{"pageNumber":"63","pageRowStart":"1550","pageSize":"25","recordCount":184606,"records":[{"id":70267954,"text":"70267954 - 2025 - A multistate capture-recapture model to estimate reproduction of North Atlantic right whales","interactions":[],"lastModifiedDate":"2025-06-09T14:55:20.441118","indexId":"70267954","displayToPublicDate":"2025-06-05T09:52:07","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1497,"text":"Endangered Species Research","active":true,"publicationSubtype":{"id":10}},"title":"A multistate capture-recapture model to estimate reproduction of North Atlantic right whales","docAbstract":"<p><span>The recent steep decline of the endangered North Atlantic right whale&nbsp;</span><i>Eubalaena glacialis</i><span>&nbsp;can be attributed to high mortality combined with low reproduction. While the former is a clear result of anthropogenic activity, the latter involves more complexity. Evidence suggests that both short-term fluctuations in prey availability and long-term decline in health are responsible for depressed right whale calving rates. To facilitate an assessment of extinction risk, we developed a multistate capture-recapture model that estimated the probability of calving using extensive sightings data from 1990-2019. The model estimated sub-lethal effects of severe injury on calving probability and modeled temporal variability in calving as related to indices of prey availability (</span><i>Calanus</i><span>&nbsp;spp. biomass) and an apparent regime shift. The average annual probability of calving for known-breeding females, given average prey conditions, decreased from 0.217 [95% CI: 0.162, 0.281] to 0.142 [95% CI: 0.067, 0.252] after the 2010 regime shift. The model indicated strong evidence of a relationship between calving probability and the prey index from the eastern Gulf of Maine, although this relationship effectively disappeared after 2010; moderate evidence for a relationship with prey from the southwest Gulf of St. Lawrence remained. Weak evidence of reduced calving probability due to severe injury resulted from low sample sizes, given increased mortality for individuals observed with severe injuries. The regime effect is hypothesized to be capturing a long-term decline in health due to a combination of decreasing habitat quality resulting from climate change and potentially chronic sublethal injuries (e.g. entanglements). Our reproduction model provides demographic parameter estimates that can be used in population projections for North Atlantic right whales, although uncertainty remains in the mechanisms responsible for recent declines in calving.</span></p>","language":"English","publisher":"Inter-Research Science Publisher","doi":"10.3354/esr01406","usgsCitation":"Linden, D., Pace, R., Garrison, L.P., Hostetler, J.A., Knowlton, A., Lesage, V., Williams, R., and Runge, M.C., 2025, A multistate capture-recapture model to estimate reproduction of North Atlantic right whales: Endangered Species Research, v. 57, p. 91-102, https://doi.org/10.3354/esr01406.","productDescription":"12 p.","startPage":"91","endPage":"102","ipdsId":"IP-157964","costCenters":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":490621,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3354/esr01406","text":"Publisher Index Page"},{"id":490260,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"57","noUsgsAuthors":false,"publicationDate":"2025-06-05","publicationStatus":"PW","contributors":{"authors":[{"text":"Linden, Daniel W.","contributorId":229525,"corporation":false,"usgs":false,"family":"Linden","given":"Daniel W.","affiliations":[{"id":36803,"text":"NOAA","active":true,"usgs":false}],"preferred":false,"id":939767,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Pace, Richard M III","contributorId":352277,"corporation":false,"usgs":false,"family":"Pace","given":"Richard M","suffix":"III","affiliations":[{"id":36612,"text":"National Marine Fisheries Service","active":true,"usgs":false}],"preferred":false,"id":939768,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Garrison, Lance P.","contributorId":296893,"corporation":false,"usgs":false,"family":"Garrison","given":"Lance","email":"","middleInitial":"P.","affiliations":[{"id":64230,"text":"NOAA-NMFS Southwest Fisheries Science Center","active":true,"usgs":false}],"preferred":false,"id":939769,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hostetler, J. A. 0000-0003-3669-1758","orcid":"https://orcid.org/0000-0003-3669-1758","contributorId":11319,"corporation":false,"usgs":true,"family":"Hostetler","given":"J.","middleInitial":"A.","affiliations":[],"preferred":true,"id":939770,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Knowlton, Amy R.","contributorId":352046,"corporation":false,"usgs":false,"family":"Knowlton","given":"Amy R.","affiliations":[{"id":37373,"text":"New England Aquarium","active":true,"usgs":false}],"preferred":false,"id":939771,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Lesage, Veronique","contributorId":352311,"corporation":false,"usgs":false,"family":"Lesage","given":"Veronique","affiliations":[{"id":13677,"text":"Fisheries and Oceans Canada","active":true,"usgs":false}],"preferred":false,"id":939772,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Williams, Robert A. 0000-0002-2973-8493","orcid":"https://orcid.org/0000-0002-2973-8493","contributorId":203802,"corporation":false,"usgs":false,"family":"Williams","given":"Robert A.","affiliations":[{"id":36721,"text":"USGS-Emeritus","active":true,"usgs":false}],"preferred":false,"id":939773,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Runge, Michael C. 0000-0002-8081-536X mrunge@usgs.gov","orcid":"https://orcid.org/0000-0002-8081-536X","contributorId":3358,"corporation":false,"usgs":true,"family":"Runge","given":"Michael","email":"mrunge@usgs.gov","middleInitial":"C.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":939774,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70267921,"text":"70267921 - 2025 - Global tracking of marine megafauna space use reveals how to achieve conservation targets","interactions":[],"lastModifiedDate":"2025-06-06T16:35:47.740313","indexId":"70267921","displayToPublicDate":"2025-06-05T09:49:38","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3338,"text":"Science","active":true,"publicationSubtype":{"id":10}},"title":"Global tracking of marine megafauna space use reveals how to achieve conservation targets","docAbstract":"<p><span>The recent Kunming-Montreal Global Biodiversity Framework (GBF) sets ambitious goals but no clear pathway for how zero loss of important biodiversity areas and halting human-induced extinction of threatened species will be achieved. We assembled a multi-taxa tracking dataset (11 million geopositions from 15,845 tracked individuals across 121 species) to provide a global assessment of space use of highly mobile marine megafauna, showing that 63% of the area that they cover is used 80% of the time as important migratory corridors or residence areas. The GBF 30% threshold (Target 3) will be insufficient for marine megafauna’s effective conservation, leaving important areas exposed to major anthropogenic threats. Coupling area protection with mitigation strategies (e.g., fishing regulation, wildlife-traffic separation) will be essential to reach international goals and conserve biodiversity.</span></p>","language":"English","publisher":"American Association for the Advancement of Science","doi":"10.1126/science.adl0239","usgsCitation":"Sequeira, A.M., Rodriguez, J.P., Marley, S., Calich, H.J., van der Mheen, M., VanCompernolle, M., Arrowsmith, L., Peel, L., Queiroz, N., Vedor, M., da Costa, I., Mucientes, G., Couto, A., Humphries, N., Abalo-Morla, S., Abascal, F., Abercrombie, D., Abrantes, K., Abreu-Grobois, F., Afonso, A., Afonso, P., Ahonen, H., Åkesson, S., Alfaro-Shigueto, J., Andrews, R.D., Angelier, F., Antonopoulou, M., Arata, J., Araujo, G., Arauz, R., Arcos, J.M., Arregui, I., Arrizabalaga, H., Auger-Methe, M., Bach, S., Bailleul, F., Baird, R., Balazs, G., Barco, S., Barnett, A., Baverstock, W., Baylis, A.M., Beard, A., Bécares, J., Belda, E.J., Bell, I., Bennison, A., Benson, S., Bernal, D., Berumen, M., Bessudo, S., Bezerra, N., Blaison, A., Blanco, G., Block, B.A., Bolton, M., Bond, M., Bonfil, R., Braun, C., Broderick, A.C., Brooke, M., Brooks, A., Brooks, E., Bruno, I.M., Burns, J.M., Byrne, M.E., Campana, S., Campbell, H., Campbell, R., Carlisle, A., Carmichael, R.H., Carroll, G., Casale, P., Ceia, F.R., Chapman, D., Chapple, T., Charrassin, J., Chiaradia, A., Chisholm, J., Clarke, C., Clay, T., Cleguer, C., Clingham, E., Clua, E., Cochran, J., Constantine, R., Cooper, R., Crochelet, E., Cronin, M., Cuevas, E., DaCosta, K., Dagorn, L., Daly, R., Davis, R.W., de Bruyn, N., Delgado-Trejo, C., Dellinger, T., Derville, S., Diamant, S., DiMatteo, A., Dodge, K., Doherty, P.D., Double, M., Dove, A., Doyle, T., Drew, M., Dubbs, L., Duffy, C., Dutton, P., Edwards, E., Einoder, L., Erdmann, M., Espinoza, E., Esteban, N., Fagundes, A.I., Feare, C., Ferguson, S.H., Ferreira, L.C., Ferretti, F., Filmalter, J., Finucci, B., Fischer, G., Fitzpatrick, R., Fontes, J., Formia, A., Fossette, S., Francis, M., Friedlaender, A., Furtado, M., Gallagher, A.J., Garrigue, C., Gennari, E., Gilchrist, H.G., Godley, B.J., Goldsworthy, S.D., Gollock, M., González Carman, V., Grecian, W.J., Green, J., Guinet, C., Gustafson, J., Guttridge, T., Guzman, H., Hamer, D., Hamer, K.C., Hammerschlag, N., Hammill, M., Harman, L., Harrison, E., Hart, C., Harris, A., Hastie, G., Hazin, F., Heard, M., Hearn, A., Heide-Jorgensen, M.P., Henry, L., Henry, R.W., Hernandez, V., Herrera, A., Hindell, M.A., Holdsworth, J., Holmes, B., Howey, L., Hoyos Padilla, E., Huckstadt, L., Hueter, R., Lara, P., Hussey, N.E., Huveneers, C., Hyland, K., Irion, D., Jacoby, D., Jaeger, A., Jaidah, M., Jessopp, M., Jewell, O., Johnson, R., Jones, C.G., Jonsen, I., Jordan, L., Jorgensen, S., Kato, A., Ketchum, J., Kitaysky, A., Klimley, A.P., Kock, A., Koen, P., Ladino Archila, F., Lana, F., Lane, J., Le Corre, M., Lea, M., Leat, E., Lee, O., Levenson, J., Ley-Quiñonez, C., Llewellyn, F., Lockhart, G., Lopez, G., Lopez Mendilaharsu, M., Lowther, A., Luschi, P., Lutcavage, M., Lyon, W., Macena, B., Mackay, A., Madden Hof, C., Mallory, M.L., Mangel, J.C., Manning, M., Mansfield, K., March, D., Marco, A., Marcoux, M., Acuña-Marrero, D., Marsh, H., Marshall, H., Mate, B., McAllister, J., McGuire, R.L., McKenzie, J., McLeay, L., McMahon, C., Modest, M., Morris, J.T., Muelbert, M., Namboothri, N., Nichols, W.J., Nicoll, M.A., Norman, B., Norris, K., Olsen, E., Oppel, S., Orlowski, S., Pagano, A.M., Page, B., Paiva, V.H., Palacios, D., Papastamatiou, Y., Parker, D., Pattiaratchi, C.B., Peckham, H., Peñaherrera-Palma, C., Pepperell, J., Phillips, R.A., Pierce, S., Pikesley, S., Pilcher, N.J., Pinet, P., Pinkerton, M., Pirotta, E., Plot, V., Powell, A., Powers, K., Prebble, C., Preston, T., Prieto, R., Prosdocimi, L., Quinn, J.L., Quintero, L., Raclot, T., Ramirez, I., Ramírez-Macías, D., Ramos, J.A., Read, A., Ream, R., Rees, A., Reina, R.D., Reisinger, R., Revuelta, O., Reynolds, S., Richardson, A.J., Riekkola, L., Riet-Sapriza, F., Robinson, D., Robinson, P.W., Rocha, C., Rogers, T., Rohner, C., Ropert-Coudert, Y., Ross, M., Rowat, D., Ruhomaun, K., Sagar, P., Samoilys, M., Sanchez, S., Sandoval-Lugo, A., dos Santos, E., Santos, A., Scales, K., Schofield, G., Semmens, J., Setyawan, E., Shaffer, S.A., Shanker, K., Sheaves, M., Shillinger, G., Shivji, M., Sianipar, A., Silk, J., Silva, M., Sim, J., Simpson, S., Skomal, G.B., Slip, D., Smale, M., Soler, G., Soria, M., Sousa, L., Southall, E., Stahl, J., Stehfest, K., Sterling, J., Stevens, J., Stevens, G., Stewart, J., Swaminathan, A., Takahashi, A., Tatayah, V., Thiebot, J., Thompson, P.M., Thorrold, S., Thums, M., Tomas, J., Torres, L., Towner, A., Trathan, P., Tyminski, J., van Buiten, R., van Dam, R.P., Vandeperre, F., Varo-Cruz, N., Vaudo, J., Vely, M., Villegas-Amtmann, S., Vincent, C., Waayers, D., Wanless, S., Watanabe, Y., Watt, C., Weber, S., Weber, N., Weise, M.J., Welch, L., Wells, R.S., Werry, J., Wetherbee, B., White, T., Whiting, S., Whiting, A., Wiebkin, A., Wienecke, B., Wildermann, N.E., Wiley, D., Will, A., Williams, S., Windstein, M., Wischnewski, S., Witt, M.J., Womersley, F., Wood, A., Wright, L., Xavier, J., Yamamoto, T., Yurkowski, D.J., Zarate, P., Zavala-Norzagaray, A., Zerbini, A., Costa, D.P., Harcourt, R., Meekan, M.G., Hays, G.C., Sims, D.W., Duarte, C.M., and Eguíluz, V., 2025, Global tracking of marine megafauna space use reveals how to achieve conservation targets: Science, v. 388, no. 6751, p. 1086-1097, https://doi.org/10.1126/science.adl0239.","productDescription":"12 p.","startPage":"1086","endPage":"1097","ipdsId":"IP-144077","costCenters":[{"id":65299,"text":"Alaska Science Center Ecosystems","active":true,"usgs":true}],"links":[{"id":490668,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://admin.research-repository.uwa.edu.au/en/publications/651e3bbd-fc33-43ad-a5de-a68785f4e949","text":"External 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,{"id":70267918,"text":"70267918 - 2025 - Multi-scale spectroscopy to map intertidal microbial biofilm community and trait diversity","interactions":[],"lastModifiedDate":"2025-06-06T14:48:10.315709","indexId":"70267918","displayToPublicDate":"2025-06-05T09:42:16","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":9326,"text":"JGR Biogeosciences","active":true,"publicationSubtype":{"id":10}},"title":"Multi-scale spectroscopy to map intertidal microbial biofilm community and trait diversity","docAbstract":"<p><span>Intertidal microbial biofilms, or microphytobenthos, support estuarine biogeochemical cycling, the physical stability of mudflats, and food webs, particularly those of migratory shorebirds. Photosynthetic biofilms dominated by diatoms, cyanobacteria, and chlorophytes represent a significant fraction of biofilm biomass and contain pigments that can be detected with remote sensing. These diverse biofilm community types vary in indicator pigments and functional traits related to biogeochemical cycling and nutritional quality. We modeled and mapped spatial variation in intertidal biofilm distribution, quantity, diversity, and functional traits using multi-scale spectroscopic data collected within southern San Francisco Bay, California, USA (South SFB). We developed a new biofilm index (B-index) from 5&nbsp;mm HySpex spectra to detect biofilm presence. We developed single and multiple response partial least squares regression (PLS) models of chlorophyll</span><i>-a</i><span>&nbsp;(chl</span><i>-a</i><span>; biomass indicator), indicator pigments: fucoxanthin and diadinoxanthin (diatoms), zeaxanthin (cyanobacteria), and chl</span><i>-b</i><span>&nbsp;(chlorophytes), and functional traits: carbohydrates, lipids, and total organic carbon from paired in situ biofilm data and field spectra. The B-index and PLS models were scaled to South SFB with a 3.7&nbsp;m AVIRIS-NG hyperspectral image. The model %RMSE calculated from AVIRIS-NG test samples ranged from 12.7% for chl</span><i>-a</i><span>&nbsp;to 49% for chl</span><i>-b</i><span>; for six of the eight models, %RMSE was 23% or below. Mapped community types differed in mapped traits, with average lipid concentrations three times higher in areas indicated as diatoms compared to other groups. Available maps depict for the first time the spatial variation of an important shorebird food resource and inform the contribution of intertidal biofilm in carbon and nutrient cycling.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2024JG008520","usgsCitation":"Byrd, K.B., Palacios, S., Taylor, N.C., Woo, I., Moskal, S.M., Kokaly, R.F., Hoefen, T.M., Chapman, J., and De La Cruz, S.E., 2025, Multi-scale spectroscopy to map intertidal microbial biofilm community and trait diversity: JGR Biogeosciences, v. 130, no. 6, e2024JG008520, 23 p., https://doi.org/10.1029/2024JG008520.","productDescription":"e2024JG008520, 23 p.","ipdsId":"IP-171397","costCenters":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"links":[{"id":490197,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"South San Francisco 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,{"id":70268836,"text":"70268836 - 2025 - Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)","interactions":[{"subject":{"id":70268836,"text":"70268836 - 2025 - Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)","indexId":"70268836","publicationYear":"2025","noYear":false,"title":"Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)"},"predicate":"SUPERSEDED_BY","object":{"id":70273464,"text":"70273464 - 2026 - Novel adomaviruses associated with blotchy bass syndrome in black basses (<i>Micropterus spp.</i>)","indexId":"70273464","publicationYear":"2026","noYear":false,"title":"Novel adomaviruses associated with blotchy bass syndrome in black basses (<i>Micropterus spp.</i>)"},"id":1}],"supersededBy":{"id":70273464,"text":"70273464 - 2026 - Novel adomaviruses associated with blotchy bass syndrome in black basses (<i>Micropterus spp.</i>)","indexId":"70273464","publicationYear":"2026","noYear":false,"title":"Novel adomaviruses associated with blotchy bass syndrome in black basses (<i>Micropterus spp.</i>)"},"lastModifiedDate":"2026-01-26T16:23:39.390188","indexId":"70268836","displayToPublicDate":"2025-06-05T09:40:21","publicationYear":"2025","noYear":false,"publicationType":{"id":27,"text":"Preprint"},"publicationSubtype":{"id":32,"text":"Preprint"},"seriesTitle":{"id":19846,"text":"BioRxiv","active":true,"publicationSubtype":{"id":32}},"title":"Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)","docAbstract":"<p><span>Black bass (</span><i>Micropterus spp.</i><span>) are the most important warmwater game fishes in the United States. They have high socioeconomic and recreational value and support an important aquaculture industry. Since 2008, fisheries managers have been reporting the observation of hyperpigmented melanistic lesions (HPMLs) on smallmouth bass (</span><i>M. dolomieu</i><span>) in different ecoregions of the United States. Similar HPMLs have been observed in largemouth bass (</span><i>M. nigricans</i><span>) since the 1980’s. Here, we report a close association between novel adomaviruses and the hallmark blotchy clinical presentation of hyperpigmented lesions on the skin smallmouth and largemouth black bass and provide evidence that satisfies Rivers’ postulates. The two adomaviruses are structurally and phylogenetically similar but share only 68.0% identity at aligned nucleotide sites and each has been found in only one host species to date. The manifestation of this skin disease appears to be seasonal in both species, primarily affects adults and is of unknown health consequence. Although the significance of infection to fish health remains unclear, understanding the disease ecology of these can inform biosecurity and the interjurisdictional movement of individuals. Moreover, as hyperpigmentation in other fish species is often idiopathic, our findings reframe perspectives for future investigations into this clinical presentation in other species.</span></p>","largerWorkTitle":"BioRXiv","language":"English","doi":"10.1101/2025.06.01.657292","usgsCitation":"Iwanowicz, L.R., Raines, C.D., Young, K., Blazer, V., Walsh, H.L., Smith, G., Holt, C., Odenkirk, J., Jones, T., Hessenauer, J., Biggs, M., Buck, C.B., Greer, J.B., and Cornman, R.S., 2025, Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.): BioRxiv, https://doi.org/10.1101/2025.06.01.657292.","productDescription":"53 p.","ipdsId":"IP-177992","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true},{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":491795,"rank":2,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":492048,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1101/2025.06.01.657292","text":"Publisher Index Page"}],"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Iwanowicz, Luke R. 0000-0002-1197-6178","orcid":"https://orcid.org/0000-0002-1197-6178","contributorId":339852,"corporation":false,"usgs":false,"family":"Iwanowicz","given":"Luke","middleInitial":"R.","affiliations":[{"id":36589,"text":"USDA","active":true,"usgs":false}],"preferred":false,"id":942284,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Raines, Clayton D. 0000-0002-0403-190X","orcid":"https://orcid.org/0000-0002-0403-190X","contributorId":296362,"corporation":false,"usgs":true,"family":"Raines","given":"Clayton","middleInitial":"D.","affiliations":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":942285,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Young, Kelsey E.","contributorId":335011,"corporation":false,"usgs":false,"family":"Young","given":"Kelsey E.","affiliations":[{"id":38788,"text":"NASA","active":true,"usgs":false}],"preferred":false,"id":942286,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Blazer, Vicki S. 0000-0001-6647-9614","orcid":"https://orcid.org/0000-0001-6647-9614","contributorId":349694,"corporation":false,"usgs":true,"family":"Blazer","given":"Vicki S.","affiliations":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":942287,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Walsh, Heather L. 0000-0001-6392-4604 hwalsh@usgs.gov","orcid":"https://orcid.org/0000-0001-6392-4604","contributorId":4696,"corporation":false,"usgs":true,"family":"Walsh","given":"Heather","email":"hwalsh@usgs.gov","middleInitial":"L.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":942288,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Smith, Geoff","contributorId":349691,"corporation":false,"usgs":false,"family":"Smith","given":"Geoff","affiliations":[{"id":56913,"text":"PA Fish & Boat Commission","active":true,"usgs":false}],"preferred":false,"id":942289,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Holt, Cynthia","contributorId":357715,"corporation":false,"usgs":false,"family":"Holt","given":"Cynthia","affiliations":[{"id":27442,"text":"Texas parks and Wildlife Department","active":true,"usgs":false}],"preferred":false,"id":942290,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Odenkirk, John","contributorId":219514,"corporation":false,"usgs":false,"family":"Odenkirk","given":"John","affiliations":[{"id":35592,"text":"Virginia Department of Game and Inland Fisheries","active":true,"usgs":false}],"preferred":false,"id":942291,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Jones, Tom","contributorId":288322,"corporation":false,"usgs":false,"family":"Jones","given":"Tom","email":"","affiliations":[{"id":61728,"text":"Vermont Fish & Wildlife Department","active":true,"usgs":false}],"preferred":false,"id":942292,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Hessenauer, Jan-Michael","contributorId":257795,"corporation":false,"usgs":false,"family":"Hessenauer","given":"Jan-Michael","email":"","affiliations":[{"id":36986,"text":"Michigan Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":942293,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Biggs, Morgan Alexandra 0000-0002-5360-8613","orcid":"https://orcid.org/0000-0002-5360-8613","contributorId":345155,"corporation":false,"usgs":true,"family":"Biggs","given":"Morgan Alexandra","affiliations":[{"id":37464,"text":"WMA - Laboratory & Analytical Services Division","active":true,"usgs":true}],"preferred":true,"id":942294,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Buck, Christopher B.","contributorId":354298,"corporation":false,"usgs":false,"family":"Buck","given":"Christopher","middleInitial":"B.","affiliations":[{"id":84615,"text":"Lab of Cellular Oncology, National Cancer Institute, National Institutes of Health","active":true,"usgs":false}],"preferred":false,"id":942295,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Greer, Justin Blaine 0000-0001-6660-9976","orcid":"https://orcid.org/0000-0001-6660-9976","contributorId":265183,"corporation":false,"usgs":true,"family":"Greer","given":"Justin","email":"","middleInitial":"Blaine","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":942296,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Cornman, Robert S. 0000-0001-9511-2192 rcornman@usgs.gov","orcid":"https://orcid.org/0000-0001-9511-2192","contributorId":5356,"corporation":false,"usgs":true,"family":"Cornman","given":"Robert","email":"rcornman@usgs.gov","middleInitial":"S.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":942297,"contributorType":{"id":1,"text":"Authors"},"rank":14}]}}
,{"id":70268894,"text":"70268894 - 2025 - Population dynamics of White Sturgeon in the upper Snake River, Idaho: Evaluation of management options for a harvest fishery","interactions":[],"lastModifiedDate":"2025-08-18T15:14:04.882222","indexId":"70268894","displayToPublicDate":"2025-06-05T09:36:53","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2886,"text":"North American Journal of Fisheries Management","active":true,"publicationSubtype":{"id":10}},"title":"Population dynamics of White Sturgeon in the upper Snake River, Idaho: Evaluation of management options for a harvest fishery","docAbstract":"<div class=\" sec\"><div class=\"title\">Objective</div><p class=\"chapter-para\">Understanding how fish populations will respond to management actions is critical for making effective management ­decisions. This study provides important information regarding population demographics for a nonnative, hatchery-implemented population of White Sturgeon<span>&nbsp;</span><i>Acipenser transmontanus</i>. We investigated the population dynamics of White Sturgeon in the upper Snake River, Idaho, and developed an age-structured population model to evaluate potential stocking and harvest scenarios (e.g., length limits and annual quotas).</p></div><div class=\" sec\"><div class=\"title\">Methods</div><p class=\"chapter-para\">White Sturgeon were sampled from June to October 2022 and from June to August 2023 using angling (i.e., rod and reel) and setlines from a 260-km-long section of the Snake River. Capture histories from 261 known-age White Sturgeon informed age and growth analysis and an evaluation of movement trends. A closed-population capture–recapture model and an estimate of setline-specific catchability were used to estimate the total abundance of White Sturgeon in the upper Snake River. Apparent survival for the population was estimated using a Cormack–Jolly–Seber model. Finally, a population model was parameterized using information on the population dynamics of White Sturgeon in the upper Snake River. The model was used to estimate the effects of varying stocking rates and harvest scenarios (i.e., harvest slot of 76–122 cm fork length [FL] and annual quotas of 0–25 White Sturgeon harvested) on the population.</p></div><div class=\" sec\"><div class=\"title\">Results</div><p class=\"chapter-para\">In total, 340 individual White Sturgeon were captured throughout the study area, with 181 recapture events. Individuals varied in FL from 54 to 205 cm, and the mean relative weight for captures was 105.2 (SD = 14.4), suggesting relatively high body condition. Age varied from 2 to 25 years, and White Sturgeon moved an average of 8.1 km (SD = 23.5) downstream from stocking locations. Estimated abundance of White Sturgeon in the tailwaters of American Falls Dam was 428 fish (95% CI = 403–463). That abundance estimate was used to inform a total abundance estimate of 887 White Sturgeon (95% CI = 835–960) in the study area. Apparent annual survival was 0.79 (95% CI = 0.64–0.89). A stocking rate of 285 age-2 White Sturgeon/year was necessary to maintain current abundance. For every five fish harvested (harvest slot = 76–122 cm FL) per year, estimated abundance decreased by about 2.2% over 20 years.</p></div><div class=\" sec\"><div class=\"title\">Conclusions</div><p class=\"chapter-para\">Our research identified fast growth of White Sturgeon relative to other populations and relatively high mortality for a White Sturgeon population without exploitation. Also, like other studies evaluating harvest, a population model was used to illustrate the effect of varying rate functions on a fishery. The age-structured population model suggested that a harvest fishery is possible while still meeting management goals for the upper Snake River White Sturgeon fishery.</p></div>","language":"English","publisher":"American Fisheries Society","doi":"10.1093/najfmt/vqaf025","collaboration":"Idaho Department of Fish and Game","usgsCitation":"Maude, D., Bowersox, B.J., Corsi, M., Kennedy, P., High, B., Peterson, M., Watkins, C.J., and Quist, M.C., 2025, Population dynamics of White Sturgeon in the upper Snake River, Idaho: Evaluation of management options for a harvest fishery: North American Journal of Fisheries Management, v. 45, no. 4, p. 540-556, https://doi.org/10.1093/najfmt/vqaf025.","productDescription":"17 p.","startPage":"540","endPage":"556","ipdsId":"IP-166433","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":492013,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Idaho","otherGeospatial":"Upper Snake River","volume":"45","issue":"4","noUsgsAuthors":false,"publicationDate":"2025-06-05","publicationStatus":"PW","contributors":{"authors":[{"text":"Maude, Donavan","contributorId":357760,"corporation":false,"usgs":false,"family":"Maude","given":"Donavan","affiliations":[{"id":36394,"text":"University of Idaho","active":true,"usgs":false}],"preferred":false,"id":942528,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bowersox, Brett J.","contributorId":265299,"corporation":false,"usgs":false,"family":"Bowersox","given":"Brett","email":"","middleInitial":"J.","affiliations":[{"id":36224,"text":"Idaho Department of Fish and Game","active":true,"usgs":false}],"preferred":false,"id":942529,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Corsi, Matthew P.","contributorId":171811,"corporation":false,"usgs":false,"family":"Corsi","given":"Matthew P.","affiliations":[],"preferred":false,"id":942530,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kennedy, Patrick","contributorId":202687,"corporation":false,"usgs":false,"family":"Kennedy","given":"Patrick","email":"","affiliations":[{"id":36224,"text":"Idaho Department of Fish and Game","active":true,"usgs":false}],"preferred":false,"id":942531,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"High, Brett","contributorId":274499,"corporation":false,"usgs":false,"family":"High","given":"Brett","affiliations":[{"id":56023,"text":"idfg","active":true,"usgs":false}],"preferred":false,"id":942532,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Peterson, Mike","contributorId":357761,"corporation":false,"usgs":false,"family":"Peterson","given":"Mike","affiliations":[{"id":36224,"text":"Idaho Department of Fish and Game","active":true,"usgs":false}],"preferred":false,"id":942533,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Watkins, Carson J.","contributorId":171708,"corporation":false,"usgs":false,"family":"Watkins","given":"Carson","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":942612,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Quist, Michael C. 0000-0001-8268-1839","orcid":"https://orcid.org/0000-0001-8268-1839","contributorId":207142,"corporation":false,"usgs":true,"family":"Quist","given":"Michael","middleInitial":"C.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":942534,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70270673,"text":"70270673 - 2025 - O Romeo! Environmental DNA could prevent a tragedy for the elusive Chucky Madtom (Noturus crypticus)","interactions":[],"lastModifiedDate":"2025-08-22T14:26:20.9016","indexId":"70270673","displayToPublicDate":"2025-06-05T09:16:15","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":1,"text":"Federal Government Series"},"seriesTitle":{"id":5373,"text":"Cooperator Science Series","active":true,"publicationSubtype":{"id":1}},"seriesNumber":"CSS-169-2025","displayTitle":"O Romeo! Environmental DNA could prevent a tragedy for the elusive Chucky Madtom (<i>Noturus crypticus</i>)","title":"O Romeo! Environmental DNA could prevent a tragedy for the elusive Chucky Madtom (Noturus crypticus)","docAbstract":"<p><span>Using environmental DNA (eDNA) surveillance methods, we report the first evidence of the persistence of the Chucky Madtom (<i>Noturus crypticus</i>) in Little Chucky Creek, Tennessee, which has been absent from conventional surveys since 2004, and in Dunn Creek, Tennessee, where it was last collected in 1940. This highlights the utility of eDNA for detecting cryptic, rare fish species that may persist at extremely low population densities when conventional surveys fail, as well as its effectiveness as a contemporary tool to guide targeted conventional sampling efforts; however, it is not intended to replace the ‘in hand’ detection of the species.</span></p>","language":"English","publisher":"U.S. Fish and Wildlife Service","doi":"10.3996/css69379551","usgsCitation":"Paine, R.T., Swain-Menzel, H., Rosenberger, A.E., and Velasquez, A., 2025, O Romeo! Environmental DNA could prevent a tragedy for the elusive Chucky Madtom (Noturus crypticus): Cooperator Science Series CSS-169-2025, ii, 25 p., https://doi.org/10.3996/css69379551.","productDescription":"ii, 25 p.","ipdsId":"IP-177206","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":494513,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Tennessee","otherGeospatial":"Dunn Creek, Little Chucky Creek, Yellow Breeched Creek","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -83.25,\n              36.1667\n            ],\n            [\n              -83.25,\n              35.65\n            ],\n            [\n              -82.7,\n              35.65\n            ],\n            [\n              -82.7,\n              36.1667\n            ],\n            [\n              -83.25,\n              36.1667\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","noUsgsAuthors":false,"publicationDate":"2025-06-05","publicationStatus":"PW","contributors":{"authors":[{"text":"Paine, Robert T.","contributorId":172099,"corporation":false,"usgs":false,"family":"Paine","given":"Robert","email":"","middleInitial":"T.","affiliations":[{"id":26981,"text":"Dep't of Biology, U of Washington","active":true,"usgs":false}],"preferred":false,"id":946807,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Swain-Menzel, Hannah","contributorId":360115,"corporation":false,"usgs":false,"family":"Swain-Menzel","given":"Hannah","affiliations":[{"id":56209,"text":"Tennessee Tech University","active":true,"usgs":false}],"preferred":false,"id":946808,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Rosenberger, Amanda E. 0000-0002-5520-8349 arosenberger@usgs.gov","orcid":"https://orcid.org/0000-0002-5520-8349","contributorId":5581,"corporation":false,"usgs":true,"family":"Rosenberger","given":"Amanda","email":"arosenberger@usgs.gov","middleInitial":"E.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":396,"text":"Missouri Water Science Center","active":true,"usgs":true}],"preferred":true,"id":946809,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Velasquez, Auburn","contributorId":360406,"corporation":false,"usgs":false,"family":"Velasquez","given":"Auburn","affiliations":[],"preferred":false,"id":947015,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70270757,"text":"70270757 - 2025 - Relationships between larval fish drift, time of day and discharge in an Ozark stream","interactions":[],"lastModifiedDate":"2025-08-22T15:08:31.928094","indexId":"70270757","displayToPublicDate":"2025-06-05T08:00:08","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2299,"text":"Journal of Freshwater Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Relationships between larval fish drift, time of day and discharge in an Ozark stream","docAbstract":"<p><span>We examined the relationship between larval fish numbers and discharge during a high flow event in Bear Creek, Arkansas, a small Ozark stream. Additionally, we examined the relationship between fish numbers and time of day, and the spatial distribution of families and size classes. A total of 3,083 fish from five families were collected. Leuciscidae was the dominant family collected, followed by Percidae, and Catostomidae. Larval fish in Bear Creek were not susceptible to increased discharge from the flood event, as all three families exhibited strong significant negative relationships to discharge at night when discharge began to decline. Larval fish in Bear Creek drifted significantly more at night than during the day, with the exception of large percids, which exhibited no diel pattern. Leuciscidae and small Percidae showed a spatial pattern of distribution across the stream at night, with higher drift densities in near shore nets. The results from our study indicate that fish drift in Bear Creek was an active process, with most larval fish drifting in response to decreased light intensity. We suggest future studies consider the effects of flood intensity on larval fish drift relative to diel periodicity.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/02705060.2025.2503366","collaboration":"National Park Service","usgsCitation":"Magoulick, D.D., and Graham, C.L., 2025, Relationships between larval fish drift, time of day and discharge in an Ozark stream: Journal of Freshwater Ecology, v. 40, no. 1, 2503366, 13 p., https://doi.org/10.1080/02705060.2025.2503366.","productDescription":"2503366, 13 p.","ipdsId":"IP-175362","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":495038,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1080/02705060.2025.2503366","text":"Publisher Index Page"},{"id":494520,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arkansas","otherGeospatial":"Bear Creek, northwestern Arkansas","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -94.58624413028403,\n              36.509156092742955\n            ],\n            [\n              -94.58624413028403,\n              34.92752982412499\n            ],\n            [\n              -92.28745981781466,\n              34.92752982412499\n            ],\n            [\n              -92.28745981781466,\n              36.509156092742955\n            ],\n            [\n              -94.58624413028403,\n              36.509156092742955\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"40","issue":"1","noUsgsAuthors":false,"publicationDate":"2025-06-05","publicationStatus":"PW","contributors":{"authors":[{"text":"Magoulick, Daniel D. 0000-0001-9665-5957 danmag@usgs.gov","orcid":"https://orcid.org/0000-0001-9665-5957","contributorId":2513,"corporation":false,"usgs":true,"family":"Magoulick","given":"Daniel","email":"danmag@usgs.gov","middleInitial":"D.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":947003,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Graham, Christy L.","contributorId":360381,"corporation":false,"usgs":false,"family":"Graham","given":"Christy","middleInitial":"L.","affiliations":[{"id":37007,"text":"Arkansas Game and Fish Commission","active":true,"usgs":false}],"preferred":false,"id":947004,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70266864,"text":"sir20255006 - 2025 - Hydrogeology and groundwater quality in the Snake River alluvial aquifer at Jackson Hole Airport, Wyoming, 2011–20","interactions":[],"lastModifiedDate":"2025-08-14T19:15:25.073305","indexId":"sir20255006","displayToPublicDate":"2025-06-05T07:42:27","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2025-5006","displayTitle":"Hydrogeology and Groundwater Quality in the Snake River Alluvial Aquifer at Jackson Hole Airport, Wyoming, 2011–20","title":"Hydrogeology and groundwater quality in the Snake River alluvial aquifer at Jackson Hole Airport, Wyoming, 2011–20","docAbstract":"<p>The Snake River alluvial aquifer underlying the Jackson Hole Airport (JHA) in northwest Wyoming is an important source of water used for domestic, commercial, and irrigation purposes by the airport and nearby residents. The U.S. Geological Survey, in response to previously identified water-quality concerns in the area, monitored and evaluated changes in hydrogeologic characteristics and groundwater-quality conditions of the alluvial aquifer during 2011–20. During that period, the Jackson Hole Airport made several changes that potentially improved water quality at and downgradient from the airport. Well, water level, and hydrogeologic data were collected from the alluvial aquifer to identify hydrogeologic characteristic and groundwater quality changes. Additionally, results of statistical tests were applied to water-quality results to evaluate trends in selected physical properties and constituent concentrations with time. The trends of those data show that water quality did improve overall during the study period compared to previously collected data. Presumably, these trends are in response to the changes in the aircraft deicing/anti-icing fluid (ADAF) formulation used by the JHA, the many JHA infrastructure improvements made during 2011–20, the degradation of existing ADAFs in subsurface soils and groundwater, or some combination of these possibilities.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20255006","collaboration":"Prepared in cooperation with the Jackson Hole Airport Board","usgsCitation":"Wright, P.R., and Bartos, T.T., 2025, Hydrogeology and groundwater quality in the Snake River alluvial aquifer at Jackson Hole Airport, Wyoming, 2011–20: U.S. Geological Survey Scientific Investigations Report 2025–5006, 80 p., https://doi.org/10.3133/sir20255006.","productDescription":"Report: x, 80 p.; Appendix; Dataset","numberOfPages":"94","onlineOnly":"Y","additionalOnlineFiles":"Y","ipdsId":"IP-143344","costCenters":[{"id":685,"text":"Wyoming-Montana Water Science Center","active":false,"usgs":true}],"links":[{"id":494131,"rank":8,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_118633.htm","linkFileType":{"id":5,"text":"html"}},{"id":485857,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2025/5006/coverthb.jpg"},{"id":485898,"rank":7,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/sir20255006/full"},{"id":485897,"rank":6,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2025/5006/sir20255006.XML"},{"id":485863,"rank":5,"type":{"id":28,"text":"Dataset"},"url":"https://doi.org/10.5066/F7P55KJN","text":"USGS National Water Information System database","linkHelpText":"- USGS water data for the Nation"},{"id":485860,"rank":4,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2025/5006/images/"},{"id":485859,"rank":3,"type":{"id":3,"text":"Appendix"},"url":"https://pubs.usgs.gov/sir/2025/5006/downloads/","text":"Appendix 1—Tables 1.1 to 1.10"},{"id":485858,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2025/5006/sir20255006.pdf","text":"Report","size":"6.7 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2025-5006"}],"country":"United States","state":"Wyoming","otherGeospatial":"Jackson Hole Airport","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -110.9167,\n              43.667\n            ],\n            [\n              -110.9167,\n              43.4167\n            ],\n            [\n              -110.667,\n              43.4167\n            ],\n            [\n              -110.667,\n              43.667\n            ],\n            [\n              -110.9167,\n              43.667\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/wy-mt-water/\" data-mce-href=\"https://www.usgs.gov/centers/wy-mt-water/\">Wyoming-Montana Water Science Center</a><br>U.S. Geological Survey<br>3162 Bozeman Avenue<br>Helena, MT 59601</p><p><a href=\"https://pubs.usgs.gov/contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Study Design</li><li>Methods of Data Collection and Analysis</li><li>Hydrogeology Results and Discussion</li><li>Water-Quality Results and Discussion</li><li>Summary</li><li>References Cited</li><li>Appendix 1. Supplemental Data Tables</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2025-06-05","noUsgsAuthors":false,"publicationDate":"2025-06-05","publicationStatus":"PW","contributors":{"authors":[{"text":"Wright, Peter R. 0000-0003-0305-4541 prwright@usgs.gov","orcid":"https://orcid.org/0000-0003-0305-4541","contributorId":239858,"corporation":false,"usgs":true,"family":"Wright","given":"Peter","email":"prwright@usgs.gov","middleInitial":"R.","affiliations":[{"id":5050,"text":"WY-MT Water Science Center","active":true,"usgs":true}],"preferred":true,"id":936992,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bartos, Timothy T. 0000-0003-1803-4375 ttbartos@usgs.gov","orcid":"https://orcid.org/0000-0003-1803-4375","contributorId":1826,"corporation":false,"usgs":true,"family":"Bartos","given":"Timothy","email":"ttbartos@usgs.gov","middleInitial":"T.","affiliations":[{"id":685,"text":"Wyoming-Montana Water Science Center","active":false,"usgs":true}],"preferred":true,"id":936993,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70272052,"text":"70272052 - 2025 - Component identification of solid biomass fuels using reflected light microscopy: Interlaboratory study 2","interactions":[],"lastModifiedDate":"2025-11-14T16:00:04.13464","indexId":"70272052","displayToPublicDate":"2025-06-04T09:35:21","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2033,"text":"International Journal of Coal Geology","active":true,"publicationSubtype":{"id":10}},"title":"Component identification of solid biomass fuels using reflected light microscopy: Interlaboratory study 2","docAbstract":"<div id=\"sp0100\" class=\"u-margin-s-bottom\">As nations transition toward sustainable<span>&nbsp;</span>energy systems<span>, biomass has become a vital component of global energy portfolios. Derived from organic materials such as wood, agricultural residues,&nbsp;forestry&nbsp;byproducts, and organic waste, biomass is a&nbsp;renewable energy source&nbsp;with significant environmental and economic benefits. Responsible&nbsp;biomass energy production&nbsp;can improve&nbsp;waste management, reduce emissions of greenhouse gases, and mitigate&nbsp;environmental pollution. However, as the diversity of biomass-derived fuels increases, robust quality assessment methods are essential to ensure their efficiency, safety, and minimal environmental impact.</span></div><div id=\"sp0105\" class=\"u-margin-s-bottom\">Reflected<span>&nbsp;</span>light microscopy<span>&nbsp;(RLM) is one such technique with the potential to complement conventional physico-chemical analyses by enabling a rapid identification of material constituents and impurities. To refine this methodology and evaluate the reproducibility of solid biomass component identification using RLM, an interlaboratory study (ILS) was conducted. The study involved the recognition of 58 components across 45&nbsp;photomicrographs, with the participation of 65 scientists and students from 25 countries.</span></div><div id=\"sp0110\" class=\"u-margin-s-bottom\">The participants faced high difficulty identifying some of the marked components, and as a result, the percentage of correct answers ranged from 19.0&nbsp;% to 98.3&nbsp;%, with an average correct identification rate of 62.7&nbsp;%. The most challenging aspects of the identification process included distinguishing between woody and non-woody (agro) biomass, accurately identifying petroleum-derived materials, and differentiating agro biomass from<span>&nbsp;</span>inorganic matter.</div><div id=\"sp0115\" class=\"u-margin-s-bottom\">The results suggest that while RLM is an important tool for characterizing solid biomass, further development of methodology guidelines and training are necessary to enhance its effectiveness. Future research should prioritize preparing detailed, image-rich, microscopic morphological descriptions of<span>&nbsp;</span>biomass fuel<span>&nbsp;components, which could improve the accuracy and reliability of using RLM in&nbsp;biomass fuel&nbsp;characterization.</span></div>","language":"English","publisher":"Elsevier","doi":"10.1016/j.coal.2025.104814","usgsCitation":"Drobniak, A., Mastalerz, M., Jelonek, Z., Jelonek, I., Acda, M., Adsul, T., Andolšek, N.M., Animali, L., Ardakani, O., Ataide, T., Batbold, D., Bhat, M.Y., Congo, T., Donohoe, B.S., Ehinola, O., Flores, D., Fonseca, C., Ghosh, S., Gonçalves, P., Hackley, P.C., Hower, J., Jargal, L., Johnston, M.N., Kalaitzidis, S., Kędzior, S., Knowles, W., Kumar, S., Kus, J., Lis, G., Lis, K., Liu, B., Liu, B., Luo, Q., Du, M., Mencarelli, A., Mishra, D., Misz-Kennan, M., Mitillo, N., Muzyka, R., Nedzweckas, J., O'Keefe, J.M., Omodeo-Salé, S., Oyunjargal, L., Park, J., Patria, A.A., Pearson, R., Petersen, H.I., Predeanu, G., Ranjin, G., Reyes, J., Ribeiro, J., de la Rosa Rodríguez, G., Rudra, A., Sajdak, M., Sanders, M.M., Siavalas, G., Sosnowski, P., Varma, A.K., Wojtaszek-Kalaitzidi, M., Wolszczak, M., Xu, Z., Zdravkov, A., Zhao, L., Zielińska, M., and Ziemianin, K., 2025, Component identification of solid biomass fuels using reflected light microscopy: Interlaboratory study 2: International Journal of Coal Geology, v. 307, 104814, 17 p., https://doi.org/10.1016/j.coal.2025.104814.","productDescription":"104814, 17 p.","ipdsId":"IP-176822","costCenters":[{"id":49175,"text":"Geology, Energy & Minerals Science Center","active":true,"usgs":true}],"links":[{"id":496488,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"307","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Drobniak, Agnieszka","contributorId":292655,"corporation":false,"usgs":false,"family":"Drobniak","given":"Agnieszka","email":"","affiliations":[{"id":62959,"text":"IU and Indiana Geological Survey","active":true,"usgs":false}],"preferred":false,"id":949858,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mastalerz, Maria","contributorId":292654,"corporation":false,"usgs":false,"family":"Mastalerz","given":"Maria","affiliations":[{"id":62959,"text":"IU and Indiana Geological Survey","active":true,"usgs":false}],"preferred":false,"id":949859,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Jelonek, Zbigniew","contributorId":330813,"corporation":false,"usgs":false,"family":"Jelonek","given":"Zbigniew","email":"","affiliations":[{"id":79027,"text":"Centre for Biomass Energy Research and Education, University of Silesia in Katowice, ul. Będzińska 60, 41-200 Sosnowiec, Poland","active":true,"usgs":false}],"preferred":false,"id":949860,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Jelonek, Iwona","contributorId":330814,"corporation":false,"usgs":false,"family":"Jelonek","given":"Iwona","affiliations":[{"id":79027,"text":"Centre for Biomass Energy Research and Education, University of Silesia in Katowice, ul. Będzińska 60, 41-200 Sosnowiec, Poland","active":true,"usgs":false}],"preferred":false,"id":949861,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Acda, Menandro","contributorId":362035,"corporation":false,"usgs":false,"family":"Acda","given":"Menandro","affiliations":[{"id":86426,"text":"University of the Philippines Los Baños, College, Batong Malake, Los Baños, 4031 Laguna, Philippines","active":true,"usgs":false}],"preferred":false,"id":949862,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Adsul, Tushar","contributorId":330815,"corporation":false,"usgs":false,"family":"Adsul","given":"Tushar","email":"","affiliations":[{"id":79028,"text":"Indian Institute of Technology (Indian School of Mines), India","active":true,"usgs":false}],"preferred":false,"id":949863,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Andolšek, Neža Malenšek","contributorId":362036,"corporation":false,"usgs":false,"family":"Andolšek","given":"Neža","middleInitial":"Malenšek","affiliations":[{"id":86428,"text":"Geological Survey of Slovenia, Dimičeva ulica 14, 1000 Ljubljana, Slovenia","active":true,"usgs":false}],"preferred":false,"id":949864,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Animali, Lorenzo","contributorId":362037,"corporation":false,"usgs":false,"family":"Animali","given":"Lorenzo","affiliations":[{"id":86430,"text":"Università degli Studi Roma Tre, Dipartimento di Scienze, Sezione di Geologia - Via Ostiense 133, 00154 Rome, Italy","active":true,"usgs":false}],"preferred":false,"id":949865,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Ardakani, Omid","contributorId":362038,"corporation":false,"usgs":false,"family":"Ardakani","given":"Omid","affiliations":[{"id":86431,"text":"Natural Resources Canada/Geological Survey of Canada, 3303 33rd Street NW, Calgary, Alberta, Canada T2L 2A7","active":true,"usgs":false}],"preferred":false,"id":949866,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Ataide, Telma","contributorId":362039,"corporation":false,"usgs":false,"family":"Ataide","given":"Telma","affiliations":[{"id":86432,"text":"TAS - Petrographic Consulting & Auditing, Avenida Professora Dona Lilica Albeny, 194 Belvedere, Minas Gerais, Brazil","active":true,"usgs":false}],"preferred":false,"id":949867,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Batbold, Demberelsuren","contributorId":362040,"corporation":false,"usgs":false,"family":"Batbold","given":"Demberelsuren","affiliations":[{"id":86433,"text":"Mongolian Mining Corporation, Ukhaa Khudag Branch, Tsogttsetsii soum, Umnugobi Province 46040, Mongolia","active":true,"usgs":false}],"preferred":false,"id":949868,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Bhat, Mohd Younus","contributorId":362041,"corporation":false,"usgs":false,"family":"Bhat","given":"Mohd","middleInitial":"Younus","affiliations":[{"id":86434,"text":"Pondicherry University, School of Physical, Chemical & Applied Sciences, Pondicherry 605014, India","active":true,"usgs":false}],"preferred":false,"id":949869,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Congo, Tara","contributorId":330818,"corporation":false,"usgs":false,"family":"Congo","given":"Tara","email":"","affiliations":[{"id":79031,"text":"The University of Queensland, Australia","active":true,"usgs":false}],"preferred":false,"id":949870,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Donohoe, Bryon S.","contributorId":330820,"corporation":false,"usgs":false,"family":"Donohoe","given":"Bryon","email":"","middleInitial":"S.","affiliations":[{"id":79034,"text":"National Renewable Energy Laboratory, USA","active":true,"usgs":false}],"preferred":false,"id":949871,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Ehinola, Olugbenga","contributorId":362042,"corporation":false,"usgs":false,"family":"Ehinola","given":"Olugbenga","affiliations":[{"id":86435,"text":"University of Ibadan, Department of Geology, Ibadan, 200284, Oyo State, Nigeria","active":true,"usgs":false}],"preferred":false,"id":949872,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Flores, Deolinda","contributorId":330822,"corporation":false,"usgs":false,"family":"Flores","given":"Deolinda","affiliations":[{"id":79035,"text":"Instituto de Ciências da Terra, University of Porto, Portugal","active":true,"usgs":false}],"preferred":false,"id":949873,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Fonseca, Carolina","contributorId":362043,"corporation":false,"usgs":false,"family":"Fonseca","given":"Carolina","affiliations":[{"id":86436,"text":"Universidade Federal do Rio de Janeiro, Departamento de Geologia, Av. Athos da Silveira, 274, Rio de Janeiro, 21.949-900, Brazil","active":true,"usgs":false}],"preferred":false,"id":949874,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Ghosh, Santanu","contributorId":330824,"corporation":false,"usgs":false,"family":"Ghosh","given":"Santanu","email":"","affiliations":[{"id":79037,"text":"Mizoram University, India","active":true,"usgs":false}],"preferred":false,"id":949875,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Gonçalves, Paula","contributorId":362044,"corporation":false,"usgs":false,"family":"Gonçalves","given":"Paula","affiliations":[{"id":86436,"text":"Universidade Federal do Rio de Janeiro, Departamento de Geologia, Av. Athos da Silveira, 274, Rio de Janeiro, 21.949-900, Brazil","active":true,"usgs":false}],"preferred":false,"id":949876,"contributorType":{"id":1,"text":"Authors"},"rank":19},{"text":"Hackley, Paul C. 0000-0002-5957-2551 phackley@usgs.gov","orcid":"https://orcid.org/0000-0002-5957-2551","contributorId":592,"corporation":false,"usgs":true,"family":"Hackley","given":"Paul","email":"phackley@usgs.gov","middleInitial":"C.","affiliations":[{"id":255,"text":"Energy Resources Program","active":true,"usgs":true},{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":949877,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Hower, James C. 0000-0003-4694-2776","orcid":"https://orcid.org/0000-0003-4694-2776","contributorId":215373,"corporation":false,"usgs":false,"family":"Hower","given":"James","middleInitial":"C.","affiliations":[{"id":39231,"text":"University of Kentucky Center for Applied Energy Research","active":true,"usgs":false}],"preferred":false,"id":949878,"contributorType":{"id":1,"text":"Authors"},"rank":21},{"text":"Jargal, Luvsanchultem","contributorId":362045,"corporation":false,"usgs":false,"family":"Jargal","given":"Luvsanchultem","affiliations":[{"id":86437,"text":"National University of Mongolia, Department of Geology and Geophysics, Sukhbaatar District, Ulaanbaatar, 14201, Mongolia","active":true,"usgs":false}],"preferred":false,"id":949879,"contributorType":{"id":1,"text":"Authors"},"rank":22},{"text":"Johnston, Michelle Nicole 0009-0004-8882-6313","orcid":"https://orcid.org/0009-0004-8882-6313","contributorId":362046,"corporation":false,"usgs":true,"family":"Johnston","given":"Michelle","middleInitial":"Nicole","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":949880,"contributorType":{"id":1,"text":"Authors"},"rank":23},{"text":"Kalaitzidis, Stavros","contributorId":330828,"corporation":false,"usgs":false,"family":"Kalaitzidis","given":"Stavros","affiliations":[{"id":79039,"text":"University of Patras, Greece","active":true,"usgs":false}],"preferred":false,"id":949881,"contributorType":{"id":1,"text":"Authors"},"rank":24},{"text":"Kędzior, Sławomir","contributorId":362047,"corporation":false,"usgs":false,"family":"Kędzior","given":"Sławomir","affiliations":[{"id":86438,"text":"University of Silesia in Katowice, Faculty of Natural Sciences, Będzińska 60 St., 41-200 Sosnowiec, Poland","active":true,"usgs":false}],"preferred":false,"id":949882,"contributorType":{"id":1,"text":"Authors"},"rank":25},{"text":"Knowles, Wayne","contributorId":330830,"corporation":false,"usgs":false,"family":"Knowles","given":"Wayne","affiliations":[{"id":79040,"text":"Stratum Reservior, USA","active":true,"usgs":false}],"preferred":false,"id":949883,"contributorType":{"id":1,"text":"Authors"},"rank":26},{"text":"Kumar, Susheel","contributorId":362131,"corporation":false,"usgs":false,"family":"Kumar","given":"Susheel","affiliations":[],"preferred":false,"id":949922,"contributorType":{"id":1,"text":"Authors"},"rank":27},{"text":"Kus, Jolanta","contributorId":330831,"corporation":false,"usgs":false,"family":"Kus","given":"Jolanta","affiliations":[{"id":79041,"text":"Federal Institute for Geosciences and Natural Resources, Germany","active":true,"usgs":false}],"preferred":false,"id":949884,"contributorType":{"id":1,"text":"Authors"},"rank":28},{"text":"Lis, Grzegorz","contributorId":330833,"corporation":false,"usgs":false,"family":"Lis","given":"Grzegorz","email":"","affiliations":[{"id":64460,"text":"University of Wroclaw, Poland","active":true,"usgs":false}],"preferred":false,"id":949885,"contributorType":{"id":1,"text":"Authors"},"rank":29},{"text":"Lis, Kacper","contributorId":330832,"corporation":false,"usgs":false,"family":"Lis","given":"Kacper","email":"","affiliations":[{"id":64460,"text":"University of Wroclaw, Poland","active":true,"usgs":false}],"preferred":false,"id":949886,"contributorType":{"id":1,"text":"Authors"},"rank":30},{"text":"Liu, Bei","contributorId":330834,"corporation":false,"usgs":false,"family":"Liu","given":"Bei","email":"","affiliations":[{"id":79042,"text":"China University of Geosciences, Wuhan, China","active":true,"usgs":false}],"preferred":false,"id":949887,"contributorType":{"id":1,"text":"Authors"},"rank":31},{"text":"Liu, Bangjun","contributorId":362048,"corporation":false,"usgs":false,"family":"Liu","given":"Bangjun","affiliations":[{"id":86439,"text":"Hebei University of Engineering, School of Earth Science and Engineering, Taiji Road 19, Handan 056038, P.R. 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,{"id":70267917,"text":"70267917 - 2025 - Trends in richness and occupancy of Ugandan birds and relation to local tree cover","interactions":[],"lastModifiedDate":"2025-06-06T14:37:59.275323","indexId":"70267917","displayToPublicDate":"2025-06-04T09:28:49","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":670,"text":"African Journal of Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Trends in richness and occupancy of Ugandan birds and relation to local tree cover","docAbstract":"<p><span>Changes in vegetation cover are occurring across sub-Saharan Africa and can have substantial effects on ecological communities, but limited data make understanding status and trends difficult for many taxa. We surveyed birds for several decades across Uganda using point counts. Using time-to-detection analysis in a trait-informed Bayesian multi-species occupancy framework, we model bird species richness as a function of year and local tree cover across 28 sites. We test for trends in richness and occupancy, and for the relationship between these and local and landscape-scale tree cover. Species richness increased at 75% of sites through the study period, and generalist bird species were most likely to be increasing in occupancy. Forest specialist bird species, and to a lesser extent generalists, responded positively to tree cover. Woody cover is changing across Uganda, with declines most pronounced in areas with the highest tree cover. This is likely to be causing declines in forest specialist species while favouring generalists. When tree cover decline is caused by conversion to croplands, rather than transitions to grasslands, grassland specialists are unlikely to benefit. Effects of climate and land use change and population pressure are likely to continue to alter woody plant cover and thus affect East African bird communities.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/aje.70058","usgsCitation":"Burner, R.C., Adams, E.M., Pomeroy, D., Tushabe, H., Kibuule, M., Rostad, L., Venter, Z., and Sheil, D., 2025, Trends in richness and occupancy of Ugandan birds and relation to local tree cover: African Journal of Ecology, v. 63, no. 4, e70058, 21 p., https://doi.org/10.1111/aje.70058.","productDescription":"e70058, 21 p.","ipdsId":"IP-175842","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":490660,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/aje.70058","text":"Publisher Index Page"},{"id":490399,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P1SPBYBF","text":"USGS data release","linkHelpText":"Uganda bird trends"},{"id":490194,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Uganda","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"Polygon\",\"coordinates\":[[[31.86617,-1.02736],[30.76986,-1.01455],[30.4191,-1.13466],[29.82152,-1.44332],[29.57947,-1.34131],[29.58784,-0.58741],[29.8195,-0.2053],[29.87578,0.59738],[30.08615,1.06231],[30.46851,1.58381],[30.85267,1.8494],[31.17415,2.20447],[30.77332,2.33989],[30.83385,3.50917],[31.24556,3.7819],[31.88145,3.55827],[32.68642,3.79232],[33.39,3.79],[34.005,4.24988],[34.47913,3.5556],[34.59607,3.05374],[35.03599,1.90584],[34.6721,1.17694],[34.18,0.515],[33.89357,0.10981],[33.90371,-0.95],[31.86617,-1.02736]]]},\"properties\":{\"name\":\"Uganda\"}}]}","volume":"63","issue":"4","noUsgsAuthors":false,"publicationDate":"2025-06-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Burner, Ryan C. 0000-0002-7314-9506","orcid":"https://orcid.org/0000-0002-7314-9506","contributorId":304152,"corporation":false,"usgs":true,"family":"Burner","given":"Ryan","email":"","middleInitial":"C.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":939320,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Adams, Evan M.","contributorId":139994,"corporation":false,"usgs":false,"family":"Adams","given":"Evan","email":"","middleInitial":"M.","affiliations":[{"id":6928,"text":"BioDiversity Research Institute, Gorham, ME 04038","active":true,"usgs":false}],"preferred":false,"id":939321,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Pomeroy, Derek","contributorId":356400,"corporation":false,"usgs":false,"family":"Pomeroy","given":"Derek","affiliations":[{"id":84992,"text":"Department of Environment Management, Makerere University, Kampala, Uganda","active":true,"usgs":false}],"preferred":false,"id":939322,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Tushabe, Herbert","contributorId":356401,"corporation":false,"usgs":false,"family":"Tushabe","given":"Herbert","affiliations":[{"id":84992,"text":"Department of Environment Management, Makerere University, Kampala, Uganda","active":true,"usgs":false}],"preferred":false,"id":939323,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Kibuule, Micheal","contributorId":356402,"corporation":false,"usgs":false,"family":"Kibuule","given":"Micheal","affiliations":[{"id":84995,"text":"NatureUganda","active":true,"usgs":false}],"preferred":false,"id":939324,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Rostad, Lars Jørgen","contributorId":356403,"corporation":false,"usgs":false,"family":"Rostad","given":"Lars Jørgen","affiliations":[{"id":84996,"text":"Norconsult AS","active":true,"usgs":false}],"preferred":false,"id":939325,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Venter, Zander S.","contributorId":356404,"corporation":false,"usgs":false,"family":"Venter","given":"Zander S.","affiliations":[{"id":84997,"text":"wegian Institute for Nature Research - NINA","active":true,"usgs":false}],"preferred":false,"id":939326,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Sheil, Douglas","contributorId":356405,"corporation":false,"usgs":false,"family":"Sheil","given":"Douglas","affiliations":[{"id":84998,"text":"Forest Ecology and Forest Management Group, Wageningen University and Research, Wageningen, Netherlands","active":true,"usgs":false}],"preferred":false,"id":939327,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70267972,"text":"70267972 - 2025 - Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer (Odocoileus virginianus) populations","interactions":[],"lastModifiedDate":"2025-07-10T14:52:39.543071","indexId":"70267972","displayToPublicDate":"2025-06-04T09:28:31","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3849,"text":"Transboundary and Emerging Diseases","active":true,"publicationSubtype":{"id":10}},"title":"Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer (Odocoileus virginianus) populations","docAbstract":"<p><span>The establishment of a reservoir species for zoonotic diseases is concerning for both animal and human health. Severe acute respiratory syndrome coronavirus (SARS-CoV)-2, the coronavirus responsible for the COVID-19 pandemic, has been detected in white-tailed deer (</span><i>Odocoileus virginianus</i><span>) in the United States. Since its initial detection, various studies have documented circulation and evolution of SARS-CoV-2 in deer, with human cases suspected of spill-back from infectious deer. A priority for mitigating SARS-CoV-2 outbreaks in deer populations is determining the contribution of direct (via aerosols and physical contact) and indirect (via contaminated objects and media) transmission pathways. We expanded existing epidemiological models founded on direct transmission pathways to include three indirect transmission pathways of infection for simulated deer populations, including contaminated water, food waste, and feed piles. Despite lower infection probabilities and transmission hazards (measured by force-of-infection (FOI)) posed solely by these indirect pathways compared to direct transmission pathways, the addition of indirect transmission pathways increased FOI, which had ramifications for the severity of SARS-CoV-2 outbreaks in simulated deer populations, particularly in populations with low degrees of spread between deer (measured by basic reproductive number;&nbsp;</span><i>R</i><sub>0</sub><span>). We used contact rate models to estimate SARS-CoV-2 spread across deer range in the United States and identified widespread potential for indirect transmission to increase the severity of outbreaks in low-density deer populations. These results indicate that indirect transmission pathways need to be considered in the management of white-tailed deer as a reservoir species for SARS-CoV-2.</span></p>","language":"English","publisher":"Wiley","doi":"10.1155/tbed/1352911","usgsCitation":"Rosenblatt, E., Cook, J.D., DiRenzo, G.V., Campbell Grant, E.H., Runge, M.C., and Mosher, B., 2025, Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer (Odocoileus virginianus) populations: Transboundary and Emerging Diseases, v. 2025, 352911, 13 p., https://doi.org/10.1155/tbed/1352911.","productDescription":"352911, 13 p.","ipdsId":"IP-166277","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true},{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":490309,"rank":2,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":490627,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1155/tbed/1352911","text":"Publisher Index Page"},{"id":491310,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P19KKRVV","text":"USGS data release","linkHelpText":"Code for Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer Odocoileus virginianus populations"}],"volume":"2025","noUsgsAuthors":false,"publicationDate":"2025-06-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Rosenblatt, Elias","contributorId":276324,"corporation":false,"usgs":false,"family":"Rosenblatt","given":"Elias","affiliations":[{"id":13253,"text":"University of Vermont","active":true,"usgs":false}],"preferred":false,"id":939832,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Cook, Jonathan D. 0000-0001-7000-8727","orcid":"https://orcid.org/0000-0001-7000-8727","contributorId":291411,"corporation":false,"usgs":true,"family":"Cook","given":"Jonathan","middleInitial":"D.","affiliations":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":939833,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"DiRenzo, Graziella Vittoria 0000-0001-5264-4762","orcid":"https://orcid.org/0000-0001-5264-4762","contributorId":243404,"corporation":false,"usgs":true,"family":"DiRenzo","given":"Graziella","email":"","middleInitial":"Vittoria","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":939834,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Campbell Grant, Evan H. 0000-0003-4401-6496 ehgrant@usgs.gov","orcid":"https://orcid.org/0000-0003-4401-6496","contributorId":150443,"corporation":false,"usgs":true,"family":"Campbell Grant","given":"Evan","email":"ehgrant@usgs.gov","middleInitial":"H.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":939835,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Runge, Michael C. 0000-0002-8081-536X mrunge@usgs.gov","orcid":"https://orcid.org/0000-0002-8081-536X","contributorId":3358,"corporation":false,"usgs":true,"family":"Runge","given":"Michael","email":"mrunge@usgs.gov","middleInitial":"C.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":939836,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Mosher, Brittany 0000-0002-8458-9056","orcid":"https://orcid.org/0000-0002-8458-9056","contributorId":216035,"corporation":false,"usgs":true,"family":"Mosher","given":"Brittany","email":"","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":939837,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70268007,"text":"70268007 - 2025 - Observing northern high-latitude river systems to understand changes in a warming Arctic","interactions":[],"lastModifiedDate":"2025-06-11T14:08:41.105155","indexId":"70268007","displayToPublicDate":"2025-06-04T09:03:44","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5763,"text":"Current Climate Change Reports","active":true,"publicationSubtype":{"id":10}},"title":"Observing northern high-latitude river systems to understand changes in a warming Arctic","docAbstract":"<h3 class=\"c-article__sub-heading\" data-test=\"abstract-sub-heading\">Purpose of Review</h3><p>Streams and rivers are undergoing rapid change as the Arctic warms and thaws. We review recent observations in Arctic stream systems to identify ubiquitous changes and the most useful tools for observing change and exploring the underlying processes.</p><h3 class=\"c-article__sub-heading\" data-test=\"abstract-sub-heading\">Recent Findings</h3><p>Recent literature indicates increasingly significant trends in river hydrology and chemistry due to persistent warming in the Arctic and longer observational records for analysis. However, regional differences in the magnitude and direction of these trends persist. We also observe thresholds in ground thaw and surface–groundwater interactions that can impact river hydrology and chemistry.</p><h3 class=\"c-article__sub-heading\" data-test=\"abstract-sub-heading\">Summary</h3><p>Warming and thaw are occurring rapidly at high latitudes, resulting in increasing, yet variable responses in stream systems across regions and scales. These differences highlight the need for long-term records and an interdisciplinary approach to explain trends and predict future states. Stream systems respond to multiple landscape changes related to hydrology (changing precipitation and subsurface flow), geology (ground thaw dynamics), and ecology (vegetation change).</p>","language":"English","publisher":"Springer Nature","doi":"10.1007/s40641-025-00202-5","usgsCitation":"Koch, J.C., and O’Donnell, J.A., 2025, Observing northern high-latitude river systems to understand changes in a warming Arctic: Current Climate Change Reports, v. 11, 5, 11 p., https://doi.org/10.1007/s40641-025-00202-5.","productDescription":"5, 11 p.","ipdsId":"IP-173848","costCenters":[{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true}],"links":[{"id":490673,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1007/s40641-025-00202-5","text":"Publisher Index Page"},{"id":490362,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"11","noUsgsAuthors":false,"publicationDate":"2025-06-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Koch, Joshua C. 0000-0001-7180-6982 jkoch@usgs.gov","orcid":"https://orcid.org/0000-0001-7180-6982","contributorId":202532,"corporation":false,"usgs":true,"family":"Koch","given":"Joshua","email":"jkoch@usgs.gov","middleInitial":"C.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":120,"text":"Alaska Science Center Water","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":939950,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"O’Donnell, J. A.","contributorId":195376,"corporation":false,"usgs":false,"family":"O’Donnell","given":"J.","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":939951,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70269782,"text":"70269782 - 2025 - Two new species of Henneguya Thélohan, 1892 (Cnidaria: Bivalvulida: Myxobolidae) infecting gill of blue catfish, Ictalurus furcatus (Rafinesque) (Siluriformes: Ictaluridae) from the Tallapoosa River and Chesapeake Bay tributaries","interactions":[],"lastModifiedDate":"2025-08-01T13:46:08.160355","indexId":"70269782","displayToPublicDate":"2025-06-04T08:40:10","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2414,"text":"Journal of Parasitology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Two new species of <i>Henneguya</i> Thélohan, 1892 (Cnidaria: Bivalvulida: Myxobolidae) infecting gill of blue catfish, <i>Ictalurus furcatus</i> (Rafinesque) (Siluriformes: Ictaluridae) from the Tallapoosa River and Chesapeake Bay tributaries","title":"Two new species of Henneguya Thélohan, 1892 (Cnidaria: Bivalvulida: Myxobolidae) infecting gill of blue catfish, Ictalurus furcatus (Rafinesque) (Siluriformes: Ictaluridae) from the Tallapoosa River and Chesapeake Bay tributaries","docAbstract":"<p><span>We herein describe 2 new species of&nbsp;</span><i>Henneguya</i><span>&nbsp;Thélohan, 1892 (Bivalvulida: Myxobolidae),&nbsp;</span><i>Henneguya auburnensis</i><span>&nbsp;Ksepka and Bullard n. sp. and&nbsp;</span><i>Henneguya chesapeakensis</i><span>&nbsp;Ksepka, Walsh, and Bullard n. sp., infecting the inter-lamellar epithelium of cultured blue catfish (</span><i>Ictalurus furcatus</i><span>&nbsp;[Valenciennes, 1840] [Siluriformes: Ictaluridae]) from Saugahatchee Creek (Tallapoosa River; Auburn, Alabama) and the inter-lamellar epithelium of invasive blue catfish captured in Chesapeake Bay tributaries, respectively.&nbsp;</span><i>Henneguya auburnensis</i><span>&nbsp;resembles&nbsp;</span><i>Henneguya mississippiensis</i><span>&nbsp;</span>Rosser, Griffin, Quiniou, Khoo, Greenway, Wise, and Pote, 2015<span>, and&nbsp;</span><i>Henneguya sutherlandi</i><span>&nbsp;</span>Griffin, Pote, Wise, Greenway, Mauel, and Camus, 2008<span>, which both infect channel catfish (</span><i>Ictalurus punctatus</i><span>&nbsp;[Rafinesque, 1818] [Siluriformes: Ictaluridae]) in Mississippi, but differs from these species by having more polar tubule coils (10–12 vs. 8–9 and 6, respectively).&nbsp;</span><i>Henneguya chesapeakensis</i><span>&nbsp;resembles&nbsp;</span><i>Henneguya longicauda</i><span>&nbsp;</span>Minchew, 1977<span>, which infects channel catfish in Mississippi, but differs from this species by having shorter polar capsules (6.0–7.0 vs. 7.0–9.0). A phylogenetic analysis of the small subunit (SSU) rDNA recovered ictalurid-infecting&nbsp;</span><i>Henneguya</i><span>&nbsp;spp. as monophyletic, with&nbsp;</span><i>H. auburnensis</i><span>&nbsp;sister to a clade of&nbsp;</span><i>Henneguya</i><span>&nbsp;spp. that, except for&nbsp;</span><i>H. chesapeakensis</i><span>, infect the gill or adipose fin of channel catfish.&nbsp;</span><i>Henneguya chesapeakensis</i><span>&nbsp;was recovered sister to&nbsp;</span><i>Henneguya ictaluri</i><span>&nbsp;</span>Pote, Hanson, and Shivaji, 2000<span>. Histological sections of infected gill filaments revealed that the plasmodia of both new species developed within the inter-lamellar epithelium. The new species comprise the second and third species of&nbsp;</span><i>Henneguya</i><span>&nbsp;reported from blue catfish.</span></p>","language":"English","publisher":"BioOne","doi":"10.1645/24-141","usgsCitation":"Ksepka, S., Walsh, H.L., Densmore, C., Truong, T., and Bullard, S., 2025, Two new species of Henneguya Thélohan, 1892 (Cnidaria: Bivalvulida: Myxobolidae) infecting gill of blue catfish, Ictalurus furcatus (Rafinesque) (Siluriformes: Ictaluridae) from the Tallapoosa River and Chesapeake Bay tributaries: Journal of Parasitology, v. 111, no. 3, p. 287-297, https://doi.org/10.1645/24-141.","productDescription":"11 p.","startPage":"287","endPage":"297","ipdsId":"IP-172140","costCenters":[{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":493336,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"111","issue":"3","noUsgsAuthors":false,"publicationDate":"2025-06-04","publicationStatus":"PW","contributors":{"authors":[{"text":"Ksepka, Steven","contributorId":358956,"corporation":false,"usgs":false,"family":"Ksepka","given":"Steven","affiliations":[{"id":13360,"text":"Auburn University","active":true,"usgs":false}],"preferred":false,"id":944615,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Walsh, Heather L. 0000-0001-6392-4604 hwalsh@usgs.gov","orcid":"https://orcid.org/0000-0001-6392-4604","contributorId":4696,"corporation":false,"usgs":true,"family":"Walsh","given":"Heather","email":"hwalsh@usgs.gov","middleInitial":"L.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":944616,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Densmore, Christine","contributorId":343448,"corporation":false,"usgs":false,"family":"Densmore","given":"Christine","affiliations":[{"id":36188,"text":"U.S. Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":944617,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Truong, Triet","contributorId":358958,"corporation":false,"usgs":false,"family":"Truong","given":"Triet","affiliations":[{"id":13360,"text":"Auburn University","active":true,"usgs":false}],"preferred":false,"id":944618,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bullard, Stephen","contributorId":358961,"corporation":false,"usgs":false,"family":"Bullard","given":"Stephen","affiliations":[{"id":85725,"text":"Auburn University and North-West University South Africa","active":true,"usgs":false}],"preferred":false,"id":944619,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70268931,"text":"70268931 - 2025 - Doe diligence: A regional analysis of antlerless deer harvest regulations in the Midwestern United States of America.","interactions":[],"lastModifiedDate":"2025-07-11T15:43:07.67574","indexId":"70268931","displayToPublicDate":"2025-06-04T08:34:30","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"Doe diligence: A regional analysis of antlerless deer harvest regulations in the Midwestern United States of America.","docAbstract":"<p><span>Wildlife management in the United States of America (US) is primarily delegated to the individual states wherein state wildlife agencies manage wildlife populations to achieve multiple and sometimes conflicting objectives. White-tailed deer (</span><i>Odocoileus virginianus</i><span>) are an important species in the Midwestern US whose populations are primarily managed through recreational hunting. Managers aim to adjust populations by altering the harvest of antlerless (usually female) animals by changing the number of harvest permits available, hunting season lengths, or applying incentive programs like earn-a-buck, where a hunter must harvest an antlerless deer before they may harvest an antlered deer. We estimated the effect on antlerless deer harvest from changes in these regulations and changes in the number of licensed hunters across eight states in the Midwest. We used a Bayesian hierarchical model to estimate individual state and regional (i.e., across all states) effects. We found that increasing antlerless harvest permits increased antlerless harvest; however, this effect plateaued as the number of available permits increased. Providing unlimited harvest permits increased harvest, but the same increases were achieved by minimally increasing the number of limited harvest permits. Increasing the length of hunting season had a generally positive effect on antlerless harvest but the effect was non-linear and state dependent. The earn-a-buck incentive program resulted in the largest estimated increase in harvest. Finally, the number of licensed deer hunters in a state had a strong positive effect on the number of antlerless deer harvested. Our findings show that commonly applied changes in harvest regulations have a weak effect on the number of antlerless deer harvested, highlighting the challenges facing deer managers in the Midwestern US.</span></p>","language":"English","publisher":"PLOS","doi":"10.1371/journal.pone.0324708","usgsCitation":"Draper, J., Brandell, E., Isabelle, J., Jacques, C., McCoy, C., Michel, E., Storm, D., Ott-Conn, C., Wojcik, B., Turner, W.C., and Walsh, D.P., 2025, Doe diligence: A regional analysis of antlerless deer harvest regulations in the Midwestern United States of America.: PLoS ONE, v. 20, no. 6, e0324708, 16 p., https://doi.org/10.1371/journal.pone.0324708.","productDescription":"e0324708, 16 p.","ipdsId":"IP-174116","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":492480,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0324708","text":"Publisher Index Page"},{"id":492150,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Illinois, Indiana, Iowa, Michigan, Minnesota, Missouri, Ohio, Wisconsin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -97.2483526766203,\n              49.0021108384457\n            ],\n            [\n              -96.63892778609701,\n              42.76574577169308\n            ],\n            [\n              -94.09697619566731,\n              36.4357087444167\n            ],\n            [\n              -88.4379536613395,\n              36.52577647267226\n            ],\n            [\n              -88.05601824922596,\n              37.49884018863901\n            ],\n            [\n              -84.53448990598228,\n              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P.","affiliations":[{"id":83274,"text":"University of Wisconsin–Madison","active":true,"usgs":false}],"preferred":false,"id":942640,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Brandell, Ellen E.","contributorId":357807,"corporation":false,"usgs":false,"family":"Brandell","given":"Ellen E.","affiliations":[{"id":39887,"text":"Colorado Parks and Wildlife","active":true,"usgs":false}],"preferred":false,"id":942641,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Isabelle, Jason","contributorId":357808,"corporation":false,"usgs":false,"family":"Isabelle","given":"Jason","affiliations":[{"id":16971,"text":"Missouri Department of Conservation","active":true,"usgs":false}],"preferred":false,"id":942642,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Jacques, Chris","contributorId":357809,"corporation":false,"usgs":false,"family":"Jacques","given":"Chris","affiliations":[{"id":33955,"text":"Illinois Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":942643,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"McCoy, Clint","contributorId":357810,"corporation":false,"usgs":false,"family":"McCoy","given":"Clint","affiliations":[{"id":16232,"text":"Ohio Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":942644,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Michel, Eric","contributorId":357811,"corporation":false,"usgs":false,"family":"Michel","given":"Eric","affiliations":[{"id":17848,"text":"Mississippi State University","active":true,"usgs":false}],"preferred":false,"id":942645,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Storm, Daniel J.","contributorId":357812,"corporation":false,"usgs":false,"family":"Storm","given":"Daniel J.","affiliations":[{"id":6913,"text":"Wisconsin Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":942646,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Ott-Conn, Caitlin","contributorId":357813,"corporation":false,"usgs":false,"family":"Ott-Conn","given":"Caitlin","affiliations":[{"id":36986,"text":"Michigan Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":942647,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Wojcik, Beth","contributorId":357814,"corporation":false,"usgs":false,"family":"Wojcik","given":"Beth","affiliations":[{"id":6913,"text":"Wisconsin Department of Natural Resources","active":true,"usgs":false}],"preferred":false,"id":942648,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Turner, Wendy Christine 0000-0002-0302-1646","orcid":"https://orcid.org/0000-0002-0302-1646","contributorId":287053,"corporation":false,"usgs":true,"family":"Turner","given":"Wendy","email":"","middleInitial":"Christine","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":942649,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Walsh, Daniel P. 0000-0002-7772-2445","orcid":"https://orcid.org/0000-0002-7772-2445","contributorId":219539,"corporation":false,"usgs":true,"family":"Walsh","given":"Daniel","email":"","middleInitial":"P.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":942650,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70267834,"text":"gip253 - 2025 - U.S. Geological Survey monitoring milestones—Rio Grande at Embudo, NM (08279500)","interactions":[],"lastModifiedDate":"2025-09-02T17:05:28.861385","indexId":"gip253","displayToPublicDate":"2025-06-03T12:13:10","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":315,"text":"General Information Product","code":"GIP","onlineIssn":"2332-354X","printIssn":"2332-3531","active":false,"publicationSubtype":{"id":5}},"seriesNumber":"253","displayTitle":"U.S. Geological Survey Monitoring Milestones—Rio Grande at Embudo, NM (08279500)","title":"U.S. Geological Survey monitoring milestones—Rio Grande at Embudo, NM (08279500)","docAbstract":"<p><span>Located at the site of the first U.S. Geological Survey (USGS) training camp for hydrographers, the Rio Grande at Embudo, NM (08279500), streamgage has been collecting water data since January 1889. The development and adaptation of equipment and techniques at this location became the foundation of USGS streamgaging methods.</span></p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/gip253","usgsCitation":"Bunch, C.E. and Riskin, M.L., 2025, U.S. Geological Survey monitoring milestones—Rio Grande at Embudo, NM (08279500): U.S. Geological Survey General Information Product 253, https://doi.org/10.3133/gip253.","productDescription":"1 p.","onlineOnly":"Y","ipdsId":"IP-173786","costCenters":[{"id":37786,"text":"WMA - Observing Systems Division","active":true,"usgs":true}],"links":[{"id":489509,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/gip/253/gip253.pdf","text":"Report","size":"719 KB","linkFileType":{"id":1,"text":"pdf"},"description":"GIP 253"},{"id":489508,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/gip/253/coverthb.jpg"}],"country":"United States","state":"New Mexcio","city":"Embudo","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -105.95294116853054,\n              36.21108389143059\n            ],\n            [\n              -105.96424309566731,\n              36.209667097572975\n            ],\n            [\n              -105.96925553227872,\n              36.201629529647946\n            ],\n            [\n              -105.95884754288156,\n              36.204643715877324\n            ],\n            [\n              -105.95294116853054,\n              36.21108389143059\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:waternetworks@usgs.gov\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"mailto:waternetworks@usgs.gov\">National Streamgage Networks Coordinator</a><br><a href=\"https://www.usgs.gov/mission-areas/water-resources/observing-systems-division\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/mission-areas/water-resources/observing-systems-division\">Observing Systems Division</a><br>Water Mission Area<br>U.S. Geological Survey<br>12201 Sunrise Valley Drive<br>Reston, VA 20192</p>","publishedDate":"2025-06-03","noUsgsAuthors":false,"publicationDate":"2025-06-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Bunch, Claire E. 0000-0002-1360-8598 cebunch@usgs.gov","orcid":"https://orcid.org/0000-0002-1360-8598","contributorId":150240,"corporation":false,"usgs":true,"family":"Bunch","given":"Claire E.","email":"cebunch@usgs.gov","affiliations":[{"id":128,"text":"Arizona Water Science Center","active":true,"usgs":true}],"preferred":false,"id":939084,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Riskin, Melissa L. 0000-0001-6499-3775 mriskin@usgs.gov","orcid":"https://orcid.org/0000-0001-6499-3775","contributorId":654,"corporation":false,"usgs":true,"family":"Riskin","given":"Melissa","email":"mriskin@usgs.gov","middleInitial":"L.","affiliations":[{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true},{"id":37786,"text":"WMA - Observing Systems Division","active":true,"usgs":true},{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true}],"preferred":true,"id":939085,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70267867,"text":"70267867 - 2025 - Assessing causes and consequences of winter surface water dynamics in California’s Central Valley using satellite remote sensing","interactions":[],"lastModifiedDate":"2025-06-23T15:26:48.939339","indexId":"70267867","displayToPublicDate":"2025-06-03T10:23:46","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2289,"text":"Journal of Flood Risk Management","active":true,"publicationSubtype":{"id":10}},"title":"Assessing causes and consequences of winter surface water dynamics in California’s Central Valley using satellite remote sensing","docAbstract":"<p><span>California's Central Valley is increasingly vulnerable to winter floods. A comprehensive spatial baseline of flood extents is critical for inundation analyses that can enhance future flood predictions, but cloud cover has prevented the regular observation of surface water extents with optical satellite imagery. In this study, we leveraged the daily resolution of Moderate Resolution Imaging Spectroradiometer (MODIS) satellite data to create a continuous series of monthly Dynamic Surface Water Extent (DSWEmod) images across the Central Valley from January 2003 to January 2023. We used the timeseries to assess the climatic driving forces of winter (Oct–April) surface water variability at sub-basin and pixel scales. At the sub-basin scale, we evaluated the influences of winter precipitation, occurrence of atmospheric rivers, and antecedent soil moisture on monthly surface water extents and found that the greatest correspondence occurs in mid-winter (Dec–Feb); in contrast, non-precipitation drivers such as water management play a stronger role in autumn and spring. The pixel-level analysis identified the probabilities of precipitation-driven surface water occurrences in the Sacramento basin are highest along rivers, conveyance channels, and floodways, with higher probabilities under wetter antecedent soil moisture conditions. Precipitation-driven surface water occurrences are also common in leveed areas and outside flood boundaries designated by state and federal agencies where exposure of structures to inundation was larger in terms of their value. Finally, areas with more frequent precipitation-driven flooding have poor recharge potential but are commonly within 5 km of areas classified as having good potential. This study demonstrates a novel approach for exploring the utility of MODIS for understanding surface water dynamics in mid-winter, a period characterized by peak precipitation, flood risk, and surface water extent. This information can provide valuable insights for (1) assessing flood risks for infrastructure and populations, (2) identifying areas most suited to strategic water management investments to increase recharge, and (3) analyzing precipitation thresholds that trigger flooding to allow proactive water management strategies to minimize damage and maximize recharge.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/jfr3.70080","usgsCitation":"Albano, C.M., Soulard, C.E., Minor, B., Walker, J., Smith, B.W., Waller, E.K., Bartles, M., Corringham, T., O'Geen, A., Rohde, M., and Wein, A., 2025, Assessing causes and consequences of winter surface water dynamics in California’s Central Valley using satellite remote sensing: Journal of Flood Risk Management, v. 18, no. 2, e70080, 14 p., https://doi.org/10.1111/jfr3.70080.","productDescription":"e70080, 14 p.","ipdsId":"IP-174164","costCenters":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"links":[{"id":491009,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/jfr3.70080","text":"Publisher Index Page"},{"id":489692,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Central Valley","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -119.03203641824364,\n              35.32368399733505\n            ],\n            [\n              -119.03203641824362,\n              35.507911140217104\n            ],\n            [\n              -119.13339103993906,\n              36.39150716917348\n            ],\n            [\n              -120.38862904709285,\n              37.43251585047051\n        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M.","contributorId":169455,"corporation":false,"usgs":false,"family":"Albano","given":"Christine","email":"","middleInitial":"M.","affiliations":[{"id":12711,"text":"UC Davis","active":true,"usgs":false}],"preferred":false,"id":939189,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Soulard, Christopher E. 0000-0002-5777-9516 csoulard@usgs.gov","orcid":"https://orcid.org/0000-0002-5777-9516","contributorId":2642,"corporation":false,"usgs":true,"family":"Soulard","given":"Christopher","email":"csoulard@usgs.gov","middleInitial":"E.","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":939190,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Minor, Blake A.","contributorId":356359,"corporation":false,"usgs":false,"family":"Minor","given":"Blake A.","affiliations":[{"id":84971,"text":"Desert Research Institute, Division of Hydrologic Sciences, Reno, NV, USA","active":true,"usgs":false}],"preferred":false,"id":939191,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Walker, Jessica J. 0000-0002-3225-0317","orcid":"https://orcid.org/0000-0002-3225-0317","contributorId":207373,"corporation":false,"usgs":true,"family":"Walker","given":"Jessica J.","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":939192,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Smith, Britt Windsor 0000-0003-1556-2383","orcid":"https://orcid.org/0000-0003-1556-2383","contributorId":287481,"corporation":false,"usgs":true,"family":"Smith","given":"Britt","email":"","middleInitial":"Windsor","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":939193,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Waller, Eric K.","contributorId":317871,"corporation":false,"usgs":false,"family":"Waller","given":"Eric","email":"","middleInitial":"K.","affiliations":[{"id":69174,"text":"Contracted to USGS, Portland, Oregon, USA","active":true,"usgs":false}],"preferred":false,"id":939194,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Bartles, Michael D.","contributorId":356360,"corporation":false,"usgs":false,"family":"Bartles","given":"Michael D.","affiliations":[{"id":84972,"text":"Hydrologic Engineering Center, U.S. Army Corps of Engineers, Davis, CA, USA","active":true,"usgs":false}],"preferred":false,"id":939195,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Corringham, Tom","contributorId":356361,"corporation":false,"usgs":false,"family":"Corringham","given":"Tom","affiliations":[{"id":84973,"text":"Scripps Institution of Oceanography, University of California, La Jolla, CA, USA","active":true,"usgs":false}],"preferred":false,"id":939196,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"O'Geen, Anthony T.","contributorId":356362,"corporation":false,"usgs":false,"family":"O'Geen","given":"Anthony T.","affiliations":[{"id":84974,"text":"Department of Land, Air and Water Resources, University of California, Davis, CA, USA","active":true,"usgs":false}],"preferred":false,"id":939197,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Rohde, Melissa M.","contributorId":356363,"corporation":false,"usgs":false,"family":"Rohde","given":"Melissa M.","affiliations":[{"id":84975,"text":"Rohde Environmental Consulting LLC, Seattle, WA, USA","active":true,"usgs":false}],"preferred":false,"id":939198,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Wein, Anne 0000-0002-5516-3697 awein@usgs.gov","orcid":"https://orcid.org/0000-0002-5516-3697","contributorId":589,"corporation":false,"usgs":true,"family":"Wein","given":"Anne","email":"awein@usgs.gov","affiliations":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"preferred":true,"id":939199,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70268298,"text":"70268298 - 2025 - Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation","interactions":[],"lastModifiedDate":"2025-06-20T14:33:11.624655","indexId":"70268298","displayToPublicDate":"2025-06-03T09:30:42","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5263,"text":"Nature Ecology & Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation","docAbstract":"<p><span>Biodiversity and its associated genetic diversity are being lost at an unprecedented rate. Simultaneously, the distributions of flora, fauna, fungi, microbes and pathogens are rapidly changing. Novel technology can help to capture and record genetic diversity before it is lost and to measure population shifts and pathogen distributions. Here we report the rapid application of shotgun long-read environmental DNA (eDNA) analysis for non-invasive biodiversity, genetic diversity and pathogen assessments from air. We also compared air eDNA with water and soil eDNA. Coupling long-read sequencing with established cloud-based biodiversity pipelines enabled a 2-day turnaround from airborne sample collection to completed analysis by a single investigator. To determine the full utility of airborne eDNA, we also conducted a local bioinformatic analysis and deep short-read shotgun sequencing. From outdoor air eDNA alone, comprehensive genetic analysis was performed, including population genetics (phylogenetic placement) of a charismatic mammal (bobcat,&nbsp;</span><i>Lynx rufus</i><span>) and a venomous spider (golden silk orb weaver,&nbsp;</span><i>Trichonephila clavipes</i><span>), and haplotyping humans (</span><i>Homo sapiens</i><span>) from natural complex community settings, such as subtropical forests and temperate locations. The rich datasets also enabled deeper analysis of specific species and genomic regions of interest, including viral variant calling, human variant analysis and antimicrobial resistance gene surveillance from airborne DNA. Our results highlight the speed, versatility and specificity of pan-biodiversity monitoring via non-invasive eDNA sampling using current benchtop/portable and cloud-based approaches. Furthermore, they reveal the future feasibility of scaling down (equipment and temporally) these approaches for near real-time analysis. Together these approaches can enable rapid simultaneous detection of all life and its genetic diversity from air, water and sediment samples for unbiased non-targeted information-rich genomics-empowered (1) biodiversity monitoring, (2) population genetics, (3) pathogen and disease-vector genomic surveillance, (4) allergen and narcotic surveillance, (5) antimicrobial resistance surveillance and (6) bioprospecting.</span></p>","language":"English","publisher":"Nature","doi":"10.1038/s41559-025-02711-w","usgsCitation":"Nousias, O., Mccauley, M., Stammnitz, M., Farrell, J.A., Koda, S., Summers, V., Eastman, C., Duffy, F., Duffy, I., Whilde, J., and Duffy, D.J., 2025, Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation: Nature Ecology & Evolution, v. 9, no. 6, p. 1043-1060, https://doi.org/10.1038/s41559-025-02711-w.","productDescription":"18 p.","startPage":"1043","endPage":"1060","ipdsId":"IP-163401","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":491445,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1038/s41559-025-02711-w","text":"Publisher Index Page"},{"id":491022,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"9","issue":"6","noUsgsAuthors":false,"publicationDate":"2025-06-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Nousias, Orestis","contributorId":357082,"corporation":false,"usgs":false,"family":"Nousias","given":"Orestis","affiliations":[{"id":85330,"text":"Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA","active":true,"usgs":false}],"preferred":false,"id":940719,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mccauley, Mark 0000-0001-5347-6860","orcid":"https://orcid.org/0000-0001-5347-6860","contributorId":357083,"corporation":false,"usgs":true,"family":"Mccauley","given":"Mark","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":940720,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stammnitz, Maximilian R.","contributorId":357084,"corporation":false,"usgs":false,"family":"Stammnitz","given":"Maximilian R.","affiliations":[{"id":85333,"text":"Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain","active":true,"usgs":false}],"preferred":false,"id":940721,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Farrell, Jessica A.","contributorId":340572,"corporation":false,"usgs":false,"family":"Farrell","given":"Jessica","email":"","middleInitial":"A.","affiliations":[{"id":81632,"text":"Florida Atlantic University Harbor Branch Oceanographic Institute","active":true,"usgs":false}],"preferred":false,"id":940722,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Koda, Samantha A.","contributorId":357085,"corporation":false,"usgs":false,"family":"Koda","given":"Samantha A.","affiliations":[{"id":85334,"text":"The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital, University of Florida, St. Augustine, Florida 32080, USA","active":true,"usgs":false}],"preferred":false,"id":940723,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Summers, Victoria","contributorId":357086,"corporation":false,"usgs":false,"family":"Summers","given":"Victoria","affiliations":[{"id":85334,"text":"The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital, University of Florida, St. Augustine, Florida 32080, USA","active":true,"usgs":false}],"preferred":false,"id":940724,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Eastman, Catherine B.","contributorId":357087,"corporation":false,"usgs":false,"family":"Eastman","given":"Catherine B.","affiliations":[{"id":85335,"text":"The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital, University of Florida, St. Augustine, Florida 32080, USA.","active":true,"usgs":false}],"preferred":false,"id":940725,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Duffy, Fiona G.","contributorId":357088,"corporation":false,"usgs":false,"family":"Duffy","given":"Fiona G.","affiliations":[{"id":85334,"text":"The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital, University of Florida, St. Augustine, Florida 32080, USA","active":true,"usgs":false}],"preferred":false,"id":940726,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Duffy, Isabelle J.","contributorId":357089,"corporation":false,"usgs":false,"family":"Duffy","given":"Isabelle J.","affiliations":[{"id":85335,"text":"The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital, University of Florida, St. Augustine, Florida 32080, USA.","active":true,"usgs":false}],"preferred":false,"id":940727,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Whilde, Jenny","contributorId":357090,"corporation":false,"usgs":false,"family":"Whilde","given":"Jenny","affiliations":[{"id":85335,"text":"The Whitney Laboratory for Marine Bioscience and Sea Turtle Hospital, University of Florida, St. Augustine, Florida 32080, USA.","active":true,"usgs":false}],"preferred":false,"id":940728,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Duffy, David J.","contributorId":340574,"corporation":false,"usgs":false,"family":"Duffy","given":"David","email":"","middleInitial":"J.","affiliations":[{"id":36221,"text":"University of Florida","active":true,"usgs":false}],"preferred":false,"id":940729,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70269296,"text":"70269296 - 2025 - New insights reveal a temporally distinct two-stock genetic structure for Suwannee River Gulf sturgeon","interactions":[],"lastModifiedDate":"2025-07-18T14:34:21.386482","indexId":"70269296","displayToPublicDate":"2025-06-03T09:27:33","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1497,"text":"Endangered Species Research","active":true,"publicationSubtype":{"id":10}},"title":"New insights reveal a temporally distinct two-stock genetic structure for Suwannee River Gulf sturgeon","docAbstract":"<p><span>Understanding population genetic structure and patterns of gene flow is important for effective decision making and the preservation of genetic diversity, especially when managing protected species. Historically, Gulf sturgeon have been managed by river system, with early evidence supporting spatially distinct genetic structure across 7 natal populations. However, an increasing number of studies recognize that some rivers possess 2 genetically distinct sturgeon stocks residing within the same drainage. This, combined with evidence of both spring and fall spawning events within these drainages, suggests the distinction between these stocks may be temporally mediated, as similarly exhibited by the closely related Atlantic sturgeon. We analyzed the movements of 136 Gulf sturgeon within the Suwannee River, Florida, USA, between 2008 and 2022 using acoustic telemetry. We assessed migratory patterns and presence within known spawning habitat to categorize individuals as exhibiting either spring, fall, or unknown spawning behaviors each year. These individuals were also genotyped for 14 microsatellite loci to assign them to a genetic group. Our results reinforce previous work suggesting the presence of 2 genetically distinct stocks in the Suwannee River and indicate this genetic structure is driven by fidelity to temporally distinct spawning events, with one stock spawning in the spring and the other in fall. The delineation of these 2 sympatric stocks, historically managed as one, has management implications for the recovery of this species.</span></p>","language":"English","publisher":"Inter-Research Science Publisher","doi":"10.3354/esr01418","usgsCitation":"Price, M.E., Kreiser, B., and Randall, M.T., 2025, New insights reveal a temporally distinct two-stock genetic structure for Suwannee River Gulf sturgeon: Endangered Species Research, v. 57, p. 289-298, https://doi.org/10.3354/esr01418.","productDescription":"10 p.","startPage":"289","endPage":"298","ipdsId":"IP-167683","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":492863,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3354/esr01418","text":"Publisher Index Page"},{"id":492535,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Florida, Georgia","otherGeospatial":"Apalachicola River, Ochlockonee River, Suwannee River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -85.5,\n              31.2\n            ],\n            [\n              -85.5,\n              29\n            ],\n            [\n              -82,\n              29\n            ],\n            [\n              -82,\n              31.2\n            ],\n            [\n              -85.5,\n              31.2\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"57","noUsgsAuthors":false,"publicationDate":"2025-06-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Price, Melissa E. 0000-0002-4276-0855 mprice@usgs.gov","orcid":"https://orcid.org/0000-0002-4276-0855","contributorId":5875,"corporation":false,"usgs":true,"family":"Price","given":"Melissa","email":"mprice@usgs.gov","middleInitial":"E.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":943382,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kreiser, Brian","contributorId":210007,"corporation":false,"usgs":false,"family":"Kreiser","given":"Brian","affiliations":[{"id":38045,"text":"University of Southern Mississippi, Department of Biological Sciences, Hattiesburg, MS 39406","active":true,"usgs":false}],"preferred":false,"id":943383,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Randall, Michael T. 0000-0001-8805-0886 mrandall@usgs.gov","orcid":"https://orcid.org/0000-0001-8805-0886","contributorId":3127,"corporation":false,"usgs":true,"family":"Randall","given":"Michael","email":"mrandall@usgs.gov","middleInitial":"T.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true}],"preferred":true,"id":943384,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70268776,"text":"70268776 - 2025 - Long-term surgery survival, body condition effects, and incision healing of Silver Carp and buffalo species comparing sedation methods across seasons","interactions":[],"lastModifiedDate":"2025-08-04T15:55:57.902628","indexId":"70268776","displayToPublicDate":"2025-06-03T09:25:54","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":21984,"text":"Transactions of the American Fishery Society","active":true,"publicationSubtype":{"id":10}},"title":"Long-term surgery survival, body condition effects, and incision healing of Silver Carp and buffalo species comparing sedation methods across seasons","docAbstract":"<div class=\" sec\"><div class=\"title\">Objective</div><p class=\"chapter-para\">Internal tagging for telemetry studies requires invasive surgery procedures, necessitating sufficient sedation to support animal welfare. Challenges with existing chemical sedatives have resulted in technological alternatives, including electrosedation, with these newer methods less extensively studied. Our primary objective was to understand long-term survival, body-condition effects, and incision healing after surgical implantation of an imitation telemetry transmitter under three different sedation techniques.</p></div><div class=\" sec\"><div class=\"title\">Methods</div><p class=\"chapter-para\">We collected Silver Carp<span>&nbsp;</span><i>Hypophthalmichthys molitrix</i><span>&nbsp;</span>and buffalo<span>&nbsp;</span><i>Ictiobus</i><span>&nbsp;</span>spp. from the Missouri River watershed in 2022 and 2023, during each of the four seasons. One of three sedation techniques was applied: electric fish handling gloves, tricaine methanesulfonate (MS-222), and eugenol. Additionally, we observed a group of fish that were unsedated but subjected to handling similar to that experienced during surgery. Fish were monitored to determine the effects of treatment, individual characteristics, surgery characteristics, and time-varying environmental factors on survival, body condition, and incision healing over 69- to 85-d holding periods.</p></div><div class=\" sec\"><div class=\"title\">Results</div><p class=\"chapter-para\">Long-term survival was higher for buffalo (86%) than Silver Carp (57%), with the fewest mortalities during the winter trial and most in summer, but sedation treatment did not affect survival. Smaller fish had a greater risk of mortality but better incision healing. Incision healing scores improved in warmer temperatures.</p></div><div class=\" sec\"><div class=\"title\">Conclusions</div><p class=\"chapter-para\">Difference in seasonal effects on survival and healing indicate a need to consider trade-offs when scheduling tagging for projects. However, a lack of difference in survival among treatments, including the group that was handled but did not undergo surgery, suggests no advantage of one sedative over another, but handling impacts may require more consideration.</p></div>","language":"English","publisher":"American Fisheries Society","doi":"10.1093/tafafs/vnaf020","usgsCitation":"Acre, M.R., Bonjour, S.M., Griffin, J., Bratcher, R., Hessler, T., Broaddus, D., Mueller, A.T., Faulkner, J., Ridgway, J.L., Iacchetta, M.G., Colyer, S., and Calfee, R.D., 2025, Long-term surgery survival, body condition effects, and incision healing of Silver Carp and buffalo species comparing sedation methods across seasons: Transactions of the American Fishery Society, v. 154, no. 4, p. 424-439, https://doi.org/10.1093/tafafs/vnaf020.","productDescription":"16 p.","startPage":"424","endPage":"439","ipdsId":"IP-173367","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":491793,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"154","issue":"4","noUsgsAuthors":false,"publicationDate":"2025-06-03","publicationStatus":"PW","contributors":{"authors":[{"text":"Acre, Matthew Ross 0000-0002-5417-9523","orcid":"https://orcid.org/0000-0002-5417-9523","contributorId":268034,"corporation":false,"usgs":true,"family":"Acre","given":"Matthew","email":"","middleInitial":"Ross","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941914,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Bonjour, Sophia Marie 0000-0003-3614-7023","orcid":"https://orcid.org/0000-0003-3614-7023","contributorId":335936,"corporation":false,"usgs":true,"family":"Bonjour","given":"Sophia","email":"","middleInitial":"Marie","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941915,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Griffin, Jacob N. 0009-0008-5502-5412","orcid":"https://orcid.org/0009-0008-5502-5412","contributorId":357734,"corporation":false,"usgs":true,"family":"Griffin","given":"Jacob N.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941916,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bratcher, Robert","contributorId":352221,"corporation":false,"usgs":false,"family":"Bratcher","given":"Robert","affiliations":[{"id":16971,"text":"Missouri Department of Conservation","active":true,"usgs":false}],"preferred":false,"id":941917,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hessler, Tyler","contributorId":352222,"corporation":false,"usgs":false,"family":"Hessler","given":"Tyler","affiliations":[{"id":78382,"text":"formerly Columbia Environmental Research Center","active":true,"usgs":false}],"preferred":false,"id":941918,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Broaddus, Dustin 0000-0002-3160-0477","orcid":"https://orcid.org/0000-0002-3160-0477","contributorId":331134,"corporation":false,"usgs":true,"family":"Broaddus","given":"Dustin","email":"","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941919,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Mueller, Andrew T. 0000-0001-8566-8023","orcid":"https://orcid.org/0000-0001-8566-8023","contributorId":238278,"corporation":false,"usgs":true,"family":"Mueller","given":"Andrew","email":"","middleInitial":"T.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941920,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Faulkner, Jacob 0000-0002-8109-9107","orcid":"https://orcid.org/0000-0002-8109-9107","contributorId":238279,"corporation":false,"usgs":true,"family":"Faulkner","given":"Jacob","email":"","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941921,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Ridgway, Josey Lee 0000-0003-4157-7255","orcid":"https://orcid.org/0000-0003-4157-7255","contributorId":238277,"corporation":false,"usgs":true,"family":"Ridgway","given":"Josey","email":"","middleInitial":"Lee","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941922,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Iacchetta, Michael G. 0000-0001-9459-1435","orcid":"https://orcid.org/0000-0001-9459-1435","contributorId":291394,"corporation":false,"usgs":true,"family":"Iacchetta","given":"Michael","email":"","middleInitial":"G.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941923,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Colyer, Suzanne","contributorId":352223,"corporation":false,"usgs":false,"family":"Colyer","given":"Suzanne","affiliations":[{"id":78382,"text":"formerly Columbia Environmental Research Center","active":true,"usgs":false}],"preferred":false,"id":941924,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Calfee, Robin D. 0000-0001-6056-7023 rcalfee@usgs.gov","orcid":"https://orcid.org/0000-0001-6056-7023","contributorId":1841,"corporation":false,"usgs":true,"family":"Calfee","given":"Robin","email":"rcalfee@usgs.gov","middleInitial":"D.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":941925,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}}
,{"id":70267392,"text":"dr1211 - 2025 - Assessment of active sand volumes at Rockaway Beach and Fire Island in New York and Seven Mile Island in New Jersey","interactions":[],"lastModifiedDate":"2025-08-14T19:10:35.142305","indexId":"dr1211","displayToPublicDate":"2025-06-03T08:42:17","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":9318,"text":"Data Report","code":"DR","onlineIssn":"2771-9448","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"1211","displayTitle":"Assessment of Active Sand Volumes at Rockaway Beach and Fire Island in New York and Seven Mile Island in New Jersey","title":"Assessment of active sand volumes at Rockaway Beach and Fire Island in New York and Seven Mile Island in New Jersey","docAbstract":"<p>Between 2018 and 2023, the U.S. Geological Survey assessed shoreface sediment availability at three Atlantic Coast barrier island study sites in support of a National Fish and Wildlife Foundation project entitled, “Monitoring Hurricane Sandy Beach and Marsh Resilience in New York and New Jersey.” The three study sites are Seven Mile Island, New Jersey, Rockaway Beach peninsula, New York, and Fire Island, N.Y. Previously interpreted geologic boundaries from shoreface geophysical surveys and data from repeat bathymetric surveys at each of the study sites were integrated to quantify the active sediment volume, or the volume of sediment that could contribute to beach and shoreline behavior over annual to decadal time scales. This report describes the methods used to calculate these volumes and the variability of active sediment volume for each survey at the three study sites. Our data show that when shoreface volumes account for varying alongshore extent of each study site, Seven Mile Island and Rockaway Beach peninsula have about 1.5 times the active sediment volume measured at Fire Island.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/dr1211","issn":"2771-9448","collaboration":"Prepared in cooperation with the National Fish and Wildlife Foundation","programNote":"Natural Hazards Mission Area Coastal/Marine Hazards and Resources Program","usgsCitation":"Buster, N.A., Miselis, J.L., Wei, E.A., and Forde, A.S., 2025, Assessment of active sand volumes at Rockaway Beach and Fire Island in New York and Seven Mile Island in New Jersey: U.S. Geological Survey Data Report 1211, 19 p., https://doi.org/10.3133/dr1211.","productDescription":"Report: vii, 19 p.; 11 Data Releases","numberOfPages":"32","onlineOnly":"Y","ipdsId":"IP-164731","costCenters":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":486345,"rank":15,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9P07T3W","text":"USGS Data Release","linkHelpText":"- Coastal single-beam bathymetry data collected in 2022 off Seven Mile Island, New Jersey"},{"id":486367,"rank":13,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9M2EQIR","text":"USGS Data Release","linkHelpText":"- Coastal multibeam bathymetry and backscatter data collected in May 2021 from Seven Mile Island, New Jersey"},{"id":486334,"rank":8,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7PC30N8","text":"USGS Data Release","linkHelpText":"- Coastal bathymetry data collected in June 2018 from Fire Island, New York—Wilderness breach and shoreface"},{"id":486336,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P13TMXXY","text":"USGS Data Release","linkHelpText":"- Archive of chirp sub-bottom profile geophysical data collected in 2014 from Fire Island, New York"},{"id":486332,"rank":5,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/dr1211/full","linkFileType":{"id":5,"text":"html"},"description":"DR 1211 HTML"},{"id":486331,"rank":4,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/dr/1211/dr1211.XML","linkFileType":{"id":8,"text":"xml"},"description":"DR 1211 XML"},{"id":494127,"rank":17,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_118629.htm","linkFileType":{"id":5,"text":"html"}},{"id":486346,"rank":16,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P13TUAJH","text":"USGS Data Release","linkHelpText":"- Coastal multibeam bathymetry and backscatter data collected in May 2023 from Seven Mile Island, New Jersey"},{"id":486344,"rank":12,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9BSJHVL","text":"USGS Data Release","linkHelpText":"- Coastal multibeam bathymetry data collected in 2018 offshore of Seven Mile Island, New Jersey"},{"id":486338,"rank":9,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9ZO8QKJ","text":"USGS Data Release","linkHelpText":"- Archive of chirp subbottom profile data collected in 2019 from Rockaway Peninsula, New York"},{"id":486329,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/dr/1211/coverthb.jpg"},{"id":486330,"rank":3,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/dr/1211/dr1211.pdf","size":"8.47 MB","linkFileType":{"id":1,"text":"pdf"},"description":"DR 1211"},{"id":486328,"rank":2,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/dr/1211/images"},{"id":486343,"rank":11,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9HNK9CJ","text":"USGS Data Release","linkHelpText":"- Coastal bathymetry and backscatter data collected in June 2021 from Rockaway Peninsula, New York"},{"id":486342,"rank":10,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9WNJSFN","text":"USGS Data Release","linkHelpText":"- Coastal bathymetry and backscatter data collected in September and October 2019 from Rockaway Peninsula, New York"},{"id":486337,"rank":14,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9PY4RR0","text":"USGS Data Release","linkHelpText":"- Archive of chirp subbottom profile data collected in 2022 from Seven Mile Island, New Jersey"},{"id":486335,"rank":7,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9Q8TVHH","text":"USGS Data Release","linkHelpText":"- Archive of chirp subbottom profile data collected in June 2018 from Fire Island, New York"}],"country":"United States","state":"New York, New Jersey","otherGeospatial":"Fire Island, Rockaway Beach, Seven Mile Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      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[\n              -72.62485859719426,\n              40.7895678737479\n            ],\n            [\n              -72.65861936844534,\n              40.798769107252184\n            ],\n            [\n              -72.84362839490193,\n              40.747123468064586\n            ],\n            [\n              -72.97326975650722,\n              40.7092586100606\n            ],\n            [\n              -73.18191056337197,\n              40.65498256054374\n            ],\n            [\n              -73.28184252930525,\n              40.63448918974106\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -73.77143139657986,\n              40.60979328523072\n            ],\n            [\n              -73.88374392772573,\n              40.60979328523072\n            ],\n            [\n              -73.88374392772573,\n              40.55246713172343\n            ],\n            [\n              -73.77143139657986,\n              40.55246713172343\n            ],\n            [\n              -73.77143139657986,\n              40.60979328523072\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a data-mce-href=\"https://www.usgs.gov/centers/spcmsc\" href=\"https://www.usgs.gov/centers/spcmsc\">St. Petersburg Coastal and Marine Science Center</a><br>U.S. Geological Survey<br>600 4th Street South<br>St. Petersburg, FL 33701<br></p><p><a id=\"LPlnkOWAb30f03cb-e6c0-c412-988f-235c353ce0b0\" class=\"OWAAutoLink\" href=\"https://pubs.usgs.gov/contact\" data-auth=\"NotApplicable\" data-olk-copy-source=\"MailCompose\" data-mce-href=\"../contact\">Contact Us- USGS Publications Warehouse</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Setting</li><li>Methods</li><li>Results</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"publishedDate":"2025-05-22","noUsgsAuthors":false,"publicationDate":"2025-05-22","publicationStatus":"PW","contributors":{"authors":[{"text":"Buster, Noreen A. 0000-0001-5069-9284 nbuster@usgs.gov","orcid":"https://orcid.org/0000-0001-5069-9284","contributorId":3750,"corporation":false,"usgs":true,"family":"Buster","given":"Noreen","email":"nbuster@usgs.gov","middleInitial":"A.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":938077,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Miselis, Jennifer L. 0000-0002-4925-3979 jmiselis@usgs.gov","orcid":"https://orcid.org/0000-0002-4925-3979","contributorId":3914,"corporation":false,"usgs":true,"family":"Miselis","given":"Jennifer","email":"jmiselis@usgs.gov","middleInitial":"L.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":938074,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Wei, Emily A. 0000-0003-4008-0933","orcid":"https://orcid.org/0000-0003-4008-0933","contributorId":223488,"corporation":false,"usgs":true,"family":"Wei","given":"Emily","email":"","middleInitial":"A.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":938075,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Forde, Arnell S. 0000-0002-5581-2255 aforde@usgs.gov","orcid":"https://orcid.org/0000-0002-5581-2255","contributorId":376,"corporation":false,"usgs":true,"family":"Forde","given":"Arnell","email":"aforde@usgs.gov","middleInitial":"S.","affiliations":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":938076,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70267830,"text":"70267830 - 2025 - Legacies of a large flood and biological control on riparian vegetation successional trajectories along a dryland braided river","interactions":[],"lastModifiedDate":"2025-06-03T15:08:56.171183","indexId":"70267830","displayToPublicDate":"2025-06-03T08:03:34","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3301,"text":"River Research and Applications","active":true,"publicationSubtype":{"id":10}},"title":"Legacies of a large flood and biological control on riparian vegetation successional trajectories along a dryland braided river","docAbstract":"<p><span>The interplay of disturbance and stability drives vegetation dynamics. Disturbance reduces vegetation biomass, and stability fosters its development. In riparian systems, natural disturbance is largely manifested through flood-driven fluvial processes, but other forms of disturbance, such as herbivory or fire, may influence vegetation dynamics. We studied the successional trajectories of plant communities following a 40-year flood in 2010 that significantly changed floodplain vegetation along the lower Virgin River (southwestern USA). Shortly (0–2 years) after this flood, another large disturbance event of a different nature occurred: extensive defoliation and some mortality of alien&nbsp;</span><i>Tamarix</i><span>&nbsp;shrubs (which dominated vegetation cover at that time in the study area) by a biological control beetle. In 2021, we resampled vegetation and topography in 439 plots that we previously monitored in 2010, 2012, 2015, and 2017 along 23 transects across five river reaches. Between 2015 and 2021, stability predominated, with only small floods (1.5- to 3-year) and limited&nbsp;</span><i>Tamarix</i><span>&nbsp;defoliation. By 2021, plant communities were converging, but persistent divergences existed and were associated with legacy effects of fluvial disturbance and defoliation. Native&nbsp;</span><i>Pluchea sericea</i><span>&nbsp;shrubs had the highest cover across all fluvial landforms.&nbsp;</span><i>Tamarix</i><span>&nbsp;partially recovered from defoliation, but only reached similar cover to&nbsp;</span><i>P. sericea</i><span>&nbsp;in plots less affected by the 40-year flood. Native&nbsp;</span><i>Populus fremontii</i><span>,&nbsp;</span><i>Prosopis pubescens</i><span>, and&nbsp;</span><i>Salix gooddingii</i><span>&nbsp;trees, and&nbsp;</span><i>Salix exigua</i><span>&nbsp;shrubs,&nbsp;remained subordinate. Our study illustrates how successional trajectories in riparian systems depend on the nature and regime of disturbance and its legacy effects on vegetation.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/rra.4422","usgsCitation":"González-Sargas, E., Lee, S.R., Perry, L.G., and Shafroth, P., 2025, Legacies of a large flood and biological control on riparian vegetation successional trajectories along a dryland braided river: River Research and Applications, v. 41, no. 5, p. 1169-1185, https://doi.org/10.1002/rra.4422.","productDescription":"17 p.","startPage":"1169","endPage":"1185","ipdsId":"IP-170124","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":489460,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arizona, Nevada, Utah","otherGeospatial":"Virgin River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -114.19720582198697,\n              37.07102313333917\n            ],\n            [\n              -114.19720582198697,\n              36.74753892653335\n            ],\n            [\n              -113.82726177557198,\n              36.74753892653335\n            ],\n            [\n              -113.82726177557198,\n              37.07102313333917\n            ],\n            [\n              -114.19720582198697,\n              37.07102313333917\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"41","issue":"5","noUsgsAuthors":false,"publicationDate":"2025-02-05","publicationStatus":"PW","contributors":{"authors":[{"text":"González-Sargas, Eduardo","contributorId":349720,"corporation":false,"usgs":false,"family":"González-Sargas","given":"Eduardo","affiliations":[{"id":6621,"text":"Colorado State University","active":true,"usgs":false}],"preferred":false,"id":939064,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Lee, Steven R. 0000-0002-4581-3684 srlee@usgs.gov","orcid":"https://orcid.org/0000-0002-4581-3684","contributorId":5630,"corporation":false,"usgs":true,"family":"Lee","given":"Steven","email":"srlee@usgs.gov","middleInitial":"R.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":939065,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Perry, Laura G.","contributorId":220048,"corporation":false,"usgs":false,"family":"Perry","given":"Laura","email":"","middleInitial":"G.","affiliations":[{"id":6621,"text":"Colorado State University","active":true,"usgs":false}],"preferred":false,"id":939066,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Shafroth, Patrick B. 0000-0002-6064-871X","orcid":"https://orcid.org/0000-0002-6064-871X","contributorId":225182,"corporation":false,"usgs":true,"family":"Shafroth","given":"Patrick B.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":939067,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70267805,"text":"sir20255046 - 2025 - Evaluation of passive samplers for cyanotoxin detection by immunoassay and chromatographic-mass spectrometry","interactions":[],"lastModifiedDate":"2025-06-03T14:45:40.689322","indexId":"sir20255046","displayToPublicDate":"2025-06-02T13:00:00","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2025-5046","displayTitle":"Evaluation of Passive Samplers for Cyanotoxin Detection by Immunoassay and Chromatographic-Mass Spectrometry","title":"Evaluation of passive samplers for cyanotoxin detection by immunoassay and chromatographic-mass spectrometry","docAbstract":"<p>Harmful algal blooms, particularly cyanobacterial harmful algal blooms, threaten aquatic ecosystems, drinking water supplies, and recreational resources. In 2019, the U.S. Geological Survey, in collaboration with the New York State Department of Environmental Conservation, deployed solid phase adsorption toxin tracking (SPATT) samplers in Seneca Lake, Owasco Lake, and Skaneateles Lake to monitor the cyanotoxins microcystins, cylindrospermopsins, anatoxins, and saxitoxins. SPATT samplers can passively adsorb dissolved cyanotoxins over time, providing time-integrated data capable of detecting low concentrations of cyanotoxins that traditional discrete sampling may miss. SPATT samples were analyzed using enzyme-linked immunosorbent assay (ELISA), liquid chromatography with mass spectrometry (LC–MS), and with tandem mass spectrometry (LC–MS/MS). The effects of ELISA-required preservative on measurements by mass spectrometry methods were also evaluated.</p><p>SPATT samplers consistently detected microcystins and anatoxins more frequently than concurrent discrete sampling. ELISA results often showed higher cyanotoxin concentrations than LC–MS/MS, likely due to interference from dissolved organic matter and the ability of ELISA to detect a broader range of congeners. The addition of preservative influenced results for some analytes, particularly microcystins, which showed higher concentrations in preserved samples. Limitations in ELISA methods for cylindrospermopsins and saxitoxins were identified, potentially related to cross-reactivity, low sensitivity, or other matrix interferences. This study demonstrates the utility of SPATT samplers in capturing cyanotoxin variability, especially in environments with low cyanotoxin levels or ephemeral blooms. Further research could help improve the reliability of ELISA and other analytical methods in freshwater ecosystems.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20255046","usgsCitation":"Johnston, B.D., Stouder, M.D.W., Gorney, R.M., Rosen, J.J., Carpenter, K.D., Wei, B., and Boyer, G.L., 2025, Evaluation of passive samplers for cyanotoxin detection by immunoassay and chromatographic-mass spectrometry: U.S. Geological Survey Scientific Investigations Report 2025–5046, 37 p., https://doi.org/10.3133/sir20255046.","productDescription":"Report: vii, 37 p.; Data Release; Dataset","numberOfPages":"37","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-155470","costCenters":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true},{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true},{"id":27821,"text":"Caribbean-Florida Water Science Center","active":true,"usgs":true}],"links":[{"id":489336,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2025/5046/coverthb.jpg"},{"id":489341,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9OZR89E","text":"USGS data release","linkHelpText":"Cyanotoxin concentrations in extracts from solid phase adsorption toxin tracking (SPATT) and diffusive gradients in thin-films (DGT) samplers in Owasco Lake, Seneca Lake, and Skaneateles Lake, Finger Lakes Region, New York, 2019"},{"id":489337,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2025/5046/sir20255046.pdf","text":"Report","size":"3.86 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2025-5046 PDF"},{"id":489338,"rank":3,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/publication/sir20255046/full","linkFileType":{"id":5,"text":"html"},"description":"SIR 2025-5046 HTML"},{"id":489340,"rank":5,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/sir/2025/5046/images/"},{"id":489342,"rank":7,"type":{"id":28,"text":"Dataset"},"url":"https://doi.org/10.5066/F7P55KJN","text":"USGS National Water Information System database","linkHelpText":"- USGS water data for the Nation"},{"id":489339,"rank":4,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/sir/2025/5046/sir20255046.XML","linkFileType":{"id":8,"text":"xml"},"description":"SIR 2025-5046 XML"}],"country":"United States","state":"New York","otherGeospatial":"Finger Lakes region","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -77.6117637558914,\n              43.06229154077565\n            ],\n            [\n              -77.6117637558914,\n              42.20716570269167\n            ],\n            [\n              -75.94026793939489,\n              42.20716570269167\n            ],\n            [\n              -75.94026793939489,\n              43.06229154077565\n            ],\n            [\n              -77.6117637558914,\n              43.06229154077565\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_ny@usgs.gov\" data-mce-href=\"mailto:dc_ny@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/new-york-water-science-center\" data-mce-href=\"https://www.usgs.gov/centers/new-york-water-science-center\">New York Water Science Center</a><br>U.S. Geological Survey<br>425 Jordan Road<br>Troy, NY 12180–8349</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Description of Study Area</li><li>SPATT Sampler Methods</li><li>Discrete Sample Methods</li><li>Sample Quality Assurance and Control</li><li>Results of Cyanotoxin Analyses</li><li>Comparative Analysis of SPATT and Discrete Sample Results</li><li>Discussion of SPATT Efficacy and Cyanotoxin Detection</li><li>Summary</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":11,"text":"Pembroke PSC"},"publishedDate":"2025-06-02","noUsgsAuthors":false,"publicationDate":"2025-06-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Johnston, Brett D. 0000-0003-2991-4976","orcid":"https://orcid.org/0000-0003-2991-4976","contributorId":206233,"corporation":false,"usgs":true,"family":"Johnston","given":"Brett","email":"","middleInitial":"D.","affiliations":[{"id":27821,"text":"Caribbean-Florida Water Science Center","active":true,"usgs":true}],"preferred":true,"id":938957,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Stouder, Michael D.W. 0000-0002-0446-2574","orcid":"https://orcid.org/0000-0002-0446-2574","contributorId":301805,"corporation":false,"usgs":true,"family":"Stouder","given":"Michael","middleInitial":"D.W.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":938958,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Gorney, Rebecca Michelle 0000-0003-4406-261X","orcid":"https://orcid.org/0000-0003-4406-261X","contributorId":317259,"corporation":false,"usgs":true,"family":"Gorney","given":"Rebecca","email":"","middleInitial":"Michelle","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":938959,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Rosen, Joshua J. 0000-0001-5420-033X","orcid":"https://orcid.org/0000-0001-5420-033X","contributorId":332009,"corporation":false,"usgs":true,"family":"Rosen","given":"Joshua","email":"","middleInitial":"J.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":938960,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Carpenter, Kurt D. 0000-0002-6231-8335 kdcar@usgs.gov","orcid":"https://orcid.org/0000-0002-6231-8335","contributorId":127442,"corporation":false,"usgs":true,"family":"Carpenter","given":"Kurt","email":"kdcar@usgs.gov","middleInitial":"D.","affiliations":[{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":938961,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Wei, Bofan 0009-0002-8746-1266","orcid":"https://orcid.org/0009-0002-8746-1266","contributorId":356272,"corporation":false,"usgs":false,"family":"Wei","given":"Bofan","affiliations":[{"id":37519,"text":"SUNY College of Environmental Science and Forestry","active":true,"usgs":false}],"preferred":false,"id":938962,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Boyer, Gregory L. 0000-0003-4490-5461","orcid":"https://orcid.org/0000-0003-4490-5461","contributorId":289584,"corporation":false,"usgs":false,"family":"Boyer","given":"Gregory","email":"","middleInitial":"L.","affiliations":[{"id":62197,"text":"Department of Chemistry, State University of New York, Syracuse, College of Environmental Science and Forestry, Syracuse, New York, USA","active":true,"usgs":false}],"preferred":false,"id":938963,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70267735,"text":"ofr20251017 - 2025 - Validation of the geometric accuracy of airborne light detection and ranging data for eastern Iowa, 2019","interactions":[],"lastModifiedDate":"2025-08-14T19:08:49.554298","indexId":"ofr20251017","displayToPublicDate":"2025-06-02T10:54:22","publicationYear":"2025","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2025-1017","displayTitle":"Validation of the Geometric Accuracy of Airborne Light Detection and Ranging Data for Eastern Iowa, 2019","title":"Validation of the geometric accuracy of airborne light detection and ranging data for eastern Iowa, 2019","docAbstract":"<p>A geometric accuracy assessment of lidar data collected in eastern Iowa in 2019 as part of the 3D Elevation Program (3DEP) was conducted. The assessment involved evaluating interswath accuracy, same surface precision, point density, absolute accuracy, and consistency with adjacent 3DEP datasets. The results demonstrate that the data meet or exceed the quality level 2 specifications outlined in the Lidar Base Specifications (LBS). Interswath and same surface precision values were within specified tolerances, with a root mean square difference of 0.03 meters for interswath vertical accuracy and 0.03 meters for same surface precision. Vertical accuracy in flat areas was excellent, with root mean square error values consistently below 0.10 meters. Horizontal accuracy assessments also showed good agreement between lidar and reference data. Point density generally exceeded the minimum requirement of 2 points per square meter, and the inter-project consistency assessment indicated good agreement between the Iowa lidar data and adjacent datasets.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20251017","usgsCitation":"Sampath, A., Irwin, J., and Kropuenske, T., 2025, Validation of the geometric accuracy of airborne light detection and ranging data for eastern Iowa, 2019: U.S. Geological Survey Open-File Report 2025–1017, 16 p., https://doi.org/10.3133/ofr20251017.","productDescription":"Report: v, 16 p.; Data Release","numberOfPages":"16","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-167726","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":487536,"rank":4,"type":{"id":31,"text":"Publication XML"},"url":"https://pubs.usgs.gov/of/2025/1017/ofr20251017.XML","text":"XML","size":"90.4 KB","linkFileType":{"id":8,"text":"xml"},"description":"OFR 2025-1017 XML"},{"id":487518,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2025/1017/ofr20251017.pdf","text":"Report","size":"3.15","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2025-1017"},{"id":487511,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2025/1017/coverthb.jpg"},{"id":487523,"rank":3,"type":{"id":34,"text":"Image Folder"},"url":"https://pubs.usgs.gov/of/2025/1017/images"},{"id":487546,"rank":5,"type":{"id":39,"text":"HTML Document"},"url":"https://pubs.usgs.gov/preview/ofr20251017/full"},{"id":487578,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9DI0G64","text":"USGS data release","linkHelpText":"2019 Eastern Iowa topographic lidar validation – USGS field survey data"},{"id":494125,"rank":7,"type":{"id":36,"text":"NGMDB Index Page"},"url":"https://ngmdb.usgs.gov/Prodesc/proddesc_118628.htm","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Iowa","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -93.29294140522802,\n              43.01135367569728\n            ],\n            [\n              -93.29294140522802,\n              40.35261453917326\n            ],\n            [\n              -89.92207321354842,\n              40.35261453917326\n            ],\n            [\n              -89.92207321354842,\n              43.01135367569728\n            ],\n            [\n              -93.29294140522802,\n              43.01135367569728\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/eros\" data-mce-href=\"https://www.usgs.gov/centers/eros\">Earth Resources Observation and Science Center</a><br>U.S. Geological Survey<br>47914 252nd Street<br>Sioux Falls, SD 57198</p><p><a href=\"../contact\" data-mce-href=\"../contact\">Contact Pubs Warehouse</a></p>","tableOfContents":"<ul><li>Abstract</li><li>Introduction</li><li>Methods</li><li>Results</li><li>Discussion</li><li>Conclusions</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"publishedDate":"2025-06-02","noUsgsAuthors":false,"publicationDate":"2025-06-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Sampath, Aparajithan 0000-0002-6922-4913 asampath@usgs.gov","orcid":"https://orcid.org/0000-0002-6922-4913","contributorId":3622,"corporation":false,"usgs":true,"family":"Sampath","given":"Aparajithan","email":"asampath@usgs.gov","affiliations":[{"id":54490,"text":"KBR, Inc., under contract to USGS","active":true,"usgs":false}],"preferred":true,"id":938673,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Irwin, Jeffrey 0000-0001-5828-0787 jrirwin@usgs.gov","orcid":"https://orcid.org/0000-0001-5828-0787","contributorId":222485,"corporation":false,"usgs":true,"family":"Irwin","given":"Jeffrey","email":"jrirwin@usgs.gov","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":938674,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kropuenske, Travis 0000-0002-3269-4225 tkropuenske@contractor.usgs.gov","orcid":"https://orcid.org/0000-0002-3269-4225","contributorId":356294,"corporation":false,"usgs":false,"family":"Kropuenske","given":"Travis","email":"tkropuenske@contractor.usgs.gov","affiliations":[{"id":40546,"text":"KBR, Contractor to the USGS Earth Resources Observation and Science (EROS) Center","active":true,"usgs":false}],"preferred":false,"id":939077,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70267839,"text":"70267839 - 2025 - Assessing gap-filled Landsat land surface temperature time-series data using different observational datasets","interactions":[],"lastModifiedDate":"2025-06-23T15:25:59.175515","indexId":"70267839","displayToPublicDate":"2025-06-02T09:11:24","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2068,"text":"International Journal of Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Assessing gap-filled Landsat land surface temperature time-series data using different observational datasets","docAbstract":"<p><span>Landsat Analysis Ready Data (ARD)-based time-series present challenges in monitoring surface urban heat islands (SUHI) due to rapid changes in land surface temperature (LST) compared to cloud-free satellite observations. This research investigates the use of a spatiotemporal gap-filling model as a feasible and cost-effective solution to produce Landsat time-series LST products with both high spatial resolution and temporal frequency. The study identified and filled Landsat ARD thermal times-series data gaps due to missing data, cloud and shadow effects, and data quality. The accuracy of Landsat gap-filled products was assessed using randomly selected clear observations of Landsat and uncertainty products from the gap-filling model and was evaluated using various existing temperature datasets, including climate data from NOAA Global Historical Climate Network station observations, Daily Surface Weather and Climatological Summaries (DAYMET), and LST including MODIS, VIIRS and ECOSTRESS. The result suggests that the gap-filled Landsat LST has significant correlations with existing datasets including field observation and remote sensing data derived from other sensors that have similar monthly and seasonal variation patterns. The uncertainty maps show spatial distributions of uncertainty for gap-filled pixels that have high or low uncertainties. The Landsat gap-filled time-series datasets can be used to measure annual, seasonal, or even monthly landscape thermal conditions, which are useful for SUHI and relevant research, and to perform multi-decade time-series LST change analysis under climate change conditions.</span></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/01431161.2025.2505254","usgsCitation":"Shi, H., and Xian, G.Z., 2025, Assessing gap-filled Landsat land surface temperature time-series data using different observational datasets: International Journal of Remote Sensing, v. 46, no. 12, p. 4559-4582, https://doi.org/10.1080/01431161.2025.2505254.","productDescription":"24 p.","startPage":"4559","endPage":"4582","ipdsId":"IP-160289","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":489562,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"46","issue":"12","noUsgsAuthors":false,"publicationDate":"2025-06-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Shi, Hua 0000-0001-7013-1565","orcid":"https://orcid.org/0000-0001-7013-1565","contributorId":302265,"corporation":false,"usgs":false,"family":"Shi","given":"Hua","affiliations":[],"preferred":false,"id":939092,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Xian, George Z. 0000-0001-5674-2204","orcid":"https://orcid.org/0000-0001-5674-2204","contributorId":238919,"corporation":false,"usgs":true,"family":"Xian","given":"George","email":"","middleInitial":"Z.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":939093,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70267826,"text":"70267826 - 2025 - Municipal and industrial wastewater treatment plant effluent contributions to per- and polyfluoroalkyl substances in the Potomac River: A basin-scale measuring and modeling approach","interactions":[],"lastModifiedDate":"2025-06-23T15:24:34.127021","indexId":"70267826","displayToPublicDate":"2025-06-02T09:01:03","publicationYear":"2025","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5925,"text":"Environmental Science and Technology","active":true,"publicationSubtype":{"id":10}},"title":"Municipal and industrial wastewater treatment plant effluent contributions to per- and polyfluoroalkyl substances in the Potomac River: A basin-scale measuring and modeling approach","docAbstract":"<p><span>Managing per- and polyfluoroalkyl substances (PFAS) in water resources requires a basin-scale approach. Predicted environmental concentrations (PEC) and stream-vulnerability scores for PFAS were determined for the Potomac River watershed in the eastern United States. Approximately 15% of stream reaches contained municipal and/or industrial wastewater treatment plant (WWTP) discharges that are presumptive PFAS sources, comprising from &lt;1 to &gt;90% of streamflow. Mean annual PEC, based on the summed concentrations of eight PFAS detected in WWTP effluents (ΣPFAS</span><sub>PEC</sub><span>), for all stream reaches in the watershed was 3.8 ng L</span><sup>–1</sup><span>, and stream reaches impacted by WWTP had perfluorooctanoate (PFOA) and perfluorooctanesulfonate (PFOS) PEC of 0.39 and 0.14 ng L</span><sup>–1</sup><span>. For locations where measured-environmental concentrations (MEC) were determined, municipal and industrial WWTP contributed 7.8% (0 to 65%) of the total annual streamflow and MEC were greater than PEC in 99% of the samples, indicating additional potential PFAS sources. The mean ΣPFAS</span><sub>PEC</sub><span>&nbsp;was 9.1 ng L</span><sup>–1</sup><span>&nbsp;compared to a mean sum of PFAS MEC of 34 ng L</span><sup>–1</sup><span>. Under mean-August low-flow, 17% and 9.4% of the water-supply intakes had maximum PFOA and PFOS PEC exceeding drinking water maximum contaminant levels.</span></p>","language":"English","publisher":"American Chemical Society","doi":"10.1021/acs.est.4c12167","usgsCitation":"Barber, L., Miller, S.A., Blaney, L., Bradley, P., Faunce, K.E., Fleck, J., Frick, M., He, K., Hollins, R., Lewellyn, C., Majcher, E.H., McAdoo, M.A., and Smalling, K., 2025, Municipal and industrial wastewater treatment plant effluent contributions to per- and polyfluoroalkyl substances in the Potomac River: A basin-scale measuring and modeling approach: Environmental Science and Technology, v. 59, no. 23, p. 11720-11734, https://doi.org/10.1021/acs.est.4c12167.","productDescription":"15 p.","startPage":"11720","endPage":"11734","ipdsId":"IP-159910","costCenters":[{"id":37464,"text":"WMA - Laboratory & Analytical Services Division","active":true,"usgs":true}],"links":[{"id":491461,"rank":2,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1021/acs.est.4c12167.","text":"External Repository"},{"id":489484,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Maryland, Pennsylvania, Virginia, West Virginia","otherGeospatial":"Potomac River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -77.39010453967498,\n              38.752691597185276\n            ],\n            [\n              -77.41287188588434,\n              38.37965397161355\n            ],\n            [\n              -76.30362109061913,\n              37.744281422513666\n            ],\n            [\n              -76.21247602177843,\n              37.93634553642505\n            ],\n            [\n              -76.74054284099122,\n              38.365258541059845\n            ],\n            [\n              -77.04066573194639,\n              38.78820834695361\n            ],\n            [\n              -77.39010453967498,\n              38.752691597185276\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","volume":"59","issue":"23","noUsgsAuthors":false,"publicationDate":"2025-06-02","publicationStatus":"PW","contributors":{"authors":[{"text":"Barber, Larry B. 0000-0002-0561-0831","orcid":"https://orcid.org/0000-0002-0561-0831","contributorId":218953,"corporation":false,"usgs":true,"family":"Barber","given":"Larry B.","affiliations":[{"id":37277,"text":"WMA - 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