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First, we built a data-base of metadata for 965 individual stations from 96 unique geographical locations that included the location, geomorphic setting, and wetland type for each SET-MH station. The dominant estuarine settings included in the analyses were back-barrier lagoonal marshes and emergent marshes along embayments and tidal tributaries. We then calculated prestorm elevation trends to compare to poststorm elevation measurements to determine the storm impact on each station trend. We hypothesized that the effect of Hurricane Sandy on marsh elevation trends would differ by position relative to landfall (right or left) and distance from landfall in southern New Jersey, as both of these variables influence the presence or absence of storm surge as a result of the physical characteristics of tropical cyclones (in other words, strongest winds typically occur to the right of landfall). Storm surge was spatially less extensive and less deep (~1 meter [m]) in marshes located to the left (in other words, south) of landfall compared to marshes located to the right (in other words, north) of landfall where storm surge covered a larger area and was deeper (3–4 m). About 63 percent of 223 eligible stations had a poststorm trend that was similar to the prestorm trend (in other words, less than ±5 millimeters [mm]), indicating little storm impact on elevation trends at those sites. The remaining 37 percent of stations exhibited significant poststorm deviations from the prestorm trend (in other words, greater than ±5 mm). Of these, stations located to the left of landfall had a significant and greater deviation in their elevation trend, and the deviation was more likely to be positive (elevation gain) compared to marshes located to the right of landfall, which had a significant deviation in their elevation trend that was more likely to be negative (elevation loss). This finding is directly related to storm surge impacts on marsh sediment deposition, where deep storm surge (3–4 m) results in sediment deposition in habitats inland of coastal marshes but less so in the marshes themselves. Substrate compaction by the storm surge over-burden may have contributed to elevation loss, but this was not measured because sufficient marker horizon data were not available for analysis. In contrast, to the left of landfall the wind-driven flooding of sediment laden water pushed into the headwaters of rivers and small bays with an ~1 m surge, and resulted in more prevalent sediment deposition on the marsh surfaces and elevation gain. In general, the findings support previous research showing that the physical characteristics of the storm (for example, wind speed, storm surge height, impact angle of landfall) combined with the local wetland conditions (for example, marsh productivity, groundwater level, tide height) are important factors determining a storm’s impact on soil elevation, and that the soil elevation response can vary widely among multiple wetland sites impacted by the same storm and among different storms for the same wetland site.</p><p>The final objective of this project was to create a framework using metadata from the opportunistic network of SET-MH stations that could be used to develop a strategic monitoring network designed to address specific climate change impacts and related phenomena identified by land managers and stakeholders. We evaluated the spatial distribution and density of SET-MH stations in relation to geographic coverage, marsh setting, availability of public land, and historical storm surge footprints and hurricane return intervals in order to identify gaps in our understanding of risk and our ability to assess it. Analyses revealed that the general geographic coverage of SET-MH stations is limited given the low percentage of marsh patches with stations, low density of stations, the clumped distribution of stations, and the often limited and uneven distribution of stations in wetlands with a high historical frequency of hurricane strikes and storm surge impacts. These findings can be used by managers and planners to inform the creation of a strategic monitoring network that can, in turn, inform management and adaptation plans for coastal resources in the region. Final plan designs will need to consider financial and infrastructural support required for station maintenance, as well as data collection and management over the long term.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20181142","usgsCitation":"Cahoon, D.R., Olker, J.H., Yeates, A.G., Guntenspergen, G.R., Grace, J.B., Adamowicz, S.C., Anisfeld, S., Baldwin, A.H., Barrett, N., Beckett, L., Benzecry, A., Blum, L.K., Burdick, D.M., Crouch, W., Ekberg, M.C., Fernald, S., Grimes, K.W., Grzyb, J., Hartig, E.K., Kreeger, D.A., Larson, M., Lerberg, S., Lynch, J.C., Maher, N., Maxwell-Doyle, M., Mitchell, L.R., Mora, J., O’Neill, V., Padeletti, A., Prosser, D., Quirk, T., Raposa, K.B., Reay, W.G., Siok, D., Snow, C., Starke, A., Staver, L., Stevenson, J.C., and Turner, V., 2019, Hurricane Sandy impacts on coastal wetland resilience: U.S. Geological Survey Open-File Report 2018–1142, 117 p., https://doi.org/10.3133/ofr20181142.","productDescription":"xii, 117 p.","ipdsId":"IP-089853","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true},{"id":50464,"text":"Eastern Ecological Science Center","active":true,"usgs":true}],"links":[{"id":362852,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2018/1142/ofr20181142.pdf","text":"Report","size":"30.1 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2018-1142"},{"id":362851,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2018/1142/coverthb1.jpg"}],"country":"United States","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -93.251953125,\n              17.811456088564483\n            ],\n            [\n              -70.9716796875,\n              17.811456088564483\n            ],\n            [\n              -70.9716796875,\n              41.07935114946899\n            ],\n            [\n              -93.251953125,\n              41.07935114946899\n            ],\n            [\n              -93.251953125,\n              17.811456088564483\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p>Director, <a href=\"https://www.usgs.gov/centers/eesc\" data-mce-href=\"https://www.usgs.gov/centers/eesc\">Eastern Ecological Science Center</a><br>U.S. Geological Survey<br>12311 Beech Forest Road<br>Laurel, MD 20708</p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Inventory and Distribution of SET-MH Stations Along the Atlantic Coast</li><li>Data Formatting and Analyses</li><li>Location and Distribution of Stations</li><li>Metadata Summary</li><li>Hurricane Sandy Effects on Coastal Marsh Elevation Change</li><li>Introduction</li><li>Methods</li><li>Results</li><li>Discussion</li><li>Factors to Consider in Development of a Strategic Monitoring Framework</li><li>Methods</li><li>Incorporating Risk—Data Sources and Application</li><li>Results</li><li>Discussion</li><li>Conclusions</li><li>References Cited</li><li>Glossary</li><li>Appendix 1. The Surface Elevation Table-Marker Horizon Method</li><li>Appendix 2. SET-MH Metadata Spreadsheet</li><li>Appendix 3. Best Model Summaries</li></ul>","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"publishedDate":"2019-04-10","noUsgsAuthors":false,"publicationDate":"2019-04-10","publicationStatus":"PW","contributors":{"authors":[{"text":"Cahoon, Donald R. 0000-0002-2591-5667","orcid":"https://orcid.org/0000-0002-2591-5667","contributorId":208039,"corporation":false,"usgs":true,"family":"Cahoon","given":"Donald R.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":745766,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Olker, Jennifer H.","contributorId":208040,"corporation":false,"usgs":false,"family":"Olker","given":"Jennifer","email":"","middleInitial":"H.","affiliations":[{"id":6915,"text":"University of Minnesota - Duluth","active":true,"usgs":false}],"preferred":false,"id":745767,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Yeates, Alice 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,{"id":70203228,"text":"70203228 - 2019 - Implementation of an occupancy-based monitoring protocol for a wide-spread and cryptic species, the New England cottontail Sylvilagus transitionalis","interactions":[],"lastModifiedDate":"2019-05-02T08:05:41","indexId":"70203228","displayToPublicDate":"2019-04-10T07:48:15","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3777,"text":"Wildlife Research","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Implementation of an occupancy-based monitoring protocol for a wide-spread and cryptic species, the New England cottontail <i>Sylvilagus transitionalis</i>","title":"Implementation of an occupancy-based monitoring protocol for a wide-spread and cryptic species, the New England cottontail Sylvilagus transitionalis","docAbstract":"<p><span>Designing effective long-term monitoring strategies is essential for managing wildlife populations. Implementing a cost-effective, practical monitoring program is especially challenging for widespread but locally rare species. Early successional habitat preferred by the New England cottontail (NEC) has become increasingly rare and fragmented, resulting in substantial declines from their peak distribution in the mid-1900s. The introduction of a possible competitor species, the eastern cottontail (EC), may also have played a role. Uncertainty surrounding how these factors have contributed to NEC declines has complicated management and necessitated development of an appropriate monitoring framework to understand possible drivers of distribution and dynamics.</span></p>","language":"English","publisher":"CSIRO","doi":"10.1071/WR18058","usgsCitation":"Shea, C.P., Eaton, M.J., and MacKenzie, D.I., 2019, Implementation of an occupancy-based monitoring protocol for a wide-spread and cryptic species, the New England cottontail Sylvilagus transitionalis: Wildlife Research, https://doi.org/10.1071/WR18058.","ipdsId":"IP-088955","costCenters":[{"id":565,"text":"Southeast Climate Science Center","active":true,"usgs":true}],"links":[{"id":467712,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1071/wr18058","text":"Publisher Index Page"},{"id":363418,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Shea, Colin P.","contributorId":140147,"corporation":false,"usgs":false,"family":"Shea","given":"Colin","email":"","middleInitial":"P.","affiliations":[{"id":13267,"text":"Warnell School of Forestry and Natural Resources, University of Georgia","active":true,"usgs":false}],"preferred":false,"id":761792,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Eaton, Mitchell J. 0000-0001-7324-6333","orcid":"https://orcid.org/0000-0001-7324-6333","contributorId":213526,"corporation":false,"usgs":true,"family":"Eaton","given":"Mitchell","middleInitial":"J.","affiliations":[{"id":565,"text":"Southeast Climate Science Center","active":true,"usgs":true}],"preferred":true,"id":761791,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"MacKenzie, Darryl I.","contributorId":194669,"corporation":false,"usgs":false,"family":"MacKenzie","given":"Darryl","email":"","middleInitial":"I.","affiliations":[],"preferred":false,"id":761793,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70203097,"text":"70203097 - 2019 - Annual survival, site fidelity, and longevity in the eastern coastal population of the Painted Bunting (Passerina ciris) based on a 20-year mark-recapture/resighting study","interactions":[],"lastModifiedDate":"2019-04-19T16:30:36","indexId":"70203097","displayToPublicDate":"2019-04-09T16:27:39","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3784,"text":"Wilson Journal of Ornithology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Annual survival, site fidelity, and longevity in the eastern coastal population of the Painted Bunting (<i>Passerina ciris)</i> based on a 20-year mark-recapture/resighting study","title":"Annual survival, site fidelity, and longevity in the eastern coastal population of the Painted Bunting (Passerina ciris) based on a 20-year mark-recapture/resighting study","docAbstract":"A long-term study of annual survival, longevity, and site fidelity in the eastern coastal population of the Painted Bunting (Passerina ciris) during the breeding season was conducted from 1999 through 2018 in the outer coastal plain of the southeastern Atlantic coast of the United States. Painted Buntings were uniquely color-banded from 1999 through 2003 at 40 study sites that were paired at 20 locations from southeastern North Carolina south to northeastern Florida. Survival analysis used capture histories through 2005 for 994 birds banded as hatch-year and 2420 birds banded as post-hatch-year (adults). Annual estimates of apparent survival (1999-2004) averaged 0.71 and 0.66 for adult males and females, respectively, and 0.33 for hatch-year birds. We did not find evidence that survival differed in relation to latitude or extent of human development near study sites, although estimates for adult females were higher for birds banded on sheltered islands compared to the mainland. Expected time in the population, based on estimated survival, was 3.9 and 3.4 years for adult males and females, respectively. The oldest observed birds were a 14-year old male observed in June 2016 at Harris Neck NWR, Georgia, the site at which he had been banded in July 2003 as a second-year bird, and a 13-year old male seen at Ft. George Island, Florida in June 2016, 2 km across a tidal estuary from the site where the bird was banded in August 2003 as hatch-year. The males were sighted at these two sites in 9 and 11 different years, respectively. Overall, 78% (males) and 81% (females) of re-sightings and re-captures of birds banded as adults occurred at the same study site where individuals were banded, compared to 59% (males) and 60% (females) of birds banded as hatch-year. Known mortalities of banded buntings included nine birds trapped for the caged-bird trade. This study shows the potential for high survival and longevity in the eastern coastal population of the Painted Bunting, and given evidence of high site fidelity in the breeding range, the vulnerability of the population to human development along the southeastern U.S. coast as well as to illegal trapping.","language":"English","publisher":"Wilson Ornithological Society","doi":"10.1676/18-56","usgsCitation":"Sykes, P.W., Freeman, M., Sykes, J.J., Seginak, J.T., M. David Oleyar, and Egan, J.P., 2019, Annual survival, site fidelity, and longevity in the eastern coastal population of the Painted Bunting (Passerina ciris) based on a 20-year mark-recapture/resighting study: Wilson Journal of Ornithology, v. 131, no. 1, p. 96-110, https://doi.org/10.1676/18-56.","productDescription":"15 p.","startPage":"96","endPage":"110","ipdsId":"IP-093478","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":363086,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","volume":"131","issue":"1","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Sykes, Paul W.","contributorId":214917,"corporation":false,"usgs":false,"family":"Sykes","given":"Paul","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":761160,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Freeman, Mary 0000-0001-7615-6923 mcfreeman@usgs.gov","orcid":"https://orcid.org/0000-0001-7615-6923","contributorId":3528,"corporation":false,"usgs":true,"family":"Freeman","given":"Mary","email":"mcfreeman@usgs.gov","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":761159,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sykes, Joan J.","contributorId":214918,"corporation":false,"usgs":false,"family":"Sykes","given":"Joan","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":761161,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Seginak, John T.","contributorId":191445,"corporation":false,"usgs":false,"family":"Seginak","given":"John","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":761162,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"M. David Oleyar","contributorId":214919,"corporation":false,"usgs":false,"family":"M. David Oleyar","affiliations":[],"preferred":false,"id":761163,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Egan, Joshua P.","contributorId":214920,"corporation":false,"usgs":false,"family":"Egan","given":"Joshua","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":761164,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70204090,"text":"70204090 - 2019 - The complex spatial distribution of trichloroethene and the probability of NAPL occurrence in the rock matrix of a mudstone aquifer","interactions":[],"lastModifiedDate":"2019-07-03T16:02:34","indexId":"70204090","displayToPublicDate":"2019-04-09T15:41:43","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2233,"text":"Journal of Contaminant Hydrology","active":true,"publicationSubtype":{"id":10}},"title":"The complex spatial distribution of trichloroethene and the probability of NAPL occurrence in the rock matrix of a mudstone aquifer","docAbstract":"<p><span>Methanol&nbsp;extractions for chloroethene analyses are conducted on rock samples from seven closely spaced coreholes in a&nbsp;mudstone&nbsp;aquifer&nbsp;that was subject to releases of the&nbsp;nonaqueous phase liquid&nbsp;(NAPL) form of&nbsp;trichloroethene&nbsp;(TCE) between the 1950's and 1990's. Although&nbsp;TCE&nbsp;concentration in the rock matrix over the length of coreholes is dictated by&nbsp;proximity&nbsp;to subhorizontal&nbsp;bedding planefractures, elevated TCE concentrations in the rock matrix are not continuous along the most permeable bedding plane fractures. A complex configuration of subvertical and subhorizontal fractures appears to be responsible for the TCE distribution from prior TCE releases at land surface. Phase partitioning calculations of TCE in the rock matrix show that most TCE is adsorbed to solid surfaces because of the large fraction of&nbsp;organic carbon&nbsp;(</span><i>f</i><sub><i>oc</i></sub><span>) in the mudstone. Large TCE content in some cores indicate the likely presence of the&nbsp;NAPL&nbsp;form of TCE in the rock matrix. Using average values of porosity (</span><i>n</i><span>) and&nbsp;</span><i>f</i><sub><i>oc</i></sub><span>&nbsp;in phase partitioning calculations identifies a number of locations of possible NAPL occurrence in the rock matrix. Samples of mudstone analyzed for&nbsp;</span><i>n</i><span>&nbsp;and&nbsp;</span><i>f</i><sub><i>oc</i></sub><span>&nbsp;show variability in these properties over several orders of magnitude. Accounting for this variability in phase partitioning calculations identifies a probability of NAPL occurrence,&nbsp;</span><i>P</i><sub><i>NAPL</i></sub><span>. The&nbsp;spatial variability&nbsp;of&nbsp;</span><i>P</i><sub><i>NAPL</i></sub><span>&nbsp;along coreholes identifies a configuration that may be attributed to a TCE source zone that has evolved after&nbsp;emplacement&nbsp;due to NAPL dissolution, adsorption, and matrix diffusion.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.jconhyd.2019.04.001","usgsCitation":"Shapiro, A.M., Goode, D.J., Imbrigiotta, T.E., Lorah, M.M., and Tiedeman, C.R., 2019, The complex spatial distribution of trichloroethene and the probability of NAPL occurrence in the rock matrix of a mudstone aquifer: Journal of Contaminant Hydrology, v. 233, 103478; 14 p., https://doi.org/10.1016/j.jconhyd.2019.04.001.","productDescription":"103478; 14 p.","ipdsId":"IP-103048","costCenters":[{"id":374,"text":"Maryland Water Science Center","active":true,"usgs":true},{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true},{"id":532,"text":"Pennsylvania Water Science Center","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"links":[{"id":467713,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.jconhyd.2019.04.001","text":"Publisher Index Page"},{"id":437502,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7P55MD8","text":"USGS data release","linkHelpText":"Concentrations of Chlorinated Ethene Compounds in Rock Core Collected from the Mudstone Underlying the former Naval Air Warfare Center, West Trenton, New Jersey"},{"id":365294,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"New Jersey","city":"West Trenton","otherGeospatial":"Newark Basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -74.8144268989563,\n              40.268196648437474\n            ],\n            [\n              -74.80998516082764,\n              40.26757447962916\n            ],\n            [\n              -74.80850458145142,\n              40.2704560554525\n            ],\n            [\n              -74.81170177459717,\n              40.272715386988686\n            ],\n            [\n              -74.81320381164551,\n              40.27173307820388\n            ],\n            [\n              -74.8144268989563,\n              40.268196648437474\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"233","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Shapiro, Allen M. 0000-0002-6425-9607 ashapiro@usgs.gov","orcid":"https://orcid.org/0000-0002-6425-9607","contributorId":2164,"corporation":false,"usgs":true,"family":"Shapiro","given":"Allen","email":"ashapiro@usgs.gov","middleInitial":"M.","affiliations":[{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":765432,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Goode, Daniel J. 0000-0002-8527-2456 djgoode@usgs.gov","orcid":"https://orcid.org/0000-0002-8527-2456","contributorId":193394,"corporation":false,"usgs":true,"family":"Goode","given":"Daniel","email":"djgoode@usgs.gov","middleInitial":"J.","affiliations":[{"id":532,"text":"Pennsylvania Water Science Center","active":true,"usgs":true},{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true}],"preferred":false,"id":765433,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Imbrigiotta, Thomas E. 0000-0003-1716-4768 timbrig@usgs.gov","orcid":"https://orcid.org/0000-0003-1716-4768","contributorId":152114,"corporation":false,"usgs":true,"family":"Imbrigiotta","given":"Thomas","email":"timbrig@usgs.gov","middleInitial":"E.","affiliations":[{"id":470,"text":"New Jersey Water Science Center","active":true,"usgs":true}],"preferred":true,"id":765434,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lorah, Michelle M. 0000-0002-9236-587X","orcid":"https://orcid.org/0000-0002-9236-587X","contributorId":216751,"corporation":false,"usgs":true,"family":"Lorah","given":"Michelle","email":"","middleInitial":"M.","affiliations":[{"id":374,"text":"Maryland Water Science Center","active":true,"usgs":true}],"preferred":true,"id":765435,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Tiedeman, Claire R. 0000-0002-0128-3685 tiedeman@usgs.gov","orcid":"https://orcid.org/0000-0002-0128-3685","contributorId":196777,"corporation":false,"usgs":true,"family":"Tiedeman","given":"Claire","email":"tiedeman@usgs.gov","middleInitial":"R.","affiliations":[{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":765436,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70202017,"text":"ofr20181180 - 2019 - Optimizing historical preservation under climate change—An overview of the optimal preservation model and pilot testing at Cape Lookout National Seashore","interactions":[],"lastModifiedDate":"2019-04-10T15:51:15","indexId":"ofr20181180","displayToPublicDate":"2019-04-09T13:45:00","publicationYear":"2019","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2018-1180","displayTitle":"Optimizing Historical Preservation Under Climate Change—An Overview of the Optimal Preservation Model and Pilot Testing at Cape Lookout National Seashore","title":"Optimizing historical preservation under climate change—An overview of the optimal preservation model and pilot testing at Cape Lookout National Seashore","docAbstract":"<p>Adapting cultural resources to climate-change effects challenges traditional cultural resource decision making because some adaptation strategies can negatively affect the integrity of cultural resources. Yet, the inevitability of climate-change effects—even given the uncertain timing of those effects—necessitates that managers begin prioritizing resources for climate-change adaptation. Prioritization imposes an additional management challenge: managers must make difficult tradeoffs to achieve desired management outcomes related to maximizing the resource values. This report provides an overview of a pilot effort to integrate vulnerability (exposure and sensitivity), significance, and use potential metrics in a decision framework—the Optimal Preservation (OptiPres) Model—to inform climate adaptation planning of a subset of buildings in historic districts (listed on the National Register of Historic Places) at Cape Lookout National Seashore. The OptiPres Model uses a numerical optimization algorithm to assess the timing and application of a portfolio of adaptation actions that could most effectively preserve an assortment of buildings associated with different histories, intended uses, and construction design and materials over a 30-year planning horizon. The outputs from the different budget scenarios, though not prescriptive, provide visualizations of and insights to the sequence and type of optimal actions and the changes to individual building resource values and accumulated resource values. Study findings suggest the OptiPres Model has planning utility related to fiscal efficiency by identifying a budget threshold necessary to maintain the historical significance and use potential of historical buildings while reducing vulnerability (collectively, the accumulated resource value). Specifically, findings identify that a minimum of the industry standard ($222,000 annually for the 17 buildings) is needed to maintain the current accumulated resource value. Additionally, results suggest that additional appropriations provided on regular intervals when annual appropriations are at the industry standard are nearly as efficient as annual appropriations at twice the rate of industry standards and increase the amount of accumulated resource values to nearly the same level. However, periodic increases in funding may increase the risks posed to buildings from the probability of a natural hazard (that is, damage or loss from a hurricane). Suggestions for model refinements include developing standardized cost estimations for adaptation actions based on square footage and building materials, developing metrics to quantify the historical integrity of buildings, integrating social values data, including additional objectives (such as public safety) in the model, refining vulnerability data and transforming the data to include risk assessment, and incorporating stochastic events (that is, hurricane and wind effects) into the model.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20181180","collaboration":"Prepared in cooperation with the National Park Service","usgsCitation":"Seekamp, E., Post van der Burg, M., Fatorić, S., Eaton, M.J., Xiao, X., and McCreary, A., 2019, Optimizing historical preservation under climate change—An overview of the optimal preservation model and pilot testing at Cape Lookout National Seashore: U.S. Geological Survey Open-File Report 2018–1180, 46 p., https://doi.org/10.3133/ofr20181180.","productDescription":"vii, 46 p.","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-096582","costCenters":[{"id":565,"text":"Southeast Climate Science Center","active":true,"usgs":true}],"links":[{"id":362669,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2018/1180/ofr20181180.pdf","text":"Report","size":"4.45 MB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2018-1180"},{"id":362668,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2018/1180/coverthb.jpg"}],"country":"United States","state":"North Carolina","otherGeospatial":"Cape Lookout National Seashore","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -76.66397094726562,\n              34.699848377328934\n            ],\n            [\n              -76.67770385742188,\n              34.67274685882317\n            ],\n            [\n              -76.53213500976562,\n              34.557466483188996\n            ],\n            [\n              -76.02264404296875,\n              35.06147690849717\n            ],\n            [\n              -76.0638427734375,\n              35.09519259251624\n            ],\n            [\n              -76.53076171875,\n              34.66597009307397\n            ],\n            [\n              -76.66397094726562,\n              34.699848377328934\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"https://casc.usgs.gov/\" data-mce-href=\"https://casc.usgs.gov/\">National Climate Adaptation Science Center</a><br>U.S. Geological Survey<br>12201 Sunrise Valley Drive, Mail Stop 516<br>Reston, VA 20192<br>Email: <a href=\"mailto:casc@usgs.gov\" data-mce-href=\"mailto:casc@usgs.gov\">casc@usgs.gov</a></p>","tableOfContents":"<ul><li>Acknowledgments</li><li>Abstract</li><li>Introduction</li><li>Study Area</li><li>Model Development</li><li>The Optimal Preservation Model</li><li>Comparing Scenarios</li><li>Insights From The Pilot Study</li><li>Considerations For Advancing The Optipres Model</li><li>References Cited</li><li>Appendix 1. Optimal Preservation Model Objectives, Attributes, Weights, Actions, and Costs</li><li>Appendix 2. Value of Condition, Remaining Significance, and Use Potential for 17 Buildings Among Different Scenarios</li><li>Appendix 3. Computer Code for Optimal Preservation Model</li></ul>","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"publishedDate":"2019-04-09","noUsgsAuthors":false,"publicationDate":"2019-04-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Seekamp, Erin","contributorId":212832,"corporation":false,"usgs":false,"family":"Seekamp","given":"Erin","email":"","affiliations":[{"id":13595,"text":"NCSU","active":true,"usgs":false}],"preferred":false,"id":756703,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Post van der Burg, Max 0000-0002-3943-4194 maxpostvanderburg@usgs.gov","orcid":"https://orcid.org/0000-0002-3943-4194","contributorId":4947,"corporation":false,"usgs":true,"family":"Post van der Burg","given":"Max","email":"maxpostvanderburg@usgs.gov","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":756704,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Fatoric, Sandra","contributorId":212834,"corporation":false,"usgs":false,"family":"Fatoric","given":"Sandra","email":"","affiliations":[{"id":13595,"text":"NCSU","active":true,"usgs":false}],"preferred":false,"id":756705,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Eaton, Mitchell J. 0000-0001-7324-6333 meaton@usgs.gov","orcid":"https://orcid.org/0000-0001-7324-6333","contributorId":169429,"corporation":false,"usgs":true,"family":"Eaton","given":"Mitchell","email":"meaton@usgs.gov","middleInitial":"J.","affiliations":[{"id":565,"text":"Southeast Climate Science Center","active":true,"usgs":true}],"preferred":true,"id":756702,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Xiao, Xiao","contributorId":212835,"corporation":false,"usgs":false,"family":"Xiao","given":"Xiao","email":"","affiliations":[{"id":13595,"text":"NCSU","active":true,"usgs":false}],"preferred":false,"id":756706,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"McCreary, Allie","contributorId":212836,"corporation":false,"usgs":false,"family":"McCreary","given":"Allie","email":"","affiliations":[{"id":13595,"text":"NCSU","active":true,"usgs":false}],"preferred":false,"id":756707,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70205254,"text":"70205254 - 2019 - Revisiting the avian Eco-SSL for lead: Recommendations for revision","interactions":[],"lastModifiedDate":"2019-09-10T13:38:19","indexId":"70205254","displayToPublicDate":"2019-04-09T13:37:37","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2006,"text":"Integrated Environmental Assessment and Management","active":true,"publicationSubtype":{"id":10}},"title":"Revisiting the avian Eco-SSL for lead: Recommendations for revision","docAbstract":"The avian ecological soil screening level (Eco-SSL) for lead (11 mg/kg) is within soil background concentrations for >90% of the US. Consequently, its utility as a soil screening level is limited. Site-specific ecological risk-based remedial goals for lead are frequently many times greater. Toxicity reference values (TRVs) play a major role in defining Eco-SSLs. The lead Eco-SSL TRV is driven by reduced egg production in Japanese quail (Coturnix japonica), which displays effects at doses both substantially lower and greater than other tested species. High variability in egg production in Japanese quail has also been observed for other contaminants. Japanese quail egg production may therefore be to variable and unreliable an effect endpoint upon which to base regulatory screening criteria. Toxicity data supporting the Eco-SSL were re-evaluated and only studies reporting both no and lowest observed adverse effect levels (NOAELs and LOAELs) for reproduction, growth, or survival were considered. Dose-response data were extracted from 10 studies both as concentrations and doses. Dose-response relationships were developed using the USEPA Benchmark Dose Software for dietary concentrations and doses for egg production in Japanese quail and chickens. Effect levels (of 10%, 20%, and 50%) were extracted from the dose-response analyses. Species sensitivity distributions and dose-response data indicated reproduction was most sensitive to lead and survival was least sensitive, with growth intermediate. Limited data for ringed turtle doves (Streptopelia risoria) and American kestrels (Falco sparverius) suggests lower sensitivity than chickens to lead. ED10 and ED20 thresholds for chickens were 4.4 and 9.8 mg/kg/d, respectively. Avian lead Eco-SSLs were recalculated based on the chicken ED10 and ED20, with and without a bioavailability adjustment. Revised avian lead Eco-SSLs for the most highly exposed species (American woodcock), based on the ED10 and assuming 100% and 50% bioavailability, were 36.3 mg/kg and 43.7 mg/kg, respectively.","language":"English","publisher":"Wiley","doi":"10.1002/ieam.4157","usgsCitation":"Sample, B., Beyer, W.N., and Wentsel, R., 2019, Revisiting the avian Eco-SSL for lead: Recommendations for revision: Integrated Environmental Assessment and Management, v. 15, no. 5, p. 739-749, https://doi.org/10.1002/ieam.4157.","productDescription":"11 p.","startPage":"739","endPage":"749","ipdsId":"IP-102641","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":367322,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":367319,"type":{"id":15,"text":"Index Page"},"url":"https://setac.onlinelibrary.wiley.com/doi/abs/10.1002/ieam.4157"}],"volume":"15","issue":"5","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Sample, Bradley","contributorId":218867,"corporation":false,"usgs":false,"family":"Sample","given":"Bradley","affiliations":[{"id":39925,"text":"Ecological Risk, Inc.","active":true,"usgs":false}],"preferred":false,"id":770577,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Beyer, W. Nelson 0000-0002-8911-9141 nbeyer@usgs.gov","orcid":"https://orcid.org/0000-0002-8911-9141","contributorId":3301,"corporation":false,"usgs":true,"family":"Beyer","given":"W.","email":"nbeyer@usgs.gov","middleInitial":"Nelson","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":770576,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Wentsel, Randall","contributorId":218868,"corporation":false,"usgs":false,"family":"Wentsel","given":"Randall","email":"","affiliations":[],"preferred":false,"id":770578,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70205179,"text":"70205179 - 2019 - Regional protocol framework for the inventory and monitoring of breeding Atlantic Coast Piping Plovers","interactions":[],"lastModifiedDate":"2019-09-05T11:53:23","indexId":"70205179","displayToPublicDate":"2019-04-09T11:04:42","publicationYear":"2019","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":1,"text":"Federal Government Series"},"seriesTitle":{"id":5856,"text":"Regional Protocol Framework","active":true,"publicationSubtype":{"id":1}},"title":"Regional protocol framework for the inventory and monitoring of breeding Atlantic Coast Piping Plovers","docAbstract":"<p>This regional protocol provides a framework for quantifying the number of breeding pairs and&nbsp;productivity of Atlantic Coast piping plover (Charadrius melodus) populations during the&nbsp;breeding season. A primary purpose of this protocol is to standardize piping plover monitoring&nbsp;during the breeding season. The survey techniques described herein involve repeated visual&nbsp;counts of adults, nests, eggs, and chicks within a defined survey site (i.e., beach) as well as visual&nbsp;identification of potential threats to survival and productivity. Resulting data can be compiled&nbsp;and analyzed across multiple geographic units (i.e., sites, states, and recovery units) to assess&nbsp;progress toward recovery goals, inform local management decisions, assess management&nbsp;effectiveness, and improve monitoring efforts.&nbsp;This protocol framework was developed as part of the United States Fish and Wildlife Service&nbsp;(USFWS) National Wildlife Refuge System (NWRS) Inventory and Monitoring (I&amp;M) Initiative&nbsp;in coordination with Ecological Services (ES) and state coordinators within the Southeast and&nbsp;Northeast Regions (4 and 5, respectively). Although this protocol framework is to be used&nbsp;primarily by NWRS to inform recovery goals, assist with local management decision-making,&nbsp;and meet State reporting requirements, the approach strives to assist monitoring efforts of nonNWRS partners, such as other federal agencies (e.g. National Park Service), State wildlife&nbsp;agencies, non-governmental organizations, and private landowners. This protocol framework and&nbsp;associated data management system (PIPLweb) aims to interface with existing data management&nbsp;and analysis tools (i.e., PIPLODES, NestStory, and PiperEx) to ensure that data collection is<br>efficient and comparable across scales, and supports management decisions across partners.&nbsp;The content and structure of the protocol framework follows standards set forth in the USFWS’s&nbsp;How to Develop Survey Protocols: A Handbook (Version 1.0; 2013). The eight elements&nbsp;addressed include: introduction, sampling design, field methods, data management and analysis,&nbsp;reporting, personnel requirements and training, operational requirements, and references. A&nbsp;series of standard operating procedures (SOPs) provides greater detail on recommended methods&nbsp;and technical aspects of this protocol. Data entry, archival, and multi-scale analysis are handled&nbsp;through a secure web application (Plover Inventory and Productivity Library; PIPLweb)&nbsp;developed by the United States Geological Survey (USGS). When management activities and&nbsp;survey objectives are similar across management units, partners (Refuges, other federal agencies,&nbsp;State, NGOs, private) are encouraged to use this protocol framework to develop stepped-down<br>site-specific survey protocols that include guidance for conducting on-the-ground monitoring and&nbsp;management plans. </p>","language":"English","publisher":"U. S. Fish and Wildlife Service","usgsCitation":"King, E., Katz, R.A., Iaquinto, K.E., Suir, K.J., Baldwin, M., and Hecht, A., 2019, Regional protocol framework for the inventory and monitoring of breeding Atlantic Coast Piping Plovers: Regional Protocol Framework, vii, 57 p.","productDescription":"vii, 57 p.","ipdsId":"IP-095657","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":367215,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":367214,"rank":1,"type":{"id":15,"text":"Index Page"},"url":"https://ecos.fws.gov/ServCat/Reference/Profile/110791"}],"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"King, Erin","contributorId":218783,"corporation":false,"usgs":false,"family":"King","given":"Erin","email":"","affiliations":[],"preferred":false,"id":770246,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Katz, Rachel A.","contributorId":149995,"corporation":false,"usgs":false,"family":"Katz","given":"Rachel","email":"","middleInitial":"A.","affiliations":[{"id":17882,"text":"Odum School of Ecology, University of Georgia","active":true,"usgs":false}],"preferred":false,"id":770247,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Iaquinto, Kate E.","contributorId":218784,"corporation":false,"usgs":false,"family":"Iaquinto","given":"Kate","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":770248,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Suir, Kevin J. 0000-0003-1570-9648 suirk@usgs.gov","orcid":"https://orcid.org/0000-0003-1570-9648","contributorId":4894,"corporation":false,"usgs":true,"family":"Suir","given":"Kevin","email":"suirk@usgs.gov","middleInitial":"J.","affiliations":[{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":770249,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Baldwin, M.J. 0000-0002-7865-6590 baldwinm@usgs.gov","orcid":"https://orcid.org/0000-0002-7865-6590","contributorId":146154,"corporation":false,"usgs":true,"family":"Baldwin","given":"M.J.","email":"baldwinm@usgs.gov","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true}],"preferred":true,"id":770250,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hecht, A.","contributorId":99525,"corporation":false,"usgs":false,"family":"Hecht","given":"A.","email":"","affiliations":[],"preferred":false,"id":770251,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70227747,"text":"70227747 - 2019 - Louisiana Waterthrush (Parkesia motacilla) survival and site fidelity in an area undergoing shale gas development","interactions":[],"lastModifiedDate":"2022-01-28T15:45:42.288767","indexId":"70227747","displayToPublicDate":"2019-04-09T09:40:31","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3784,"text":"Wilson Journal of Ornithology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Louisiana Waterthrush (<i>Parkesia motacilla</i>) survival and site fidelity in an area undergoing shale gas development","title":"Louisiana Waterthrush (Parkesia motacilla) survival and site fidelity in an area undergoing shale gas development","docAbstract":"<p><span>We quantified Louisiana Waterthrush (</span><i>Parkesia motacilla</i><span>) site fidelity and apparent survival across a 6 year period in an area undergoing shale gas development.Waterthrush initially exhibited high site fidelity that declined over time. At the same time, the number of unpaired males defending territories increased as did natal fidelity. We identified site fidelity factors that influenced if adult males and females returned. More males returned either due to or regardless of amount of shale gas disturbance and lower riparian habitat quality. Females were less likely to return with increased number of breeding attempts. Females in shale gas disturbed areas had a higher number of breeding attempts and lower individual productivity. We saw a general nonsignificant trend in declining apparent survival over time. Overall apparent survival estimates for adult males (0.56) and females (0.44) were similar to those reported for other populations. Apparent survival candidate models suggested weak, positive relationships of increased survival with shale gas territory disturbance, disturbance with year, and year for adult males, and a positive relationship of increased survival with hydraulic fracturing runoff for adult females although regression coefficients overlapped zero for all model-supported covariates implying no statistical significance. Since waterthrush can maintain pair bonds from the previous year and females must pick a nest site within the defended male's territory, there are potential conflicts between factors that influence adult survival and site fidelity that may affect long-term population persistence. Our study adds to previous evidence that shale gas disturbed areas may serve as sink habitats.</span></p>","language":"English","publisher":"Wilson Ornithological Society","doi":"10.1676/18-6","usgsCitation":"Frantz, M.W., Wood, P.B., Sheehan, J., and George, G., 2019, Louisiana Waterthrush (Parkesia motacilla) survival and site fidelity in an area undergoing shale gas development: Wilson Journal of Ornithology, v. 13, no. 1, p. 84-95, https://doi.org/10.1676/18-6.","productDescription":"12 p.","startPage":"84","endPage":"95","ipdsId":"IP-090682","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":395062,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"West Virginia","county":"Wetzel County","otherGeospatial":"Lewis Wetzel Wildlife Management Area","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -80.71311950683594,\n              39.43407169253772\n            ],\n            [\n              -80.57304382324219,\n              39.43407169253772\n            ],\n            [\n              -80.57304382324219,\n              39.546941396253146\n            ],\n            [\n              -80.71311950683594,\n              39.546941396253146\n            ],\n            [\n              -80.71311950683594,\n              39.43407169253772\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"13","issue":"1","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Frantz, Mack W.","contributorId":272515,"corporation":false,"usgs":false,"family":"Frantz","given":"Mack","email":"","middleInitial":"W.","affiliations":[{"id":12432,"text":"West Virginia University","active":true,"usgs":false}],"preferred":false,"id":832021,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wood, Petra B. 0000-0002-8575-1705 pbwood@usgs.gov","orcid":"https://orcid.org/0000-0002-8575-1705","contributorId":199090,"corporation":false,"usgs":true,"family":"Wood","given":"Petra","email":"pbwood@usgs.gov","middleInitial":"B.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":832020,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sheehan, James","contributorId":272516,"corporation":false,"usgs":false,"family":"Sheehan","given":"James","affiliations":[{"id":12432,"text":"West Virginia University","active":true,"usgs":false}],"preferred":false,"id":832022,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"George, Gregory","contributorId":272517,"corporation":false,"usgs":false,"family":"George","given":"Gregory","affiliations":[{"id":12432,"text":"West Virginia University","active":true,"usgs":false}],"preferred":false,"id":832023,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70205074,"text":"70205074 - 2019 - Sampling designs for landscape-level eDNA monitoring programs using three-level occurrence models","interactions":[],"lastModifiedDate":"2019-08-29T08:57:05","indexId":"70205074","displayToPublicDate":"2019-04-09T08:55:49","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2006,"text":"Integrated Environmental Assessment and Management","active":true,"publicationSubtype":{"id":10}},"title":"Sampling designs for landscape-level eDNA monitoring programs using three-level occurrence models","docAbstract":"Resource managers conduct landscape-level monitoring using environmental DNA (eDNA). These managers must contend with imperfect detection in samples and sub-samples (i.e., molecular analyses). This imperfect detection impacts their ability to both detect species and estimate occurrence. Although occurrence (synonymously occupancy) models can estimate these probabilities, most models and guidance for their application do not consider three levels. We studied this with three aims. First, we examined the number of samples required to detect a species at a site given imperfect detection. Second, we examined the ability of a three-level occurrence model to recover parameter estimates. Third, we examined the number of samples required to reliably recover parameter estimates. We found detecting eDNA in 1 sample at a site required 12 samples under most condition, but detection eDNA in situations that might be expected when looking for species at very low abundance required >50 samples. We found our occupancy model generally recovered known parameters unless detection and sample occurrence probabilities were <0.3. In these situations, >50 samples per site and 8 molecular replicates were required. Conversely, estimating and comparing occurrence and detection probabilities for species with moderate to high abundance may require 4 molecular replicates and 20-30 samples per site. More broadly, our findings illustrate the importance of study design, sample sizes, and molecular replicates for eDNA-based research, monitoring, and management.","language":"English","publisher":"Wiley","doi":"10.1002/ieam.4155","usgsCitation":"Erickson, R.A., Merkes, C.M., and Mize, E.L., 2019, Sampling designs for landscape-level eDNA monitoring programs using three-level occurrence models: Integrated Environmental Assessment and Management, v. 15, no. 5, p. 760-771, https://doi.org/10.1002/ieam.4155.","productDescription":"12 p.","startPage":"760","endPage":"771","ipdsId":"IP-090372","costCenters":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":437503,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9WRFUDQ","text":"USGS data release","linkHelpText":"Sampling designs for landscape-level eDNA monitoring programs using three-level occurrence models: Data"},{"id":367044,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":367042,"type":{"id":15,"text":"Index Page"},"url":"https://doi.org/10.1002/ieam.4155"}],"volume":"15","issue":"5","publishingServiceCenter":{"id":15,"text":"Madison PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-09","publicationStatus":"PW","contributors":{"authors":[{"text":"Erickson, Richard A. 0000-0003-4649-482X rerickson@usgs.gov","orcid":"https://orcid.org/0000-0003-4649-482X","contributorId":5455,"corporation":false,"usgs":true,"family":"Erickson","given":"Richard","email":"rerickson@usgs.gov","middleInitial":"A.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":769857,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Merkes, Christopher M. 0000-0001-8191-627X cmerkes@usgs.gov","orcid":"https://orcid.org/0000-0001-8191-627X","contributorId":139516,"corporation":false,"usgs":true,"family":"Merkes","given":"Christopher","email":"cmerkes@usgs.gov","middleInitial":"M.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":769858,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mize, Erica L.","contributorId":217242,"corporation":false,"usgs":false,"family":"Mize","given":"Erica","email":"","middleInitial":"L.","affiliations":[{"id":39581,"text":"Whitney Genetics Laboratory, Midwest Fisheries Center, U.S. Fish and Wildlife Service, 555 Lester Avenue, Onalaska, WI USA","active":true,"usgs":false}],"preferred":false,"id":769859,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70223298,"text":"70223298 - 2019 - Novel ectoparasite infestation on Yuma ridgway's rails (Rallus obsoletus yumanensis)","interactions":[],"lastModifiedDate":"2021-08-20T13:48:37.941562","indexId":"70223298","displayToPublicDate":"2019-04-09T08:37:38","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3784,"text":"Wilson Journal of Ornithology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Novel ectoparasite infestation on Yuma ridgway's rails (<i>Rallus obsoletus yumanensis</i>)","title":"Novel ectoparasite infestation on Yuma ridgway's rails (Rallus obsoletus yumanensis)","docAbstract":"<p><span>Yuma Ridgway's Rails (</span><i>Rallus obsoletus yumanensis</i><span>) are federally endangered birds endemic to wetlands throughout the Lower Colorado River Basin in Nevada, California, Arizona, and Mexico. The U.S. population has declined in recent years for unknown reasons. We documented a novel and severe chigger mite infestation in the Yuma Ridgway's Rails in southwestern Arizona in 2017. Prevalence of the infestation was spatially heterogeneous: 92% (48 of 52) of the Yuma Ridgway's Rails that we captured at Imperial National Wildlife Refuge were infested, whereas only 11% (2 of 18) of the Yuma Ridgway's Rails at Cibola National Wildlife Refuge were chigger infested. We know little about the origin of this infestation or the impacts of the parasites on the behavior and fitness of Yuma Ridgway's Rails. However, ectoparasite infestations in other species have caused population declines and the intensity and novelty of this ectoparasite infestation, combined with population status of this species, warrants immediate attention to this issue and further study of these ectoparasites.</span></p>","language":"English","publisher":"Wilson Ornithological Society","doi":"10.1676/18-55","usgsCitation":"Harrity, E.J., and Conway, C.J., 2019, Novel ectoparasite infestation on Yuma ridgway's rails (Rallus obsoletus yumanensis): Wilson Journal of Ornithology, v. 131, no. 1, p. 139-146, https://doi.org/10.1676/18-55.","productDescription":"8 p.","startPage":"139","endPage":"146","ipdsId":"IP-101657","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"links":[{"id":388229,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Mexico, United States","state":"Arizona, California","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -115.916748046875,\n              32.25926542645933\n            ],\n            [\n              -114.0380859375,\n              32.25926542645933\n            ],\n            [\n              -114.0380859375,\n              34.470335121217474\n            ],\n            [\n              -115.916748046875,\n              34.470335121217474\n            ],\n            [\n              -115.916748046875,\n              32.25926542645933\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"131","issue":"1","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Harrity, Eamon J.","contributorId":264532,"corporation":false,"usgs":false,"family":"Harrity","given":"Eamon","email":"","middleInitial":"J.","affiliations":[{"id":39599,"text":"ui","active":true,"usgs":false}],"preferred":false,"id":821641,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Conway, Courtney J. 0000-0003-0492-2953 cconway@usgs.gov","orcid":"https://orcid.org/0000-0003-0492-2953","contributorId":2951,"corporation":false,"usgs":true,"family":"Conway","given":"Courtney","email":"cconway@usgs.gov","middleInitial":"J.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":821642,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70220506,"text":"70220506 - 2019 - Stratigraphic occurrences of sub-polar planktic foraminifera in pleistocene sediments on the Lomonosov Ridge, Arctic Ocean","interactions":[],"lastModifiedDate":"2021-05-19T12:10:19.951581","indexId":"70220506","displayToPublicDate":"2019-04-09T07:29:51","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5232,"text":"Frontiers in Earth Science","onlineIssn":"2296-6463","active":true,"publicationSubtype":{"id":10}},"title":"Stratigraphic occurrences of sub-polar planktic foraminifera in pleistocene sediments on the Lomonosov Ridge, Arctic Ocean","docAbstract":"Turborotalita quinqueloba is a species of planktic foraminifera commonly found in the sub-polar North Atlantic along the pathway of Atlantic waters in the Nordic seas and sometimes even in the Arctic Ocean, although its occurrence there remains poorly understood. Existing data show that T. quinqueloba is scarce in Holocene sediments from the central Arctic but abundance levels increase in sediments from the last interglacial period [Marine isotope stage (MIS) 5, 71–120 ka] in cores off the northern coast of Greenland and the southern Mendeleev Ridge. Turborotalita also occurs in earlier Pleistocene interglacials in these regions, with a unique and widespread occurrence of the less known Turborotalita egelida morphotype, proposed as a biostratigraphic marker for MIS 11 (474–374 ka). Here we present results from six new sediment cores, extending from the central to western Lomonosov Ridge, that show a consistent Pleistocene stratigraphy over 575 km. Preliminary semi-quantitative assessments of planktic foraminifer abundance and assemblage composition in two of these records (LOMROG12-7PC and AO16-5PC) reveal two distinct stratigraphic horizons containing Turborotalita in MIS 5. Earlier occurrences in Pleistocene interglacials are recognized, but contain significantly fewer specimens and do not appear to be stratigraphically coeval in the studied sequences. In all instances, the Turborotalita specimens resemble the typical T. quinqueloba morphotype but are smaller (63–125 μm), smooth-walled and lack the final thickened calcite layer common to adults of the species. These results extend the geographical range for T. quinqueloba in MIS 5 sediments of the Arctic Ocean and provide compelling evidence for recurrent invasions during Pleistocene interglacials.","language":"English","publisher":"Frontiers","doi":"10.3389/feart.2019.00071","usgsCitation":"O’Regan, M., Coxall, H., Cronin, T.M., Gyllencreutz, R., Jakobsson, M., Kaboth, S., Lowemark, L., Wiers, S., and West, G., 2019, Stratigraphic occurrences of sub-polar planktic foraminifera in pleistocene sediments on the Lomonosov Ridge, Arctic Ocean: Frontiers in Earth Science, v. 7, 71, 18 p., https://doi.org/10.3389/feart.2019.00071.","productDescription":"71, 18 p.","onlineOnly":"Y","ipdsId":"IP-106073","costCenters":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true}],"links":[{"id":467714,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3389/feart.2019.00071","text":"Publisher Index Page"},{"id":385702,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Arctic Ocean","volume":"7","noUsgsAuthors":false,"publicationDate":"2019-04-09","publicationStatus":"PW","contributors":{"authors":[{"text":"O’Regan, Matt","contributorId":197135,"corporation":false,"usgs":false,"family":"O’Regan","given":"Matt","email":"","affiliations":[{"id":25421,"text":"Department of Geological Sciences, Stockholm University, Sweden","active":true,"usgs":false}],"preferred":false,"id":815877,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Coxall, Helen","contributorId":166866,"corporation":false,"usgs":false,"family":"Coxall","given":"Helen","affiliations":[{"id":24562,"text":"Stockholm University","active":true,"usgs":false}],"preferred":false,"id":815878,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cronin, Thomas M. 0000-0002-2643-0979 tcronin@usgs.gov","orcid":"https://orcid.org/0000-0002-2643-0979","contributorId":2579,"corporation":false,"usgs":true,"family":"Cronin","given":"Thomas","email":"tcronin@usgs.gov","middleInitial":"M.","affiliations":[{"id":40020,"text":"Florence Bascom Geoscience Center","active":true,"usgs":true},{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true}],"preferred":true,"id":815849,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Gyllencreutz, Richard","contributorId":179157,"corporation":false,"usgs":false,"family":"Gyllencreutz","given":"Richard","email":"","affiliations":[],"preferred":false,"id":815879,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Jakobsson, Martin","contributorId":166854,"corporation":false,"usgs":false,"family":"Jakobsson","given":"Martin","email":"","affiliations":[{"id":24562,"text":"Stockholm University","active":true,"usgs":false}],"preferred":false,"id":815880,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Kaboth, Stefanie","contributorId":258170,"corporation":false,"usgs":false,"family":"Kaboth","given":"Stefanie","email":"","affiliations":[],"preferred":false,"id":815881,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Lowemark, Ludvig","contributorId":258171,"corporation":false,"usgs":false,"family":"Lowemark","given":"Ludvig","email":"","affiliations":[],"preferred":false,"id":815882,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Wiers, Steffen","contributorId":258172,"corporation":false,"usgs":false,"family":"Wiers","given":"Steffen","email":"","affiliations":[],"preferred":false,"id":815883,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"West, Gabriel","contributorId":258085,"corporation":false,"usgs":false,"family":"West","given":"Gabriel","email":"","affiliations":[],"preferred":false,"id":815884,"contributorType":{"id":1,"text":"Authors"},"rank":9}]}}
,{"id":70203686,"text":"70203686 - 2019 - Future directions to escalate benefits of stepping-stone approach for conservation translocations","interactions":[],"lastModifiedDate":"2019-06-05T15:13:45","indexId":"70203686","displayToPublicDate":"2019-04-08T15:12:23","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":774,"text":"Animal Conservation","active":true,"publicationSubtype":{"id":10}},"title":"Future directions to escalate benefits of stepping-stone approach for conservation translocations","docAbstract":"Through a reintroduction case study on the critically endangered Vancouver Island marmot (Marmota vancouverensis), we introduced a ‘stepping-stone’ approach which utilizes the transition of released individuals among populations to maximize demographic growth potential (Lloyd et al. 2019).  We greatly appreciate and hereby reflect on the thoughtful commentaries by Chauvenet (2019), Hayward (2019) and Thévenin (2019) to propose 3 key topics for future exploration.","language":"English","publisher":"Wiley","doi":"10.1111/acv.12506","usgsCitation":"Lloyd, N., Hostetter, N., Jackson, C., Converse, S.J., and Moehrenschlager, A., 2019, Future directions to escalate benefits of stepping-stone approach for conservation translocations: Animal Conservation, p. 122-123, https://doi.org/10.1111/acv.12506.","productDescription":"2 p.","startPage":"122","endPage":"123","ipdsId":"IP-106626","costCenters":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":467715,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/acv.12506","text":"Publisher Index Page"},{"id":364386,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Lloyd, N.A.","contributorId":215990,"corporation":false,"usgs":false,"family":"Lloyd","given":"N.A.","email":"","affiliations":[{"id":39343,"text":"Centre for Conservation Research, Calgary Zoological Society, Calgary, AB, Canada","active":true,"usgs":false}],"preferred":false,"id":763606,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hostetter, N.J.","contributorId":215989,"corporation":false,"usgs":false,"family":"Hostetter","given":"N.J.","affiliations":[{"id":6934,"text":"University of Washington","active":true,"usgs":false}],"preferred":false,"id":763605,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Jackson, C.L.","contributorId":215991,"corporation":false,"usgs":false,"family":"Jackson","given":"C.L.","email":"","affiliations":[{"id":39344,"text":"Marmot Recovery Foundation, Nanaimo, BC, Canada","active":true,"usgs":false}],"preferred":false,"id":763607,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Converse, Sarah J. 0000-0002-3719-5441 sconverse@usgs.gov","orcid":"https://orcid.org/0000-0002-3719-5441","contributorId":173772,"corporation":false,"usgs":true,"family":"Converse","given":"Sarah","email":"sconverse@usgs.gov","middleInitial":"J.","affiliations":[{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true},{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":763608,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Moehrenschlager, A.","contributorId":215992,"corporation":false,"usgs":false,"family":"Moehrenschlager","given":"A.","affiliations":[{"id":39343,"text":"Centre for Conservation Research, Calgary Zoological Society, Calgary, AB, Canada","active":true,"usgs":false}],"preferred":false,"id":763609,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70203075,"text":"70203075 - 2019 - Multidecadal geomorphic evolution of a profoundly disturbed gravel-bed river system—a complex, nonlinear response and its impact on sediment delivery","interactions":[],"lastModifiedDate":"2019-06-18T11:42:08","indexId":"70203075","displayToPublicDate":"2019-04-08T15:06:00","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5739,"text":"Journal of Geophysical Research: Earth Surface","onlineIssn":"2169-9011","active":true,"publicationSubtype":{"id":10}},"title":"Multidecadal geomorphic evolution of a profoundly disturbed gravel-bed river system—a complex, nonlinear response and its impact on sediment delivery","docAbstract":"A 2.5-km3 debris avalanche during the 1980 eruption of Mount St. Helens reset the fluvial landscape of upper North Fork Toutle River valley. Since then, a new drainage network has formed and evolved. Cross-section surveys repeated over nearly 40 years at 16 locations along a 20-km reach of river valley document channel evolution, geomorphic processes, and their impacts on sediment delivery. We analyzed spatial and temporal changes in channel morphology using two new metrics: 1) a shape index that defines the degree of U-shaped or V-shaped valley geometry; and 2) an alluvial phase-space diagram that relates bed degradation or aggradation between consecutive surveys to increases or decreases in cross-section area. Metric relations reveal more diverse channel evolution than originally described by a simple, linear-response model of sequential channel initiation and incision; aggradation and widening; and subsequent episodic scour and fill with little change in bed elevation. Instead, vertical and lateral adjustments have been crucial processes intertwined throughout channel evolution. Channel evolution has followed a distinctly nonlinear and non-sequential trajectory, migrating through several phase spaces and involving varied combinations of (1) degradation and aggradation with widening and narrowing, (2) bed-level fluctuations with little change in cross-section area, and (3) changes in cross-section area with little change of bed elevation. Persistent channel widening and reworking of the channel bed presently drive elevated sediment delivery from this basin. Elevated sediment delivery is likely to persist until valley-floor widths greatly exceed that of the channel-migration corridor, and/or channel banks and valley walls stabilize.","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2018JF004843","usgsCitation":"Major, J.J., Zheng, S., Mosbrucker, A.R., Spicer, K.R., Christianson, T., and Thorne, C.R., 2019, Multidecadal geomorphic evolution of a profoundly disturbed gravel-bed river system—a complex, nonlinear response and its impact on sediment delivery: Journal of Geophysical Research: Earth Surface, v. 124, no. 5, p. 1281-1309, https://doi.org/10.1029/2018JF004843.","productDescription":"29 p.","startPage":"1281","endPage":"1309","ipdsId":"IP-100648","costCenters":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"links":[{"id":467716,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2018jf004843","text":"Publisher Index Page"},{"id":437505,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9YUFZJ6","text":"USGS data release","linkHelpText":"Digital elevation models of upper North Fork Toutle River near Mount St. Helens, based on 2006-2014 airborne lidar surveys"},{"id":437504,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P96B0IEC","text":"USGS data release","linkHelpText":"Digital elevation models of Mount St. Helens crater and upper North Fork Toutle River basin, based on 1987 and 1999 airborne photogrammetry surveys"},{"id":363048,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Washington ","otherGeospatial":"North Fork Toutle River Valley","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -122.7912712097168,\n              46.30697982530866\n            ],\n            [\n              -122.68758773803711,\n              46.30697982530866\n            ],\n            [\n              -122.68758773803711,\n              46.358775940085025\n            ],\n            [\n              -122.7912712097168,\n              46.358775940085025\n            ],\n            [\n              -122.7912712097168,\n              46.30697982530866\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"124","issue":"5","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2019-05-27","publicationStatus":"PW","contributors":{"authors":[{"text":"Major, Jon J. 0000-0003-2449-4466 jjmajor@usgs.gov","orcid":"https://orcid.org/0000-0003-2449-4466","contributorId":439,"corporation":false,"usgs":true,"family":"Major","given":"Jon","email":"jjmajor@usgs.gov","middleInitial":"J.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":761057,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Zheng, Shan 0000-0003-4595-9496","orcid":"https://orcid.org/0000-0003-4595-9496","contributorId":214875,"corporation":false,"usgs":false,"family":"Zheng","given":"Shan","email":"","affiliations":[{"id":39129,"text":"Wuhan University","active":true,"usgs":false}],"preferred":false,"id":761058,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mosbrucker, Adam R. 0000-0003-0298-0324 amosbrucker@usgs.gov","orcid":"https://orcid.org/0000-0003-0298-0324","contributorId":4968,"corporation":false,"usgs":true,"family":"Mosbrucker","given":"Adam","email":"amosbrucker@usgs.gov","middleInitial":"R.","affiliations":[{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true},{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":761059,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Spicer, Kurt R. 0000-0001-5030-3198 krspicer@usgs.gov","orcid":"https://orcid.org/0000-0001-5030-3198","contributorId":2684,"corporation":false,"usgs":true,"family":"Spicer","given":"Kurt","email":"krspicer@usgs.gov","middleInitial":"R.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":761061,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Christianson, Tami 0000-0002-6873-9229","orcid":"https://orcid.org/0000-0002-6873-9229","contributorId":214877,"corporation":false,"usgs":true,"family":"Christianson","given":"Tami","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true}],"preferred":true,"id":761062,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Thorne, Colin R. 0000-0002-2450-9624","orcid":"https://orcid.org/0000-0002-2450-9624","contributorId":214876,"corporation":false,"usgs":false,"family":"Thorne","given":"Colin","email":"","middleInitial":"R.","affiliations":[{"id":39130,"text":"University of Nottingham","active":true,"usgs":false}],"preferred":false,"id":761060,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70203086,"text":"70203086 - 2019 - Skin and fin diseases","interactions":[],"lastModifiedDate":"2019-06-25T15:01:20","indexId":"70203086","displayToPublicDate":"2019-04-08T15:00:51","publicationYear":"2019","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"5","title":"Skin and fin diseases","docAbstract":"Fish are critically important to the welfare of this planet and its occupants, the health of both wild and captive fish populations paramount to our survival. This book presents the gross pathology of the most commonly encountered diseases and syndromes of fish in an organ system-based approach. It provides an overview of the diseases and disorders of tropical, ornamental, bait and food fish from freshwater, brackish and marine environments. Readers will gain a broader understanding of the basic biology of infectious and non-infectious diseases in fish, as well as novel diagnostic techniques and innovative disease control methods.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Fish Diseases and Medicine","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"CRC Press","isbn":"978-1-4987-2786-0","usgsCitation":"Smith, P., Elliott, D., Bruno, D.W., and Smith, S.A., 2019, Skin and fin diseases, chap. 5 <i>of</i> Fish Diseases and Medicine, p. 97-114.","productDescription":"18 p.","startPage":"97","endPage":"114","ipdsId":"IP-100742","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":365034,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Smith, Pedro","contributorId":214898,"corporation":false,"usgs":false,"family":"Smith","given":"Pedro","email":"","affiliations":[{"id":39132,"text":"Veterinary Sciences, University of Chile","active":true,"usgs":false}],"preferred":false,"id":761102,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Elliott, Diane 0000-0002-4809-6692 dgelliott@usgs.gov","orcid":"https://orcid.org/0000-0002-4809-6692","contributorId":214897,"corporation":false,"usgs":true,"family":"Elliott","given":"Diane","email":"dgelliott@usgs.gov","affiliations":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"preferred":true,"id":761101,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bruno, David W","contributorId":214900,"corporation":false,"usgs":false,"family":"Bruno","given":"David","email":"","middleInitial":"W","affiliations":[],"preferred":false,"id":761104,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Smith, Stephen A","contributorId":214899,"corporation":false,"usgs":false,"family":"Smith","given":"Stephen","email":"","middleInitial":"A","affiliations":[{"id":39133,"text":"Department of Biomedical Sciences and Pathology, Virginia-Maryland Regional College of Veterinary Medicine, Virginia Polytechnic Institute and State University","active":true,"usgs":false}],"preferred":false,"id":761103,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70203423,"text":"70203423 - 2019 - Iron and sulfide nanoparticle formation and transport in nascent hydrothermal vent plumes","interactions":[],"lastModifiedDate":"2019-07-23T13:53:32","indexId":"70203423","displayToPublicDate":"2019-04-08T12:32:06","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2842,"text":"Nature Communications","active":true,"publicationSubtype":{"id":10}},"title":"Iron and sulfide nanoparticle formation and transport in nascent hydrothermal vent plumes","docAbstract":"Deep-sea hydrothermal vents are a significant source of dissolved metals to the global oceans, producing midwater plumes enriched in metals that are transported thousands of kilometers from the vent source. Extensive particle precipitation upon emission of hydrothermal fluids, due to temperature and pH changes during mixing with ambient seawater, controls metal speciation and the magnitude of metal export. Here, we document the formation and spatial distribution of metal sulfide particles, including pyrite (nano)particles, within the first meter of buoyant plumes from three high-temperature hydrothermal vents at the East Pacific Rise (9°50’ N). We observe a zone of particle settling 10 – 20 cm from the orifice, indicated by the stable sulfur isotope distribution of sulphide in the plume; however, we also demonstrate that nanoparticulate pyrite (FeS2) is not removed from the plume and can account for over half of the filtered Fe (≤ 0.2 µm) up to one meter from the vent orifice. The persistence of nanoparticulate pyritic Fe beyond the first meter demonstrates that it is an important mechanism for near-vent Fe stabilisation that may further allow transport of Fe to midwater plumes, and highlights the potential role of nanoparticles in element transport.","language":"English","publisher":"Nature","doi":"10.1038/s41467-019-09580-5","usgsCitation":"Findlay, A.J., Estes, E., Gartman, A., Kamyshny, A., Yucel, M., and Luther, G.W., 2019, Iron and sulfide nanoparticle formation and transport in nascent hydrothermal vent plumes: Nature Communications, v. 10, Article 1597, 7 p., https://doi.org/10.1038/s41467-019-09580-5.","productDescription":"Article 1597, 7 p.","ipdsId":"IP-104755","costCenters":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":467717,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1038/s41467-019-09580-5","text":"Publisher Index Page"},{"id":363775,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"10","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Findlay, Alyssa J.","contributorId":215547,"corporation":false,"usgs":false,"family":"Findlay","given":"Alyssa","email":"","middleInitial":"J.","affiliations":[{"id":37318,"text":"Aarhus University","active":true,"usgs":false}],"preferred":false,"id":762640,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Estes, Emily","contributorId":215548,"corporation":false,"usgs":false,"family":"Estes","given":"Emily","email":"","affiliations":[{"id":13359,"text":"University of Delaware","active":true,"usgs":false}],"preferred":false,"id":762641,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Gartman, Amy 0000-0001-9307-3062 agartman@usgs.gov","orcid":"https://orcid.org/0000-0001-9307-3062","contributorId":215546,"corporation":false,"usgs":true,"family":"Gartman","given":"Amy","email":"agartman@usgs.gov","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true}],"preferred":true,"id":762639,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kamyshny, Alexey","contributorId":215549,"corporation":false,"usgs":false,"family":"Kamyshny","given":"Alexey","email":"","affiliations":[{"id":39275,"text":"Ben-Gurion University","active":true,"usgs":false}],"preferred":false,"id":762642,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Yucel, Mustafa","contributorId":215550,"corporation":false,"usgs":false,"family":"Yucel","given":"Mustafa","email":"","affiliations":[{"id":39276,"text":"Middle-East Technical University","active":true,"usgs":false}],"preferred":false,"id":762643,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Luther, George W.","contributorId":215551,"corporation":false,"usgs":false,"family":"Luther","given":"George","email":"","middleInitial":"W.","affiliations":[{"id":13359,"text":"University of Delaware","active":true,"usgs":false}],"preferred":false,"id":762644,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70203820,"text":"70203820 - 2019 - Bisphenol A and 17 alpha-ethinylestradiol-induced transgenerational differences in expression of osmoregulatory genes in the gill of medaka (Oryzias latipes)","interactions":[],"lastModifiedDate":"2019-06-14T11:42:08","indexId":"70203820","displayToPublicDate":"2019-04-08T11:35:46","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":874,"text":"Aquatic Toxicology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Bisphenol A and 17α-ethinylestradiol-induced transgenerational differences in expression of osmoregulatory genes in the gill of medaka (<i>Oryzias latipes</i>)","title":"Bisphenol A and 17 alpha-ethinylestradiol-induced transgenerational differences in expression of osmoregulatory genes in the gill of medaka (Oryzias latipes)","docAbstract":"<p><span>Embryonic bisphenol A (BPA) and 17α-ethinylestradiol (EE2) exposure can have far reaching health effects in fish, including adult onset transgenerational reproductive abnormalities, anxiety, and cardiac disorders. It is unknown whether these two environmental estrogens can induce transgenerational abnormalities in the gill. The present study examined transgenerational effects of BPA or EE2 exposure on genes that are critical for osmoregulation in fish. Medaka (</span><i>Oryzias latipes</i><span>) embryos were exposed to either BPA (100 μg/L) or EE2 (0.05 μg/L) for the first 7 days of embryonic development and never thereafter for the remainder of that generation (F0) and in subsequent generations of this study (F1, F2, and F3). Expression of osmoregulatory genes (</span><i>NKAα1a</i><span>,&nbsp;</span><i>NKAα1b</i><span>,&nbsp;</span><i>NKAα1c</i><span>,&nbsp;</span><i>NKAα3a</i><span>,&nbsp;</span><i>NKAα3b</i><span>,&nbsp;</span><i>NKCC1a,</i><span>&nbsp;and&nbsp;</span><i>CFTR</i><span>) were examined in gills of the first-generation (F0) adults which were directly exposed as embryo and in the fourth-generation adults (F3), which were never exposed to either of these environmental estrogens. Significant alterations in expression of osmoregulatory genes were observed in both F0 and F3 generations. Within the F0 generation, a sex-specific expression pattern was observed with a downregulation of osmoregulatory genes in males and an upregulation of osmoregulatory genes in females. At the F3 generation, this pattern reversed with the majority of the osmoregulatory genes upregulated in males and downregulated in females, suggesting that exposure to BPA and EE2 during embryonic development induced transgenerational impairment in molecular events associated with osmoregulatory functions in subsequent generations. These adverse outcomes may have impacts on physiological functions related to osmoregulation of fish inhabiting contaminated aquatic environments.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.aquatox.2019.04.005","usgsCitation":"Wang, X., Hill, D., Tillitt, D.E., and Bhandari, R., 2019, Bisphenol A and 17 alpha-ethinylestradiol-induced transgenerational differences in expression of osmoregulatory genes in the gill of medaka (Oryzias latipes): Aquatic Toxicology, v. 211, p. 227-234, https://doi.org/10.1016/j.aquatox.2019.04.005.","productDescription":"8 p.","startPage":"227","endPage":"234","ipdsId":"IP-107088","costCenters":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"links":[{"id":467718,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6626660","text":"Publisher Index Page"},{"id":364699,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"211","publishingServiceCenter":{"id":4,"text":"Rolla PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Wang, Xuegeng","contributorId":216233,"corporation":false,"usgs":false,"family":"Wang","given":"Xuegeng","email":"","affiliations":[{"id":39379,"text":"University of North Carolina at Greensboro, Greensboro, NC","active":true,"usgs":false}],"preferred":false,"id":764267,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hill, Diamond","contributorId":216234,"corporation":false,"usgs":false,"family":"Hill","given":"Diamond","email":"","affiliations":[{"id":39379,"text":"University of North Carolina at Greensboro, Greensboro, NC","active":true,"usgs":false}],"preferred":false,"id":764268,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Tillitt, Donald E. 0000-0002-8278-3955 dtillitt@usgs.gov","orcid":"https://orcid.org/0000-0002-8278-3955","contributorId":1875,"corporation":false,"usgs":true,"family":"Tillitt","given":"Donald","email":"dtillitt@usgs.gov","middleInitial":"E.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":764266,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Bhandari, Ramji K.","contributorId":215751,"corporation":false,"usgs":false,"family":"Bhandari","given":"Ramji K.","affiliations":[{"id":39315,"text":"Department of Biology, University of North Carolina Greensboro, Greensboro, NC","active":true,"usgs":false}],"preferred":false,"id":764269,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70202903,"text":"sir20195008 - 2019 - Sediment storage and transport in the Nooksack River basin, northwestern Washington, 2006–15","interactions":[],"lastModifiedDate":"2019-05-02T09:56:15","indexId":"sir20195008","displayToPublicDate":"2019-04-08T11:07:35","publicationYear":"2019","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2019-5008","displayTitle":"Sediment Storage and Transport in the Nooksack River Basin, Northwestern Washington, 2006–15","title":"Sediment storage and transport in the Nooksack River basin, northwestern Washington, 2006–15","docAbstract":"<p class=\"p1\">The Nooksack River is a dynamic gravel-bedded river in northwestern Washington, draining off Mount Baker and the North Cascades into Puget Sound. Working in cooperation with the Whatcom County Flood Control Zone District, the U.S. Geological Survey studied topographic, hydrologic, and climatic data for the Nooksack River basin to document recent changes in sediment storage, long-term bed elevation trends, rates of sediment transport, and factors influencing surficial drainage in order to support ongoing river management. Differences in elevations between topographic and bathymetric surveys in 2005/06 and 2013/15 indicate the active channel aggraded about 1–2 feet locally near the cities of Ferndale and Everson but was primarily stable between them. The active channel upstream of Nugent’s Corner generally incised. Total incision upstream of Nugent’s Corner to Glacier Creek generated 2.3 ± 1.7 million cubic yards of sediment from 2005/06 to 2013 and likely represented a significant source of coarse sediment to the lower mainstem river over that time.</p><p class=\"p1\">Long-term records of local channel-bed elevation, derived from U.S. Geological Survey streamgage data, show bed-elevation changes of about 1–3 feet. The river bed at most streamgages exhibits long-term trends, with relatively consistent rates of change on the order of 1 foot per decade that persist years to decades. Lagged correlations in bed-elevation trends at all seven streamgages in the North Fork Nooksack and mainstem Nooksack suggest that decadal periods of persistent aggradation and incision originate in the North Fork and translate downstream. The channel-change signal propagates downstream 0.5–2.5 miles per year, with the rate of propagation scaling closely with channel slope. The pattern of incision and aggradation in the North Fork correlates with regional climate, where persistent incision follows extended cold and wet periods, and persistent aggradation follows extended warm and dry periods. Climate-driven variation in coarse-sediment delivery, primarily from the North Fork Nooksack, then appears to be a strong control on long-term vertical channel adjustments at sites downstream. The downstream-translating climate signal generated in the North Fork would account for recently observed aggradation at Everson and Ferndale but not the observed incision in unconfined reaches upstream of Nugent’s Corner from 2005–06 to 2013. This mismatch indicates that understanding how changes in sediment-supply influence those unconfined reaches remains a key uncertainty for predicting future channel change.</p><p class=\"p2\">Continuous turbidity monitoring integrated with suspended sediment and limited bedload sampling were used to calculate annual sediment loads at five sites in the basin. The sediment load in the lower river at Ferndale ranged from 0.78 to 1.17 million tons per year and averaged 0.97 million tons per year for WYs 2012–17. Suspended sediment made up 93 percent of the load, and bedload made up 7 percent. Most of the fine sediment load of the lower river is supplied from headwaters of the North, Middle, and South Fork Nooksack basins, with relatively little net increase in fine sediment loads in the lower mainstem basin. The three forks supply approximately equal proportions of the lower-river fine sediment load. However, the glacially sourced North and Middle Fork Nooksack basins carry a notably sandier suspended-sediment load than the South Fork Nooksack.</p><p class=\"p2\">A comparison of monthly streamflow and precipitation trends since 1981 indicate statistically significant increases in total spring precipitation and the number of spring days with measurable precipitation in much of the basin, as well as increases in mean spring river stage near Ferndale. Since no trends in mean spring discharge are observed, the trends in river stage are attributed primarily to observed changes in bed elevation. Changes in bed elevation and precipitation may then both have plausibly impacted field drainage in the lower river below Ferndale.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20195008","collaboration":"Prepared in cooperation with the Whatcom County Flood Control Zone District","usgsCitation":"Anderson, S.W., Konrad, C.P., Grossman, E.E., and Curran, C.A., 2019, Sediment storage and transport in the Nooksack River basin, northwestern Washington, 2006–15: U.S. Geological Survey Scientific Investigations Report 2019-5008, 43 p., https://doi.org/10.3133/sir20195008.","productDescription":"vii, 43 p.","onlineOnly":"Y","ipdsId":"IP-097289","costCenters":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"links":[{"id":362810,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2019/5008/sir20195008.pdf","text":"Report","size":"42.8 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2019-5008"},{"id":362809,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2019/5008/coverthb2.jpg"}],"country":"United States","state":"Washington","otherGeospatial":"Nooksack River Basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -122.64312744140624,\n              48.499317631540286\n            ],\n            [\n              -121.453857421875,\n              48.499317631540286\n            ],\n            [\n              -121.453857421875,\n              48.9991410647952\n            ],\n            [\n              -122.64312744140624,\n              48.9991410647952\n            ],\n            [\n              -122.64312744140624,\n              48.499317631540286\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_wa@usgs.gov\" data-mce-href=\"mailto:dc_wa@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/wa-water\" target=\"_blank\" rel=\"noopener\" data-mce-href=\"https://www.usgs.gov/centers/wa-water\">Washington Water Science Center</a><br>U.S. Geological Survey<br>934 Broadway, Suite 300<br>Tacoma, Washington 98402</p>","tableOfContents":"<ul><li>Abstract</li><li>Introduction</li><li>Background</li><li>Channel Change Since 2006 Based On Repeat Surveys</li><li>Long-Term Trends in River Bed Elevation at U.S. Geological Survey Streamgages</li><li>Fluvial Sediment Loads</li><li>Floodplain Drainage and Recent Trends in Precipitation, Streamflow, and Stage</li><li>Dynamics of Water-Surface Elevations, River Bed Elevations, and Suspended-Sediment</li><li>Transport in the Lower Mainstem Nooksack River</li><li>Future Monitoring</li><li>Conclusions</li><li>Acknowledgments</li><li>References Cited</li></ul>","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"publishedDate":"2019-04-08","noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Anderson, Scott W. 0000-0003-1678-5204 swanderson@usgs.gov","orcid":"https://orcid.org/0000-0003-1678-5204","contributorId":196687,"corporation":false,"usgs":true,"family":"Anderson","given":"Scott","email":"swanderson@usgs.gov","middleInitial":"W.","affiliations":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"preferred":true,"id":760422,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Konrad, Christopher P. 0000-0002-7354-547X cpkonrad@usgs.gov","orcid":"https://orcid.org/0000-0002-7354-547X","contributorId":1716,"corporation":false,"usgs":true,"family":"Konrad","given":"Christopher","email":"cpkonrad@usgs.gov","middleInitial":"P.","affiliations":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"preferred":true,"id":760423,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Grossman, Eric E. 0000-0003-0269-6307 egrossman@usgs.gov","orcid":"https://orcid.org/0000-0003-0269-6307","contributorId":140908,"corporation":false,"usgs":true,"family":"Grossman","given":"Eric E.","email":"egrossman@usgs.gov","affiliations":[{"id":520,"text":"Pacific Coastal and Marine Science Center","active":true,"usgs":true},{"id":186,"text":"Coastal and Marine Geology Program","active":true,"usgs":true}],"preferred":false,"id":760424,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Curran, Christopher A. 0000-0001-8933-416X ccurran@usgs.gov","orcid":"https://orcid.org/0000-0001-8933-416X","contributorId":1650,"corporation":false,"usgs":true,"family":"Curran","given":"Christopher","email":"ccurran@usgs.gov","middleInitial":"A.","affiliations":[{"id":622,"text":"Washington Water Science Center","active":true,"usgs":true}],"preferred":true,"id":760425,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70203390,"text":"70203390 - 2019 - Changes in genetic diversity and differentiation in Red‐cockaded woodpeckers (Dryobates borealis) over the past century","interactions":[],"lastModifiedDate":"2019-05-13T12:13:58","indexId":"70203390","displayToPublicDate":"2019-04-08T09:59:59","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Changes in genetic diversity and differentiation in Red‐cockaded woodpeckers (<i>Dryobates borealis </i>) over the past century","title":"Changes in genetic diversity and differentiation in Red‐cockaded woodpeckers (Dryobates borealis) over the past century","docAbstract":"<p>Red‐cockaded woodpeckers (RCW; <i>Dryobates borealis</i>) declined after human activities reduced their fire‐maintained pine ecosystem to &lt;3% of its historical range in the southeastern United States and degraded remaining habitat. An estimated 1.6 million RCW cooperative breeding groups declined to about 3,500 groups with no more than 10,000 birds by 1978. Management has increased RCW population abundances since they were at their lowest in the 1990s. However, no range‐wide study has been undertaken since then to investigate the impacts of this massive bottleneck or infer the effects of conservation management and recent demographic recoveries. We used mitochondrial DNA sequences (mtDNA) and nine nuclear microsatellite loci to determine if range‐wide demographic declines resulted in changes to genetic structure and diversity in RCW by comparing samples collected before 1970 (mtDNA data only), between 1992 and 1995 (mtDNA and microsatellites), and between 2010 and 2014 (mtDNA and microsatellites). We show that genetic diversity has been lost as detected by a reduction in the number of mitochondrial haplotypes. This reduction was apparent in comparisons of pre‐1970 mtDNA data with data from the 1992–1995 and 2010–2014 time points, with no change between the latter two time points in mtDNA and microsatellite analyses. The mtDNA data also revealed increases in range‐wide genetic differentiation, with a genetically panmictic population present throughout the southeastern United States in the pre‐1970s data and subsequent development of genetic structure that has remained unchanged since the 1990s. Genetic structure was also uncovered with the microsatellite data, which like the mtDNA data showed little change between the 1992–1995 and 2010–2014 data sets. Temporal haplotype networks revealed a consistent, star‐like phylogeny, suggesting that despite the overall loss of haplotypes, no phylogenetically distinct mtDNA lineages were lost when the population declined. Our results may suggest that management during the last two decades has prevented additional losses of genetic diversity.</p>","language":"English","publisher":"Wiley","doi":"10.1002/ece3.5135","usgsCitation":"Miller, M.P., Vilstrup, J.T., Mullins, T.D., McDearmon, W., Walters, J.R., and Haig, S.M., 2019, Changes in genetic diversity and differentiation in Red‐cockaded woodpeckers (Dryobates borealis) over the past century: Ecology and Evolution, v. 9, no. 9, p. 5420-5432, https://doi.org/10.1002/ece3.5135.","productDescription":"13 p.","startPage":"5420","endPage":"5432","ipdsId":"IP-101678","costCenters":[{"id":251,"text":"Ecosystems Mission Area","active":false,"usgs":true},{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"links":[{"id":460411,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.5135","text":"Publisher Index Page"},{"id":363718,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Alabama, Arkansas, Florida, Georgia, Kentucky, Louisiana, Mississippi, North Carolina, South Carolina, Tennessee, Texas, Virginia","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -97.03125,\n              24.926294766395593\n            ],\n            [\n              -77.87109375,\n              24.926294766395593\n            ],\n            [\n              -77.87109375,\n              35.02999636902566\n            ],\n            [\n              -82.529296875,\n              37.16031654673677\n            ],\n            [\n              -87.01171875,\n              37.09023980307208\n            ],\n            [\n              -97.03125,\n              35.02999636902566\n            ],\n            [\n              -97.03125,\n              24.926294766395593\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"9","issue":"9","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Miller, Mark P. 0000-0003-1045-1772 mpmiller@usgs.gov","orcid":"https://orcid.org/0000-0003-1045-1772","contributorId":1967,"corporation":false,"usgs":true,"family":"Miller","given":"Mark","email":"mpmiller@usgs.gov","middleInitial":"P.","affiliations":[{"id":38131,"text":"WMA - Office of Planning and Programming","active":true,"usgs":true}],"preferred":true,"id":762490,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Vilstrup, Julia T.","contributorId":202694,"corporation":false,"usgs":false,"family":"Vilstrup","given":"Julia","email":"","middleInitial":"T.","affiliations":[{"id":6680,"text":"Oregon State University","active":true,"usgs":false}],"preferred":false,"id":762491,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Mullins, Thomas D. 0000-0001-8948-9604 tom_mullins@usgs.gov","orcid":"https://orcid.org/0000-0001-8948-9604","contributorId":149824,"corporation":false,"usgs":true,"family":"Mullins","given":"Thomas","email":"tom_mullins@usgs.gov","middleInitial":"D.","affiliations":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true},{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":true,"id":762492,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"McDearmon, Will","contributorId":211056,"corporation":false,"usgs":false,"family":"McDearmon","given":"Will","email":"","affiliations":[{"id":36188,"text":"U.S. Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":762493,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Walters, Jeffrey R.","contributorId":202696,"corporation":false,"usgs":false,"family":"Walters","given":"Jeffrey","email":"","middleInitial":"R.","affiliations":[{"id":12694,"text":"Virginia Tech","active":true,"usgs":false}],"preferred":false,"id":762494,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Haig, Susan M. 0000-0002-6616-7589 susan_haig@usgs.gov","orcid":"https://orcid.org/0000-0002-6616-7589","contributorId":719,"corporation":false,"usgs":true,"family":"Haig","given":"Susan","email":"susan_haig@usgs.gov","middleInitial":"M.","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true},{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"preferred":true,"id":762495,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70202865,"text":"70202865 - 2019 - Implications of climate scenarios for Badlands National Park resource management","interactions":[],"lastModifiedDate":"2019-04-10T09:56:08","indexId":"70202865","displayToPublicDate":"2019-04-08T09:55:33","publicationYear":"2019","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":4,"text":"Other Government Series"},"title":"Implications of climate scenarios for Badlands National Park resource management","docAbstract":"Badlands National Park (BADL) hosts a myriad of natural and cultural resources, including bison and black-footed ferrets, the mixed grass prairie they live in, 37-75 million-year-old fossils, and historic buildings, trails, and roads. All are sensitive to climate, but anticipating precisely how each will be affected by climate change is difficult. In the face of this challenge, park resource managers must nevertheless make forward-looking decisions and take action to meet resource management goals. Fortunately, tools exist to identify strategies and actions likely to succeed under a range of potential future climate conditions. Two such tools—qualitative scenario planning and quantitative ecological simulation modeling—were used to anticipate management challenges and identify solutions for BADL and adjacent federal and tribal lands in the coming decades (through 2050). This brief summarizes and synthesizes results of this work. Although the brief focuses on BADL, it also includes several key insights gained from examining management approaches on adjacent lands.","language":"English","collaboration":"National Park Service","usgsCitation":"Miller, B.W., Symstad, A., and Schuurman, G., 2019, Implications of climate scenarios for Badlands National Park resource management, 5 p.","productDescription":"5 p.","ipdsId":"IP-102442","costCenters":[{"id":477,"text":"North Central Climate Science Center","active":true,"usgs":true}],"links":[{"id":362878,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":362636,"type":{"id":15,"text":"Index Page"},"url":"https://www.nps.gov/subjects/climatechange/upload/2019-03-26BADLClimateScenariosBrief_508Compliant.pdf"}],"country":"United States","state":"South Dakota","otherGeospatial":"Badlands National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -102.48321533203125,\n              43.450925007583706\n            ],\n            [\n              -102.22915649414061,\n              43.450925007583706\n            ],\n            [\n              -102.22915649414061,\n              43.6102281417864\n            ],\n            [\n              -102.48321533203125,\n              43.6102281417864\n            ],\n            [\n              -102.48321533203125,\n              43.450925007583706\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Miller, Brian W. 0000-0003-1716-1161 bwmiller@usgs.gov","orcid":"https://orcid.org/0000-0003-1716-1161","contributorId":191731,"corporation":false,"usgs":true,"family":"Miller","given":"Brian","email":"bwmiller@usgs.gov","middleInitial":"W.","affiliations":[{"id":477,"text":"North Central Climate Science Center","active":true,"usgs":true}],"preferred":false,"id":760336,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Symstad, Amy 0000-0003-4231-2873 asymstad@usgs.gov","orcid":"https://orcid.org/0000-0003-4231-2873","contributorId":201095,"corporation":false,"usgs":true,"family":"Symstad","given":"Amy","email":"asymstad@usgs.gov","affiliations":[{"id":480,"text":"Northern Prairie Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":760337,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schuurman, Gregor","contributorId":174509,"corporation":false,"usgs":true,"family":"Schuurman","given":"Gregor","affiliations":[{"id":27461,"text":"NPS, Fort Collins, CO","active":true,"usgs":false}],"preferred":false,"id":760338,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70202875,"text":"70202875 - 2019 - The Value of Data – The Qatar Geologic Mapping Project","interactions":[],"lastModifiedDate":"2019-04-10T09:45:44","indexId":"70202875","displayToPublicDate":"2019-04-08T09:44:20","publicationYear":"2019","noYear":false,"publicationType":{"id":24,"text":"Conference Paper"},"publicationSubtype":{"id":19,"text":"Conference Paper"},"title":"The Value of Data – The Qatar Geologic Mapping Project","docAbstract":"The State of Qatar is in a period of rapid development, modernization, and population growth. One of the most important factors influencing the long-term success and sustainability of future development is a comprehensive understanding of the region’s geologic regime, geotechnical conditions, natural resources, and environmental constraints.  To obtain this understanding, the Ministry of Municipality and Environment (MME) of the State of Qatar has undertaken the Qatar Geological Mapping Project (QGMP). The project was envisioned with the strategic foresight to compile and utilize existing and legacy subsurface data collected as part of its massive infrastructure and development projects as the foundation for developing modern scientific resources including geologic maps, digital thematic maps, and a 3-dimensional geological model of the Doha metropolitan area. Recently, the MME, in consultation with Gannett Fleming, Inc. (GF) and the United States Geological Survey (USGS) concluded the data collection and analysis phase (Phase I) of the two-phase QGMP. Phase I included: the development of a comprehensive geotechnical relational database populated with data digitized from more than 13,000 subsurface data logs; a detailed data quality analysis and distribution assessment; an extensive gap analysis and needs assessment; and careful design of the geologic mapping and subsurface investigation programs for the next phase of the project.","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Geotechnical Special Publication","largerWorkSubtype":{"id":12,"text":"Conference publication"},"conferenceTitle":"Eighth International Conference on Case Histories in Geotechnical Engineering","conferenceDate":"March 24-27, 2019","conferenceLocation":"Philadelphia, Pennsylvania","language":"English","publisher":"American Society of Civil Engineers","doi":"10.1061/9780784482162.002","usgsCitation":"Krupansky, J.T., Knight, M.A., Orndorff, R., Al-Akhras, K.M., Mouradian, A.G., and Saleh, A.F., 2019, The Value of Data – The Qatar Geologic Mapping Project, <i>in</i> Geotechnical Special Publication, v. 314, Philadelphia, Pennsylvania, March 24-27, 2019, p. 12-23, https://doi.org/10.1061/9780784482162.002.","productDescription":"12 p.","startPage":"12","endPage":"23","ipdsId":"IP-101378","costCenters":[{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true}],"links":[{"id":362877,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Qatar","volume":"314","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2019-03-21","publicationStatus":"PW","contributors":{"authors":[{"text":"Krupansky, Joseph T.","contributorId":214600,"corporation":false,"usgs":false,"family":"Krupansky","given":"Joseph","email":"","middleInitial":"T.","affiliations":[{"id":39084,"text":"Gannett Fleming, Inc","active":true,"usgs":false}],"preferred":false,"id":760354,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Knight, Michael A.","contributorId":214601,"corporation":false,"usgs":false,"family":"Knight","given":"Michael","email":"","middleInitial":"A.","affiliations":[{"id":39084,"text":"Gannett Fleming, Inc","active":true,"usgs":false}],"preferred":false,"id":760355,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Orndorff, Randall 0000-0002-8956-5803","orcid":"https://orcid.org/0000-0002-8956-5803","contributorId":214599,"corporation":false,"usgs":true,"family":"Orndorff","given":"Randall","affiliations":[{"id":243,"text":"Eastern Geology and Paleoclimate Science Center","active":true,"usgs":true}],"preferred":false,"id":760353,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Al-Akhras, Khaled M.","contributorId":214602,"corporation":false,"usgs":false,"family":"Al-Akhras","given":"Khaled","email":"","middleInitial":"M.","affiliations":[{"id":39085,"text":"Qatar Ministry of Municipality and Environment","active":true,"usgs":false}],"preferred":false,"id":760356,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Mouradian, Ara G.","contributorId":214603,"corporation":false,"usgs":false,"family":"Mouradian","given":"Ara","email":"","middleInitial":"G.","affiliations":[{"id":39084,"text":"Gannett Fleming, Inc","active":true,"usgs":false}],"preferred":false,"id":760357,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Saleh, Ali F.","contributorId":214604,"corporation":false,"usgs":false,"family":"Saleh","given":"Ali","email":"","middleInitial":"F.","affiliations":[{"id":39085,"text":"Qatar Ministry of Municipality and Environment","active":true,"usgs":false}],"preferred":false,"id":760358,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70203050,"text":"70203050 - 2019 - Quantifying hydrologic alteration in an area lacking current reference conditions—The Mississippi Alluvial Plain of the South-Central U.S.","interactions":[],"lastModifiedDate":"2019-07-23T13:34:52","indexId":"70203050","displayToPublicDate":"2019-04-08T09:05:23","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3301,"text":"River Research and Applications","active":true,"publicationSubtype":{"id":10}},"title":"Quantifying hydrologic alteration in an area lacking current reference conditions—The Mississippi Alluvial Plain of the South-Central U.S.","docAbstract":"To better understand the effects of hydrologic alteration as they relate to human and biological needs within the Mississippi Alluvial Plain of the south-central United States, the quantification of hydrologic alteration is required. Quantifying hydrologic alteration in the Mississippi Alluvial Plain is particularly difficult because of the lack of current reference, or even relatively undisturbed, U.S. Geological Survey (USGS) streamflow-gaging stations. Water withdrawals for agriculture in the form of weirs, dams, channelization and other forms of regulation within the Mississippi Alluvial Plain increased substantially beginning around 1960 suggesting that streamflow is substantially altered after this time period. To overcome the lack of stations that exist in the present that are unaffected by anthropogenic activities (or current reference stations), historical streamflow data were used to estimate what streamflow would be in the present without anthropogenic influence (or current reference conditions). These data, when combined with current streamflow information collected by the USGS in south and eastern Arkansas, southwest corner Kentucky, Louisiana, western Mississippi, southeastern corner Missouri, extreme western Tennessee, and extreme southeastern Texas were used to assess the level of hydrologic alteration within the study area.","language":"English","publisher":"Wiley","doi":"10.1002/rra.3427","usgsCitation":"Hart, R.M., and Brian Breaker, 2019, Quantifying hydrologic alteration in an area lacking current reference conditions—The Mississippi Alluvial Plain of the South-Central U.S.: River Research and Applications, v. 35, no. 6, p. 553-565, https://doi.org/10.1002/rra.3427.","productDescription":"13 p.","startPage":"553","endPage":"565","ipdsId":"IP-094894","costCenters":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true}],"links":[{"id":467720,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/rra.3427","text":"Publisher Index Page"},{"id":437506,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9PXSBVW","text":"USGS data release","linkHelpText":"Basin characteristics, climate data, and R-scripts to determine hydrologic alteration in the Mississippi Alluvial Plain"},{"id":362976,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arkansas, Kentucky, Louisiana, Mississippi, Missouri, Texas","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -95.3173828125,\n              29.075375179558346\n            ],\n            [\n              -87.5830078125,\n              29.075375179558346\n            ],\n            [\n              -87.5830078125,\n              37.38761749978395\n            ],\n            [\n              -95.3173828125,\n              37.38761749978395\n            ],\n            [\n              -95.3173828125,\n              29.075375179558346\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"35","issue":"6","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Hart, Rheannon M. 0000-0003-4657-5945 rmhart@usgs.gov","orcid":"https://orcid.org/0000-0003-4657-5945","contributorId":5516,"corporation":false,"usgs":true,"family":"Hart","given":"Rheannon","email":"rmhart@usgs.gov","middleInitial":"M.","affiliations":[{"id":24708,"text":"Lower Mississippi-Gulf Water Science Center","active":true,"usgs":true},{"id":129,"text":"Arkansas Water Science Center","active":true,"usgs":true}],"preferred":true,"id":760945,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Brian Breaker","contributorId":214843,"corporation":false,"usgs":false,"family":"Brian Breaker","affiliations":[{"id":12537,"text":"USACE","active":true,"usgs":false}],"preferred":false,"id":760946,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70205572,"text":"70205572 - 2019 - A multi-scale soil moisture monitoring strategy for California: Design and validation","interactions":[],"lastModifiedDate":"2019-09-27T09:46:50","indexId":"70205572","displayToPublicDate":"2019-04-08T08:26:31","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2529,"text":"Journal of the American Water Resources Association","active":true,"publicationSubtype":{"id":10}},"title":"A multi-scale soil moisture monitoring strategy for California: Design and validation","docAbstract":"A multi‐scale soil moisture monitoring strategy for California was designed to inform water resource management. The proposed workflow classifies soil moisture response units (SMRUs) using publicly available datasets that represent soil, vegetation, climate, and hydrology variables, which control soil water storage. The SMRUs were classified, using principal component analysis and unsupervised K‐means clustering within a geographic information system, and validated, using summary statistics derived from measured soil moisture time series. Validation stations, located in the Sierra Nevada, include transect of sites that cross the rain‐to‐snow transition and a cluster of sites located at similar elevations in a snow‐dominated watershed. The SMRUs capture unique responses to varying climate conditions characterized by statistical measures of central tendency, dispersion, and extremes. A topographic position index and landform classification is the final step in the workflow to guide the optimal placement of soil moisture sensors at the local‐scale. The proposed workflow is highly flexible and can be implemented over a range of spatial scales and input datasets can be customized. Our approach captures a range of soil moisture responses to climate across California and can be used to design and optimize soil moisture monitoring strategies to support runoff forecasts for water supply management or to assess landscape conditions for forest and rangeland management.","language":"English","publisher":"American Water Resources Association","doi":"10.1111/1752-1688.12744","usgsCitation":"Curtis, J., Flint, L.E., and Stern, M.A., 2019, A multi-scale soil moisture monitoring strategy for California: Design and validation: Journal of the American Water Resources Association, v. 55, no. 3, p. 740-758, https://doi.org/10.1111/1752-1688.12744.","productDescription":"19 p.","startPage":"740","endPage":"758","ipdsId":"IP-084366","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":467721,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/1752-1688.12744","text":"Publisher 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 \"}}]}","volume":"55","issue":"3","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Curtis, Jennifer","contributorId":219225,"corporation":false,"usgs":true,"family":"Curtis","given":"Jennifer","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":771699,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Flint, Lorraine E. 0000-0002-7868-441X lflint@usgs.gov","orcid":"https://orcid.org/0000-0002-7868-441X","contributorId":1184,"corporation":false,"usgs":true,"family":"Flint","given":"Lorraine","email":"lflint@usgs.gov","middleInitial":"E.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":771700,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stern, Michelle A. 0000-0003-3030-7065 mstern@usgs.gov","orcid":"https://orcid.org/0000-0003-3030-7065","contributorId":4244,"corporation":false,"usgs":true,"family":"Stern","given":"Michelle","email":"mstern@usgs.gov","middleInitial":"A.","affiliations":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"preferred":true,"id":771701,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70205861,"text":"70205861 - 2019 - Changes in behavior are unable to disrupt a trophic cascade involving a specialist herbivore and its food plant","interactions":[],"lastModifiedDate":"2019-10-09T08:06:44","indexId":"70205861","displayToPublicDate":"2019-04-08T08:06:03","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"title":"Changes in behavior are unable to disrupt a trophic cascade involving a specialist herbivore and its food plant","docAbstract":"Changes in ecological conditions can induce changes in behavior and demography of wild organisms, which in turn may influence population dynamics. Pacific black brant (Branta bernicla nigricans) nesting in colonies on the Yukon-Kuskokwim Delta (YKD) in western Alaska have declined substantially (~50%) since the turn of the century. Pacific black brant are herbivores that rely heavily on Carex subspathacea (Hoppner’s sedge) during growth and development. The availability of C. subspathacea affects gosling growth rates, which subsequently affect pre- and post-fledging survival, as well as size and breeding probability as an adult. We predicted that long-term declines in C. subspathacea have affected gosling growth rates, despite the potential of behavior to buffer changes in food availability during brood rearing. We used Bayesian hierarchical mixed-effects models to examine long-term (1987 – 2015) shifts in brant behavior during brood-rearing, forage availability, and gosling growth rates at the Tutakoke River colony. We showed that locomotion behaviors have increased (β = 0.05, 95% CRI 0.032 – 0.068) while resting behaviors have decreased (β = -0.024, 95% CRI -0.041 – -0.007), potentially in response to long-term shifts in forage availability and brood density. Concurrently, gosling growth rates have decreased substantially (β = -0.096, 95% CRI -0.198 – -0.014) despite shifts in behavior, mirroring long-term declines in the abundance of C. subspathacea (β = -0.194, 95% CRI -0.350 – -0.037). These results have important implications for individual fitness and population viability, where shifts in gosling behavior putatively fail to mitigate long-term declines in forage availability.","language":"English","publisher":"Wiley","doi":"10.1002/ece3.5118","collaboration":"USFWS","usgsCitation":"Lohman, M.G., Riecke, T., Acevedo, C.R., Person, B.T., Schmutz, J.A., Uher-Koch, B.D., and Sedinger, J.S., 2019, Changes in behavior are unable to disrupt a trophic cascade involving a specialist herbivore and its food plant, v. 9, no. 9, p. 5281-5291, https://doi.org/10.1002/ece3.5118.","productDescription":"11 p.","startPage":"5281","endPage":"5291","ipdsId":"IP-101069","costCenters":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"links":[{"id":467722,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.5118","text":"Publisher Index Page"},{"id":437507,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9CJ2YZQ","text":"USGS data release","linkHelpText":"Aerial Imagery Captured at Nesting Pacific Black Brant (Branta bernicla nigricans) Colonies on the Yukon-Kuskokwim Delta, Alaska, 1993-2016"},{"id":368148,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"9","issue":"9","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-08","publicationStatus":"PW","contributors":{"authors":[{"text":"Lohman, Madeleine G","contributorId":219606,"corporation":false,"usgs":false,"family":"Lohman","given":"Madeleine","email":"","middleInitial":"G","affiliations":[{"id":24706,"text":"University of Nevada-Reno","active":true,"usgs":false}],"preferred":false,"id":772655,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Riecke, Thomas V.","contributorId":171482,"corporation":false,"usgs":false,"family":"Riecke","given":"Thomas V.","affiliations":[],"preferred":false,"id":772656,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Acevedo, Cheyenne R","contributorId":219607,"corporation":false,"usgs":false,"family":"Acevedo","given":"Cheyenne","email":"","middleInitial":"R","affiliations":[{"id":24706,"text":"University of Nevada-Reno","active":true,"usgs":false}],"preferred":false,"id":772657,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Person, Brian T.","contributorId":107457,"corporation":false,"usgs":false,"family":"Person","given":"Brian","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":772658,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Schmutz, Joel A. 0000-0002-6516-0836 jschmutz@usgs.gov","orcid":"https://orcid.org/0000-0002-6516-0836","contributorId":1805,"corporation":false,"usgs":true,"family":"Schmutz","given":"Joel","email":"jschmutz@usgs.gov","middleInitial":"A.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":772659,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Uher-Koch, Brian D. 0000-0002-1885-0260 buher-koch@usgs.gov","orcid":"https://orcid.org/0000-0002-1885-0260","contributorId":5117,"corporation":false,"usgs":true,"family":"Uher-Koch","given":"Brian","email":"buher-koch@usgs.gov","middleInitial":"D.","affiliations":[{"id":117,"text":"Alaska Science Center Biology WTEB","active":true,"usgs":true}],"preferred":true,"id":772654,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Sedinger, James S.","contributorId":213694,"corporation":false,"usgs":false,"family":"Sedinger","given":"James","email":"","middleInitial":"S.","affiliations":[{"id":12742,"text":"University of Nevada Reno","active":true,"usgs":false}],"preferred":false,"id":772660,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70203427,"text":"70203427 - 2019 - A high carbon content of the Hawaiian mantle from olivine-hosted melt inclusions","interactions":[],"lastModifiedDate":"2019-06-18T12:07:24","indexId":"70203427","displayToPublicDate":"2019-04-06T12:11:02","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1759,"text":"Geochimica et Cosmochimica Acta","active":true,"publicationSubtype":{"id":10}},"title":"A high carbon content of the Hawaiian mantle from olivine-hosted melt inclusions","docAbstract":"The deep mantle carbon content and flux are fundamental quantities in understanding global volatile cycles and distributions. Here, we present CO2 concentrations measured in 407 olivine-hosted melt inclusions from Hualalai, Kilauea, Koolau, Loihi, and Mauna Loa to constrain the Hawaiian mantle CO2 content and flux. Quantification of melt inclusion CO2 is complicated by the ubiquitous presence of vapor or “shrinkage” bubbles. The contribution from exsolved shrinkage bubble CO2 was determined from the measured bubble size and a CO2 equation of state, and added to the dissolved CO2 to reconstruct total melt inclusion CO2 concentrations. Bubbles typically contain ~90% of melt inclusion C, much of which may be sequestered in precipitated phases on bubble walls, and thus not amenable to measurement by Raman spectroscopy. Based on our dataset of total (dissolved + bubble) CO2 concentrations, we estimate that parental melts from the five Hawaiian volcanoes have CO2 concentrations ranging from 3900 to 10,000 ppm CO2. Among the active volcanoes, CO2 concentrations decrease to the northwest, likely reflecting mantle source heterogeneity, although differences in the depths of the magma chambers may also play a role. Mantle sources of the Hawaiian volcanoes range from 380 to 480 ppm CO2 suggesting that the Hawaiian plume is at least a factor of ~4 more C-rich than the MORB mantle. This enrichment is likely due to the presence of recycled surficial C and/or C-rich primitive material in the Hawaiian mantle.","language":"English","publisher":"Elsevier","doi":"10.1016/j.gca.2019.04.001","usgsCitation":"Tucker, J.M., Hauri, E.H., Marske, J.P., Pietruszka, A., Garcia, M.O., and Trusdell, F., 2019, A high carbon content of the Hawaiian mantle from olivine-hosted melt inclusions: Geochimica et Cosmochimica Acta, v. 254, p. 156-172, https://doi.org/10.1016/j.gca.2019.04.001.","productDescription":"17 p.","startPage":"156","endPage":"172","ipdsId":"IP-103025","costCenters":[{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true}],"links":[{"id":363767,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United 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P.","contributorId":172801,"corporation":false,"usgs":false,"family":"Marske","given":"Jared","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":762667,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Pietruszka, Aaron 0000-0002-2826-9509 apietruszka@usgs.gov","orcid":"https://orcid.org/0000-0002-2826-9509","contributorId":192031,"corporation":false,"usgs":true,"family":"Pietruszka","given":"Aaron","email":"apietruszka@usgs.gov","affiliations":[{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":762664,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Garcia, Michael O","contributorId":215129,"corporation":false,"usgs":false,"family":"Garcia","given":"Michael","email":"","middleInitial":"O","affiliations":[],"preferred":false,"id":762668,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Trusdell, Frank 0000-0002-0681-0528 trusdell@usgs.gov","orcid":"https://orcid.org/0000-0002-0681-0528","contributorId":215567,"corporation":false,"usgs":true,"family":"Trusdell","given":"Frank","email":"trusdell@usgs.gov","affiliations":[{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true}],"preferred":true,"id":762669,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70203719,"text":"70203719 - 2019 - Perfluoroalkyl contaminant exposure in tree swallows nesting at Clarks Marsh, Oscoda, Michigan, USA","interactions":[],"lastModifiedDate":"2019-06-06T10:13:59","indexId":"70203719","displayToPublicDate":"2019-04-06T10:12:05","publicationYear":"2019","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":887,"text":"Archives of Environmental Contamination and Toxicology","active":true,"publicationSubtype":{"id":10}},"title":"Perfluoroalkyl contaminant exposure in tree swallows nesting at Clarks Marsh, Oscoda, Michigan, USA","docAbstract":"A site in north eastern Michigan, Oscoda Township, has some of the highest recorded exposure in birds to perfluorinated substances (PFASs) in the U.S.  Some egg and plasma concentrations at that location exceeded the lowest reproductive effect threshold established for two avian laboratory species.  The objectives of this study were to determine whether there were reproductive effects or physiological responses in a model bird species, the tree swallow (Tachycineta bicolor), associated with this extremely high exposure to PFASs.  The lack of exposure above background to other contaminants at this site allowed for an assessment of PFAS effects without the complication that responses may be caused by other contaminants.  A secondary objective was to determine the distribution of PFASs in multiple tissue types to better understand and interpret residues in different tissues.  This can best be done at highly exposed locations where tissue concentrations would be expected to be above detectable levels if they are present in that tissue.  There were no demonstrable effects of PFAS exposure on reproduction nor on most physiological responses.","language":"English","publisher":"Springer ","doi":"10.1007/s00244-019-00620-1","usgsCitation":"Custer, C.M., Custer, T.W., Delaney, R., Dummer, P.M., Schultz, S.L., and Karouna-Renier, N., 2019, Perfluoroalkyl contaminant exposure in tree swallows nesting at Clarks Marsh, Oscoda, Michigan, USA: Archives of Environmental Contamination and Toxicology, v. 77, no. 1, p. 1-13, https://doi.org/10.1007/s00244-019-00620-1.","productDescription":"13 p.","startPage":"1","endPage":"13","ipdsId":"IP-103625","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true},{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"links":[{"id":437508,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/P9KKECVJ","text":"USGS data release","linkHelpText":"Perfluoroalkyl contaminant exposure in tree swallows nesting at Clarks Marsh, Oscoda, MI Dataset"},{"id":364426,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":364423,"type":{"id":15,"text":"Index Page"},"url":"https://doi.org/10.1007/s00244-019-00620-1"}],"country":"United States","state":"Michigan","county":"Oscoda County","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"Polygon\",\"coordinates\":[[[-83.89,44.8553],[-83.8892,44.7247],[-83.889,44.6809],[-83.8883,44.6325],[-83.8878,44.5946],[-83.8861,44.507],[-84.0098,44.5071],[-84.1309,44.5061],[-84.1808,44.5061],[-84.2507,44.5059],[-84.373,44.5075],[-84.3734,44.596],[-84.373,44.6698],[-84.3729,44.856],[-84.1328,44.8552],[-83.89,44.8553]]]},\"properties\":{\"name\":\"Oscoda\",\"state\":\"MI\"}}]}","volume":"77","issue":"1","publishingServiceCenter":{"id":15,"text":"Madison PSC"},"noUsgsAuthors":false,"publicationDate":"2019-04-06","publicationStatus":"PW","contributors":{"authors":[{"text":"Custer, Christine M. 0000-0003-0500-1582 ccuster@usgs.gov","orcid":"https://orcid.org/0000-0003-0500-1582","contributorId":1143,"corporation":false,"usgs":true,"family":"Custer","given":"Christine","email":"ccuster@usgs.gov","middleInitial":"M.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":763789,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Custer, Thomas W. 0000-0003-3170-6519","orcid":"https://orcid.org/0000-0003-3170-6519","contributorId":216059,"corporation":false,"usgs":false,"family":"Custer","given":"Thomas","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":763790,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Delaney, Robert","contributorId":216060,"corporation":false,"usgs":false,"family":"Delaney","given":"Robert","email":"","affiliations":[{"id":17835,"text":"Michigan Department of Environmental Quality","active":true,"usgs":false}],"preferred":false,"id":763791,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Dummer, Paul M. 0000-0002-2055-9480 pdummer@usgs.gov","orcid":"https://orcid.org/0000-0002-2055-9480","contributorId":3015,"corporation":false,"usgs":true,"family":"Dummer","given":"Paul","email":"pdummer@usgs.gov","middleInitial":"M.","affiliations":[{"id":606,"text":"Upper Midwest Environmental Sciences Center","active":true,"usgs":true}],"preferred":true,"id":763792,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Schultz, Sandra L. 0000-0003-3394-2857 sschultz@usgs.gov","orcid":"https://orcid.org/0000-0003-3394-2857","contributorId":5966,"corporation":false,"usgs":true,"family":"Schultz","given":"Sandra","email":"sschultz@usgs.gov","middleInitial":"L.","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":763793,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Karouna-Renier, Natalie 0000-0001-7127-033X nkarouna@usgs.gov","orcid":"https://orcid.org/0000-0001-7127-033X","contributorId":200983,"corporation":false,"usgs":true,"family":"Karouna-Renier","given":"Natalie","email":"nkarouna@usgs.gov","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":763794,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
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