{"pageNumber":"649","pageRowStart":"16200","pageSize":"25","recordCount":40805,"records":[{"id":70046704,"text":"ds778 - 2013 - SSR_pipeline--computer software for the identification of microsatellite sequences from paired-end Illumina high-throughput DNA sequence data","interactions":[],"lastModifiedDate":"2013-06-26T09:52:58","indexId":"ds778","displayToPublicDate":"2013-06-26T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":310,"text":"Data Series","code":"DS","onlineIssn":"2327-638X","printIssn":"2327-0271","active":false,"publicationSubtype":{"id":5}},"seriesNumber":"778","title":"SSR_pipeline--computer software for the identification of microsatellite sequences from paired-end Illumina high-throughput DNA sequence data","docAbstract":"SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (SSRs; for example, microsatellites) from paired-end high-throughput Illumina DNA sequencing data. The program suite contains three analysis modules along with a fourth control module that can be used to automate analyses of large volumes of data. The modules are used to (1) identify the subset of paired-end sequences that pass quality standards, (2) align paired-end reads into a single composite DNA sequence, and (3) identify sequences that possess microsatellites conforming to user specified parameters. Each of the three separate analysis modules also can be used independently to provide greater flexibility or to work with FASTQ or FASTA files generated from other sequencing platforms (Roche 454, Ion Torrent, etc).\n\nAll modules are implemented in the Python programming language and can therefore be used from nearly any computer operating system (Linux, Macintosh, Windows). The program suite relies on a compiled Python extension module to perform paired-end alignments. Instructions for compiling the extension from source code are provided in the documentation. Users who do not have Python installed on their computers or who do not have the ability to compile software also may choose to download packaged executable files. These files include all Python scripts, a copy of the compiled extension module, and a minimal installation of Python in a single binary executable. See program documentation for more information.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ds778","usgsCitation":"Miller, M.P., Knaus, B.J., Mullins, T., and Haig, S.M., 2013, SSR_pipeline--computer software for the identification of microsatellite sequences from paired-end Illumina high-throughput DNA sequence data: U.S. Geological Survey Data Series 778, HTML Document; Program Documentation; Program Executable Files, https://doi.org/10.3133/ds778.","productDescription":"HTML Document; Program Documentation; Program Executable Files","onlineOnly":"Y","additionalOnlineFiles":"Y","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"links":[{"id":274247,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ds778.jpg"},{"id":274240,"type":{"id":19,"text":"Raw Data"},"url":"https://pubs.usgs.gov/ds/778/01_SSR_pipeline_0.95_src_and_docs.tgz"},{"id":274241,"type":{"id":19,"text":"Raw Data"},"url":"https://pubs.usgs.gov/ds/778/03_SSR_pipeline_sample_data.zip"},{"id":274238,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/ds/778/"},{"id":274242,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/ds/778/04_SSR_pipeline_documentation.pdf"},{"id":274239,"type":{"id":19,"text":"Raw Data"},"url":"https://pubs.usgs.gov/ds/778/02_SSR_pipeline_0.95_src_and_docs.zip"},{"id":274243,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/ds/778/05_SSR_pipeline_0.95_win32_executeables.zip"},{"id":274244,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/ds/778/08_SSR_pipeline_0.95_32bit_linux.tar.gz"},{"id":274245,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/ds/778/06_SSR_pipeline_0.95_64bit_linux.tar.gz"},{"id":274246,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/ds/778/07_SSR_pipeline_0.95_OSX64bit.tar.gz"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51cbff57e4b052f2a453988b","contributors":{"authors":[{"text":"Miller, Mark P. 0000-0003-1045-1772 mpmiller@usgs.gov","orcid":"https://orcid.org/0000-0003-1045-1772","contributorId":1967,"corporation":false,"usgs":true,"family":"Miller","given":"Mark","email":"mpmiller@usgs.gov","middleInitial":"P.","affiliations":[{"id":38131,"text":"WMA - Office of Planning and Programming","active":true,"usgs":true}],"preferred":true,"id":480044,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Knaus, Brian J.","contributorId":107167,"corporation":false,"usgs":true,"family":"Knaus","given":"Brian","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":480046,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mullins, Thomas D.","contributorId":12819,"corporation":false,"usgs":true,"family":"Mullins","given":"Thomas D.","affiliations":[],"preferred":false,"id":480045,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Haig, Susan M. 0000-0002-6616-7589 susan_haig@usgs.gov","orcid":"https://orcid.org/0000-0002-6616-7589","contributorId":719,"corporation":false,"usgs":true,"family":"Haig","given":"Susan","email":"susan_haig@usgs.gov","middleInitial":"M.","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true},{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"preferred":true,"id":480043,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70046063,"text":"70046063 - 2013 - Marine radiocarbon reservoir age variation in Donax obesulus shells from northern Peru: Late Holocene evidence for extended El Niño","interactions":[],"lastModifiedDate":"2020-10-16T12:11:56.701403","indexId":"70046063","displayToPublicDate":"2013-06-26T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1796,"text":"Geology","active":true,"publicationSubtype":{"id":10}},"title":"Marine radiocarbon reservoir age variation in Donax obesulus shells from northern Peru: Late Holocene evidence for extended El Niño","docAbstract":"<p><span>For at least 6 m.y., El Niño events have posed the greatest environmental risk on the Peruvian coast. A better understanding of El Niño is essential for predicting future risk and growth in this tropical desert. To achieve this we analyzed archaeological and modern pre-bomb shells from the surf clam&nbsp;</span><i>Donax</i><span>&nbsp;for the radiocarbon reservoir effect (ΔR) to characterize late Holocene coastal upwelling conditions in northern Peru (8°14′S). Mean ΔR values from these shells suggest that modern upwelling conditions in this region were likely established between A.D. 539 and A.D. 1578. Our radiocarbon data suggest that upwelling conditions ca. A.D. 539 were less intense than those in modern times. The observed coastal water enrichment in&nbsp;</span><sup>14</sup><span>C may be consequence of frequent strong El Niño events or extended El Niño–like conditions. These ΔR-inferred marine conditions are in agreement with proposed extended El Niño activity in proxy and archaeological records of ca. A.D. 475–530. Extended El Niño conditions have been linked to political destabilization, societal transformation, and collapse of the Moche civilization in northern Peru. A return to such conditions would have significant impacts on the dense population of this region today and in the near future.</span></p>","language":"English","publisher":"Geological Society of America","doi":"10.1130/G34065.1","usgsCitation":"Etayo-Cadavid, M.F., Andrus, C.F., Jones, K.B., Hodgins, G.W., Sandweiss, D., Uceda-Castillo, S., and Quilter, J., 2013, Marine radiocarbon reservoir age variation in Donax obesulus shells from northern Peru: Late Holocene evidence for extended El Niño: Geology, v. 41, no. 5, p. 599-602, https://doi.org/10.1130/G34065.1.","productDescription":"4 p.","startPage":"599","endPage":"602","ipdsId":"IP-025087","costCenters":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":274249,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Peru","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -81.33,-18.35 ], [ -81.33,-0.04 ], [ -68.65,-0.04 ], [ -68.65,-18.35 ], [ -81.33,-18.35 ] ] ] } } ] }","volume":"41","issue":"5","noUsgsAuthors":false,"publicationDate":"2013-03-18","publicationStatus":"PW","scienceBaseUri":"51cbff55e4b052f2a4539873","contributors":{"authors":[{"text":"Etayo-Cadavid, Miguel F.","contributorId":16296,"corporation":false,"usgs":true,"family":"Etayo-Cadavid","given":"Miguel","email":"","middleInitial":"F.","affiliations":[],"preferred":false,"id":478797,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Andrus, C. Fred T.","contributorId":80568,"corporation":false,"usgs":true,"family":"Andrus","given":"C.","email":"","middleInitial":"Fred T.","affiliations":[],"preferred":false,"id":478800,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Jones, Kevin B. 0000-0002-6386-2623 kevinjones@usgs.gov","orcid":"https://orcid.org/0000-0002-6386-2623","contributorId":565,"corporation":false,"usgs":true,"family":"Jones","given":"Kevin","email":"kevinjones@usgs.gov","middleInitial":"B.","affiliations":[{"id":241,"text":"Eastern Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":478795,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hodgins, Gregory W. L.","contributorId":67787,"corporation":false,"usgs":false,"family":"Hodgins","given":"Gregory","email":"","middleInitial":"W. L.","affiliations":[{"id":7042,"text":"University of Arizona","active":true,"usgs":false}],"preferred":false,"id":478799,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Sandweiss, Daniel H.","contributorId":6356,"corporation":false,"usgs":true,"family":"Sandweiss","given":"Daniel H.","affiliations":[],"preferred":false,"id":478796,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Uceda-Castillo, Sandiago","contributorId":32427,"corporation":false,"usgs":true,"family":"Uceda-Castillo","given":"Sandiago","email":"","affiliations":[],"preferred":false,"id":478798,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Quilter, Jeffrey","contributorId":95361,"corporation":false,"usgs":true,"family":"Quilter","given":"Jeffrey","email":"","affiliations":[],"preferred":false,"id":478801,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70045517,"text":"70045517 - 2013 - Mapping polar bear maternal denning habitat in the National Petroleum Reserve -- Alaska with an IfSAR digital terrain model","interactions":[],"lastModifiedDate":"2020-12-18T19:45:23.718589","indexId":"70045517","displayToPublicDate":"2013-06-25T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":894,"text":"Arctic","active":true,"publicationSubtype":{"id":10}},"title":"Mapping polar bear maternal denning habitat in the National Petroleum Reserve -- Alaska with an IfSAR digital terrain model","docAbstract":"<p><span>The National Petroleum Reserve–Alaska (NPR-A) in northeastern Alaska provides winter maternal denning habitat for polar bears (</span><i>Ursus maritimus</i><span>) and also has high potential for recoverable hydrocarbons. Denning polar bears exposed to human activities may abandon their dens before their young are able to survive the severity of Arctic winter weather. To ensure that wintertime petroleum activities do not threaten polar bears, managers need to know the distribution of landscape features in which maternal dens are likely to occur. Here, we present a map of potential denning habitat within the NPR-A. We used a fine-grain digital elevation model derived from Interferometric Synthetic Aperture Radar (IfSAR) to generate a map of putative denning habitat. We then tested the map’s ability to identify polar bear denning habitat on the landscape. Our final map correctly identified 82% of denning habitat estimated to be within the NPR-A. Mapped denning habitat comprised 19.7 km2 (0.1% of the study area) and was widely dispersed. Though mapping denning habitat with IfSAR data was as effective as mapping with the photogrammetric methods used for other regions of the Alaskan Arctic coastal plain, the use of GIS to analyze IfSAR data allowed greater objectivity and flexibility with less manual labor. Analytical advantages and performance equivalent to that of manual cartographic methods suggest that the use of IfSAR data to identify polar bear maternal denning habitat is a better management tool in the NPR-A and wherever such data may be available.</span></p>","language":"English","publisher":"Arctic Institute of North America","doi":"10.14430/arctic4291","usgsCitation":"Durner, G.M., Simac, K.S., and Amstrup, S.C., 2013, Mapping polar bear maternal denning habitat in the National Petroleum Reserve -- Alaska with an IfSAR digital terrain model: Arctic, v. 66, no. 2, p. 139-245, https://doi.org/10.14430/arctic4291.","productDescription":"107 p.","startPage":"139","endPage":"245","ipdsId":"IP-042296","costCenters":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"links":[{"id":489049,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.14430/arctic4291","text":"Publisher Index Page"},{"id":438786,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7DJ5DXT","text":"USGS data release","linkHelpText":"Mapping data of Polar Bear (Ursus maritimus) maternal den habitat, Arctic Coastal Plain, Alaska"},{"id":381515,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alaska","otherGeospatial":"National Petroleum Reserve","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ 172.5,51.2 ], [ 172.5,71.4 ], [ -130.0,71.4 ], [ -130.0,51.2 ], [ 172.5,51.2 ] ] ] } } ] }","volume":"66","issue":"2","noUsgsAuthors":false,"publicationDate":"2013-06-05","publicationStatus":"PW","scienceBaseUri":"51caadcfe4b0d298e5434c0d","contributors":{"authors":[{"text":"Durner, George M. 0000-0002-3370-1191 gdurner@usgs.gov","orcid":"https://orcid.org/0000-0002-3370-1191","contributorId":3576,"corporation":false,"usgs":true,"family":"Durner","given":"George","email":"gdurner@usgs.gov","middleInitial":"M.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":477705,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Simac, Kristin S. 0000-0002-4072-1940 ksimac@usgs.gov","orcid":"https://orcid.org/0000-0002-4072-1940","contributorId":131096,"corporation":false,"usgs":true,"family":"Simac","given":"Kristin","email":"ksimac@usgs.gov","middleInitial":"S.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":477706,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Amstrup, Steven C.","contributorId":67034,"corporation":false,"usgs":false,"family":"Amstrup","given":"Steven","email":"","middleInitial":"C.","affiliations":[{"id":13182,"text":"Polar Bears International","active":true,"usgs":false}],"preferred":false,"id":477707,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70045390,"text":"70045390 - 2013 - Linking morphodynamic response with sediment mass balance on the Colorado River in Marble Canyon: issues of scale, geomorphic setting, and sampling design","interactions":[],"lastModifiedDate":"2018-03-21T15:45:54","indexId":"70045390","displayToPublicDate":"2013-06-24T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2318,"text":"Journal of Geophysical Research F: Earth Surface","active":true,"publicationSubtype":{"id":10}},"title":"Linking morphodynamic response with sediment mass balance on the Colorado River in Marble Canyon: issues of scale, geomorphic setting, and sampling design","docAbstract":"Measurements of morphologic change are often used to infer sediment mass balance. Such measurements may, however, result in gross errors when morphologic changes over short reaches are extrapolated to predict changes in sediment mass balance for long river segments. This issue is investigated by examination of morphologic change and sediment influx and efflux for a 100 km segment of the Colorado River in Grand Canyon, Arizona. For each of four monitoring intervals within a 7 year study period, the direction of sand-storage response within short morphologic monitoring reaches was consistent with the flux-based sand mass balance. Both budgeting methods indicate that sand storage was stable or increased during the 7 year period. Extrapolation of the morphologic measurements outside the monitoring reaches does not, however, provide a reasonable estimate of the magnitude of sand-storage change for the 100 km study area. Extrapolation results in large errors, because there is large local variation in site behavior driven by interactions between the flow and local bed topography. During the same flow regime and reach-average sediment supply, some locations accumulate sand while others evacuate sand. The interaction of local hydraulics with local channel geometry exerts more control on local morphodynamic response than sand supply over an encompassing river segment. Changes in the upstream supply of sand modify bed responses but typically do not completely offset the effect of local hydraulics. Thus, accurate sediment budgets for long river segments inferred from reach-scale morphologic measurements must incorporate the effect of local hydraulics in a sampling design or avoid extrapolation altogether.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Journal of Geophysical Research F: Earth Surface","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"AGU","doi":"10.1002/jgrf.20050","usgsCitation":"Grams, P.E., Topping, D.J., Schmidt, J.C., Hazel, J., and Kaplinski, M., 2013, Linking morphodynamic response with sediment mass balance on the Colorado River in Marble Canyon: issues of scale, geomorphic setting, and sampling design: Journal of Geophysical Research F: Earth Surface, v. 118, no. 2, p. 361-381, https://doi.org/10.1002/jgrf.20050.","productDescription":"21 p.","startPage":"361","endPage":"381","ipdsId":"IP-040352","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":473730,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/jgrf.20050","text":"Publisher Index Page"},{"id":274089,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1002/jgrf.20050"},{"id":274090,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arizona","otherGeospatial":"Marble Canyon","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -111.641405,36.808917 ], [ -111.641405,36.819093 ], [ -111.631371,36.819093 ], [ -111.631371,36.808917 ], [ -111.641405,36.808917 ] ] ] } } ] }","volume":"118","issue":"2","noUsgsAuthors":false,"publicationDate":"2013-04-04","publicationStatus":"PW","scienceBaseUri":"51c95c5ae4b0a50a6e8f57ac","contributors":{"authors":[{"text":"Grams, Paul E. 0000-0002-0873-0708 pgrams@usgs.gov","orcid":"https://orcid.org/0000-0002-0873-0708","contributorId":1830,"corporation":false,"usgs":true,"family":"Grams","given":"Paul","email":"pgrams@usgs.gov","middleInitial":"E.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":477332,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Topping, David J. 0000-0002-2104-4577 dtopping@usgs.gov","orcid":"https://orcid.org/0000-0002-2104-4577","contributorId":715,"corporation":false,"usgs":true,"family":"Topping","given":"David","email":"dtopping@usgs.gov","middleInitial":"J.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":false,"id":477334,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schmidt, John C. 0000-0002-2988-3869 jcschmidt@usgs.gov","orcid":"https://orcid.org/0000-0002-2988-3869","contributorId":1983,"corporation":false,"usgs":true,"family":"Schmidt","given":"John","email":"jcschmidt@usgs.gov","middleInitial":"C.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":477333,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hazel, Joseph E. Jr.","contributorId":91819,"corporation":false,"usgs":true,"family":"Hazel","given":"Joseph E.","suffix":"Jr.","affiliations":[],"preferred":false,"id":477336,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Kaplinski, Matt","contributorId":65817,"corporation":false,"usgs":true,"family":"Kaplinski","given":"Matt","affiliations":[],"preferred":false,"id":477335,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70046672,"text":"ofr20131123 - 2013 - Model documentation for relations between continuous real-time and discrete water-quality constituents in Cheney Reservoir near Cheney, Kansas, 2001--2009","interactions":[],"lastModifiedDate":"2013-06-24T08:57:51","indexId":"ofr20131123","displayToPublicDate":"2013-06-24T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-1123","title":"Model documentation for relations between continuous real-time and discrete water-quality constituents in Cheney Reservoir near Cheney, Kansas, 2001--2009","docAbstract":"Cheney Reservoir, located in south-central Kansas, is one of the primary water supplies for the city of Wichita, Kansas. The U.S. Geological Survey has operated a continuous real-time water-quality monitoring station in Cheney Reservoir since 2001; continuously measured physicochemical properties include specific conductance, pH, water temperature, dissolved oxygen, turbidity, fluorescence (wavelength range 650 to 700 nanometers; estimate of total chlorophyll), and reservoir elevation. Discrete water-quality samples were collected during 2001 through 2009 and analyzed for sediment, nutrients, taste-and-odor compounds, cyanotoxins, phytoplankton community composition, actinomycetes bacteria, and other water-quality measures. Regression models were developed to establish relations between discretely sampled constituent concentrations and continuously measured physicochemical properties to compute concentrations of constituents that are not easily measured in real time. The water-quality information in this report is important to the city of Wichita because it allows quantification and characterization of potential constituents of concern in Cheney Reservoir.\n\nThis report updates linear regression models published in 2006 that were based on data collected during 2001 through 2003. The update uses discrete and continuous data collected during May 2001 through December 2009. Updated models to compute dissolved solids, sodium, chloride, and suspended solids were similar to previously published models. However, several other updated models changed substantially from previously published models. In addition to updating relations that were previously developed, models also were developed for four new constituents, including magnesium, dissolved phosphorus, actinomycetes bacteria, and the cyanotoxin microcystin. In addition, a conversion factor of 0.74 was established to convert the Yellow Springs Instruments (YSI) model 6026 turbidity sensor measurements to the newer YSI model 6136 sensor at the Cheney Reservoir site.\n\nBecause a high percentage of geosmin and microcystin data were below analytical detection thresholds (censored data), multiple logistic regression was used to develop models that best explained the probability of geosmin and microcystin concentrations exceeding relevant thresholds. The geosmin and microcystin models are particularly important because geosmin is a taste-and-odor compound and microcystin is a cyanotoxin.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20131123","collaboration":"Prepared in cooperation with the City of Wichita, Kansas","usgsCitation":"Stone, M.L., Graham, J.L., and Gatotho, J.W., 2013, Model documentation for relations between continuous real-time and discrete water-quality constituents in Cheney Reservoir near Cheney, Kansas, 2001--2009: U.S. Geological Survey Open-File Report 2013-1123, x, 100 p., https://doi.org/10.3133/ofr20131123.","productDescription":"x, 100 p.","numberOfPages":"114","onlineOnly":"Y","additionalOnlineFiles":"N","temporalStart":"2001-01-01","temporalEnd":"2009-12-31","costCenters":[{"id":353,"text":"Kansas Water Science Center","active":false,"usgs":true}],"links":[{"id":274082,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr20131123.gif"},{"id":274080,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2013/1123/"},{"id":274081,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2013/1123/ofr2013-1123.pdf"}],"country":"United States","state":"Kansas","city":"Cheney","otherGeospatial":"Cheney Reservoir","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -97.904354,37.717691 ], [ -97.904354,37.824492 ], [ -97.774518,37.824492 ], [ -97.774518,37.717691 ], [ -97.904354,37.717691 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c95c5be4b0a50a6e8f57bc","contributors":{"authors":[{"text":"Stone, Mandy L. 0000-0002-6711-1536 mstone@usgs.gov","orcid":"https://orcid.org/0000-0002-6711-1536","contributorId":4409,"corporation":false,"usgs":true,"family":"Stone","given":"Mandy","email":"mstone@usgs.gov","middleInitial":"L.","affiliations":[{"id":353,"text":"Kansas Water Science Center","active":false,"usgs":true}],"preferred":true,"id":479980,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Graham, Jennifer L. 0000-0002-6420-9335 jlgraham@usgs.gov","orcid":"https://orcid.org/0000-0002-6420-9335","contributorId":1769,"corporation":false,"usgs":true,"family":"Graham","given":"Jennifer","email":"jlgraham@usgs.gov","middleInitial":"L.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479979,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Gatotho, Jackline W.","contributorId":76616,"corporation":false,"usgs":true,"family":"Gatotho","given":"Jackline","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":479981,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70045101,"text":"70045101 - 2013 - Location and timing of Asian carp spawning in the Lower Missouri River","interactions":[],"lastModifiedDate":"2017-05-24T12:48:17","indexId":"70045101","displayToPublicDate":"2013-06-24T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1528,"text":"Environmental Biology of Fishes","active":true,"publicationSubtype":{"id":10}},"title":"Location and timing of Asian carp spawning in the Lower Missouri River","docAbstract":"<p><span>We sampled for eggs of Asian carps, (bighead carp </span><i class=\"EmphasisTypeItalic \">Hypophthalmichthys nobilis,</i><span> silver carp </span><i class=\"EmphasisTypeItalic \">H. molitrix</i><span>, and grass carp </span><i class=\"EmphasisTypeItalic \">Ctenopharyngodon idella</i><span>) in 12 sites on the Lower Missouri River and in six tributaries from the months of May through July 2005 and May through June 2006 to examine the spatial and temporal dynamics of spawning activity. We categorized eggs into thirty developmental stages, but usually they could not be identified to species. We estimated spawning times and locations based on developmental stage, temperature dependent rate of development and water velocity. Spawning rate was higher in the daytime between 05:00 and 21:00&nbsp;h than at night. Spawning was not limited to a few sites, as has been reported for the Yangtze River, where these fishes are native, but more eggs were spawned in areas of high sinuosity. We employ a sediment transport model to estimate vertical egg concentration profiles and total egg fluxes during spawning periods on the Missouri River. We did not identify substantial spawning activity within tributaries or at tributary confluences examined in this study.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s10641-012-0052-z","usgsCitation":"Deters, J.E., Chapman, D., and McElroy, B., 2013, Location and timing of Asian carp spawning in the Lower Missouri River: Environmental Biology of Fishes, v. 96, no. 5, p. 617-629, https://doi.org/10.1007/s10641-012-0052-z.","productDescription":"13 p.","startPage":"617","endPage":"629","ipdsId":"IP-026008","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":274094,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":274093,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s10641-012-0052-z"}],"country":"United States","otherGeospatial":"Missouri River","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -96.63,38.44 ], [ -96.63,42.6 ], [ -90.06,42.6 ], [ -90.06,38.44 ], [ -96.63,38.44 ] ] ] } } ] }","volume":"96","issue":"5","noUsgsAuthors":false,"publicationDate":"2012-07-15","publicationStatus":"PW","scienceBaseUri":"51c95c5ae4b0a50a6e8f57b0","contributors":{"authors":[{"text":"Deters, Joseph E. jdeters@usgs.gov","contributorId":3240,"corporation":false,"usgs":true,"family":"Deters","given":"Joseph","email":"jdeters@usgs.gov","middleInitial":"E.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":476796,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Chapman, Duane 0000-0002-1086-8853 dchapman@usgs.gov","orcid":"https://orcid.org/0000-0002-1086-8853","contributorId":1291,"corporation":false,"usgs":true,"family":"Chapman","given":"Duane","email":"dchapman@usgs.gov","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true},{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":476795,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"McElroy, Brandon 0000-0002-9683-4282","orcid":"https://orcid.org/0000-0002-9683-4282","contributorId":90453,"corporation":false,"usgs":true,"family":"McElroy","given":"Brandon","email":"","affiliations":[],"preferred":false,"id":476797,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70044368,"text":"70044368 - 2013 - Finite-fault source inversion using teleseismic <i>P</i> waves: Simple parameterization and rapid analysis","interactions":[],"lastModifiedDate":"2016-01-29T11:27:29","indexId":"70044368","displayToPublicDate":"2013-06-21T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1135,"text":"Bulletin of the Seismological Society of America","onlineIssn":"1943-3573","printIssn":"0037-1106","active":true,"publicationSubtype":{"id":10}},"title":"Finite-fault source inversion using teleseismic <i>P</i> waves: Simple parameterization and rapid analysis","docAbstract":"<p>We examine the ability of teleseismic <i>P</i> waves to provide a timely image of the rupture history for large earthquakes using a simple, 2D finite‐fault source parameterization. We analyze the broadband displacement waveforms recorded for the 2010 <i>M</i><sub>w</sub>&sim;7 Darfield (New Zealand) and El Mayor‐Cucapah (Baja California) earthquakes using a single planar fault with a fixed rake. Both of these earthquakes were observed to have complicated fault geometries following detailed source studies conducted by other investigators using various data types. Our kinematic, finite‐fault analysis of the events yields rupture models that similarly identify the principal areas of large coseismic slip along the fault. The results also indicate that the amount of stabilization required to spatially smooth the slip across the fault and minimize the seismic moment is related to the amplitudes of the observed <i>P</i> waveforms and can be estimated from the absolute values of the elements of the coefficient matrix. This empirical relationship persists for earthquakes of different magnitudes and is consistent with the stabilization constraint obtained from the L‐curve in Tikhonov regularization. We use the relation to estimate the smoothing parameters for the 2011 <i>M</i><sub>w</sub> 7.1 East Turkey, 2012 <i>M</i><sub>w</sub> 8.6 Northern Sumatra, and 2011 <i>M</i><sub>w</sub> 9.0 Tohoku, Japan, earthquakes and invert the teleseismic <i>P</i> waves in a single step to recover timely, preliminary slip models that identify the principal source features observed in finite‐fault solutions obtained by the U.S. Geological Survey National Earthquake Information Center (USGS/NEIC) from the analysis of body‐ and surface‐wave data. These results indicate that smoothing constraints can be estimated <i>a priori</i> to derive a preliminary, first‐order image of the coseismic slip using teleseismic records.</p>","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Bulletin of the Seismological Society of America","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Seismological Society of America","publisherLocation":"Stanford","doi":"10.1785/0120120069","usgsCitation":"Mendoza, C., and Hartzell, S., 2013, Finite-fault source inversion using teleseismic <i>P</i> waves: Simple parameterization and rapid analysis: Bulletin of the Seismological Society of America, v. 103, no. 2A, p. 834-844, https://doi.org/10.1785/0120120069.","productDescription":"11 p.","startPage":"834","endPage":"844","numberOfPages":"11","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-038615","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":274075,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Mexico, New Zealand","otherGeospatial":"Darfield, El Mayor-Cucapah","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"MultiPolygon\",\"coordinates\":[[[[-97.14001,25.87],[-97.52807,24.99214],[-97.70295,24.27234],[-97.77604,22.93258],[-97.87237,22.44421],[-97.69904,21.89869],[-97.38896,21.41102],[-97.18933,20.63543],[-96.52558,19.89093],[-96.29213,19.32037],[-95.90088,18.82802],[-94.83906,18.56272],[-94.42573,18.14437],[-93.54865,18.42384],[-92.78611,18.52484],[-92.03735,18.70457],[-91.4079,18.87608],[-90.77187,19.28412],[-90.53359,19.86742],[-90.45148,20.70752],[-90.27862,20.99986],[-89.60132,21.26173],[-88.54387,21.49368],[-87.65842,21.45885],[-87.05189,21.54354],[-86.81198,21.33151],[-86.84591,20.84986],[-87.38329,20.2554],[-87.62105,19.64655],[-87.43675,19.4724],[-87.58656,19.04013],[-87.83719,18.25982],[-88.09066,18.51665],[-88.30003,18.49998],[-88.49012,18.48683],[-88.84834,17.8832],[-89.02986,18.00151],[-89.15091,17.95547],[-89.14308,17.80832],[-90.06793,17.81933],[-91.00152,17.81759],[-91.00227,17.25466],[-91.45392,17.25218],[-91.08167,16.91848],[-90.71182,16.68748],[-90.60085,16.47078],[-90.43887,16.41011],[-90.46447,16.06956],[-91.74796,16.06656],[-92.22925,15.25145],[-92.08722,15.06458],[-92.20323,14.8301],[-92.22775,14.53883],[-93.35946,15.61543],[-93.87517,15.94016],[-94.69166,16.20098],[-95.25023,16.12832],[-96.05338,15.75209],[-96.55743,15.65352],[-97.26359,15.91706],[-98.01303,16.10731],[-98.94768,16.56604],[-99.6974,16.70616],[-100.8295,17.17107],[-101.66609,17.64903],[-101.91853,17.91609],[-102.47813,17.97575],[-103.50099,18.29229],[-103.91753,18.74857],[-104.99201,19.31613],[-105.49304,19.94677],[-105.7314,20.4341],[-105.39777,20.53172],[-105.50066,20.8169],[-105.27075,21.07628],[-105.26582,21.4221],[-105.60316,21.87115],[-105.69341,22.26908],[-106.02872,22.77375],[-106.90998,23.76777],[-107.91545,24.54892],[-108.4019,25.17231],[-109.2602,25.58061],[-109.44409,25.82488],[-109.29164,26.44293],[-109.80146,26.67618],[-110.39173,27.16211],[-110.64102,27.85988],[-111.17892,27.94124],[-111.75961,28.46795],[-112.22823,28.95441],[-112.27182,29.26684],[-112.80959,30.02111],[-113.16381,30.78688],[-113.14867,31.17097],[-113.87188,31.56761],[-114.20574,31.52405],[-114.77645,31.79953],[-114.9367,31.39348],[-114.77123,30.91362],[-114.6739,30.16268],[-114.33097,29.75043],[-113.58888,29.06161],[-113.42405,28.82617],[-113.27197,28.75478],[-113.14004,28.41129],[-112.9623,28.42519],[-112.76159,27.78022],[-112.45791,27.52581],[-112.24495,27.17173],[-111.61649,26.66282],[-111.28467,25.73259],[-110.98782,25.29461],[-110.71001,24.826],[-110.65505,24.29859],[-110.17286,24.26555],[-109.77185,23.81118],[-109.4091,23.36467],[-109.43339,23.18559],[-109.85422,22.81827],[-110.03139,22.82308],[-110.29507,23.43097],[-110.9495,24.00096],[-111.67057,24.48442],[-112.18204,24.73841],[-112.14899,25.47013],[-112.30071,26.012],[-112.7773,26.32196],[-113.46467,26.76819],[-113.59673,26.63946],[-113.84894,26.90006],[-114.46575,27.14209],[-115.05514,27.72273],[-114.98225,27.7982],[-114.57037,27.74149],[-114.19933,28.115],[-114.16202,28.56611],[-114.93184,29.27948],[-115.51865,29.55636],[-115.88737,30.18079],[-116.25835,30.83646],[-116.72153,31.63574],[-117.12776,32.53534],[-115.99135,32.61239],[-114.72139,32.72083],[-114.815,32.52528],[-113.30498,32.03914],[-111.02361,31.33472],[-109.035,31.34194],[-108.24194,31.34222],[-108.24,31.75485],[-106.50759,31.75452],[-106.1429,31.39995],[-105.63159,31.08383],[-105.03737,30.64402],[-104.70575,30.12173],[-104.45697,29.57196],[-103.94,29.27],[-103.11,28.97],[-102.48,29.76],[-101.6624,29.7793],[-100.9576,29.38071],[-100.45584,28.69612],[-100.11,28.11],[-99.52,27.54],[-99.3,26.84],[-99.02,26.37],[-98.24,26.06],[-97.53,25.84],[-97.14001,25.87]]],[[[173.02037,-40.91905],[173.24723,-41.332],[173.95841,-40.9267],[174.24759,-41.34916],[174.24852,-41.77001],[173.87645,-42.23318],[173.22274,-42.97004],[172.71125,-43.37229],[173.08011,-43.85334],[172.30858,-43.86569],[171.45293,-44.24252],[171.18514,-44.8971],[170.6167,-45.90893],[169.83142,-46.35577],[169.33233,-46.64124],[168.41135,-46.61994],[167.76374,-46.2902],[166.67689,-46.21992],[166.50914,-45.8527],[167.04642,-45.11094],[168.30376,-44.12397],[168.94941,-43.93582],[169.66781,-43.55533],[170.52492,-43.03169],[171.12509,-42.51275],[171.56971,-41.76742],[171.94871,-41.51442],[172.09723,-40.9561],[172.79858,-40.49396],[173.02037,-40.91905]]],[[[174.61201,-36.1564],[175.33662,-37.2091],[175.3576,-36.52619],[175.80889,-36.79894],[175.95849,-37.55538],[176.7632,-37.88125],[177.43881,-37.96125],[178.01035,-37.57982],[178.51709,-37.69537],[178.27473,-38.58281],[177.97046,-39.16634],[177.20699,-39.14578],[176.93998,-39.44974],[177.03295,-39.87994],[176.88582,-40.06598],[176.50802,-40.60481],[176.01244,-41.28962],[175.23957,-41.68831],[175.0679,-41.42589],[174.65097,-41.28182],[175.22763,-40.45924],[174.90016,-39.90893],[173.82405,-39.50885],[173.85226,-39.1466],[174.5748,-38.79768],[174.74347,-38.02781],[174.69702,-37.38113],[174.29203,-36.71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C.","contributorId":82059,"corporation":false,"usgs":true,"family":"Mendoza","given":"C.","email":"","affiliations":[],"preferred":false,"id":475383,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hartzell, S.","contributorId":12603,"corporation":false,"usgs":true,"family":"Hartzell","given":"S.","email":"","affiliations":[],"preferred":false,"id":475382,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70040851,"text":"70040851 - 2013 - High renesting rates in arctic-breeding Dunlin (<i>Calidris alpina</i>): A clutch-removal experiment","interactions":[],"lastModifiedDate":"2017-05-07T10:27:42","indexId":"70040851","displayToPublicDate":"2013-06-21T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3544,"text":"The Auk","onlineIssn":"1938-4254","printIssn":"0004-8038","active":true,"publicationSubtype":{"id":10}},"title":"High renesting rates in arctic-breeding Dunlin (<i>Calidris alpina</i>): A clutch-removal experiment","docAbstract":"The propensity to replace a clutch is a complex component of avian reproduction and poorly understood. We experimentally removed clutches from an Arctic-breeding shorebird, the Dunlin (Calidris alpina arcticola), during early and late stages of incubation to investigate replacement clutch rates, renesting interval, and mate and site fidelity between nesting attempts. In contrast to other Arctic studies, we documented renesting by radiotracking individuals to find replacement clutches. We also examined clutch size and mean egg volume to document changes in individual females’ investment in initial and replacement clutches. Finally, we examined the influence of adult body mass, clutch volume, dates of clutch initiation and nest loss, and year on the propensity to renest. We found high (82–95%) and moderate (35–50%) rates of renesting for early and late incubation treatments. Renesting intervals averaged 4.7–6.8 days and were not different for clutches removed early or late in incubation. Most pairs remained together for renesting attempts. Larger females were more likely to replace a clutch; female body mass was the most important parameter predicting propensity to renest. Clutches lost later in the season were less likely to be replaced. We present evidence that renesting is more common in Arctic-breeding shorebirds than was previously thought, and suggest that renesting is constrained by energetic and temporal factors as well as mate availability. Obtaining rates of renesting in species breeding at different latitudes will help determine when this behavior is likely to occur; such information is necessary for demographic models that include individual and population-level fecundity estimates.","language":"English","publisher":"American Ornithological Society","doi":"10.1525/auk.2013.12052","usgsCitation":"Gates, H., Lanctot, R.B., and Powell, A., 2013, High renesting rates in arctic-breeding Dunlin (<i>Calidris alpina</i>): A clutch-removal experiment: The Auk, v. 130, no. 2, p. 372-380, https://doi.org/10.1525/auk.2013.12052.","productDescription":"9 p.","startPage":"372","endPage":"380","ipdsId":"IP-037244","costCenters":[{"id":108,"text":"Alaska Cooperative Fish and Wildlife Research Unit","active":false,"usgs":true}],"links":[{"id":473734,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1525/auk.2013.12052","text":"Publisher Index Page"},{"id":274069,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Arctic","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -180.0,69.9 ], [ -180.0,90.0 ], [ 180.0,90.0 ], [ 180.0,69.9 ], [ -180.0,69.9 ] ] ] } } ] }","volume":"130","issue":"2","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c567d4e4b0c89b8f120e0f","contributors":{"authors":[{"text":"Gates, H. River","contributorId":84256,"corporation":false,"usgs":true,"family":"Gates","given":"H. River","affiliations":[],"preferred":false,"id":469135,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Lanctot, Richard B.","contributorId":31894,"corporation":false,"usgs":true,"family":"Lanctot","given":"Richard","email":"","middleInitial":"B.","affiliations":[{"id":17786,"text":"Carleton University","active":true,"usgs":false},{"id":135,"text":"Biological Resources Division","active":false,"usgs":true},{"id":7029,"text":"Queen's University, Kingston, Ontario, Canada","active":true,"usgs":false},{"id":6987,"text":"U.S. Fish and Wildlife Sevice","active":true,"usgs":false}],"preferred":false,"id":469134,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Powell, Abby N. abby_powell@usgs.gov","contributorId":2534,"corporation":false,"usgs":false,"family":"Powell","given":"Abby N.","email":"abby_powell@usgs.gov","affiliations":[{"id":13117,"text":"Institute of Arctic Biology, University of Alaska Fairbanks","active":true,"usgs":false}],"preferred":false,"id":469133,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70040016,"text":"70040016 - 2013 - Estimating suitable environments for invasive plant species across large landscapes: a remote sensing strategy using Landsat 7 ETM+","interactions":[],"lastModifiedDate":"2020-09-11T17:36:23.36493","indexId":"70040016","displayToPublicDate":"2013-06-21T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2030,"text":"International Journal of Biodiversity and Conservation","active":true,"publicationSubtype":{"id":10}},"title":"Estimating suitable environments for invasive plant species across large landscapes: a remote sensing strategy using Landsat 7 ETM+","docAbstract":"<p><span>The key to reducing ecological and economic damage caused by invasive plant species is to locate and eradicate new invasions before they threaten native biodiversity and ecological processes. We used Landsat Enhanced Thematic Mapper Plus imagery to estimate suitable environments for four invasive plants in Big Bend National Park, southwest Texas, using a presence-only modeling approach. Giant reed (</span><i>Arundo donax</i><span>), Lehmann lovegrass (</span><i>Eragrostis lehmanniana</i><span>), horehound (</span><i>Marrubium vulgare</i><span>) and buffelgrass (</span><i>Pennisteum ciliare</i><span>) were selected for remote sensing spatial analyses. Multiple dates/seasons of imagery were used to account for habitat conditions within the study area and to capture phenological differences among targeted species and the surrounding landscape. Individual species models had high (0.91 to 0.99) discriminative ability to differentiate invasive plant suitable environments from random background locations. Average test area under the receiver operating characteristic curve (AUC) ranged from 0.91 to 0.99, indicating that plant predictive models exhibited high discriminative ability to differentiate suitable environments for invasive plant species from random locations. Omission rates ranged from &lt;1.0 to 18%. We demonstrated that useful models estimating suitable environments for invasive plants may be created with &lt;50 occurrence locations and that reliable modeling using presence-only datasets can be powerful tools for land managers.</span></p>","language":"English","publisher":"Academic Journals","doi":"10.5897/IJBC12.057","usgsCitation":"Young, K.E., Abbott, L.B., Caldwell, C.A., and Schrader, T.S., 2013, Estimating suitable environments for invasive plant species across large landscapes: a remote sensing strategy using Landsat 7 ETM+: International Journal of Biodiversity and Conservation, v. 5, no. 3, p. 122-134, https://doi.org/10.5897/IJBC12.057.","productDescription":"13 p.","startPage":"122","endPage":"134","ipdsId":"IP-041046","costCenters":[{"id":471,"text":"New Mexico Cooperative Fish and Wildlife Research Unit","active":false,"usgs":true}],"links":[{"id":274063,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":378343,"rank":2,"type":{"id":15,"text":"Index Page"},"url":"https://academicjournals.org/journal/IJBC/article-stat/73700A410650"}],"country":"United States","state":"Texas","otherGeospatial":"Big Bend National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -104.556884765625,\n              28.98892237190413\n            ],\n            [\n              -102.7001953125,\n              28.98892237190413\n            ],\n            [\n              -102.7001953125,\n              29.935895213372444\n            ],\n            [\n              -104.556884765625,\n              29.935895213372444\n            ],\n            [\n              -104.556884765625,\n              28.98892237190413\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"5","issue":"3","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c567d3e4b0c89b8f120dff","contributors":{"authors":[{"text":"Young, Kendal E.","contributorId":76212,"corporation":false,"usgs":true,"family":"Young","given":"Kendal","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":467484,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Abbott, Laurie B.","contributorId":57352,"corporation":false,"usgs":true,"family":"Abbott","given":"Laurie","email":"","middleInitial":"B.","affiliations":[],"preferred":false,"id":467483,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Caldwell, Colleen A. 0000-0002-4730-4867 ccaldwel@usgs.gov","orcid":"https://orcid.org/0000-0002-4730-4867","contributorId":3050,"corporation":false,"usgs":true,"family":"Caldwell","given":"Colleen","email":"ccaldwel@usgs.gov","middleInitial":"A.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":467481,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Schrader, T. Scott","contributorId":43260,"corporation":false,"usgs":true,"family":"Schrader","given":"T.","email":"","middleInitial":"Scott","affiliations":[],"preferred":false,"id":467482,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70044168,"text":"70044168 - 2013 - Late Pleistocene and Holocene uplift history of Cyprus: implications for active tectonics along the southern margin of the Anatolian microplate","interactions":[],"lastModifiedDate":"2013-07-15T09:50:13","indexId":"70044168","displayToPublicDate":"2013-06-21T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1792,"text":"Geological Society, London, Special Publications: Geological Development of Anatolia and the Easternmost Mediterranean Region","active":true,"publicationSubtype":{"id":10}},"seriesNumber":"372","title":"Late Pleistocene and Holocene uplift history of Cyprus: implications for active tectonics along the southern margin of the Anatolian microplate","docAbstract":"The nature of the southern margin of the Anatolian microplate during the Neogene is complex, controversial and fundamental in understanding active plate-margin tectonics and natural hazards in the Eastern Mediterranean region. Our investigation provides new insights into the Late Pleistocene uplift history of Cyprus and the Troodos Ophiolite. We provide isotopic (<sup>14</sup>C) and radiogenic (luminescence) dates of outcropping marine sediments in eastern Cyprus that identify periods of deposition during marine isotope stages (MIS) 3, 4, 5 and 6. Past sea-levels indicated by these deposits are c. 95±25 m higher in elevation than estimates of worldwide eustatic sea-level. An uplift rate of c. 1.8 mm/year and possibly as much as c. 4.1 mm/year in the past c. 26–40 ka is indicated. Holocene marine deposits also occur at elevations higher than those expected for past SL and suggest uplift rates of c. 1.2–2.1 mm/year. MIS-3 marine deposits that crop out in southern and western Cyprus indicate uniform island-wide uplift. We propose a model of tectonic wedging at a plate-bounding restraining bend as a mechanism for Late Pleistocene to Holocene uplift of Cyprus; uplift is accommodated by deformation and seismicity along the margins of the Troodos Ophiolite and re-activation of its low-angle, basal shear zone.","largerWorkType":{"id":18,"text":"Report"},"largerWorkTitle":"Geological Society, London, Special Publications: Geological Development of Anatolia and the Easternmost Mediterranean Region","largerWorkSubtype":{"id":3,"text":"Organization Series"},"language":"English","publisher":"Geological Society of London","doi":"10.1144/SP372.3","usgsCitation":"Harrison, R., Tsiolakis, E., Stone, B., Lord, A., McGeehin, J., Mahan, S., and Chirico, P., 2013, Late Pleistocene and Holocene uplift history of Cyprus: implications for active tectonics along the southern margin of the Anatolian microplate: Geological Society, London, Special Publications: Geological Development of Anatolia and the Easternmost Mediterranean Region, v. 372, p. 561-584, https://doi.org/10.1144/SP372.3.","productDescription":"24 p.","startPage":"561","endPage":"584","ipdsId":"IP-030588","costCenters":[{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true}],"links":[{"id":473733,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"text":"External Repository"},{"id":274058,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":274057,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1144/SP372.3"}],"country":"Cyprus","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ 32.2687,34.6323 ], [ 32.2687,35.7072 ], [ 34.6045,35.7072 ], [ 34.6045,34.6323 ], [ 32.2687,34.6323 ] ] ] } } ] }","volume":"372","noUsgsAuthors":false,"publicationDate":"2012-08-22","publicationStatus":"PW","scienceBaseUri":"51c567d5e4b0c89b8f120e13","contributors":{"authors":[{"text":"Harrison, R.W.","contributorId":32188,"corporation":false,"usgs":true,"family":"Harrison","given":"R.W.","affiliations":[],"preferred":false,"id":474966,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Tsiolakis, E.","contributorId":26210,"corporation":false,"usgs":true,"family":"Tsiolakis","given":"E.","affiliations":[],"preferred":false,"id":474964,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stone, B. D. 0000-0001-6092-0798","orcid":"https://orcid.org/0000-0001-6092-0798","contributorId":50919,"corporation":false,"usgs":true,"family":"Stone","given":"B. D.","affiliations":[],"preferred":false,"id":474968,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lord, A.","contributorId":31291,"corporation":false,"usgs":true,"family":"Lord","given":"A.","email":"","affiliations":[],"preferred":false,"id":474965,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"McGeehin, J. P. 0000-0002-5320-6091","orcid":"https://orcid.org/0000-0002-5320-6091","contributorId":48593,"corporation":false,"usgs":true,"family":"McGeehin","given":"J. P.","affiliations":[],"preferred":false,"id":474967,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Mahan, S. A. 0000-0001-5214-7774","orcid":"https://orcid.org/0000-0001-5214-7774","contributorId":94333,"corporation":false,"usgs":true,"family":"Mahan","given":"S. A.","affiliations":[],"preferred":false,"id":474969,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Chirico, P.","contributorId":25847,"corporation":false,"usgs":true,"family":"Chirico","given":"P.","affiliations":[],"preferred":false,"id":474963,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70046667,"text":"ofr20131050 - 2013 - Characterization of major lithologic units underlying the lower American River using water-borne continuous resistivity profiling, Sacramento, California, June 2008","interactions":[],"lastModifiedDate":"2013-06-20T08:43:21","indexId":"ofr20131050","displayToPublicDate":"2013-06-20T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-1050","title":"Characterization of major lithologic units underlying the lower American River using water-borne continuous resistivity profiling, Sacramento, California, June 2008","docAbstract":"The levee system of the lower American River in Sacramento, California, is situated above a mixed lithology of alluvial deposits that range from clay to gravel. In addition, sand deposits related to hydraulic mining activities underlie the floodplain and are preferentially prone to scour during high-flow events. In contrast, sections of the American River channel have been observed to be scour resistant. In this study, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, explores the resistivity structure of the American River channel to characterize the extent and thickness of lithologic units that may impact the scour potential of the area. Likely lithologic structures are interpreted, but these interpretations are non-unique and cannot be directly related to scour potential. Additional geotechnical data would provide insightful data on the scour potential of certain lithologic units. Additional interpretation of the resistivity data with respect to these results may improve interpretations of lithology and scour potential throughout the American River channel and floodplain.\n\nResistivity data were collected in three profiles along the American River using a water-borne continuous resistivity profiling technique. After processing and modeling these data, inverted resistivity profiles were used to make interpretations about the extent and thickness of possible lithologic units. In general, an intermittent high-resistivity layer likely indicative of sand or gravel deposits extends to a depth of around 30 feet (9 meters) and is underlain by a consistent low-resistivity layer that likely indicates a high-clay content unit that extends below the depth of investigation (60 feet or 18 meters). Immediately upstream of the Watt Avenue Bridge, the high-resistivity layer is absent, and the low-resistivity layer extends to the surface where a scour-resistant layer has been previously observed in the river bed.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20131050","collaboration":"Prepared in cooperation with the U.S. Army Corps of Engineers Sacramento District","usgsCitation":"Ball, L.B., and Teeple, A., 2013, Characterization of major lithologic units underlying the lower American River using water-borne continuous resistivity profiling, Sacramento, California, June 2008: U.S. Geological Survey Open-File Report 2013-1050, iv, 13 p.; Maps: 5 Sheets: 45 x 22 inches, https://doi.org/10.3133/ofr20131050.","productDescription":"iv, 13 p.; Maps: 5 Sheets: 45 x 22 inches","numberOfPages":"17","onlineOnly":"Y","additionalOnlineFiles":"Y","temporalStart":"2008-06-01","temporalEnd":"2008-07-01","costCenters":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"links":[{"id":274013,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr20131050.gif"},{"id":274006,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2013/1050/"},{"id":274007,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2013/1050/OF13-1050.pdf"},{"id":274008,"type":{"id":17,"text":"Plate"},"url":"https://pubs.usgs.gov/of/2013/1050/plate1.pdf"},{"id":274009,"type":{"id":17,"text":"Plate"},"url":"https://pubs.usgs.gov/of/2013/1050/plate2.pdf"},{"id":274010,"type":{"id":17,"text":"Plate"},"url":"https://pubs.usgs.gov/of/2013/1050/plate3.pdf"},{"id":274011,"type":{"id":17,"text":"Plate"},"url":"https://pubs.usgs.gov/of/2013/1050/plate4.pdf"},{"id":274012,"type":{"id":17,"text":"Plate"},"url":"https://pubs.usgs.gov/of/2013/1050/plate5.pdf"}],"country":"United States","state":"California","city":"Sacramento","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -121.433333,38.55 ], [ -121.433333,38.591667 ], [ -121.333333,38.591667 ], [ -121.333333,38.55 ], [ -121.433333,38.55 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c42210e4b03c77dce65a03","contributors":{"authors":[{"text":"Ball, Lyndsay B. 0000-0002-6356-4693 lbball@usgs.gov","orcid":"https://orcid.org/0000-0002-6356-4693","contributorId":1138,"corporation":false,"usgs":true,"family":"Ball","given":"Lyndsay","email":"lbball@usgs.gov","middleInitial":"B.","affiliations":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":479958,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Teeple, Andrew   0000-0003-1781-8354 apteeple@usgs.gov","orcid":"https://orcid.org/0000-0003-1781-8354","contributorId":1399,"corporation":false,"usgs":true,"family":"Teeple","given":"Andrew  ","email":"apteeple@usgs.gov","affiliations":[{"id":583,"text":"Texas Water Science Center","active":true,"usgs":true}],"preferred":false,"id":479959,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70046165,"text":"70046165 - 2013 - Emergence flux declines disproportionately to larval density along a stream metals gradient","interactions":[],"lastModifiedDate":"2013-08-12T09:33:00","indexId":"70046165","displayToPublicDate":"2013-06-20T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1565,"text":"Environmental Science & Technology","onlineIssn":"1520-5851","printIssn":"0013-936X","active":true,"publicationSubtype":{"id":10}},"title":"Emergence flux declines disproportionately to larval density along a stream metals gradient","docAbstract":"Effects of contaminants on adult aquatic insect emergence are less well understood than effects on insect larvae. We compared responses of larval density and adult emergence along a metal contamination gradient. Nonlinear threshold responses were generally observed for larvae and emergers. Larval densities decreased significantly at low metal concentrations but precipitously at concentrations of metal mixtures above aquatic life criteria (Cumulative Criterion Accumulation Ratio (CCAR) ≥ 1). In contrast, adult emergence declined precipitously at low metal concentrations (CCAR ≤ 1), followed by a modest decline above this threshold. Adult emergence was a more sensitive indicator of the effect of low metals concentrations on aquatic insect communities compared to larvae, presumably because emergence is limited by a combination of larval survival and other factors limiting successful emergence. Thus effects of exposure to larvae are not manifest until later in life (during metamorphosis and emergence). This loss in emergence reduces prey subsidies to riparian communities at concentrations considered safe for aquatic life. Our results also challenge the widely held assumption that adult emergence is a constant proportion of larval densities in all streams.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Environmental Science and Technology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"ACS Publications","doi":"10.1021/es3051857","usgsCitation":"Schmidt, T., Kraus, J.M., Walters, D., and Wanty, R.B., 2013, Emergence flux declines disproportionately to larval density along a stream metals gradient: Environmental Science & Technology, v. 47, no. 15, p. 8784-8792, https://doi.org/10.1021/es3051857.","productDescription":"9 p.","startPage":"8784","endPage":"8792","ipdsId":"IP-045570","costCenters":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"links":[{"id":274042,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":274041,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1021/es3051857"}],"volume":"47","issue":"15","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c42211e4b03c77dce65a0f","contributors":{"authors":[{"text":"Schmidt, Travis S. 0000-0003-1400-0637 tschmidt@usgs.gov","orcid":"https://orcid.org/0000-0003-1400-0637","contributorId":1300,"corporation":false,"usgs":true,"family":"Schmidt","given":"Travis S.","email":"tschmidt@usgs.gov","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true},{"id":685,"text":"Wyoming-Montana Water Science Center","active":false,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":479077,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kraus, Johanna M. 0000-0002-9513-4129 jkraus@usgs.gov","orcid":"https://orcid.org/0000-0002-9513-4129","contributorId":4834,"corporation":false,"usgs":true,"family":"Kraus","given":"Johanna","email":"jkraus@usgs.gov","middleInitial":"M.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":479078,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Walters, David M.","contributorId":76590,"corporation":false,"usgs":true,"family":"Walters","given":"David M.","affiliations":[],"preferred":false,"id":479079,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Wanty, Richard B. 0000-0002-2063-6423 rwanty@usgs.gov","orcid":"https://orcid.org/0000-0002-2063-6423","contributorId":443,"corporation":false,"usgs":true,"family":"Wanty","given":"Richard","email":"rwanty@usgs.gov","middleInitial":"B.","affiliations":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":479076,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70046217,"text":"70046217 - 2013 - Linking phenology and biomass productivity in South Dakota mixed-grass prairie","interactions":[],"lastModifiedDate":"2013-10-23T13:39:21","indexId":"70046217","displayToPublicDate":"2013-06-19T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3228,"text":"Rangeland Ecology and Management","onlineIssn":"1551-5028","printIssn":"1550-7424","active":true,"publicationSubtype":{"id":10}},"title":"Linking phenology and biomass productivity in South Dakota mixed-grass prairie","docAbstract":"Assessing the health of rangeland ecosystems based solely on annual biomass production does not fully describe plant community condition; the phenology of production can provide inferences on species composition, successional stage, and grazing impacts. We evaluate the productivity and phenology of western South Dakota mixed-grass prairie using 2000 to 2008 Moderate Resolution Imaging Spectrometer (MODIS) normalized difference vegetation index (NDVI) satellite imagery at 250 m spatial resolution. Growing season NDVI images were integrated weekly to produce time-integrated NDVI (TIN), a proxy of total annual biomass production, and integrated seasonally to represent annual production by cool (C3) and warm (C4) season species. Additionally, a variety of phenological indicators including cool season percentage of TIN were derived from the seasonal profiles of NDVI. Cool season percentage and TIN were combined to generate vegetation classes, which served as proxies of plant community condition. TIN decreased with precipitation from east to west across the study area. Alternatively, cool season percentage increased from east to west, following patterns related to the reliability (interannual coefficient of variation [CV]) and quantity of mid-summer precipitation. Cool season TIN averaged 76.8% of total. Seasonal accumulation of TIN corresponded closely (R2 > 0.90) to that of gross photosynthesis data from a carbon flux tower. Field-collected biomass and community composition data were strongly related to the TIN and cool season percentage products. The patterns of vegetation classes were responsive to topographic, edaphic, and land management influences on plant communities. Accurate maps of biomass production, cool/warm season composition, and vegetation classes can improve the efficiency of land management by adjusting stocking rates and season of use to maximize rangeland productivity and achieve conservation objectives. Further, our results clarify the spatial and temporal dynamics of phenology and TIN in mixed-grass prairie.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Rangeland Ecology and Management","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Society for Range Management","doi":"10.2111/REM-D-12-00083.1","usgsCitation":"Rigge, M., Smart, A., Wylie, B., Gilmanov, T., and Johnson, P., 2013, Linking phenology and biomass productivity in South Dakota mixed-grass prairie: Rangeland Ecology and Management, v. 66, no. 5, p. 579-587, https://doi.org/10.2111/REM-D-12-00083.1.","productDescription":"8 p.","startPage":"579","endPage":"587","numberOfPages":"8","ipdsId":"IP-039037","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":473739,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://hdl.handle.net/10150/642745","text":"External Repository"},{"id":274001,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":274000,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.2111/REM-D-12-00083.1"}],"country":"United States","state":"South Dakota","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -104.06,42.48 ], [ -104.06,45.95 ], [ -96.44,45.95 ], [ -96.44,42.48 ], [ -104.06,42.48 ] ] ] } } ] }","volume":"66","issue":"5","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c2c4d5e4b08857aac42380","contributors":{"authors":[{"text":"Rigge, Matthew 0000-0003-4471-8009","orcid":"https://orcid.org/0000-0003-4471-8009","contributorId":19457,"corporation":false,"usgs":true,"family":"Rigge","given":"Matthew","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":false,"id":479196,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Smart, Alexander","contributorId":24262,"corporation":false,"usgs":true,"family":"Smart","given":"Alexander","affiliations":[],"preferred":false,"id":479197,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Wylie, Bruce 0000-0002-7374-1083","orcid":"https://orcid.org/0000-0002-7374-1083","contributorId":107996,"corporation":false,"usgs":true,"family":"Wylie","given":"Bruce","affiliations":[],"preferred":false,"id":479198,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Gilmanov, Tagir","contributorId":6351,"corporation":false,"usgs":true,"family":"Gilmanov","given":"Tagir","affiliations":[],"preferred":false,"id":479194,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Johnson, Patricia","contributorId":16303,"corporation":false,"usgs":true,"family":"Johnson","given":"Patricia","email":"","affiliations":[],"preferred":false,"id":479195,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70038950,"text":"70038950 - 2013 - Using structured decision making to manage disease risk for Montana wildlife","interactions":[],"lastModifiedDate":"2013-06-19T09:39:24","indexId":"70038950","displayToPublicDate":"2013-06-19T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3779,"text":"Wildlife Society Bulletin","onlineIssn":"1938-5463","printIssn":"0091-7648","active":true,"publicationSubtype":{"id":10}},"title":"Using structured decision making to manage disease risk for Montana wildlife","docAbstract":"We used structured decision-making to develop a 2-part framework to assist managers in the proactive management of disease outbreaks in Montana, USA. The first part of the framework is a model to estimate the probability of disease outbreak given field observations available to managers. The second part of the framework is decision analysis that evaluates likely outcomes of management alternatives based on the estimated probability of disease outbreak, and applies managers' values for different objectives to indicate a preferred management strategy. We used pneumonia in bighorn sheep (Ovis canadensis) as a case study for our approach, applying it to 2 populations in Montana that differed in their likelihood of a pneumonia outbreak. The framework provided credible predictions of both probability of disease outbreaks, as well as biological and monetary consequences of management actions. The structured decision-making approach to this problem was valuable for defining the challenges of disease management in a decentralized agency where decisions are generally made at the local level in cooperation with stakeholders. Our approach provides local managers with the ability to tailor management planning for disease outbreaks to local conditions. Further work is needed to refine our disease risk models and decision analysis, including robust prediction of disease outbreaks and improved assessment of management alternatives.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Wildlife Society Bulletin","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Wiley","doi":"10.1002/wsb.237","usgsCitation":"Mitchell, M.S., Gude, J., Anderson, N.J., Ramsey, J.M., Thompson, M.J., Sullivan, M.G., Edwards, V.L., Gower, C.N., Cochrane, J.F., Irwin, E.R., and Walshe, T., 2013, Using structured decision making to manage disease risk for Montana wildlife: Wildlife Society Bulletin, v. 37, no. 1, p. 107-114, https://doi.org/10.1002/wsb.237.","productDescription":"8 p.","startPage":"107","endPage":"114","ipdsId":"IP-032329","costCenters":[{"id":399,"text":"Montana Cooperative Wildlife Research Unit","active":false,"usgs":true}],"links":[{"id":500048,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doaj.org/article/a1996aa486b74d31a9493c9a6b0ef505","text":"External Repository"},{"id":273997,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":273996,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1002/wsb.237"}],"country":"United States","state":"Montana","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -116.05,44.36 ], [ -116.05,49.0 ], [ -104.04,49.0 ], [ -104.04,44.36 ], [ -116.05,44.36 ] ] ] } } ] }","volume":"37","issue":"1","noUsgsAuthors":false,"publicationDate":"2012-12-31","publicationStatus":"PW","scienceBaseUri":"51c2c4d6e4b08857aac42384","contributors":{"authors":[{"text":"Mitchell, Michael S. 0000-0002-0773-6905 mmitchel@usgs.gov","orcid":"https://orcid.org/0000-0002-0773-6905","contributorId":3716,"corporation":false,"usgs":true,"family":"Mitchell","given":"Michael","email":"mmitchel@usgs.gov","middleInitial":"S.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":465285,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Gude, Justin A.","contributorId":95780,"corporation":false,"usgs":true,"family":"Gude","given":"Justin A.","affiliations":[],"preferred":false,"id":465293,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Anderson, Neil J.","contributorId":85870,"corporation":false,"usgs":true,"family":"Anderson","given":"Neil","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":465289,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ramsey, Jennifer M.","contributorId":88254,"corporation":false,"usgs":true,"family":"Ramsey","given":"Jennifer","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":465290,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Thompson, Michael J.","contributorId":30899,"corporation":false,"usgs":false,"family":"Thompson","given":"Michael","email":"","middleInitial":"J.","affiliations":[{"id":6582,"text":"Montana Fish, Wildlife and Parks, Missoula, Montana 59801, USA","active":true,"usgs":false}],"preferred":false,"id":465287,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Sullivan, Mark G.","contributorId":100724,"corporation":false,"usgs":true,"family":"Sullivan","given":"Mark","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":465294,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Edwards, Victoria L.","contributorId":90149,"corporation":false,"usgs":true,"family":"Edwards","given":"Victoria","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":465291,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Gower, Claire N.","contributorId":73487,"corporation":false,"usgs":true,"family":"Gower","given":"Claire","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":465288,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Cochrane, Jean Fitts","contributorId":92416,"corporation":false,"usgs":true,"family":"Cochrane","given":"Jean","email":"","middleInitial":"Fitts","affiliations":[],"preferred":false,"id":465292,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Irwin, Elise R. 0000-0002-6866-4976 eirwin@usgs.gov","orcid":"https://orcid.org/0000-0002-6866-4976","contributorId":2588,"corporation":false,"usgs":true,"family":"Irwin","given":"Elise","email":"eirwin@usgs.gov","middleInitial":"R.","affiliations":[{"id":506,"text":"Office of the AD Ecosystems","active":true,"usgs":true},{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"preferred":true,"id":465284,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Walshe, Terry","contributorId":28151,"corporation":false,"usgs":true,"family":"Walshe","given":"Terry","affiliations":[],"preferred":false,"id":465286,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70046666,"text":"sir20135114 - 2013 - A model for evaluating effects of climate, water availability, and water management on wetland impoundments--a case study on Bowdoin, Long Lake, and Sand Lake National Wildlife Refuges","interactions":[],"lastModifiedDate":"2013-06-19T09:25:29","indexId":"sir20135114","displayToPublicDate":"2013-06-19T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-5114","title":"A model for evaluating effects of climate, water availability, and water management on wetland impoundments--a case study on Bowdoin, Long Lake, and Sand Lake National Wildlife Refuges","docAbstract":"Many wetland impoundments managed by the U.S. Fish and Wildlife Service (USFWS) National Wildlife Refuge System throughout the northern Great Plains rely on rivers as a primary water source. A large number of these impoundments currently are being stressed from changes in water supplies and quality, and these problems are forecast to worsen because of projected changes to climate and land use. For example, many managed wetlands in arid regions have become degraded owing to the long-term accumulation of salts and increased salinity associated with evapotranspiration. A primary goal of the USFWS is to provide aquatic habitats for a diversity of waterbirds; thus, wetland managers would benefit from a tool that facilitates evaluation of wetland habitat quality in response to current and anticipated impacts of altered hydrology and salt balances caused by factors such as climate change, water availability, and management actions.\n\nA spreadsheet model that simulates the overall water and salinity balance (WSB model) of managed wetland impoundments is presented. The WSB model depicts various habitat metrics, such as water depth, salinity, and surface areas (inundated, dry), which can be used to evaluate alternative management actions under various water-availability and climate scenarios. The WSB model uses widely available spreadsheet software, is relatively simple to use, relies on widely available inputs, and is readily adaptable to specific locations. The WSB model was validated using data from three National Wildlife Refuges with direct and indirect connections to water resources associated with rivers, and common data limitations are highlighted. The WSB model also was used to conduct simulations based on hypothetical climate and management scenarios to demonstrate the utility of the model for evaluating alternative management strategies and climate futures. The WSB model worked well across a range of National Wildlife Refuges and could be a valuable tool for USFWS staff when evaluating system state and management alternatives and establishing long-term goals and objectives.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20135114","usgsCitation":"Tangen, B., Gleason, R.A., and Stamm, J., 2013, A model for evaluating effects of climate, water availability, and water management on wetland impoundments--a case study on Bowdoin, Long Lake, and Sand Lake National Wildlife Refuges: U.S. Geological Survey Scientific Investigations Report 2013-5114, vi, 37 p.; WSB Model, https://doi.org/10.3133/sir20135114.","productDescription":"vi, 37 p.; WSB Model","numberOfPages":"48","onlineOnly":"Y","additionalOnlineFiles":"Y","costCenters":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":273995,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir20135114.jpg"},{"id":273994,"type":{"id":7,"text":"Companion Files"},"url":"https://pubs.usgs.gov/sir/2013/5114/WSB%20Model.xlsx"},{"id":273992,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2013/5114/"},{"id":273993,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2013/5114/sir2013-5114.pdf"}],"country":"United States","otherGeospatial":"Bowdoin National Wildlife Refuge;Long Lake National Wildlife Refuge;Sand Lake National Wildlife Refuge","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -107.8,45.6 ], [ -107.8,48.533333 ], [ -98.0,48.533333 ], [ -98.0,45.6 ], [ -107.8,45.6 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c2c4cde4b08857aac42378","contributors":{"authors":[{"text":"Tangen, Brian A.","contributorId":78419,"corporation":false,"usgs":true,"family":"Tangen","given":"Brian A.","affiliations":[],"preferred":false,"id":479957,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Gleason, Robert A. 0000-0001-5308-8657 rgleason@usgs.gov","orcid":"https://orcid.org/0000-0001-5308-8657","contributorId":2402,"corporation":false,"usgs":true,"family":"Gleason","given":"Robert","email":"rgleason@usgs.gov","middleInitial":"A.","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":479955,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stamm, John F. 0000-0002-3404-2933 jstamm@usgs.gov","orcid":"https://orcid.org/0000-0002-3404-2933","contributorId":2859,"corporation":false,"usgs":true,"family":"Stamm","given":"John F.","email":"jstamm@usgs.gov","affiliations":[{"id":562,"text":"South Dakota Water Science Center","active":true,"usgs":true}],"preferred":false,"id":479956,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70045025,"text":"70045025 - 2013 - Development of MODFLOW-USG: an un-structured grid version of MODFLOW","interactions":[],"lastModifiedDate":"2013-06-18T15:58:12","indexId":"70045025","displayToPublicDate":"2013-06-18T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2015,"text":"International Association of Hydrogeologists Newsletter","active":true,"publicationSubtype":{"id":10}},"title":"Development of MODFLOW-USG: an un-structured grid version of MODFLOW","docAbstract":"MODFLOW was revolutionary when it was first unveiled by the USGS in 1988, and since then it has been the most widely used groundwater flow modeling program in the world. MODFLOW’s simulation capabilities have evolved substantially since its initial release and it has been an inspiration for more comprehensive analysis simulators including surface-water/groundwater interaction models (e.g., GSFLOW, SWF, MODHMS, ISGW), flow and transport analysis simulators (e.g., MT3D, MODFLOWSURFACT, MODFLOW-T), and saltwater intrusion models (e.g., SEAWAT).","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"International Association of Hydrogeologists Newsletter","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"International Association of Hydrogeologists","usgsCitation":"Panday, S., 2013, Development of MODFLOW-USG: an un-structured grid version of MODFLOW: International Association of Hydrogeologists Newsletter, v. 42, no. 1, p. 4-5.","productDescription":"2 p.","startPage":"4","endPage":"5","ipdsId":"IP-044827","costCenters":[{"id":494,"text":"Office of Groundwater","active":false,"usgs":true}],"links":[{"id":273968,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":273964,"type":{"id":11,"text":"Document"},"url":"https://www.iah.org/usa/spring2013.pdf"}],"volume":"42","issue":"1","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c17356e4b0dd0e00d92177","contributors":{"authors":[{"text":"Panday, Sorab","contributorId":100513,"corporation":false,"usgs":true,"family":"Panday","given":"Sorab","affiliations":[],"preferred":false,"id":476640,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70046220,"text":"70046220 - 2013 - Kinetics of homogeneous and surface-catalyzed mercury(II) reduction by iron(II)","interactions":[],"lastModifiedDate":"2013-07-15T09:46:19","indexId":"70046220","displayToPublicDate":"2013-06-18T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1565,"text":"Environmental Science & Technology","onlineIssn":"1520-5851","printIssn":"0013-936X","active":true,"publicationSubtype":{"id":10}},"title":"Kinetics of homogeneous and surface-catalyzed mercury(II) reduction by iron(II)","docAbstract":"Production of elemental mercury, Hg(0), via Hg(II) reduction is an important pathway that should be considered when studying Hg fate in environment. We conducted a kinetic study of abiotic homogeneous and surface-catalyzed Hg(0) production by Fe(II) under dark anoxic conditions. Hg(0) production rate, from initial 50 pM Hg(II) concentration, increased with increasing pH (5.5–8.1) and aqueous Fe(II) concentration (0.1–1 mM). The homogeneous rate was best described by the expression, r<sub>hom</sub> = k<sub>hom</sub> [FeOH<sup>+</sup>] [Hg(OH)<sub>2</sub>]; k<sub>hom</sub> = 7.19 × 10<sup>+3</sup> L (mol min)<sup>−1</sup>. Compared to the homogeneous case, goethite (α-FeOOH) and hematite (α-Fe<sub>2</sub>O<sub>3</sub>) increased and γ-alumina (γ-Al<sub>2</sub>O<sub>3</sub>) decreased the Hg(0) production rate. Heterogeneous Hg(0) production rates were well described by a model incorporating equilibrium Fe(II) adsorption, rate-limited Hg(II) reduction by dissolved and adsorbed Fe(II), and rate-limited Hg(II) adsorption. Equilibrium Fe(II) adsorption was described using a surface complexation model calibrated with previously published experimental data. The Hg(0) production rate was well described by the expression r<sub>het</sub> = k<sub>het</sub> [>SOFe<sup>(II)</sup>] [Hg(OH)<sub>2</sub>], where >SOFe<sup>(II)</sup> is the total adsorbed Fe(II) concentration; k<sub>het</sub> values were 5.36 × 10<sup>+3</sup>, 4.69 × 10<sup>+3</sup>, and 1.08 × 10<sup>+2</sup> L (mol min)<sup>−1</sup> for hematite, goethite, and γ-alumina, respectively. Hg(0) production coupled to reduction by Fe(II) may be an important process to consider in ecosystem Hg studies.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Environmental Science and Technology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"ACS Publications","doi":"10.1021/es401459p","usgsCitation":"Amirbahman, A., Kent, D.B., Curtis, G.P., and Marvin-DiPasquale, M.C., 2013, Kinetics of homogeneous and surface-catalyzed mercury(II) reduction by iron(II): Environmental Science & Technology, v. 47, no. 13, p. 7204-7213, https://doi.org/10.1021/es401459p.","productDescription":"10 p.","startPage":"7204","endPage":"7213","ipdsId":"IP-046069","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"links":[{"id":273958,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":273954,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1021/es401459p"}],"volume":"47","issue":"13","noUsgsAuthors":false,"publicationDate":"2013-06-17","publicationStatus":"PW","scienceBaseUri":"51c17359e4b0dd0e00d9218f","contributors":{"authors":[{"text":"Amirbahman, Aria","contributorId":44031,"corporation":false,"usgs":true,"family":"Amirbahman","given":"Aria","email":"","affiliations":[],"preferred":false,"id":479208,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kent, Douglas B. 0000-0003-3758-8322 dbkent@usgs.gov","orcid":"https://orcid.org/0000-0003-3758-8322","contributorId":1871,"corporation":false,"usgs":true,"family":"Kent","given":"Douglas","email":"dbkent@usgs.gov","middleInitial":"B.","affiliations":[{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":479206,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Curtis, Gary P. 0000-0003-3975-8882 gpcurtis@usgs.gov","orcid":"https://orcid.org/0000-0003-3975-8882","contributorId":2346,"corporation":false,"usgs":true,"family":"Curtis","given":"Gary","email":"gpcurtis@usgs.gov","middleInitial":"P.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":479207,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Marvin-DiPasquale, Mark C. 0000-0002-8186-9167 mmarvin@usgs.gov","orcid":"https://orcid.org/0000-0002-8186-9167","contributorId":1485,"corporation":false,"usgs":true,"family":"Marvin-DiPasquale","given":"Mark","email":"mmarvin@usgs.gov","middleInitial":"C.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":479205,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70045031,"text":"70045031 - 2013 - Dynamic deformation of Seguam Island, Alaska, 1992--2008, from multi-interferogram InSAR processing","interactions":[],"lastModifiedDate":"2013-07-01T10:11:32","indexId":"70045031","displayToPublicDate":"2013-06-18T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2499,"text":"Journal of Volcanology and Geothermal Research","active":true,"publicationSubtype":{"id":10}},"title":"Dynamic deformation of Seguam Island, Alaska, 1992--2008, from multi-interferogram InSAR processing","docAbstract":"We generated a time-series of ERS-1/2 and ENVISAT interferometric synthetic aperture radar (InSAR) images to study ground surface deformation at Seguam Island from 1992 to 2008. We used the small baseline subset (SBAS) technique to reduce artifacts associated with baseline uncertainties and atmospheric delay anomalies, and processed images from two adjacent tracks to validate our results. Seguam Island comprises the remnants of two late Quaternary calderas, one in the western caldera of the island and one in the eastern part of the island. The western caldera subsided at a constant rate of ~ 1.6 cm/yr throughout the study period, while the eastern caldera experienced alternating periods of subsidence and uplift: ~ 5 cm/year uplift during January 1993–October 1993 (stage 1), ~ 1.6 cm/year subsidence during October 1993–November 1998 (stage 2), ~ 2.0 cm/year uplift during November 1998–September 2000 (stage 3), ~ 1.4 cm/year subsidence during September 2000–November 2005 (stage 4), and ~ 0.8 cm/year uplift during November 2005– July 2007 (stage 5). Source modeling indicates a deflationary source less than 2 km below sea level (BSL) beneath the western caldera and two sources beneath the eastern caldera: an inflationary source 2.5–6.0 km BSL and a deflationary source less than 2 km BSL. We suggest that uplift of the eastern caldera is driven by episodic intrusions of basaltic magma into a poroelastic reservoir 2.5–6.0 km BSL beneath the caldera. Cooling and degassing of the reservoir between intrusions results in steady subsidence of the overlying surface. Although we found no evidence of magma intrusion beneath the western caldera during the study period, it is the site (Pyre Peak) of all historical eruptions on the island and therefore cooling and degassing of intrusions presumably contributes to subsidence there as well. Another likely subsidence mechanism in the western caldera is thermoelastic contraction of lava flows emplaced near Pyre Peak during several historical eruptions, most recently in 1977 and 1992–93.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Journal of Volcanology and Geothermal Research","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","doi":"10.1016/j.jvolgeores.2013.05.009","usgsCitation":"Lee, C., Lu, Z., Won, J., Jung, H., and Dzurisin, D., 2013, Dynamic deformation of Seguam Island, Alaska, 1992--2008, from multi-interferogram InSAR processing: Journal of Volcanology and Geothermal Research, v. 260, p. 43-51, https://doi.org/10.1016/j.jvolgeores.2013.05.009.","productDescription":"9 p.","startPage":"43","endPage":"51","ipdsId":"IP-026604","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":273991,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":273989,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.jvolgeores.2013.05.009"}],"country":"United States","state":"Alaska","otherGeospatial":"Seguam Island","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ 172.5,51.2 ], [ 172.5,71.4 ], [ -130.0,71.4 ], [ -130.0,51.2 ], [ 172.5,51.2 ] ] ] } } ] }","volume":"260","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c17357e4b0dd0e00d92183","contributors":{"authors":[{"text":"Lee, Chang-Wook","contributorId":15748,"corporation":false,"usgs":true,"family":"Lee","given":"Chang-Wook","email":"","affiliations":[],"preferred":false,"id":476652,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Lu, Zhong 0000-0001-9181-1818 lu@usgs.gov","orcid":"https://orcid.org/0000-0001-9181-1818","contributorId":901,"corporation":false,"usgs":true,"family":"Lu","given":"Zhong","email":"lu@usgs.gov","affiliations":[],"preferred":true,"id":476651,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Won, Joong-Sun","contributorId":16966,"corporation":false,"usgs":true,"family":"Won","given":"Joong-Sun","email":"","affiliations":[],"preferred":false,"id":476653,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Jung, Hyung-Sup","contributorId":58382,"corporation":false,"usgs":true,"family":"Jung","given":"Hyung-Sup","email":"","affiliations":[],"preferred":false,"id":476654,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dzurisin, Daniel 0000-0002-0138-5067 dzurisin@usgs.gov","orcid":"https://orcid.org/0000-0002-0138-5067","contributorId":538,"corporation":false,"usgs":true,"family":"Dzurisin","given":"Daniel","email":"dzurisin@usgs.gov","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":476650,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70046641,"text":"sir20135106 - 2013 - Hydraulic and water-quality data collection for the investigation of Great Lakes tributaries for Asian carp spawning and egg-transport suitability","interactions":[],"lastModifiedDate":"2016-07-20T12:37:04","indexId":"sir20135106","displayToPublicDate":"2013-06-18T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-5106","title":"Hydraulic and water-quality data collection for the investigation of Great Lakes tributaries for Asian carp spawning and egg-transport suitability","docAbstract":"<p>If the invasive Asian carps (bighead carp&nbsp;<i>Hypophthalmichthys nobilis</i>&nbsp;and silver carp&nbsp;<i>Hypophthalmichthys molitrix</i>) migrate to the Great Lakes, in spite of the efforts to stop their advancement, these species will require the fast-flowing water of the Great Lakes tributaries for spawning and recruitment in order to establish a growing population. Two Lake Michigan tributaries (the Milwaukee and St. Joseph Rivers) and two Lake Erie tributaries (the Maumee and Sandusky Rivers) were investigated to determine if these tributaries possess the hydraulic and water-quality characteristics to allow successful spawning of Asian carps. To examine this issue, standard U.S.&nbsp;Geological Survey sampling protocols and instrumentation for discharge and water-quality measurements were used, together with differential global positioning system data for georeferencing. Non-standard data-processing techniques, combined with detailed laboratory analysis of Asian carp egg characteristics, allowed an assessment of the transport capabilities of each of these four tributaries. This assessment is based solely on analysis of observed data and did not utilize the collected data for detailed transport modeling.</p>\n<p>All four tributaries exhibited potential settling zones for Asian carp eggs both within the estuaries and river mouths and within the lower 100 kilometers (km) of the river. Dams played a leading role in defining these settling zones, with the exception of dams on the Sandusky River. The impoundments created by many of the larger dams on these rivers acted to sufficiently decelerate the flows and allowed the shear velocity to drop below the settling velocity for Asian carp eggs, which would allow the eggs to fall out of suspension and settle on the bottom where it is thought the eggs would perish. While three rivers exhibited these settling zones upstream of the larger dams, not all settling zones are likely to have such effects on egg transport. The Milwaukee River exhibited only a short settling zone upstream of the Grafton Dam, whereas the St. Joseph and Maumee Rivers both had extensive settling zones (&gt;5 km) behind major dams. These longer settling zones are likely to capture more eggs than shorter settling reaches. All four rivers exhibited settling zones at their river mouths, with the Lake Erie tributaries having much larger settling zones extending more than 10 km up the tributaries.</p>\n<p>While hydraulic data from all four rivers indicated settling of eggs is possible in some locations, all four rivers also exhibited sufficient temperatures, water-quality characteristics, turbulence, and transport times outside of settling zones for successful suspension and development of Asian carp eggs to the hatching stage before the threat of settlement. These observed data indicate that these four Great Lakes tributaries have sufficient hydraulic and water-quality characteristics to support successful spawning and recruitment of Asian carps. The data indicate that with the right temperature and flow conditions, river reaches as short as 25 km may allow Asian carp eggs sufficient time to develop to hatching. Additionally, examining the relation between critical shear velocity and mean velocity, egg settling appears to take place at mean velocities in the range of 15&ndash;25&nbsp;centimeters per second, a much lower value than is generally cited in the literature. A first-order estimate of the minimum transport velocity for Asian carp eggs in a river can be obtained by using mean flow depth and river substrate data, and curves were constructed to show this relation. These findings would expand the number of possible tributaries suitable for Asian carp spawning and contribute to the understanding of how hydraulic and water-quality information can be used to screen additional rivers in the future.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20135106","collaboration":"Prepared in cooperation with the Great Lakes Restoration Initiative","usgsCitation":"Murphy, E., and Jackson, P., 2013, Hydraulic and water-quality data collection for the investigation of Great Lakes tributaries for Asian carp spawning and egg-transport suitability: U.S. Geological Survey Scientific Investigations Report 2013-5106, vi, 30 p., https://doi.org/10.3133/sir20135106.","productDescription":"vi, 30 p.","numberOfPages":"40","onlineOnly":"Y","additionalOnlineFiles":"N","costCenters":[{"id":344,"text":"Illinois Water Science Center","active":true,"usgs":true}],"links":[{"id":273892,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2013/5106/pdf/sir2013-5106_web.pdf","text":"Report","size":"5.98 MB","linkFileType":{"id":1,"text":"pdf"},"description":"Report"},{"id":273888,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2013/5106/"},{"id":273900,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir20135106.jpg"}],"country":"United States","otherGeospatial":"Great Lakes","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -90.0,40.0 ], [ -90.0,43.0 ], [ -82.0,43.0 ], [ -82.0,40.0 ], [ -90.0,40.0 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c17359e4b0dd0e00d9218b","contributors":{"authors":[{"text":"Murphy, Elizabeth A.","contributorId":69660,"corporation":false,"usgs":true,"family":"Murphy","given":"Elizabeth A.","affiliations":[],"preferred":false,"id":479920,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Jackson, P. Ryan","contributorId":68571,"corporation":false,"usgs":true,"family":"Jackson","given":"P. Ryan","affiliations":[],"preferred":false,"id":479919,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70046623,"text":"sir20135111 - 2013 - Comparison between two statistically based methods, and two physically based models developed to compute daily mean streamflow at ungaged locations in the Cedar River Basin, Iowa","interactions":[],"lastModifiedDate":"2013-06-17T11:56:50","indexId":"sir20135111","displayToPublicDate":"2013-06-17T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-5111","title":"Comparison between two statistically based methods, and two physically based models developed to compute daily mean streamflow at ungaged locations in the Cedar River Basin, Iowa","docAbstract":"A variety of individuals from water resource managers to recreational users need streamflow information for planning and decisionmaking at locations where there are no streamgages. To address this problem, two statistically based methods, the Flow Duration Curve Transfer method and the Flow Anywhere method, were developed for statewide application and the two physically based models, the Precipitation Runoff Modeling-System and the Soil and Water Assessment Tool, were only developed for application for the Cedar River Basin. Observed and estimated streamflows for the two methods and models were compared for goodness of fit at 13 streamgages modeled in the Cedar River Basin by using the Nash-Sutcliffe and the percent-bias efficiency values.\n\nBased on median and mean Nash-Sutcliffe values for the 13 streamgages the Precipitation Runoff Modeling-System and Soil and Water Assessment Tool models appear to have performed similarly and better than Flow Duration Curve Transfer and Flow Anywhere methods. Based on median and mean percent bias values, the Soil and Water Assessment Tool model appears to have generally overestimated daily mean streamflows, whereas the Precipitation Runoff Modeling-System model and statistical methods appear to have underestimated daily mean streamflows. The Flow Duration Curve Transfer method produced the lowest median and mean percent bias values and appears to perform better than the other models.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20135111","collaboration":"Prepared in cooperation with the Iowa Department of Natural Resources","usgsCitation":"Linhart, S., Nania, J.F., Christiansen, D.E., Hutchinson, K.J., Sanders, C.L., and Archfield, S.A., 2013, Comparison between two statistically based methods, and two physically based models developed to compute daily mean streamflow at ungaged locations in the Cedar River Basin, Iowa: U.S. Geological Survey Scientific Investigations Report 2013-5111, iv, 7 p., https://doi.org/10.3133/sir20135111.","productDescription":"iv, 7 p.","numberOfPages":"15","onlineOnly":"Y","additionalOnlineFiles":"N","costCenters":[{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true}],"links":[{"id":273813,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2013/5111/sir13_5111_web.pdf"},{"id":273815,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir20135111.gif"},{"id":273812,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2013/5111/"}],"country":"United States","state":"Iowa","otherGeospatial":"Cedar River Basin","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -96.64,40.38 ], [ -96.64,43.5 ], [ -90.14,43.5 ], [ -90.14,40.38 ], [ -96.64,40.38 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c021d4e4b0ee1529ecdebe","contributors":{"authors":[{"text":"Linhart, S. Mike","contributorId":61073,"corporation":false,"usgs":true,"family":"Linhart","given":"S. Mike","affiliations":[],"preferred":false,"id":479883,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Nania, Jon F. jfnania@usgs.gov","contributorId":4767,"corporation":false,"usgs":true,"family":"Nania","given":"Jon","email":"jfnania@usgs.gov","middleInitial":"F.","affiliations":[{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479882,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Christiansen, Daniel E. 0000-0001-6108-2247 dechrist@usgs.gov","orcid":"https://orcid.org/0000-0001-6108-2247","contributorId":366,"corporation":false,"usgs":true,"family":"Christiansen","given":"Daniel","email":"dechrist@usgs.gov","middleInitial":"E.","affiliations":[{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479879,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hutchinson, Kasey J. khutchin@usgs.gov","contributorId":4223,"corporation":false,"usgs":true,"family":"Hutchinson","given":"Kasey","email":"khutchin@usgs.gov","middleInitial":"J.","affiliations":[{"id":351,"text":"Iowa Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479881,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Sanders, Curtis L. Jr.","contributorId":76391,"corporation":false,"usgs":true,"family":"Sanders","given":"Curtis","suffix":"Jr.","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":479884,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Archfield, Stacey A. 0000-0002-9011-3871 sarch@usgs.gov","orcid":"https://orcid.org/0000-0002-9011-3871","contributorId":1874,"corporation":false,"usgs":true,"family":"Archfield","given":"Stacey","email":"sarch@usgs.gov","middleInitial":"A.","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":502,"text":"Office of Surface Water","active":true,"usgs":true}],"preferred":true,"id":479880,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70046524,"text":"70046524 - 2013 - Development of a Fluvial Egg Drift Simulator to evaluate the transport and dispersion of Asian carp eggs in rivers","interactions":[],"lastModifiedDate":"2013-06-17T12:08:31","indexId":"70046524","displayToPublicDate":"2013-06-17T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1458,"text":"Ecological Modelling","active":true,"publicationSubtype":{"id":10}},"title":"Development of a Fluvial Egg Drift Simulator to evaluate the transport and dispersion of Asian carp eggs in rivers","docAbstract":"Asian carp are migrating towards the Great Lakes and are threatening to invade this ecosystem, hence there is an immediate need to control their population. The transport of Asian carp eggs in potential spawning rivers is an important factor in its life history and recruitment success. An understanding of the transport, development, and fate of Asian carp eggs has the potential to create prevention, management, and control strategies before the eggs hatch and develop the ability to swim. However, there is not a clear understanding of the hydrodynamic conditions at which the eggs are transported and kept in suspension. This knowledge is imperative because of the current assumption that suspension is required for the eggs to survive. Herein, FluEgg (Fluvial Egg Drift Simulator), a three-dimensional Lagrangian model capable of evaluating the influence of flow velocity, shear dispersion and turbulent diffusion on the transport and dispersal patterns of Asian carp eggs is presented. The model's variables include not only biological behavior (growth rate, density changes) but also the physical characteristics of the flow field, such as mean velocities and eddy diffusivities. The performance of the FluEgg model was evaluated using observed data from published flume experiments conducted in China with water-hardened Asian carp eggs as subjects. FluEgg simulations show a good agreement with the experimental data. The model was also run with observed data from the Sandusky River in Ohio to provide a real-world demonstration case. This research will support the identification of critical hydrodynamic conditions (e.g., flow velocity, depth, and shear velocity) to maintain eggs in suspension, assist in the evaluation of suitable spawning rivers for Asian carp populations and facilitate the development of prevention, control and management strategies for Asian carp species in rivers and water bodies.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Ecological Modelling","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","doi":"10.1016/j.ecolmodel.2013.05.005","usgsCitation":"Garcia, T., Jackson, P., Murphy, E., Valocchi, A.J., and Garcia, M., 2013, Development of a Fluvial Egg Drift Simulator to evaluate the transport and dispersion of Asian carp eggs in rivers: Ecological Modelling, v. 263, p. 211-222, https://doi.org/10.1016/j.ecolmodel.2013.05.005.","productDescription":"12 p.","startPage":"211","endPage":"222","ipdsId":"IP-042130","costCenters":[{"id":344,"text":"Illinois Water Science Center","active":true,"usgs":true}],"links":[{"id":438787,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P93UCQR2","text":"USGS data release","linkHelpText":"FluEgg"},{"id":273818,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":273688,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.ecolmodel.2013.05.005"}],"volume":"263","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51c021d5e4b0ee1529ecdec6","chorus":{"doi":"10.1016/j.ecolmodel.2013.05.005","url":"http://dx.doi.org/10.1016/j.ecolmodel.2013.05.005","publisher":"Elsevier BV","authors":"Garcia Tatiana, Jackson P. Ryan, Murphy Elizabeth A., Valocchi Albert J., Garcia Marcelo H.","journalName":"Ecological Modelling","publicationDate":"8/2013"},"contributors":{"authors":[{"text":"Garcia, Tatiana","contributorId":54870,"corporation":false,"usgs":true,"family":"Garcia","given":"Tatiana","affiliations":[],"preferred":false,"id":479759,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Jackson, P. Ryan","contributorId":68571,"corporation":false,"usgs":true,"family":"Jackson","given":"P. Ryan","affiliations":[],"preferred":false,"id":479760,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Murphy, Elizabeth A.","contributorId":69660,"corporation":false,"usgs":true,"family":"Murphy","given":"Elizabeth A.","affiliations":[],"preferred":false,"id":479761,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Valocchi, Albert J.","contributorId":25062,"corporation":false,"usgs":true,"family":"Valocchi","given":"Albert","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":479758,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Garcia, Marcelo H.","contributorId":74236,"corporation":false,"usgs":false,"family":"Garcia","given":"Marcelo H.","affiliations":[{"id":33106,"text":"University of Illinois at Urbana Champaign","active":true,"usgs":false}],"preferred":false,"id":479762,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70160592,"text":"70160592 - 2013 - Interactions between invasive round gobies (<i>Neogobius melanostomous</i>) and fantail darters (<i>Etheostoma flabellare</i>) in a tributary of the St. Lawrence River, New York, USA","interactions":[],"lastModifiedDate":"2015-12-23T15:07:09","indexId":"70160592","displayToPublicDate":"2013-06-14T16:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2299,"text":"Journal of Freshwater Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Interactions between invasive round gobies (<i>Neogobius melanostomous</i>) and fantail darters (<i>Etheostoma flabellare</i>) in a tributary of the St. Lawrence River, New York, USA","docAbstract":"<p>The initial, rapid expansion of the invasive round goby (<i>Neogobius melanostomus</i>) throughout the Great Lakes drainage was largely confined to lentic systems. We recently observed round gobies ascending two tributaries of the St. Lawrence River. The expansion of gobies into small lotic environments may place ecologically similar species at risk. Fantail darter (<i>Etheostoma flabellare</i>) is one of the several benthic species of the New York Great Lakes drainages that are threatened by round goby invasion. We examined the habitat use and diet composition of fantail darters and round gobies in Mullet Creek, a third-order tributary of the St. Lawrence River, NY, USA. The objectives of this study were to determine the degree of habitat and diet overlap between fantail darters and round gobies in a tributary of the St. Lawrence River. Gobies and darters co-occurred at 22% of capture sites. Of the four habitat variables examined (cover, depth, substrate and velocity), only depth use was significantly different with gobies using deeper habitats than darters. Among the two species and size classes sampled (large vs. small), large darters had the most restricted habitat use requirements. There was variation in round goby and darter diet composition, but only moderate diet overlap occurred between fantail darters and round gobies (C&lambda; = 0.43). Conditions in Mullet Creek were appropriate for the evaluation of possible spatial and dietary competition between round goby and native darters. Early detection and management of round goby invasions is critical to maintaining ecological integrity of lotic ecosystems in the St. Lawrence Valley.</p>","language":"English","publisher":"Oikos","publisherLocation":"La Crosse, WI","doi":"10.1080/02705060.2013.794165","usgsCitation":"Abbett, R., Waldt, E.M., Johnson, J.H., McKenna, J., and Dittman, D.E., 2013, Interactions between invasive round gobies (<i>Neogobius melanostomous</i>) and fantail darters (<i>Etheostoma flabellare</i>) in a tributary of the St. Lawrence River, New York, USA: Journal of Freshwater Ecology, v. 28, no. 4, p. 529-537, https://doi.org/10.1080/02705060.2013.794165.","productDescription":"9 p.","startPage":"529","endPage":"537","numberOfPages":"9","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-045537","costCenters":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"links":[{"id":473743,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1080/02705060.2013.794165","text":"Publisher Index Page"},{"id":312842,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"New York","otherGeospatial":"Mullet Creek","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -75.92668533325195,\n              44.26278129912987\n            ],\n            [\n              -75.92702865600586,\n              44.26062990332075\n            ],\n            [\n              -75.94608306884766,\n              44.25509738116734\n            ],\n            [\n              -75.9528636932373,\n              44.25306865928177\n            ],\n            [\n              -75.95612525939941,\n              44.25485147921172\n     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]\n}","volume":"28","issue":"4","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"567bd3bde4b0a04ef491a203","contributors":{"authors":[{"text":"Abbett, Ross 0000-0001-6276-5541 rabbett@usgs.gov","orcid":"https://orcid.org/0000-0001-6276-5541","contributorId":4359,"corporation":false,"usgs":true,"family":"Abbett","given":"Ross","email":"rabbett@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":583229,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Waldt, Emily M. ewaldt@usgs.gov","contributorId":4358,"corporation":false,"usgs":true,"family":"Waldt","given":"Emily","email":"ewaldt@usgs.gov","middleInitial":"M.","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":583226,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Johnson, James H. 0000-0002-5619-3871 jhjohnson@usgs.gov","orcid":"https://orcid.org/0000-0002-5619-3871","contributorId":389,"corporation":false,"usgs":true,"family":"Johnson","given":"James","email":"jhjohnson@usgs.gov","middleInitial":"H.","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":583228,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McKenna, James E. Jr. 0000-0002-1428-7597 jemckenna@usgs.gov","orcid":"https://orcid.org/0000-0002-1428-7597","contributorId":627,"corporation":false,"usgs":true,"family":"McKenna","given":"James E.","suffix":"Jr.","email":"jemckenna@usgs.gov","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":false,"id":583227,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dittman, Dawn E. 0000-0002-0711-3732 ddittman@usgs.gov","orcid":"https://orcid.org/0000-0002-0711-3732","contributorId":2762,"corporation":false,"usgs":true,"family":"Dittman","given":"Dawn","email":"ddittman@usgs.gov","middleInitial":"E.","affiliations":[{"id":324,"text":"Great Lakes Science Center","active":true,"usgs":true}],"preferred":true,"id":583225,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70046577,"text":"sir20135080 - 2013 - Modeled future peak streamflows in four coastal Maine rivers","interactions":[],"lastModifiedDate":"2022-11-21T20:37:41.262194","indexId":"sir20135080","displayToPublicDate":"2013-06-14T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-5080","title":"Modeled future peak streamflows in four coastal Maine rivers","docAbstract":"To safely and economically design bridges and culverts, it is necessary to compute the magnitude of peak streamflows that have specified annual exceedance probabilities (AEPs). Annual precipitation and air temperature in the northeastern United States are, in general, projected to increase during the 21st century. It is therefore important for engineers and resource managers to understand how peak flows may change in the future. This report, prepared in cooperation with the Maine Department of Transportation (MaineDOT), presents modeled changes in peak flows at four basins in coastal Maine on the basis of projected changes in air temperature and precipitation. To estimate future peak streamflows at the four basins in this study, historical values for climate (temperature and precipitation) in the basins were adjusted by different amounts and input to a hydrologic model of each study basin. To encompass the projected changes in climate in coastal Maine by the end of the 21st century, air temperatures were adjusted by four different amounts, from -3.6 degrees Fahrenheit (ºF) (-2 degrees Celsius (ºC)) to +10.8 ºF (+6 ºC) of observed temperatures. Precipitation was adjusted by three different percentage values from -15 percent to +30 percent of observed precipitation. The resulting 20 combinations of temperature and precipitation changes (includes the no-change scenarios) were input to Precipitation-Runoff Modeling System (PRMS) watershed models, and annual daily maximum peak flows were calculated for each combination. Modeled peak flows from the adjusted changes in temperature and precipitation were compared to unadjusted (historical) modeled peak flows. Annual daily maximum peak flows increase or decrease, depending on whether temperature or precipitation is adjusted; increases in air temperature (with no change in precipitation) lead to decreases in peak flows, whereas increases in precipitation (with no change in temperature) lead to increases in peak flows. As the magnitude of air temperatures increase in the four basins, peak flows decrease by larger amounts. If precipitation is held constant (no change from historical values), 17 to 26 percent decreases in peak flow occur at the four basins when temperature is increased by 7.2°F. If temperature is held constant, 26 to 38 percent increases in peak flow result from a 15-percent increase in precipitation. The largest decreases in peak flows at the four basins result from 15-percent decreases in precipitation combined with temperature increases of 10.8°F. The largest increases in peak flows generally result from 30-percent increases in precipitation combined with 3.6 °F decreases in temperatures. In many cases when temperature and precipitation both increase, small increases or decreases in annual daily maximum peak flows result. For likely changes projected for the northeastern United States for the middle of the 21st century (temperature increase of 3.6 °F and precipitation increases of 0 to 15 percent), peak-flow changes at the four coastal Maine basins in this study are modeled to be evenly distributed between increases and decreases of less than 25 percent. Peak flows with 50-percent and 1-percent AEPs (equivalent to 2-year and 100-year recurrence interval peak flows, respectively) were calculated for the four basins in the study using the PRMS-modeled annual daily maximum peak flows. Modeled peak flows with 50-percent and 1-percent AEPs with adjusted temperatures and precipitation were compared to unadjusted (historical) modeled values. Changes in peak flows with 50-percent AEPs are similar to changes in annual daily maximum peak flow; changes in peak flows with 1-percent AEPs are similar in pattern to changes in annual daily maximum peak flow, but some of the changes associated with increasing precipitation are much larger than changes in annual daily maximum peak flow. Substantial decreases in maximum annual winter snowpack water equivalent are modeled to occur with increasing air temperatures at the four basins in the study. (Snowpack is the snow on the ground that accumulates during a winter, and water equivalent is the amount of water in a snowpack if it were melted.) The decrease in modeled peak flows with increasing air temperature, given no change in precipitation amount, is likely caused by these decreases in winter snowpack and resulting decreases in snowmelt runoff. This Scientific Investigations Report, prepared in cooperation with the Maine Department of Transportation, presents a summary of modeled changes in peak flows at four basins in coastal Maine on the basis of projected changes in air temperature and precipitation. The full Fact Sheet (Hodgkins and Dudley, 2013) is available at http://pubs.usgs.gov/fs/2013/3021/.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20135080","collaboration":"Prepared in cooperation with the Maine Department of Transportation","usgsCitation":"Hodgkins, G.A., and Dudley, R.W., 2013, Modeled future peak streamflows in four coastal Maine rivers: U.S. Geological Survey Scientific Investigations Report 2013-5080, iv, 20 p., https://doi.org/10.3133/sir20135080.","productDescription":"iv, 20 p.","numberOfPages":"26","onlineOnly":"Y","additionalOnlineFiles":"N","costCenters":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"links":[{"id":273734,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir20135080.gif"},{"id":273733,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2013/5080/pdf/sir2013-5080.pdf"},{"id":273732,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2013/5080/"}],"country":"United States","state":"Maine","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -70.86751133164161,\n              45.74318793464616\n            ],\n            [\n              -70.86751133164161,\n              43.54298812316884\n            ],\n            [\n              -66.87275234927932,\n              43.54298812316884\n            ],\n            [\n              -66.87275234927932,\n              45.74318793464616\n            ],\n            [\n              -70.86751133164161,\n              45.74318793464616\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51bc2d5ce4b0c04034a01c80","contributors":{"authors":[{"text":"Hodgkins, Glenn A. 0000-0002-4916-5565 gahodgki@usgs.gov","orcid":"https://orcid.org/0000-0002-4916-5565","contributorId":2020,"corporation":false,"usgs":true,"family":"Hodgkins","given":"Glenn","email":"gahodgki@usgs.gov","middleInitial":"A.","affiliations":[{"id":371,"text":"Maine Water Science Center","active":true,"usgs":true},{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479822,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Dudley, Robert W. 0000-0002-0934-0568 rwdudley@usgs.gov","orcid":"https://orcid.org/0000-0002-0934-0568","contributorId":2223,"corporation":false,"usgs":true,"family":"Dudley","given":"Robert","email":"rwdudley@usgs.gov","middleInitial":"W.","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true},{"id":371,"text":"Maine Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479823,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70046587,"text":"70046587 - 2013 - Anatomy of La Jolla submarine canyon system; offshore southern California","interactions":[],"lastModifiedDate":"2022-02-01T21:29:03.612219","indexId":"70046587","displayToPublicDate":"2013-06-14T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2667,"text":"Marine Geology","active":true,"publicationSubtype":{"id":10}},"title":"Anatomy of La Jolla submarine canyon system; offshore southern California","docAbstract":"An autonomous underwater vehicle (AUV) carrying a multibeam sonar and a chirp profiler was used to map sections of the seafloor within the La Jolla Canyon, offshore southern California, at sub-meter scales. Close-up observations and sampling were conducted during remotely operated vehicle (ROV) dives. Minisparker seismic-reflection profiles from a surface ship help to define the overall geometry of the La Jolla Canyon especially with respect to the pre-canyon host sediments.\n\nThe floor of the axial channel is covered with unconsolidated sand similar to the sand on the shelf near the canyon head, lacks outcrops of the pre-canyon host strata, has an almost constant slope of 1.0° and is covered with trains of crescent shaped bedforms. The presence of modern plant material entombed within these sands confirms that the axial channel is presently active. The sand on the canyon floor liquefied during vibracore collection and flowed downslope, illustrating that the sediment filling the channel can easily fail even on this gentle slope.\n\nData from the canyon walls help constrain the age of the canyon and extent of incision. Horizontal beds of moderately cohesive fine-grained sediments exposed on the steep canyon walls are consistently less than 1.232 million years old. The lateral continuity of seismic reflectors in minisparker profiles indicate that pre-canyon host strata extend uninterrupted from outside the canyon underneath some terraces within the canyon. Evidence of abandoned channels and point bar-like deposits are noticeably absent on the inside bend of channel meanders and in the subsurface of the terraces. While vibracores from the surface of terraces contain thin (< 10 cm) turbidites, they are inferred to be part of a veneer of recent sediment covering pre-canyon host sediments that underpin the terraces. The combined use of state of the art seafloor mapping and exploration tools provides a uniquely detailed view of the morphology within an active submarine canyon.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Marine Geology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","doi":"10.1016/j.margeo.2012.10.003","usgsCitation":"Paull, C.K., Caress, D., Lundsten, E., Gwiazda, R., Anderson, K., McGann, M., Conrad, J., Edwards, B., and Sumner, E., 2013, Anatomy of La Jolla submarine canyon system; offshore southern California: Marine Geology, v. 335, p. 16-34, https://doi.org/10.1016/j.margeo.2012.10.003.","productDescription":"19 p.","startPage":"16","endPage":"34","ipdsId":"IP-036805","costCenters":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":273744,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":273743,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.margeo.2012.10.003"}],"country":"United States","state":"California","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -124.41,32.53 ], [ -124.41,42.01 ], [ -114.13,42.01 ], [ -114.13,32.53 ], [ -124.41,32.53 ] ] ] } } ] }","volume":"335","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51bc2d53e4b0c04034a01c68","contributors":{"authors":[{"text":"Paull, C. 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,{"id":70046576,"text":"fs20133021 - 2013 - Modeled future peak streamflows in four coastal Maine rivers","interactions":[],"lastModifiedDate":"2022-11-21T20:04:49.494775","indexId":"fs20133021","displayToPublicDate":"2013-06-14T00:00:00","publicationYear":"2013","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2013-3021","title":"Modeled future peak streamflows in four coastal Maine rivers","docAbstract":"To safely and economically design bridges and culverts, it is necessary to compute the magnitude of peak streamflows that have specified annual exceedance probabilities (AEPs). These peak flows are also needed for effective floodplain management. Annual precipitation and air temperature in the northeastern United States are in general projected to increase during the 21st century (Hayhoe and other, 2007). It is therefore important for engineers and resource managers to understand how peak flows may change in the future. This Fact Sheet, prepared in cooperation with the Maine Department of Transportation, presents a summary of modeled changes in peak flows at four basins in coastal Maine on the basis of projected changes in air temperature and precipitation. The full Scientific Investigations Report (Hodgkins and Dudley, 2013) is available at http://pubs.usgs.gov/sir/2013/5080/.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20133021","collaboration":"Prepared in cooperation with the Maine Department of Transportation","usgsCitation":"Hodgkins, G.A., and Dudley, R.W., 2013, Modeled future peak streamflows in four coastal Maine rivers: U.S. Geological Survey Fact Sheet 2013-3021, 4 p., https://doi.org/10.3133/fs20133021.","productDescription":"4 p.","onlineOnly":"Y","costCenters":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"links":[{"id":273731,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/fs20133021.gif"},{"id":273730,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/fs/2013/3021/pdf/fs2013-3021.pdf"},{"id":273729,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/fs/2013/3021/"}],"country":"United States","state":"Maine","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"coordinates\": [\n          [\n            [\n              -70.86751133164161,\n              45.74318793464616\n            ],\n            [\n              -70.86751133164161,\n              43.54298812316884\n            ],\n            [\n              -66.87275234927932,\n              43.54298812316884\n            ],\n            [\n              -66.87275234927932,\n              45.74318793464616\n            ],\n            [\n              -70.86751133164161,\n              45.74318793464616\n            ]\n          ]\n        ],\n        \"type\": \"Polygon\"\n      }\n    }\n  ]\n}","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"51bc2d5ce4b0c04034a01c7c","contributors":{"authors":[{"text":"Hodgkins, Glenn A. 0000-0002-4916-5565 gahodgki@usgs.gov","orcid":"https://orcid.org/0000-0002-4916-5565","contributorId":2020,"corporation":false,"usgs":true,"family":"Hodgkins","given":"Glenn","email":"gahodgki@usgs.gov","middleInitial":"A.","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true},{"id":371,"text":"Maine Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479820,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Dudley, Robert W. 0000-0002-0934-0568 rwdudley@usgs.gov","orcid":"https://orcid.org/0000-0002-0934-0568","contributorId":2223,"corporation":false,"usgs":true,"family":"Dudley","given":"Robert","email":"rwdudley@usgs.gov","middleInitial":"W.","affiliations":[{"id":371,"text":"Maine Water Science Center","active":true,"usgs":true},{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"preferred":true,"id":479821,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
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