosystem using long-term field observations and Landsat imagery in Wyoming","docAbstract":"<p><span>The importance of monitoring shrublands to detect and understand changes through time is increasingly recognized as critical to management. This research focuses on ecological change observed over 10&nbsp;yr of field observation at 126 plots and over 35&nbsp;yr of the Landsat archive in a shrubland ecosystem. Field data consisting of the fractional cover of shrubs, sagebrush, herbs, litter, and bare ground components were collected to be directly comparable to Landsat time-series predictions at an ecoregion level. We used these data to test three hypotheses. First, that precipitation and temperature govern changes in the proportions of shrubland components on an interannual time scale. Second, that longer-term component change is related to climate change. Finally, that change intensity varies by shrubland communities clustered by biophysical conditions. We found that the field observations and Landsat times-series predictions generally responded similarly to interannual variation in weather, chiefly driven by precipitation. Landsat times-series data provided a reasonable means of scaling up the findings of the field observations to a larger temporal and spatial window. The results of the analysis indicate that shrubland component change intensity significantly varies by biophysical clusters, and indicate a significant increase in the cover of shrubs and sagebrush in long-term monitoring plots between 2008 and 2017 and in the Landsat time-series data across the Wyoming Basin study area from 1985 to 2017 and from 2008 to 2017. Our results indicate that the Landsat time series can be used to answer critical questions regarding the influence of climate change and the suitability of management practices in shrubland ecosystems.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.3311","usgsCitation":"Shi, H., Homer, C., Rigge, M.B., Postma, K., and Xian, G.Z., 2020, Analyzing vegetation change in a sagebrush ecosystem using long-term field observations and Landsat imagery in Wyoming: Ecosphere, v. 11, no. 12, e03311, 20 p., https://doi.org/10.1002/ecs2.3311.","productDescription":"e03311, 20 p.","ipdsId":"IP-113232","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":454690,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecs2.3311","text":"Publisher Index Page"},{"id":389545,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wyoming","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -110.972900390625,\n              40.95501133048621\n            ],\n            [\n              -108.48999023437499,\n              40.95501133048621\n            ],\n            [\n              -108.48999023437499,\n              42.601619944327965\n            ],\n            [\n              -110.972900390625,\n              42.601619944327965\n            ],\n            [\n              -110.972900390625,\n              40.95501133048621\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"11","issue":"12","noUsgsAuthors":false,"publicationDate":"2020-12-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Shi, Hua 0000-0001-7013-1565 hshi@usgs.gov","orcid":"https://orcid.org/0000-0001-7013-1565","contributorId":646,"corporation":false,"usgs":true,"family":"Shi","given":"Hua","email":"hshi@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true},{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":823501,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Homer, Collin 0000-0003-4755-8135","orcid":"https://orcid.org/0000-0003-4755-8135","contributorId":238918,"corporation":false,"usgs":true,"family":"Homer","given":"Collin","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":823502,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rigge, Matthew B. 0000-0003-4471-8009 mrigge@usgs.gov","orcid":"https://orcid.org/0000-0003-4471-8009","contributorId":751,"corporation":false,"usgs":true,"family":"Rigge","given":"Matthew","email":"mrigge@usgs.gov","middleInitial":"B.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":823503,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Postma, Kory 0000-0001-8058-498X","orcid":"https://orcid.org/0000-0001-8058-498X","contributorId":265826,"corporation":false,"usgs":true,"family":"Postma","given":"Kory","email":"","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":823504,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Xian, George Z. 0000-0001-5674-2204","orcid":"https://orcid.org/0000-0001-5674-2204","contributorId":238919,"corporation":false,"usgs":true,"family":"Xian","given":"George","email":"","middleInitial":"Z.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":823505,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70216166,"text":"ds1130 - 2020 - Population estimates for selected breeding seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019","interactions":[],"lastModifiedDate":"2020-12-10T13:21:13.083251","indexId":"ds1130","displayToPublicDate":"2020-12-09T07:22:02","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":310,"text":"Data Series","code":"DS","onlineIssn":"2327-638X","printIssn":"2327-0271","active":false,"publicationSubtype":{"id":5}},"seriesNumber":"1130","displayTitle":"Population Estimates for Selected Breeding Seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019","title":"Population estimates for selected breeding seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019","docAbstract":"<p><span>Kīlauea Point National Wildlife Refuge (KPNWR) is an important seabird breeding site located at the northeastern tip of Kauaʻi in the main Hawaiian Islands. Despite the regional significance of KPNWR as one of the most important breeding sites for red-tailed tropicbirds (</span><i>Phaethon rubricauda</i><span>), red-footed boobies (</span><i>Sula sula</i><span>), and wedge-tailed shearwaters (</span><i>Ardenna pacifica</i><span>) in the main Hawaiian Islands, robust and accurate population surveys have not been consistently conducted and recent information is lacking. In this study, we completed comprehensive population surveys for these three species during the 2019 breeding season. Using direct censusing methods (ground-searching, visual and photographic counts), we determined that 387 red-tailed tropicbird and 5,049 red-footed booby breeding pairs nested at KPNWR in 2019. Additionally, we performed surveys of aerially displaying tropicbirds to estimate a potential population of 30 white-tailed tropicbird (</span><i>Phaethon lepturus</i><span>) breeding pairs at KPNWR. Using a stratified-random plot-sampling method, we estimated that 20,998 wedge-tailed shearwater pairs nested at KPNWR in 2019. The breeding population size results in this study are greater than those reported in the past for KPNWR. We suggest that the red-tailed tropicbird breeding population has increased since the mid-2000s (when population estimates were last made), whereas red-footed booby numbers likely have remained similar and 2019 results show an increase from past estimates because of the more comprehensive methods used in this study. The results of these surveys provide current and accurate population sizes for these species that can serve as (1) benchmarks for future management and monitoring at KPNWR and (2) important components of population-level assessments of seabird vulnerability to potential offshore wind energy development in the main Hawaiian Islands.</span></p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ds1130","collaboration":"Prepared in cooperation with the Bureau of Ocean Energy Management and the U.S. Fish and Wildlife Service Kauaʻi National Wildlife Refuge Complex","usgsCitation":"Felis, J.J., Kelsey, E.C., Adams, J., Stenske, J.G., and White, L.M., 2020, Population estimates for selected breeding seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019: U.S. Geological Survey Data Series 1130, 32 p., https://doi.org/​10.3133/​ds1130.","productDescription":"Report: viii, 32 p.; Data Release","onlineOnly":"Y","ipdsId":"IP-119737","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":380277,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/ds/1130/ds1130.pdf","text":"Report","size":"12.1 MB","linkFileType":{"id":1,"text":"pdf"},"description":"DS 1130"},{"id":380278,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P93MPDR1","text":"USGS data release","description":"USGS Data Release","linkHelpText":"Population estimates for selected breeding seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019"},{"id":380276,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/ds/1130/coverthb.jpg"}],"country":"United States","state":"Hawaii","otherGeospatial":"Kīlauea Point National Wildlife Refuge","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -159.40844535827637,\n              22.218873658623284\n            ],\n            [\n              -159.37668800354004,\n              22.218873658623284\n            ],\n            [\n              -159.37668800354004,\n              22.238816053514743\n            ],\n            [\n              -159.40844535827637,\n              22.238816053514743\n            ],\n            [\n              -159.40844535827637,\n              22.218873658623284\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/werc\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/werc\">Western Ecological Research Center</a><br>U.S. Geological Survey<br>3020 State University Drive East<br>Sacramento, California 95819</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Red-tailed Tropicbird and White-tailed Tropicbird</li><li>Wedge-tailed Shearwater</li><li>Red-footed Booby</li><li>Summary</li><li>References Cited</li><li>Appendix 1</li></ul>","publishedDate":"2020-12-09","noUsgsAuthors":false,"publicationDate":"2020-12-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Felis, Jonathan J. 0000-0002-0608-8950 jfelis@usgs.gov","orcid":"https://orcid.org/0000-0002-0608-8950","contributorId":4825,"corporation":false,"usgs":true,"family":"Felis","given":"Jonathan","email":"jfelis@usgs.gov","middleInitial":"J.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":804281,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kelsey, Emily C. 0000-0002-0107-3530 ekelsey@usgs.gov","orcid":"https://orcid.org/0000-0002-0107-3530","contributorId":206505,"corporation":false,"usgs":true,"family":"Kelsey","given":"Emily","email":"ekelsey@usgs.gov","middleInitial":"C.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":804282,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Adams, Josh 0000-0003-3056-925X josh_adams@usgs.gov","orcid":"https://orcid.org/0000-0003-3056-925X","contributorId":2422,"corporation":false,"usgs":true,"family":"Adams","given":"Josh","email":"josh_adams@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":804283,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stenske, Jennilyn G.","contributorId":245346,"corporation":false,"usgs":false,"family":"Stenske","given":"Jennilyn","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":804284,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"White, Laney M. 0000-0002-3830-5921 lmwhite@usgs.gov","orcid":"https://orcid.org/0000-0002-3830-5921","contributorId":245348,"corporation":false,"usgs":false,"family":"White","given":"Laney M.","email":"lmwhite@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":804285,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70217001,"text":"70217001 - 2020 - Non-analog increases to air, surface, and belowground temperature extreme events due to climate change","interactions":[],"lastModifiedDate":"2021-01-19T16:05:23.116846","indexId":"70217001","displayToPublicDate":"2020-12-09T06:41:01","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1246,"text":"Climate Change","onlineIssn":"1573-1480","printIssn":"0165-0009","active":true,"publicationSubtype":{"id":10}},"title":"Non-analog increases to air, surface, and belowground temperature extreme events due to climate change","docAbstract":"<p><span>Air temperatures (Ta) are rising in a changing climate, increasing extreme temperature events. Examining how Ta increases are influencing extreme temperatures at the soil surface and belowground in the soil profile can refine our understanding of the ecological consequences of rising temperatures. In this paper, we validate surface and soil temperature (Ts: 0–100-cm depth) simulations in the SOILWAT2 model for 29 locations comprising 5 ecosystem types in the central and western USA. We determine the temperature characteristics of these locations from 1980 to 2015, and explore simulations of Ta and Ts change over 2030–2065 and 2065–2100 time periods using General Circulation Model (GCM) projections and the RCP 8.5 emissions scenario. We define temperature extremes using a nonstationary peak over threshold method, quantified from standard deviations above the mean (0-</span><i>σ</i><span>: an event&nbsp;</span><span class=\"mathjax-tex\"><span id=\"MathJax-Element-1-Frame\" class=\"MathJax\" data-mathml=\"<math xmlns=&quot;http://www.w3.org/1998/Math/MathML&quot;><mo>&amp;gt;&amp;#x223C;</mo></math>\"><span id=\"MathJax-Span-1\" class=\"math\"><span><span id=\"MathJax-Span-2\" class=\"mrow\"><span id=\"MathJax-Span-3\" class=\"mo\">&gt;∼</span></span></span></span><span class=\"MJX_Assistive_MathML\">&gt;∼</span></span></span><span>&nbsp;51% of extreme events; 2-</span><span class=\"mathjax-tex\"><span id=\"MathJax-Element-2-Frame\" class=\"MathJax\" data-mathml=\"<math xmlns=&quot;http://www.w3.org/1998/Math/MathML&quot;><mi>&amp;#x03C3;</mi><mo>:&amp;gt;&amp;#x223C;</mo><mn>98</mn><mi mathvariant=&quot;normal&quot;>&amp;#x0025;</mi></math>\"><span id=\"MathJax-Span-4\" class=\"math\"><span><span id=\"MathJax-Span-5\" class=\"mrow\"><span id=\"MathJax-Span-6\" class=\"mi\">σ</span><span id=\"MathJax-Span-7\" class=\"mo\">:&gt;∼</span><span id=\"MathJax-Span-8\" class=\"mn\">98</span><span id=\"MathJax-Span-9\" class=\"mi\">%</span></span></span></span><span class=\"MJX_Assistive_MathML\">σ:&gt;∼98%</span></span></span><span>). Our primary objective is to contrast the magnitude (</span><sup>∘</sup><span>C) and frequency of occurrence of extreme temperature events between the twentieth and twenty-first century. We project that temperatures will increase substantially in the twenty-first century. Extreme Ta events will experience the largest increases by magnitude, and extreme Ts events will experience the largest increases by proportion. On average, 2-</span><i>σ</i><span>&nbsp;extreme Ts events will increase by 3.4&nbsp;</span><sup>∘</sup><span>C in 2030–2065 and by 5.3&nbsp;</span><sup>∘</sup><span>C in 2065–2100. Increases in extreme Ts events will often exceed + 10&nbsp;</span><sup>∘</sup><span>C at 0–20 cm by 2065–2100, and at 0–100 cm will often exceed 5.0 standard deviations above 1980–2015 values. 2-</span><i>σ</i><span>&nbsp;extreme Ts events will increase from 0.9 events per decade in 1980–2015 to 23 events in 2030–2065 and 38 events in 2065–2100. By 2065–2100, the majority of months will experience extreme events that co-occur at 0–100 cm, which did not occur in 1980–2015. These projections illustrate the non-analog temperature increases that ecosystems will experience in the twenty-first century as a result of climate change.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s10584-020-02944-7","usgsCitation":"Petrie, M., Bradford, J., Lauenroth, W., Schlaepfer, D., Andrews, C.M., and Bell, D., 2020, Non-analog increases to air, surface, and belowground temperature extreme events due to climate change: Climate Change, v. 163, p. 2233-2256, https://doi.org/10.1007/s10584-020-02944-7.","productDescription":"24 p.","startPage":"2233","endPage":"2256","ipdsId":"IP-124234","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":381606,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"163","noUsgsAuthors":false,"publicationDate":"2020-12-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Petrie, M.D.","contributorId":192983,"corporation":false,"usgs":false,"family":"Petrie","given":"M.D.","email":"","affiliations":[],"preferred":false,"id":807209,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bradford, John B. 0000-0001-9257-6303","orcid":"https://orcid.org/0000-0001-9257-6303","contributorId":219257,"corporation":false,"usgs":true,"family":"Bradford","given":"John B.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":807210,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Lauenroth, W.K.","contributorId":192984,"corporation":false,"usgs":false,"family":"Lauenroth","given":"W.K.","email":"","affiliations":[],"preferred":false,"id":807211,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Schlaepfer, D.R.","contributorId":140421,"corporation":false,"usgs":false,"family":"Schlaepfer","given":"D.R.","email":"","affiliations":[{"id":13488,"text":"Dept. of Botany, University of Wyoming, 1000 E. UNIVersity Avenue, Laramie, WY 82070","active":true,"usgs":false}],"preferred":false,"id":807212,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Andrews, Caitlin M. 0000-0003-4593-1071 candrews@usgs.gov","orcid":"https://orcid.org/0000-0003-4593-1071","contributorId":192985,"corporation":false,"usgs":true,"family":"Andrews","given":"Caitlin","email":"candrews@usgs.gov","middleInitial":"M.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":807213,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Bell, D.M.","contributorId":245867,"corporation":false,"usgs":false,"family":"Bell","given":"D.M.","email":"","affiliations":[{"id":49349,"text":"Pacific Northwest Research  Station, USDA Forest  Service, Corvallis OR","active":true,"usgs":false}],"preferred":false,"id":807214,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70216798,"text":"fs20203054 - 2020 - Water resources of Pointe Coupee Parish, Louisiana","interactions":[],"lastModifiedDate":"2020-12-09T12:41:43.34528","indexId":"fs20203054","displayToPublicDate":"2020-12-08T15:44:38","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-3054","displayTitle":"Water Resources of Pointe Coupee Parish, Louisiana","title":"Water resources of Pointe Coupee Parish, Louisiana","docAbstract":"<p>Information concerning the availability, use, and quality of water in Pointe Coupee Parish, Louisiana, is critical for proper water-supply management. The purpose of this fact sheet is to present information that can be used by water managers, parish residents, and others for stewardship of this vital resource. In 2014, 364 million gallons per day (Mgal/d) of water were withdrawn in Pointe Coupee Parish, including about 39.87 Mgal/d from groundwater sources and 323.72 Mgal/d from surface-water sources. Withdrawals for power generation accounted for 89 percent (323.98 Mgal/d) of the total water withdrawn. Withdrawals for agricultural use, composed of aquaculture, general irrigation, livestock, and rice irrigation, accounted for 8 percent (29.29 Mgal/d) of the total water withdrawn. Other categories of use included public supply, industrial, and rural domestic. Water-use data collected at 5-year intervals from 1960 to 2010 and again in 2014 indicated that water withdrawals peaked in 2014. The large increase in surface-water withdrawals from 1980 to 1985 is attributable to an increase of 262 Mgal/d for power-generation use.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20203054","usgsCitation":"White, V.E., 2020, Water resources of Pointe Coupee Parish, Louisiana: U.S. Geological Survey Fact Sheet 2020–3054, 6 p., https://doi.org/10.3133/fs20203054.","productDescription":"Report: 6 p.; Data Release","numberOfPages":"6","onlineOnly":"N","ipdsId":"IP-102167","costCenters":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true}],"links":[{"id":381092,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/fs/2020/3054/coverthb.jpg"},{"id":381093,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/fs/2020/3054/fs20203054.pdf","text":"Report","size":"2.73 MB","linkFileType":{"id":1,"text":"pdf"},"description":"FS 2020–3054"},{"id":381094,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F78051VM","text":"USGS data release","description":"USGS Data Release","linkHelpText":"Water withdrawals by source and category in Louisiana Parishes, 2014–2015"}],"country":"United States","state":"Louisiana","county":"Pointe Coupee Parish","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"Polygon\",\"coordinates\":[[[-91.7504,31.0193],[-91.736,31.0153],[-91.7248,31.0084],[-91.7141,31.0066],[-91.7093,31.0098],[-91.7061,31.0167],[-91.7045,31.0176],[-91.6992,31.0199],[-91.6938,31.0203],[-91.6869,31.0176],[-91.6709,31.0108],[-91.6639,31.0035],[-91.6612,30.9967],[-91.6586,30.9944],[-91.6586,30.9916],[-91.6618,30.987],[-91.6634,30.9848],[-91.6639,30.977],[-91.6622,30.9706],[-91.6574,30.9514],[-91.6451,30.9291],[-91.6525,30.9185],[-91.661,30.8952],[-91.662,30.86],[-91.6594,30.8541],[-91.6529,30.8482],[-91.6375,30.8418],[-91.6252,30.8404],[-91.5997,30.8469],[-91.588,30.8478],[-91.5768,30.846],[-91.5709,30.8423],[-91.5667,30.8364],[-91.5624,30.8373],[-91.5592,30.84],[-91.5566,30.8487],[-91.5592,30.872],[-91.5624,30.8816],[-91.5662,30.8866],[-91.5742,30.893],[-91.5859,30.8962],[-91.6046,30.8971],[-91.6131,30.9003],[-91.6163,30.9122],[-91.6099,30.9168],[-91.5859,30.9168],[-91.5689,30.9191],[-91.5497,30.9168],[-91.5321,30.904],[-91.5214,30.8903],[-91.5156,30.8752],[-91.5156,30.8615],[-91.5219,30.8483],[-91.5273,30.8103],[-91.54,30.7912],[-91.5512,30.7806],[-91.564,30.7765],[-91.5805,30.7747],[-91.5906,30.7692],[-91.5948,30.7637],[-91.5964,30.7578],[-91.5937,30.7491],[-91.5719,30.7354],[-91.5533,30.7308],[-91.5384,30.7331],[-91.523,30.7381],[-91.5001,30.7413],[-91.4804,30.7409],[-91.4602,30.7354],[-91.4507,30.7363],[-91.4288,30.7432],[-91.398,30.7578],[-91.381,30.7591],[-91.3756,30.7559],[-91.3624,30.7394],[-91.3528,30.7225],[-91.3418,30.6727],[-91.3354,30.6603],[-91.3312,30.6585],[-91.3338,30.6539],[-91.312,30.6484],[-91.3174,30.637],[-91.3201,30.6329],[-91.3355,30.616],[-91.3498,30.6041],[-91.3631,30.59],[-91.3653,30.5877],[-91.3653,30.5845],[-91.3653,30.579],[-91.3648,30.5689],[-91.3945,30.569],[-91.3977,30.569],[-91.3993,30.569],[-91.4009,30.5621],[-91.4056,30.5557],[-91.4078,30.5406],[-91.4147,30.5406],[-91.4147,30.5255],[-91.4152,30.5191],[-91.4147,30.5118],[-91.4821,30.5114],[-91.4815,30.4972],[-91.4853,30.4972],[-91.5261,30.4972],[-91.5584,30.4885],[-91.5568,30.483],[-91.5701,30.4826],[-91.5818,30.4825],[-91.5839,30.4967],[-91.6253,30.4972],[-91.7011,30.4975],[-91.7568,30.4978],[-91.7525,30.5079],[-91.7472,30.5093],[-91.7361,30.5084],[-91.7324,30.5102],[-91.7319,30.5125],[-91.733,30.5203],[-91.7425,30.5317],[-91.7559,30.5596],[-91.7575,30.5628],[-91.757,30.5687],[-91.7549,30.5742],[-91.7544,30.5861],[-91.7512,30.5994],[-91.755,30.6126],[-91.7539,30.6176],[-91.7508,30.6231],[-91.7449,30.6254],[-91.7412,30.6327],[-91.7444,30.6401],[-91.7466,30.6588],[-91.7445,30.6625],[-91.7328,30.668],[-91.7323,30.6725],[-91.7366,30.6794],[-91.7335,30.7018],[-91.7372,30.7118],[-91.7468,30.7237],[-91.7485,30.7301],[-91.7581,30.7415],[-91.7576,30.7493],[-91.7554,30.7534],[-91.7565,30.7607],[-91.7613,30.7675],[-91.7688,30.7858],[-91.7779,30.794],[-91.787,30.7976],[-91.7987,30.8104],[-91.8067,30.8104],[-91.8089,30.8145],[-91.8078,30.8204],[-91.8041,30.8291],[-91.7977,30.8337],[-91.7978,30.8442],[-91.8154,30.8483],[-91.8202,30.8533],[-91.8202,30.8583],[-91.816,30.8634],[-91.8101,30.862],[-91.8048,30.8639],[-91.8021,30.8721],[-91.8033,30.8835],[-91.8012,30.8968],[-91.8023,30.9132],[-91.8002,30.926],[-91.8035,30.9402],[-91.8025,30.9543],[-91.8063,30.9699],[-91.8057,30.9744],[-91.8041,30.9781],[-91.7978,30.9827],[-91.7807,30.9868],[-91.777,30.9909],[-91.7754,31.0005],[-91.7728,31.0051],[-91.768,31.0092],[-91.7563,31.0143],[-91.7504,31.0193]]]},\"properties\":{\"name\":\"Pointe Coupee\",\"state\":\"LA\"}}]}","contact":"<p>Director, <a data-mce-href=\"https://www.usgs.gov/centers/lmg-water/\" href=\"https://www.usgs.gov/centers/lmg-water/\">Lower Mississippi-Gulf Water Science Center</a><br>U.S. Geological Survey<br>3535 S. Sherwood Forest Blvd., Suite 120 <br>Baton Rouge, LA 70816<br> </p>","tableOfContents":"<ul><li>Introduction</li><li>Groundwater Resources</li><li>Surface-Water Resources</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"publishedDate":"2020-12-08","noUsgsAuthors":false,"publicationDate":"2020-12-08","publicationStatus":"PW","contributors":{"authors":[{"text":"White, Vincent E. 0000-0002-1660-0102 vwhite@usgs.gov","orcid":"https://orcid.org/0000-0002-1660-0102","contributorId":5388,"corporation":false,"usgs":true,"family":"White","given":"Vincent","email":"vwhite@usgs.gov","middleInitial":"E.","affiliations":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true},{"id":369,"text":"Louisiana Water Science Center","active":true,"usgs":true}],"preferred":true,"id":806317,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70216846,"text":"70216846 - 2020 - Occupancy and detectability of northern long-eared bats in the Lake States Region","interactions":[],"lastModifiedDate":"2021-01-19T16:22:38.024409","indexId":"70216846","displayToPublicDate":"2020-12-08T12:33:09","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3779,"text":"Wildlife Society Bulletin","onlineIssn":"1938-5463","printIssn":"0091-7648","active":true,"publicationSubtype":{"id":10}},"title":"Occupancy and detectability of northern long-eared bats in the Lake States Region","docAbstract":"<p><span>The northern long‐eared bat (</span><i>Myotis septentrionalis</i><span>) is one of the bat species most affected by white‐nose syndrome. Population declines attributed to white‐nose syndrome contributed to the species’ listing as federally threatened under the 1973 Endangered Species Act. Although one of the most abundant Myotine bats in eastern North America prior to white‐nose syndrome, little is known about northern long‐eared bats in the upper Midwest, USA. We assessed the habitat associations of the northern long‐eared bats on a regional scale using occupancy models that accounted for uncertainty in nightly detection to provide needed information on the distribution as white‐nose syndrome has recently arrived in this area. We monitored bat activity using zero‐crossing frequency‐division bat detectors for 10–15 nights at 20 detector sites at each of 3 sampling areas in Michigan, USA, and 6 sampling areas in Wisconsin, USA, stratified by mesic and xeric habitat types. We constructed northern long‐eared bat nightly detection histories for our occupancy analysis using maximum likelihood estimates from 2 commercially‐available automated identification programs: Kaleidoscope and Echoclass. We sampled for a total of 2,174 detector‐nights. Both Kaleidoscope and Echoclass identified northern long‐eared bat passes on 110 detector‐nights, whereas on 1,968 detector‐nights neither program identified a northern long‐eared bat call. Only one program or the other identified northern long‐eared bat calls on 206 detector‐nights, indicating an overall agreement rate of 35% on nights when calls were detected. We analyzed these data using an occupancy analysis accounting for the potential for false positives to assess the relationship between northern long‐eared bat presence and habitat characteristics. Our analyses indicated that the probability of a false positive at a site was low (0.015; 95% CI 0.009–0.021), and detection probability, but not occupancy, declined from 2015 to 2016 for sites in Wisconsin sampled in both years. Occupancy was positively associated with distance into the forest interior (distance from nearest road).</span></p>","language":"English","publisher":"The Wildlife Society","doi":"10.1002/wsb.1138","usgsCitation":"Hyzy, B.A., Russell, R., Silvis, A., Ford, W., Riddle, J.D., and Russell, K.R., 2020, Occupancy and detectability of northern long-eared bats in the Lake States Region: Wildlife Society Bulletin, v. 44, no. 4, p. 732-740, https://doi.org/10.1002/wsb.1138.","productDescription":"9 p.","startPage":"732","endPage":"740","ipdsId":"IP-095702","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":381445,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Michigan, Wisconsin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -90.52734374999999,\n              42.53689200787315\n            ],\n            [\n              -87.802734375,\n              42.601619944327965\n            ],\n            [\n              -87.6708984375,\n              44.574817404670306\n            ],\n            [\n              -87.802734375,\n              45.042478050891546\n            ],\n            [\n              -87.03369140625,\n              45.73685954736049\n            ],\n            [\n              -85.4736328125,\n              46.07323062540835\n            ],\n            [\n              -85.869140625,\n              46.649436163350245\n            ],\n            [\n              -86.7041015625,\n              46.45299704748289\n            ],\n            [\n              -88.00048828124999,\n              46.9502622421856\n            ],\n            [\n              -88.9453125,\n              46.965259400349275\n            ],\n            [\n              -90.37353515625,\n              46.63435070293566\n            ],\n            [\n              -90.98876953125,\n              46.63435070293566\n            ],\n            [\n              -90.76904296874999,\n              46.9052455464292\n            ],\n            [\n              -91.97753906249999,\n              46.7248003746672\n            ],\n            [\n              -92.28515625,\n              45.321254361171476\n            ],\n            [\n              -91.0546875,\n              44.071800467511565\n            ],\n            [\n              -90.52734374999999,\n              42.53689200787315\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"44","issue":"4","noUsgsAuthors":false,"publicationDate":"2020-12-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Hyzy, Brenna A.","contributorId":171457,"corporation":false,"usgs":false,"family":"Hyzy","given":"Brenna","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":806603,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Russell, Robin E. 0000-0001-8726-7303","orcid":"https://orcid.org/0000-0001-8726-7303","contributorId":219536,"corporation":false,"usgs":true,"family":"Russell","given":"Robin E.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":806604,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Silvis, Alexander","contributorId":171585,"corporation":false,"usgs":false,"family":"Silvis","given":"Alexander","email":"","affiliations":[{"id":26923,"text":"Virginia Polytechnic Institute, Blacksburg, VA","active":true,"usgs":false}],"preferred":false,"id":806605,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ford, W. Mark 0000-0002-9611-594X wford@usgs.gov","orcid":"https://orcid.org/0000-0002-9611-594X","contributorId":172499,"corporation":false,"usgs":true,"family":"Ford","given":"W. Mark","email":"wford@usgs.gov","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true},{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":false,"id":806606,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Riddle, Jason D.","contributorId":146462,"corporation":false,"usgs":false,"family":"Riddle","given":"Jason","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":806607,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Russell, Kevin R.","contributorId":150351,"corporation":false,"usgs":false,"family":"Russell","given":"Kevin","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":806609,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70221756,"text":"70221756 - 2020 - Development of a standard database of reference sites for validating global burned area products","interactions":[],"lastModifiedDate":"2021-07-01T12:30:08.258764","indexId":"70221756","displayToPublicDate":"2020-12-08T07:28:07","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":8948,"text":"Earth System Science Data journal","active":true,"publicationSubtype":{"id":10}},"title":"Development of a standard database of reference sites for validating global burned area products","docAbstract":"<p>Over the past 2&nbsp;decades, several global burned area products have been produced and released to the public. However, the accuracy assessment of such products largely depends on the availability of reliable reference data that currently do not exist on a global scale or whose production require a high level of dedication of project resources. The important lack of reference data for the validation of burned area products is addressed in this paper. We provide the Burned Area Reference Database (BARD), the first publicly available database created by compiling existing reference BA (burned area) datasets from different international projects. BARD contains a total of 2661 reference files derived from Landsat and Sentinel-2 imagery. All those files have been checked for internal quality and are freely provided by the authors. To ensure database consistency, all files were transformed to a common format and were properly documented by following metadata standards. The goal of generating this database was to give BA algorithm developers and product testers reference information that would help them to develop or validate new BA products. BARD is freely available at https://doi.org/10.21950/BBQQU7 (Franquesa et al., 2020).</p>","language":"English","publisher":"Copernicus Publications","doi":"10.5194/essd-12-3229-2020","usgsCitation":"Franquesa, M., Vanderhoof, M.K., Stavrakoudis, D., Gitas, I., Roteta, E., Padilla, M., and Chuvieco, E., 2020, Development of a standard database of reference sites for validating global burned area products: Earth System Science Data journal, v. 12, no. 4, p. 3229-3246, https://doi.org/10.5194/essd-12-3229-2020.","productDescription":"18 p.","startPage":"3229","endPage":"3246","ipdsId":"IP-116811","costCenters":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"links":[{"id":454694,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.5194/essd-12-3229-2020","text":"Publisher Index Page"},{"id":386917,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"12","issue":"4","noUsgsAuthors":false,"publicationDate":"2020-12-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Franquesa, Magi","contributorId":260737,"corporation":false,"usgs":false,"family":"Franquesa","given":"Magi","email":"","affiliations":[{"id":52663,"text":"Universidad de Alcalá","active":true,"usgs":false}],"preferred":false,"id":818628,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Vanderhoof, Melanie K. 0000-0002-0101-5533 mvanderhoof@usgs.gov","orcid":"https://orcid.org/0000-0002-0101-5533","contributorId":168395,"corporation":false,"usgs":true,"family":"Vanderhoof","given":"Melanie","email":"mvanderhoof@usgs.gov","middleInitial":"K.","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true},{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":true,"id":818629,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stavrakoudis, Dimitris","contributorId":260738,"corporation":false,"usgs":false,"family":"Stavrakoudis","given":"Dimitris","email":"","affiliations":[{"id":52665,"text":"Aristotle University of Thessaloniki","active":true,"usgs":false}],"preferred":false,"id":818630,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Gitas, Ioannis","contributorId":260739,"corporation":false,"usgs":false,"family":"Gitas","given":"Ioannis","email":"","affiliations":[{"id":52665,"text":"Aristotle University of Thessaloniki","active":true,"usgs":false}],"preferred":false,"id":818631,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Roteta, Ekhi","contributorId":260740,"corporation":false,"usgs":false,"family":"Roteta","given":"Ekhi","email":"","affiliations":[{"id":52667,"text":"University of the Basque Country","active":true,"usgs":false}],"preferred":false,"id":818632,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Padilla, Marc","contributorId":213986,"corporation":false,"usgs":false,"family":"Padilla","given":"Marc","email":"","affiliations":[{"id":38955,"text":"Centre for Landscape & Climate Research, Leicester Institute for Space and Earth Observation, School of Geography, University of Leicester, Leicester LE1 7RH, United Kingdom","active":true,"usgs":false}],"preferred":false,"id":818633,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Chuvieco, Emilio","contributorId":213978,"corporation":false,"usgs":false,"family":"Chuvieco","given":"Emilio","email":"","affiliations":[{"id":38949,"text":"Environmental Remote Sensing Research Group, Department of Geology, Geography and the Environment, Universidad de Alcalá. Calle Colegios 2, Alcalá de Henares, 28801, Spain","active":true,"usgs":false}],"preferred":false,"id":818634,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70216763,"text":"ofr20201127 - 2020 - Investigation of U.S. Foreign Reliance on Critical Minerals—U.S. Geological Survey technical input document in response to Executive Order No. 13953 Signed September 30, 2020","interactions":[],"lastModifiedDate":"2020-12-08T13:26:09.759958","indexId":"ofr20201127","displayToPublicDate":"2020-12-07T14:58:00","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-1127","displayTitle":"Investigation of U.S. Foreign Reliance on Critical Minerals—U.S. Geological Survey Technical Input Document in Response to Executive Order No. 13953 Signed September 30, 2020","title":"Investigation of U.S. Foreign Reliance on Critical Minerals—U.S. Geological Survey technical input document in response to Executive Order No. 13953 Signed September 30, 2020","docAbstract":"<p>Over the past few decades (1990–2019), the United States has become reliant on foreign sources to meet domestic demand for a large and growing number of mineral commodities. In combination with recent trends towards progressively concentrated supply of mineral commodities from a limited number of countries, this heightened import reliance may increase the risk to the United States economy and national security. Several factors obscure the true net import reliance of mineral commodities essential to the United States, including indirect trade reliance, embedded trade reliance, and foreign ownership. This report provides a detailed overview of contributions to and trends of these mineral commodity supply risks and provides an outline of the salient factors pertaining to each mineral commodity’s supply chain. It also describes some additional considerations and provides a general framework for evaluating different strategies aimed at reducing net import reliance and supply risk.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20201127","usgsCitation":"Nassar, N.T., Alonso, E., and Brainard, J.L., 2020, Investigation of U.S. Foreign Reliance on Critical Minerals—U.S. Geological Survey Technical Input Document in Response to Executive Order No. 13953 Signed September 30, 2020 (Ver. 1.1, December 7, 2020): U.S. Geological Survey Open-File Report 2020–1127, 37 p., https://doi.org/10.3133/ofr20201127.","productDescription":"vii, 37 p.","numberOfPages":"37","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-123693","costCenters":[{"id":432,"text":"National Minerals Information Center","active":true,"usgs":true}],"links":[{"id":381043,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2020/1127/ofr20201127.pdf","text":"Report","size":"4.71 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2020-1127"},{"id":381064,"rank":3,"type":{"id":25,"text":"Version History"},"url":"https://pubs.usgs.gov/of/2020/1127/versionHist.txt","size":"1.4 KB","linkFileType":{"id":2,"text":"txt"}},{"id":381023,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2020/1127/coverthb3.jpg"}],"edition":"Version 1.0: December 4, 2020; Version 1.1: December 7, 2020","contact":"<p><a href=\"https://www.usgs.gov/centers/nmic\" data-mce-href=\"https://www.usgs.gov/centers/nmic\">National Minerals Information Center</a><br>U.S. Geological Survey<br>988 National Center<br>12201 Sunrise Valley Drive<br>Reston, VA 20191</p><p><a href=\"../contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Statement of Issue</li><li>Introduction</li><li>U.S. Mineral Commodity Net Import Reliance</li><li>Additional Risk Considerations</li><li>Strategies for Reducing Net Import Reliance</li><li>Mineral Commodity Overview</li><li>Mineral Commodity Overview</li><li>References Cited</li><li>Appendix 1. Mineral Commodity Narratives</li></ul>","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"publishedDate":"2020-12-04","revisedDate":"2020-12-07","noUsgsAuthors":false,"publicationDate":"2020-12-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Nassar, Nedal T. 0000-0001-8758-9732 nnassar@usgs.gov","orcid":"https://orcid.org/0000-0001-8758-9732","contributorId":197864,"corporation":false,"usgs":true,"family":"Nassar","given":"Nedal","email":"nnassar@usgs.gov","middleInitial":"T.","affiliations":[{"id":432,"text":"National Minerals Information Center","active":true,"usgs":true}],"preferred":true,"id":806124,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Alonso, Elisa 0000-0002-0090-8284","orcid":"https://orcid.org/0000-0002-0090-8284","contributorId":223015,"corporation":false,"usgs":true,"family":"Alonso","given":"Elisa","email":"","affiliations":[{"id":432,"text":"National Minerals Information Center","active":true,"usgs":true}],"preferred":true,"id":806125,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Brainard, Jamie L. 0000-0002-1712-0821","orcid":"https://orcid.org/0000-0002-1712-0821","contributorId":201465,"corporation":false,"usgs":true,"family":"Brainard","given":"Jamie","middleInitial":"L.","affiliations":[{"id":432,"text":"National Minerals Information Center","active":true,"usgs":true}],"preferred":true,"id":806126,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70216537,"text":"70216537 - 2020 - Evidence of an extreme weather‐induced phenological mismatch and a local extirpation of the endangered Karner blue butterfly","interactions":[],"lastModifiedDate":"2020-11-25T17:06:37.941448","indexId":"70216537","displayToPublicDate":"2020-12-07T11:01:02","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5803,"text":"Conservation Science and Practice","active":true,"publicationSubtype":{"id":10}},"title":"Evidence of an extreme weather‐induced phenological mismatch and a local extirpation of the endangered Karner blue butterfly","docAbstract":"<p><span>In 2011, an experiment was undertaken to examine spring synchrony between the endangered Karner blue butterfly (</span><i>Lycaeides melissa samuelis</i><span>) (Kbb) and its obligate host plant, wild blue lupine (</span><i>Lupinus perennis</i><span>) at Indiana Dunes National Lakeshore (INDU), where the southernmost population of Kbb occurred at the time of this study. From 2012 to 2014, field‐placed Kbb eggs were observed for larvae hatching in conjunction with observations of lupine emergence in oak savanna habitat. In 2012, 61% of Kbb hatched when &lt;5% of lupine had emerged due to an extreme early spring event as compared to subsequent years where temporal overlap was &gt;15% between Kbb and lupine. Laboratory experiments testing the sensitivity of Kbb hatching to warm temperatures during the winter of 2011–2012 confirmed that Kbb eggs were susceptible to temperature‐induced hatching. In the summer of 2012, second generation Kbb larvae feeding on sun‐exposed lupine had higher mortality due to the heat and drought conditions that resulted in earlier plant senescence. Following 2012, Kbb were no longer observed at INDU. This observation illustrates the pressing need for adaptive management strategies that account for extreme weather events brought on by climate change.</span></p>","language":"English","publisher":"Society for Conservation Biology","doi":"10.1111/csp2.147","usgsCitation":"Patterson, T., Grundel, R., Dzurisin, J., Knutson, R.L., and Hellmann, J., 2020, Evidence of an extreme weather‐induced phenological mismatch and a local extirpation of the endangered Karner blue butterfly: Conservation Science and Practice, v. 2, e147, 13 p., https://doi.org/10.1111/csp2.147.","productDescription":"e147, 13 p.","ipdsId":"IP-105784","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"links":[{"id":454696,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/csp2.147","text":"Publisher Index Page"},{"id":380790,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Indiana","otherGeospatial":"Indiana Dunes","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -86.99249267578125,\n              41.65136676586814\n            ],\n            [\n              -86.90597534179688,\n              41.69547509615208\n            ],\n            [\n              -86.91970825195312,\n              41.71700538790365\n            ],\n            [\n              -87.12432861328125,\n              41.65239288426814\n            ],\n            [\n              -87.12432861328125,\n              41.61030862727467\n            ],\n            [\n              -87.01309204101562,\n              41.638025739250786\n            ],\n            [\n              -86.99249267578125,\n              41.65136676586814\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"2","noUsgsAuthors":false,"publicationDate":"2019-12-07","publicationStatus":"PW","contributors":{"authors":[{"text":"Patterson, Tamatha 0000-0002-1648-8114 tpatterson@usgs.gov","orcid":"https://orcid.org/0000-0002-1648-8114","contributorId":201149,"corporation":false,"usgs":true,"family":"Patterson","given":"Tamatha","email":"tpatterson@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":805552,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Grundel, Ralph 0000-0002-2949-7087 rgrundel@usgs.gov","orcid":"https://orcid.org/0000-0002-2949-7087","contributorId":2444,"corporation":false,"usgs":true,"family":"Grundel","given":"Ralph","email":"rgrundel@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":805670,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dzurisin, Jason D. K.","contributorId":151006,"corporation":false,"usgs":false,"family":"Dzurisin","given":"Jason D. K.","affiliations":[{"id":16905,"text":"University of Notre Dame, Dept. of Biological Sciences, Notre Dame, IN, 46556, USA","active":true,"usgs":false}],"preferred":false,"id":805671,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Knutson, Randy L.","contributorId":72752,"corporation":false,"usgs":true,"family":"Knutson","given":"Randy","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":805672,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hellmann, Jessica","contributorId":197645,"corporation":false,"usgs":false,"family":"Hellmann","given":"Jessica","affiliations":[],"preferred":false,"id":805673,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70219105,"text":"70219105 - 2020 - The elephant in the lab (and field): Contamination in aquatic environmental DNA studies","interactions":[],"lastModifiedDate":"2021-03-24T12:18:35.139333","indexId":"70219105","displayToPublicDate":"2020-12-07T07:15:41","publicationYear":"2020","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3910,"text":"Frontiers in Ecology and Evolution","onlineIssn":"2296-701X","active":true,"publicationSubtype":{"id":10}},"title":"The elephant in the lab (and field): Contamination in aquatic environmental DNA studies","docAbstract":"<p><span>The rapid evolution of environmental (e)DNA methods has resulted in knowledge gaps in smaller, yet critical details like proper use of negative controls to detect contamination. Detecting contamination is vital for confident use of eDNA results in decision-making. We conducted two literature reviews to summarize (a) the types of quality assurance measures taken to detect contamination of eDNA samples from aquatic environments, (b) the occurrence, frequency and attribution (i.e., putative sources) of unexpected amplification in these quality assurance samples, and (c) how results were interpreted when contamination occurred. In the first literature review, we reviewed 156 papers and found that 91% of targeted and 73% of metabarcoding eDNA studies reported inclusion of negative controls within their workflows. However, a large percentage of targeted (49%) and metabarcoding (80%) studies only reported negative controls for laboratory procedures, so results were potentially blind to field contamination. Many of the 156 studies did not provide critical methodological information and amplification results of negative controls. In our second literature review, we reviewed 695 papers and found that 30 targeted and 32 metabarcoding eDNA studies reported amplification of negative controls. This amplification occurred at similar proportions for field and lab workflow steps in targeted and metabarcoding studies. These studies most frequently used amplified negative controls to delimit a detection threshold above which is considered significant or provided rationale for why the unexpected amplifications did not affect results. In summary, we found that there has been minimal convergence over time on negative control implementation, methods, and interpretation, which suggests that increased rigor in these smaller, yet critical details remains an outstanding need. We conclude our review by highlighting several studies that have developed especially effective quality assurance, control and mitigation methods.</span></p>","language":"English","publisher":"Frontiers","doi":"10.3389/fevo.2020.609973","usgsCitation":"Sepulveda, A., Hutchins, P.R., Forstchen, M., Mckeefry, M., and Swigris, A.M., 2020, The elephant in the lab (and field): Contamination in aquatic environmental DNA studies: Frontiers in Ecology and Evolution, v. 8, 12 p., https://doi.org/10.3389/fevo.2020.609973.","productDescription":"12 p.","ipdsId":"IP-122976","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":454698,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3389/fevo.2020.609973","text":"Publisher Index Page"},{"id":384627,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"8","noUsgsAuthors":false,"publicationDate":"2020-12-07","publicationStatus":"PW","contributors":{"authors":[{"text":"Sepulveda, Adam 0000-0001-7621-7028 asepulveda@usgs.gov","orcid":"https://orcid.org/0000-0001-7621-7028","contributorId":4187,"corporation":false,"usgs":true,"family":"Sepulveda","given":"Adam","email":"asepulveda@usgs.gov","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":812798,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hutchins, Patrick R. 0000-0001-5232-0821 phutchins@usgs.gov","orcid":"https://orcid.org/0000-0001-5232-0821","contributorId":198337,"corporation":false,"usgs":true,"family":"Hutchins","given":"Patrick","email":"phutchins@usgs.gov","middleInitial":"R.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":812799,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Forstchen, Meghan","contributorId":255678,"corporation":false,"usgs":false,"family":"Forstchen","given":"Meghan","email":"","affiliations":[],"preferred":false,"id":812800,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Mckeefry, Madeline","contributorId":255679,"corporation":false,"usgs":false,"family":"Mckeefry","given":"Madeline","email":"","affiliations":[],"preferred":false,"id":812801,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Swigris, Anna M","contributorId":255682,"corporation":false,"usgs":false,"family":"Swigris","given":"Anna","email":"","middleInitial":"M","affiliations":[],"preferred":false,"id":812802,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70216770,"text":"sir20205112 - 2020 - Source-tracking approach for detecting and identifying sources of wastewater in waters of Hawaiʻi","interactions":[],"lastModifiedDate":"2020-12-07T12:53:35.806349","indexId":"sir20205112","displayToPublicDate":"2020-12-04T13:51:45","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-5112","displayTitle":"Source-Tracking Approach for Detecting and Identifying Sources of Wastewater in Waters of Hawaiʻi","title":"Source-tracking approach for detecting and identifying sources of wastewater in waters of Hawaiʻi","docAbstract":"<p>Elevated concentrations of nutrients and the fecal-indicator bacteria enterococci are occasionally detected in Hawai‘i’s surface waters by the State of Hawai‘i Department of Health Clean Water Branch. Management efforts to improve the water quality of surface waters are complicated by the fact that nutrients and enterococci can originate from several sources, including wastewater, animal waste, and soils. Wastewater often is the suspected source of nutrients and bacteria, but the source may not always be unequivocally identifiable from the Clean Water Branch’s routine monitoring efforts. This report—prepared in cooperation with the State of Hawai‘i Department of Health Clean Water Branch—describes a source-tracking approach for Hawai‘i that is meant to help investigators determine whether wastewater is present in the environment and where wastewater might be originating, if it is present. Wastewater sources include domestic wastewater entering the environment through on-site disposal systems and municipal wastewater entering the environment through leaky sewer systems or injection-well disposal systems. The source-tracking approach relies on the use of field-measured water properties and multiple chemical tracers of wastewater, including optical brighteners, nutrients, hydrogen and oxygen isotopes in water, nitrogen and oxygen isotopes in nitrate, organic waste compounds, and human-use pharmaceutical compounds. The source-tracking approach proposes the following sequence of steps for investigators to execute: (1) gather background information on the study area, (2) conduct trolling-instrument surveys of physical properties of surface water and identify groundwater-discharge locations, (3) collect water samples at reconnaissance sites and analyze the samples for detergent optical brighteners and specific conductance, (4) collect water samples at targeted sites and have appropriate laboratories analyze the samples for chemical tracers of wastewater, and (5) evaluate analytical results for chemical tracers of wastewater and conclude whether wastewater is present in sampled waters. The conclusions can guide management and stakeholder efforts to protect and improve the quality of Hawai‘i’s water resources.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20205112","collaboration":"Prepared in cooperation with the State of Hawaiʻi Department of Health Clean Water Branch","usgsCitation":"Johnson, A.G., 2020, Source-tracking approach for detecting and identifying sources of wastewater in waters of Hawaiʻi: U.S. Geological Survey Scientific Investigations Report 2020–5112, 53 p., https://doi.org/10.3133/sir20205112.","productDescription":"viii, 53 p.","onlineOnly":"Y","ipdsId":"IP-109904","costCenters":[{"id":525,"text":"Pacific Islands Water Science 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 \"}}]}","contact":"<p><a href=\"mailto:dc_hi@usgs.gov\" data-mce-href=\"mailto:dc_hi@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/piwsc\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/piwsc\">Pacific Islands Water Science Center</a><br>U.S. Geological Survey<br>Inouye Regional Center<br>1845 Wasp Blvd., B176<br>Honolulu, HI 96818</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Source-Tracking Approach</li><li>Tiered Data-Collection Strategy</li><li>Evaluating Laboratory Results of Chemical Tracers of Wastewater</li><li>Developing Conclusions</li><li>Suggestions for Future Studies</li><li>Summary</li><li>References Cited</li></ul>","publishedDate":"2020-12-04","noUsgsAuthors":false,"publicationDate":"2020-12-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Johnson, Adam G. 0000-0003-2448-5746 ajohnson@usgs.gov","orcid":"https://orcid.org/0000-0003-2448-5746","contributorId":4752,"corporation":false,"usgs":true,"family":"Johnson","given":"Adam","email":"ajohnson@usgs.gov","middleInitial":"G.","affiliations":[{"id":525,"text":"Pacific Islands Water Science Center","active":true,"usgs":true}],"preferred":true,"id":806158,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70216728,"text":"ofr20201130 - 2020 - Western purple martin (Progne subis arboricola) occurrence on the Siuslaw National Forest, Summer 2019","interactions":[],"lastModifiedDate":"2020-12-04T19:22:28.721479","indexId":"ofr20201130","displayToPublicDate":"2020-12-03T14:34:12","publicationYear":"2020","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2020-1130","displayTitle":"Western Purple Martin (<em>Progne subis arboricola</em>) Occurrence on the Siuslaw National Forest, Summer 2019","title":"Western purple martin (Progne subis arboricola) occurrence on the Siuslaw National Forest, Summer 2019","docAbstract":"<p>The western subspecies of the purple martin (<i>Progne subis arboricola</i>) is currently listed as a “critically” sensitive species in four ecoregions of western Oregon: Coast Range, Klamath Mountains, West Cascades, and Willamette Valley (Oregon Department of Fish and Wildlife, 2019). Importantly distinct from the abundant and widespread eastern subspecies (<i>Progne subis subis</i>), the western subspecies is of particular concern to Federal forest managers. Whereas the eastern subspecies is almost entirely dependent on artificial human-provided housing, the western subspecies continues to rely on natural cavities for nesting habitat (Bettinger, 2003). Accurate estimates of the regional abundance of the western purple martin are difficult to obtain; the most recent statewide census for Oregon, conducted in 2005, estimated the population at 1,100 pairs (Western Purple Martin Working Group, 2010). Several factors, including a small population size, loss of breeding habitat, and reductions in the number of suitable nesting sites have put populations of the western purple martin at risk throughout much of the Pacific Northwest region (Rockwell, 2019).</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20201130","usgsCitation":"Hagar, J.C., and Branch, E.C., 2020, Western purple martin (<em>Progne subis arboricola</em>) occurrence on the Siuslaw National Forest, summer 2019: U.S. Geological Survey Open-File Report 2020-1130, 25 p., https://doi.org/10.3133/ofr20201130.","productDescription":"iv, 25 p.","onlineOnly":"Y","ipdsId":"IP-117452","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"links":[{"id":380937,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2020/1130/coverthb.jpg"},{"id":380938,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2020/1130/ofr20201130.pdf","text":"Report","size":"18 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2020-1130"}],"country":"United States","state":"Oregon","otherGeospatial":"Siuslaw National Forest","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -124.14001464843749,\n              43.691707903073805\n            ],\n            [\n              -123.42041015624999,\n              43.691707903073805\n            ],\n            [\n              -123.42041015624999,\n              44.66865287227321\n            ],\n            [\n              -124.14001464843749,\n              44.66865287227321\n            ],\n            [\n              -124.14001464843749,\n              43.691707903073805\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_or@usgs.gov\" data-mce-href=\"mailto:dc_or@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/or-water\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/or-water\">Oregon Water Science Center</a><br>U.S. Geological Survey<br>2130 SW 5th Avenue<br>Portland, Oregon 97201</p>","tableOfContents":"<ul><li>Background</li><li>Methods</li><li>Results</li><li>Discussion</li><li>Conclusions</li><li>References Cited</li><li>Appendix A</li></ul>","publishedDate":"2020-12-03","noUsgsAuthors":false,"publicationDate":"2020-12-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Hagar, Joan 0000-0002-3044-6607 joan_hagar@usgs.gov","orcid":"https://orcid.org/0000-0002-3044-6607","contributorId":3369,"corporation":false,"usgs":true,"family":"Hagar","given":"Joan","email":"joan_hagar@usgs.gov","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true},{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"preferred":true,"id":805997,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Branch, Eric 0000-0003-1645-6849","orcid":"https://orcid.org/0000-0003-1645-6849","contributorId":245350,"corporation":false,"usgs":false,"family":"Branch","given":"Eric","email":"","affiliations":[],"preferred":false,"id":805998,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
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