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,{"id":70171509,"text":"70171509 - 2011 - The Hydrogeology of the San Juan Mountains Chapter 5","interactions":[],"lastModifiedDate":"2019-06-21T14:55:24","indexId":"70171509","displayToPublicDate":"2011-12-23T23:45:00","publicationYear":"2011","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"Chapter 5","title":"The Hydrogeology of the San Juan Mountains Chapter 5","docAbstract":"<p>Knowledge of the occurrence, storage, and flow of groundwater in mountainous regions is limited by the lack of integrated data from wells, streams, springs, and climate. In his comprehensive treatment of the hydrogeology of the San Luis Valley, Huntley (1979) hypothesized that the underlying, fractured volcanic bedrock of the San Juan Mountains has relatively high bulk permeability and a regional-scale water table with a low hydraulic gradient. Other (some more recent) studies of fractured crystalline bedrock in mountainous terrain indicate that these rock units can act as aquifers (Kahn et al. 2008; Manning and Caine 2007; Robinson 1978; Stober and Bucher 2005). The body of recent work also suggests that the conception that fractured crystalline bedrock is of such low permeability that it constitutes a “no-flow zone” may be inappropriate. In addition to establishing a new baseline, the data presented here are used to test Huntley’s (1979) hypotheses that suggest that the San Juan Mountains may be underlain by a substantial groundwater system. With the advent of computers and digital databases, many types of publicly available data can be used to test hypotheses and provide new insights into mountain hydrogeology at the regional scale in the San Juan Mountains. Plate 16 illustrates processes that suggest several fundamental questions arising from our lack of knowledge of mountain hydrogeology. These questions include: What are the&nbsp;dynamic interrelationships among the tectonics of mountain building, climate, and groundwater, and what are the time scales over which associated processes operate? How does extreme topographic relief allow for groundwater recharge along steep surfaces rather than simply causing precipitation to run off ? How does extreme relief translate into hydraulic gradients that drive groundwater flow? Can extreme gradients drive large volumes of meteoric water deep into the Earth’s upper crust? Once in the subsurface, what are the residence times of these waters? Finally, how does complex geology, commonly associated with mountainous terrain, influence these processes and control potentially heterogeneous and tortuous flow pathways? This chapter presents a synthesis of hydrogeological data, in a reconnaissance style, at the regional scale for the San Juan Mountains. Analyses of these data shed some light on the questions posed earlier for the San Juan Mountains and on mountain hydrogeologic processes in general. These analyses are based on public digital data from geologic and topographic maps, precipitation networks, stream gauges, groundwater wells, and springs. These data can be integrated using the hydrologic cycle expressed as a mass balance between inputs and outputs. The data types noted earlier form the basic set of measurements used to explore, characterize, and quantify elements of the hydrologic cycle. This exploration at a variety of scales yields insight into the relationships among the physical geological framework, climatological and hydrological budgets, and the hydraulic properties of the major aquifers in the San Juan Mountains. Each of these factors has been broken down and investigated separately and then integrated at the end of the chapter, using a conceptual model. Although the San Juan Mountains contain extensive precious- and base-metal deposits that have led to natural and mining-related groundwater contamination, this topic is not addressed here. Interested readers should refer to the extensive body of US Geological Survey work in Gray et al. (1994), Plumlee et al. (1995), Wirt et al. (1999), Johnson and Yager (2006), Johnson et al. (2007), and Church, von Guerard, and Finger (2007). Huntley (1979) also provided a large database for regional hydro-geochemistry of the San Juan Mountains (SJM).</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"The Eastern San Juan Mountains Their Ecology, Geology, and Human History","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"University Press of Colorado","publisherLocation":"Boulder, CO","isbn":"978-1-60732-084-5","usgsCitation":"Caine, J.S., and Wilson, A.B., 2011, The Hydrogeology of the San Juan Mountains Chapter 5, chap. Chapter 5 <i>of</i> The Eastern San Juan Mountains Their Ecology, Geology, and Human History, p. 79-98.","productDescription":"20 p.","startPage":"79","endPage":"98","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-003416","costCenters":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"links":[{"id":322074,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":322070,"type":{"id":15,"text":"Index Page"},"url":"https://www.upcolorado.com/university-press-of-colorado/item/1923-the-eastern-san-juan-mountains","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Colorado","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -106.91276550292969,\n              37.421980615353675\n            ],\n            [\n              -106.91276550292969,\n              37.496652341233364\n            ],\n            [\n              -106.75758361816406,\n              37.496652341233364\n            ],\n            [\n              -106.75758361816406,\n              37.421980615353675\n            ],\n            [\n              -106.91276550292969,\n              37.421980615353675\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","tableOfContents":"<p><br data-mce-bogus=\"1\"></p>","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"575158bbe4b053f0edd03c93","contributors":{"editors":[{"text":"Blair, Robert","contributorId":70008,"corporation":false,"usgs":true,"family":"Blair","given":"Robert","affiliations":[],"preferred":false,"id":631559,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Bracksieck, George","contributorId":169938,"corporation":false,"usgs":false,"family":"Bracksieck","given":"George","email":"","affiliations":[],"preferred":false,"id":631560,"contributorType":{"id":2,"text":"Editors"},"rank":2}],"authors":[{"text":"Caine, Jonathan S. 0000-0002-7269-6989 jscaine@usgs.gov","orcid":"https://orcid.org/0000-0002-7269-6989","contributorId":1272,"corporation":false,"usgs":true,"family":"Caine","given":"Jonathan","email":"jscaine@usgs.gov","middleInitial":"S.","affiliations":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"preferred":false,"id":631533,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wilson, Anna B. 0000-0002-9737-2614 awilson@usgs.gov","orcid":"https://orcid.org/0000-0002-9737-2614","contributorId":1619,"corporation":false,"usgs":true,"family":"Wilson","given":"Anna","email":"awilson@usgs.gov","middleInitial":"B.","affiliations":[{"id":171,"text":"Central Mineral and Environmental Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":631532,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70006336,"text":"sir20115222 - 2011 - Assessing controls on perched saturated zones beneath the Idaho Nuclear Technology and Engineering Center, Idaho","interactions":[],"lastModifiedDate":"2012-03-08T17:16:42","indexId":"sir20115222","displayToPublicDate":"2011-12-23T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5222","title":"Assessing controls on perched saturated zones beneath the Idaho Nuclear Technology and Engineering Center, Idaho","docAbstract":"Waste byproducts associated with operations at the Idaho Nuclear Technology and Engineering Center (INTEC) have the potential to contaminate the eastern Snake River Plain (ESRP) aquifer. Recharge to the ESRP aquifer is controlled largely by the alternating stratigraphy of fractured volcanic rocks and sedimentary interbeds within the overlying vadose zone and by the availability of water at the surface. Beneath the INTEC facilities, localized zones of saturation perched on the sedimentary interbeds are of particular concern because they may facilitate accelerated transport of contaminants. The sources and timing of natural and anthropogenic recharge to the perched zones are poorly understood. Simple approaches for quantitative characterization of this complex, variably saturated flow system are needed to assess potential scenarios for contaminant transport under alternative remediation strategies. During 2009-2011, the U.S. Geological Survey (USGS), in cooperation with the U.S. Department of Energy, employed data analysis and numerical simulations with a recently developed model of preferential flow to evaluate the sources and quantity of recharge to the perched zones. Piezometer, tensiometer, temperature, precipitation, and stream-discharge data were analyzed, with particular focus on the possibility of contributions to the perched zones from snowmelt and flow in the neighboring Big Lost River (BLR). Analysis of the timing and magnitude of subsurface dynamics indicate that streamflow provides local recharge to the shallow, intermediate, and deep perched saturated zones within 150 m of the BLR; at greater distances from the BLR the influence of streamflow on recharge is unclear. Perched water-level dynamics in most wells analyzed are consistent with findings from previous geochemical analyses, which suggest that a combination of annual snowmelt and anthropogenic sources (for example, leaky pipes and drainage ditches) contribute to recharge of shallow and intermediate perched zones throughout much of INTEC. The source-responsive fluxes model was parameterized to simulate recharge via preferential flow associated with intermittent episodes of streamflow in the BLR. The simulations correspond reasonably well to the observed hydrologic response within the shallow perched zone. Good model performance indicates that source-responsive flow through a limited number of connected fractures contributes substantially to the perched-zone dynamics. The agreement between simulated and observed perched-zone dynamics suggest that the source-responsive fluxes model can provide a valuable tool for quantifying rapid preferential flow processes that may result from different land management scenarios.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115222","collaboration":"Prepared in cooperation with the U.S. Department of Energy","usgsCitation":"Mirus, B.B., Perkins, K.S., and Nimmo, J.R., 2011, Assessing controls on perched saturated zones beneath the Idaho Nuclear Technology and Engineering Center, Idaho: U.S. Geological Survey Scientific Investigations Report 2011-5222, vi, 20 p., https://doi.org/10.3133/sir20115222.","productDescription":"vi, 20 p.","onlineOnly":"Y","costCenters":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"links":[{"id":116400,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5222.gif"},{"id":112312,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5222/","linkFileType":{"id":5,"text":"html"}}],"state":"Idaho","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5059edd0e4b0c8380cd49a0f","contributors":{"authors":[{"text":"Mirus, Benjamin B. 0000-0001-5550-014X bbmirus@usgs.gov","orcid":"https://orcid.org/0000-0001-5550-014X","contributorId":4064,"corporation":false,"usgs":true,"family":"Mirus","given":"Benjamin","email":"bbmirus@usgs.gov","middleInitial":"B.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true},{"id":5077,"text":"Northwest Regional Director's Office","active":true,"usgs":true},{"id":5061,"text":"National Cooperative Geologic Mapping and Landslide Hazards","active":true,"usgs":true}],"preferred":true,"id":354320,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Perkins, Kim S.","contributorId":106963,"corporation":false,"usgs":true,"family":"Perkins","given":"Kim","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":354321,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Nimmo, John R. 0000-0001-8191-1727 jrnimmo@usgs.gov","orcid":"https://orcid.org/0000-0001-8191-1727","contributorId":757,"corporation":false,"usgs":true,"family":"Nimmo","given":"John","email":"jrnimmo@usgs.gov","middleInitial":"R.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":354319,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70003618,"text":"70003618 - 2011 - The 25 October 2010 Mentawai tsunami earthquake, from real-time discriminants, finite-fault rupture, and tsunami excitation","interactions":[],"lastModifiedDate":"2021-02-25T21:12:04.563444","indexId":"70003618","displayToPublicDate":"2011-12-22T13:39:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1807,"text":"Geophysical Research Letters","active":true,"publicationSubtype":{"id":10}},"title":"The 25 October 2010 Mentawai tsunami earthquake, from real-time discriminants, finite-fault rupture, and tsunami excitation","docAbstract":"<p><span class=\"paraNumber\"><span>&nbsp;</span></span><span>The moment magnitude 7.8 earthquake that struck offshore the Mentawai islands in western Indonesia on 25 October 2010 created a locally large tsunami that caused more than 400 human causalities. We identify this earthquake as a rare slow‐source tsunami earthquake based on: 1) disproportionately large tsunami waves; 2) excessive rupture duration near 125 s; 3) predominantly shallow, near‐trench slip determined through finite‐fault modeling; and 4) deficiencies in energy‐to‐moment and energy‐to‐duration‐cubed ratios, the latter in near‐real time. We detail the real‐time solutions that identified the slow‐nature of this event, and evaluate how regional reductions in crustal rigidity along the shallow trench as determined by reduced rupture velocity contributed to increased slip, causing the 5–9 m local tsunami runup and observed transoceanic wave heights observed 1600 km to the southeast.</span></p>","language":"English","publisher":"American Geophysical Union","publisherLocation":"Washington, D.C.","doi":"10.1029/2010GL046498","usgsCitation":"Newman, A.V., Hayes, G.P., Wei, Y., and Convers, J., 2011, The 25 October 2010 Mentawai tsunami earthquake, from real-time discriminants, finite-fault rupture, and tsunami excitation: Geophysical Research Letters, v. 38, no. 5, L05302, 7 p., https://doi.org/10.1029/2010GL046498.","productDescription":"L05302, 7 p.","temporalStart":"2010-10-25","temporalEnd":"2010-10-25","costCenters":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"links":[{"id":204346,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Indonesia","otherGeospatial":"Mentawai Islands","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              101.6070556640625,\n              -3.9409805788555237\n            ],\n            [\n              98.9044189453125,\n              -0.5987439850125229\n            ],\n            [\n              97.9925537109375,\n              -1.197422590365017\n            ],\n            [\n              100.04150390625,\n              -3.431174857220211\n            ],\n            [\n              101.1785888671875,\n              -4.253290341301223\n            ],\n            [\n              101.6070556640625,\n              -3.9409805788555237\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"38","issue":"5","noUsgsAuthors":false,"publicationDate":"2011-03-05","publicationStatus":"PW","scienceBaseUri":"505ba650e4b08c986b321049","contributors":{"authors":[{"text":"Newman, Andrew V.","contributorId":32664,"corporation":false,"usgs":true,"family":"Newman","given":"Andrew","email":"","middleInitial":"V.","affiliations":[],"preferred":false,"id":347975,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hayes, Gavin P. 0000-0003-3323-0112 ghayes@usgs.gov","orcid":"https://orcid.org/0000-0003-3323-0112","contributorId":842,"corporation":false,"usgs":true,"family":"Hayes","given":"Gavin","email":"ghayes@usgs.gov","middleInitial":"P.","affiliations":[{"id":300,"text":"Geologic Hazards Science Center","active":true,"usgs":true}],"preferred":false,"id":347974,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Wei, Yong","contributorId":99691,"corporation":false,"usgs":true,"family":"Wei","given":"Yong","email":"","affiliations":[],"preferred":false,"id":347977,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Convers, Jaime","contributorId":77653,"corporation":false,"usgs":true,"family":"Convers","given":"Jaime","email":"","affiliations":[],"preferred":false,"id":347976,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70003683,"text":"70003683 - 2011 - Testing founder effect speciation: Divergence population genetics of the Spoonbills <i>Platalea regia</i> and <i>Pl. minor</i> (Threskiornithidae, Aves)","interactions":[],"lastModifiedDate":"2012-02-02T00:16:00","indexId":"70003683","displayToPublicDate":"2011-12-22T12:44:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2773,"text":"Molecular Biology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Testing founder effect speciation: Divergence population genetics of the Spoonbills <i>Platalea regia</i> and <i>Pl. minor</i> (Threskiornithidae, Aves)","docAbstract":"Although founder effect speciation has been a popular theoretical model for the speciation of geographically isolated taxa, its empirical importance has remained difficult to evaluate due to the intractability of past demography, which in a founder effect speciation scenario would involve a speciational bottleneck in the emergent species and the complete cessation of gene flow following divergence. Using regression-weighted approximate Bayesian computation, we tested the validity of these two fundamental conditions of founder effect speciation in a pair of sister species with disjunct distributions: the royal spoonbill <i>Platalea regia</i> in Australasia and the black-faced spoonbill <i>Pl. minor</i> in eastern Asia. When compared with genetic polymorphism observed at 20 nuclear loci in the two species, simulations showed that the founder effect speciation model had an extremely low posterior probability (1.55 &times; 10<sup>-8</sup>) of producing the extant genetic pattern. In contrast, speciation models that allowed for postdivergence gene flow were much more probable (posterior probabilities were 0.37 and 0.50 for the bottleneck with gene flow and the gene flow models, respectively) and postdivergence gene flow persisted for a considerable period of time (more than 80% of the divergence history in both models) following initial divergence (median = 197,000 generations, 95% credible interval [CI]: 50,000-478,000, for the bottleneck with gene flow model; and 186,000 generations, 95% CI: 45,000-477,000, for the gene flow model). Furthermore, the estimated population size reduction in <i>Pl. regia</i> to 7,000 individuals (median, 95% CI: 487-12,000, according to the bottleneck with gene flow model) was unlikely to have been severe enough to be considered a bottleneck. Therefore, these results do not support founder effect speciation in <i>Pl. regia</i> but indicate instead that the divergence between <i>Pl. regia</i> and <i>Pl. minor</i> was probably driven by selection despite continuous gene flow. In this light, we discuss the potential importance of evolutionarily labile traits with significant fitness consequences, such as migratory behavior and habitat preference, in facilitating divergence of the spoonbills.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Molecular Biology and Evolution","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Oxford Journals","publisherLocation":"Oxford, UK","doi":"10.1093/molbev/msq210","usgsCitation":"Yeung, C.K., Tsai, P., Chesser, R., Lin, R., Yao, C., Tian, X., and Li, S., 2011, Testing founder effect speciation: Divergence population genetics of the Spoonbills <i>Platalea regia</i> and <i>Pl. minor</i> (Threskiornithidae, Aves): Molecular Biology and Evolution, v. 28, no. 1, p. 473-482, https://doi.org/10.1093/molbev/msq210.","productDescription":"10 p.","startPage":"473","endPage":"482","numberOfPages":"10","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":474839,"rank":101,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/molbev/msq210","text":"Publisher Index Page"},{"id":204182,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":21731,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://dx.doi.org/10.1093/molbev/msq210","linkFileType":{"id":5,"text":"html"}}],"volume":"28","issue":"1","noUsgsAuthors":false,"publicationDate":"2010-08-12","publicationStatus":"PW","scienceBaseUri":"505ba5c7e4b08c986b320c88","contributors":{"authors":[{"text":"Yeung, Carol K.L.","contributorId":72113,"corporation":false,"usgs":true,"family":"Yeung","given":"Carol","email":"","middleInitial":"K.L.","affiliations":[],"preferred":false,"id":348320,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Tsai, Pi-Wen","contributorId":35447,"corporation":false,"usgs":true,"family":"Tsai","given":"Pi-Wen","email":"","affiliations":[],"preferred":false,"id":348317,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Chesser, R. Terry 0000-0003-4389-7092","orcid":"https://orcid.org/0000-0003-4389-7092","contributorId":87669,"corporation":false,"usgs":true,"family":"Chesser","given":"R. Terry","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":348321,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Lin, Rong-Chien","contributorId":21676,"corporation":false,"usgs":true,"family":"Lin","given":"Rong-Chien","email":"","affiliations":[],"preferred":false,"id":348315,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Yao, Cheng-Te","contributorId":63147,"corporation":false,"usgs":true,"family":"Yao","given":"Cheng-Te","email":"","affiliations":[],"preferred":false,"id":348318,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Tian, Xiu-Hua","contributorId":25687,"corporation":false,"usgs":true,"family":"Tian","given":"Xiu-Hua","email":"","affiliations":[],"preferred":false,"id":348316,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Li, Shou-Hsien","contributorId":63148,"corporation":false,"usgs":true,"family":"Li","given":"Shou-Hsien","email":"","affiliations":[],"preferred":false,"id":348319,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70006343,"text":"70006343 - 2011 - Spatial capture-recapture models for search-encounter data","interactions":[],"lastModifiedDate":"2021-05-18T15:12:59.888696","indexId":"70006343","displayToPublicDate":"2011-12-22T12:30:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2717,"text":"Methods in Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Spatial capture-recapture models for search-encounter data","docAbstract":"<p><b>1.</b> Spatial capture&ndash;recapture models make use of auxiliary data on capture location to provide density estimates for animal populations. Previously, models have been developed primarily for fixed trap arrays which define the observable locations of individuals by a set of discrete points.</p> <p><b>2.</b> Here, we develop a class of models for 'search-encounter' data, i.e. for detections of recognizable individuals in continuous space, not restricted to trap locations. In our hierarchical model, detection probability is related to the average distance between individual location and the survey path. The locations are allowed to change over time owing to movements of individuals, and individual locations are related formally by a model describing individual activity or home range centre which is itself regarded as a latent variable in the model. We provide a Bayesian analysis of the model in WinBUGS, and develop a custom MCMC algorithm in the R language.</p> <p><b>3.</b> The model is applied to simulated data and to territory mapping data for the Willow Tit from the Swiss Breeding Bird Survey MHB. While the observed density was 15 territories per nominal 1 km<sup>2</sup> plot of unknown effective sample area, the model produced a density estimate of 21&#8729;12 territories per square km (95% posterior interval: 17&ndash;26).</p> <p><b>4.</b> Spatial capture&ndash;recapture models are relevant to virtually all animal population studies that seek to estimate population size or density, yet existing models have been proposed mainly for conventional sampling using arrays of traps. Our model for search-encounter data, where the spatial pattern of searching can be arbitrary and may change over occasions, greatly expands the scope and utility of spatial capture&ndash;recapture models.</p>","language":"English","publisher":"British Ecological Society","publisherLocation":"London, England","doi":"10.1111/j.2041-210X.2011.00116.x","usgsCitation":"Royle, J., Kery, M., and Guelat, J., 2011, Spatial capture-recapture models for search-encounter data: Methods in Ecology and Evolution, v. 2, no. 6, p. 602-611, https://doi.org/10.1111/j.2041-210X.2011.00116.x.","productDescription":"10 p.","startPage":"602","endPage":"611","numberOfPages":"10","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":474840,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/j.2041-210x.2011.00116.x","text":"Publisher Index Page"},{"id":204258,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"2","issue":"6","noUsgsAuthors":false,"publicationDate":"2011-05-18","publicationStatus":"PW","scienceBaseUri":"505b945de4b08c986b31aa2f","contributors":{"authors":[{"text":"Royle, J. Andrew 0000-0003-3135-2167","orcid":"https://orcid.org/0000-0003-3135-2167","contributorId":80808,"corporation":false,"usgs":true,"family":"Royle","given":"J. Andrew","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":354340,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Kery, Marc","contributorId":38680,"corporation":false,"usgs":true,"family":"Kery","given":"Marc","affiliations":[],"preferred":false,"id":354339,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Guelat, Jerome","contributorId":27991,"corporation":false,"usgs":true,"family":"Guelat","given":"Jerome","email":"","affiliations":[],"preferred":false,"id":354338,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70006344,"text":"70006344 - 2011 - Patterns of morphological variation amongst semifossorial shrews in the highlands of Guatemala, with the description of a new species (Mammalia, Soricomorpha, Soricidae)","interactions":[],"lastModifiedDate":"2021-05-21T20:05:25.541349","indexId":"70006344","displayToPublicDate":"2011-12-22T11:17:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3810,"text":"Zoological Journal of the Linnean Society","active":true,"publicationSubtype":{"id":10}},"title":"Patterns of morphological variation amongst semifossorial shrews in the highlands of Guatemala, with the description of a new species (Mammalia, Soricomorpha, Soricidae)","docAbstract":"Members of the <i>Cryptotis goldmani</i> group of small-eared shrews (Mammalia, Soricomorpha, Soricidae) represent a clade within the genus that is characterized by modifications of the forelimb that include broadened forefeet, elongated and broadened foreclaws, and massive humeri with enlarged processes. These modifications are consistent with greater adaptation to their semifossorial habits than other members of the genus. The species in this group occur discontinuously in temperate highlands from southern Tamaulipas, Mexico, to Honduras. In Guatemala, there are three species: the relatively widespread <i>Cryptotis goodwini</i> and two species (<i>Cryptotis lacertosus</i>, <i>Cryptotis mam</i>) endemic to highland forests in the Sierra de los Cuchumatanes of western Guatemala. Ongoing studies focusing on the relationships of variation in cranial and postcranial skeletal morphology have revealed a fourth species from remnant cloud forest in the Sierra de Yalijux, central Guatemala. In this paper, I describe this new species and characterize its morphology relative to other species in the <i>C. goldmani</i> group and to other species of <i>Cryptotis</i> in Guatemala. In addition, I summarize available details of its habitat and ecology.","language":"English","publisher":"The Linnean Society of London","publisherLocation":"London, England","doi":"10.1111/j.1096-3642.2011.00754.x","usgsCitation":"Woodman, N., 2011, Patterns of morphological variation amongst semifossorial shrews in the highlands of Guatemala, with the description of a new species (Mammalia, Soricomorpha, Soricidae): Zoological Journal of the Linnean Society, v. 163, no. 4, p. 1267-1288, https://doi.org/10.1111/j.1096-3642.2011.00754.x.","productDescription":"22 p.","startPage":"1267","endPage":"1288","numberOfPages":"21","costCenters":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"links":[{"id":474842,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/j.1096-3642.2011.00754.x","text":"Publisher Index Page"},{"id":204259,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Guatemala","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"Polygon\",\"coordinates\":[[[-90.09555,13.73534],[-90.60862,13.90977],[-91.23241,13.92783],[-91.68975,14.12622],[-92.22775,14.53883],[-92.20323,14.8301],[-92.08722,15.06458],[-92.22925,15.25145],[-91.74796,16.06656],[-90.46447,16.06956],[-90.43887,16.41011],[-90.60085,16.47078],[-90.71182,16.68748],[-91.08167,16.91848],[-91.45392,17.25218],[-91.00227,17.25466],[-91.00152,17.81759],[-90.06793,17.81933],[-89.14308,17.80832],[-89.15081,17.01558],[-89.22912,15.88694],[-88.93061,15.88727],[-88.60459,15.70638],[-88.51836,15.85539],[-88.22502,15.72772],[-88.68068,15.34625],[-89.15481,15.06642],[-89.22522,14.87429],[-89.14554,14.67802],[-89.35333,14.42413],[-89.58734,14.36259],[-89.53422,14.24482],[-89.72193,14.13423],[-90.06468,13.88197],[-90.09555,13.73534]]]},\"properties\":{\"name\":\"Guatemala\"}}]}","volume":"163","issue":"4","noUsgsAuthors":false,"publicationDate":"2011-11-25","publicationStatus":"PW","scienceBaseUri":"505a75e0e4b0c8380cd77dc9","contributors":{"authors":[{"text":"Woodman, Neal 0000-0003-2689-7373 nwoodman@usgs.gov","orcid":"https://orcid.org/0000-0003-2689-7373","contributorId":3547,"corporation":false,"usgs":true,"family":"Woodman","given":"Neal","email":"nwoodman@usgs.gov","affiliations":[{"id":531,"text":"Patuxent Wildlife Research Center","active":true,"usgs":true}],"preferred":true,"id":354341,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70006323,"text":"ofr20111294 - 2011 - Assessment of potential effects of water produced from coalbed natural gas development on macroinvertebrate and algal communities in the Powder River and Tongue River, Wyoming and Montana, 2010","interactions":[],"lastModifiedDate":"2012-03-08T17:16:42","indexId":"ofr20111294","displayToPublicDate":"2011-12-21T14:16:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-1294","title":"Assessment of potential effects of water produced from coalbed natural gas development on macroinvertebrate and algal communities in the Powder River and Tongue River, Wyoming and Montana, 2010","docAbstract":"<p>Ongoing development of coalbed natural gas in the Powder River structural basin in Wyoming and Montana led to formation of an interagency aquatic task group to address concerns about the effects of the resulting production water on biological communities in streams of the area. Ecological assessments, made from 2005&ndash;08 under the direction of the task group, indicated biological condition of the macroinvertebrate and algal communities in the middle reaches of the Powder was lower than in the upper or lower reaches. On the basis of the 2005&ndash;08 results, sampling of the macroinvertebrate and algae communities was conducted at 18 sites on the mainstem Powder River and 6 sites on the mainstem Tongue River in 2010. Sampling-site locations were selected on a paired approach, with sites located upstream and downstream of discharge points and tributaries associated with coalbed natural gas development. Differences in biological condition among site pairs were evaluated graphically and statistically using multiple lines of evidence that included macroinvertebrate and algal community metrics (such as taxa richness, relative abundance, functional feeding groups, and tolerance) and output from observed/expected (O/E) macroinvertebrate models from Wyoming and Montana.</p> <p>Multiple lines of evidence indicated a decline in biological condition in the middle reaches of the Powder River, potentially indicating cumulative effects from coalbed natural gas discharges within one or more reaches between Flying E Creek and Wild Horse Creek in Wyoming. The maximum concentrations of alkalinity in the Powder River also occurred in the middle reaches.</p> <p>Biological condition in the upper and lower reaches of the Powder River was variable, with declines between some site pairs, such as upstream and downstream of Dry Fork and Willow Creek, and increases at others, such as upstream and downstream of Beaver Creek. Biological condition at site pairs on the Tongue River showed an increase in one case, near the Wyoming-Montana border, and a decrease in another case, upstream of Tongue River Reservoir. Few significant differences were noted from upstream to downstream of Prairie Dog Creek, a major tributary to the Tongue River. Further study would be needed to confirm the observed patterns and choose areas to examine in greater detail.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20111294","collaboration":"Prepared in cooperation with the U.S. Department of the Interior Bureau of Land Management; Montana Department of Environmental Quality; Wyoming Department of Environmental Quality; and Wyoming Game and Fish Department","usgsCitation":"Peterson, D.A., Hargett, E.G., and Feldman, D.L., 2011, Assessment of potential effects of water produced from coalbed natural gas development on macroinvertebrate and algal communities in the Powder River and Tongue River, Wyoming and Montana, 2010: U.S. Geological Survey Open-File Report 2011-1294, vi, 34 p., https://doi.org/10.3133/ofr20111294.","productDescription":"vi, 34 p.","onlineOnly":"Y","temporalStart":"2010-01-01","temporalEnd":"2010-12-31","costCenters":[{"id":684,"text":"Wyoming Water Science Center","active":false,"usgs":true}],"links":[{"id":116862,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2011_1294.gif"},{"id":112270,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2011/1294/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Wyoming;Montana","otherGeospatial":"Powder River;Tongue River","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -107.25,43.5 ], [ -107.25,45.5 ], [ -105,45.5 ], [ -105,43.5 ], [ -107.25,43.5 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5059ee4ae4b0c8380cd49c99","contributors":{"authors":[{"text":"Peterson, David A. davep@usgs.gov","contributorId":1742,"corporation":false,"usgs":true,"family":"Peterson","given":"David","email":"davep@usgs.gov","middleInitial":"A.","affiliations":[],"preferred":true,"id":354307,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hargett, Eric G.","contributorId":89241,"corporation":false,"usgs":true,"family":"Hargett","given":"Eric","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":354309,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Feldman, David L.","contributorId":25689,"corporation":false,"usgs":true,"family":"Feldman","given":"David","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":354308,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70006326,"text":"ofr20111299 - 2011 - Results of time-domain electromagnetic soundings in Miami-Dade and southern Broward Counties, Florida","interactions":[],"lastModifiedDate":"2013-01-28T15:52:17","indexId":"ofr20111299","displayToPublicDate":"2011-12-21T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-1299","title":"Results of time-domain electromagnetic soundings in Miami-Dade and southern Broward Counties, Florida","docAbstract":"<p>Time-domain electromagnetic (TEM) soundings were made in Miami-Dade and southern Broward Counties to aid in mapping the landward extent of saltwater in the Biscayne aquifer. A total of 79 soundings were collected in settings ranging from urban to undeveloped land, with some of the former posing problems of land access and interference from anthropogenic features. TEM soundings combined with monitoring-well data were used to determine if the saltwater front had moved since the last time it was mapped, to provide additional spatial coverage where existing monitoring wells were insufficient, and to help interpret a previously collected helicopter electromagnetic (HEM) survey flown in the southernmost portion of the study area.</p> <p>TEM soundings were interpreted as layered resistivity-depth models. Using information from well logs and water-quality data, the resistivity of the freshwater saturated Biscayne aquifer is expected to be above 30 ohm-meters, and the saltwater-saturated aquifer will have resistivities of less than 10 ohm-meters allowing determination of water quality from the TEM interpretations. TEM models from 29 soundings were compared to electromagnetic induction logs collected in nearby monitoring wells. In general, the agreement of these results was very good, giving confidence in the use of the TEM data for mapping saltwater encroachment.</p>","language":"English","publisher":"U.S. Geological Society","publisherLocation":"Reston, VA","doi":"10.3133/ofr20111299","usgsCitation":"Fitterman, D.V., and Prinos, S.T., 2011, Results of time-domain electromagnetic soundings in Miami-Dade and southern Broward Counties, Florida: U.S. Geological Survey Open-File Report 2011-1299, ix, 289 p.; Supplemental Files Download, https://doi.org/10.3133/ofr20111299.","productDescription":"ix, 289 p.; Supplemental Files Download","onlineOnly":"Y","costCenters":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"links":[{"id":116863,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2011_1299.png"},{"id":112309,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2011/1299/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Florida","city":"Miami-dade;Broward","otherGeospatial":"Biscayne Aquifer","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505aabf0e4b0c8380cd86a81","contributors":{"authors":[{"text":"Fitterman, David V. dfitterman@usgs.gov","contributorId":1106,"corporation":false,"usgs":true,"family":"Fitterman","given":"David","email":"dfitterman@usgs.gov","middleInitial":"V.","affiliations":[{"id":211,"text":"Crustal Geophysics and Geochemistry Science Center","active":true,"usgs":true}],"preferred":true,"id":354310,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Prinos, Scott T. 0000-0002-5776-8956 stprinos@usgs.gov","orcid":"https://orcid.org/0000-0002-5776-8956","contributorId":4045,"corporation":false,"usgs":true,"family":"Prinos","given":"Scott","email":"stprinos@usgs.gov","middleInitial":"T.","affiliations":[{"id":156,"text":"Caribbean Water Science Center","active":true,"usgs":true},{"id":269,"text":"FLWSC-Ft. Lauderdale","active":true,"usgs":true}],"preferred":true,"id":354311,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70208558,"text":"70208558 - 2011 - Characterizing the performance of ecosystem models across time scales: A spectral analysis of the North American Carbon Program site‐level synthesis","interactions":[],"lastModifiedDate":"2020-02-20T09:57:53","indexId":"70208558","displayToPublicDate":"2011-12-20T16:09:53","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2320,"text":"Journal of Geophysical Research: Biogeosciences","active":true,"publicationSubtype":{"id":10}},"title":"Characterizing the performance of ecosystem models across time scales: A spectral analysis of the North American Carbon Program site‐level synthesis","docAbstract":"<p><span class=\"paraNumber\">[1]<span>&nbsp;</span></span><span>Ecosystem models are important tools for diagnosing the carbon cycle and projecting its behavior across space and time. Despite the fact that ecosystems respond to drivers at multiple time scales, most assessments of model performance do not discriminate different time scales. Spectral methods, such as wavelet analyses, present an alternative approach that enables the identification of the dominant time scales contributing to model performance in the frequency domain. In this study we used wavelet analyses to synthesize the performance of 21 ecosystem models at 9 eddy covariance towers as part of the North American Carbon Program's site‐level intercomparison. This study expands upon previous single‐site and single‐model analyses to determine what patterns of model error are consistent across a diverse range of models and sites. To assess the significance of model error at different time scales, a novel Monte Carlo approach was developed to incorporate flux observation error. Failing to account for observation error leads to a misidentification of the time scales that dominate model error. These analyses show that model error (1) is largest at the annual and 20–120 day scales, (2) has a clear peak at the diurnal scale, and (3) shows large variability among models in the 2–20 day scales. Errors at the annual scale were consistent across time, diurnal errors were predominantly during the growing season, and intermediate‐scale errors were largely event driven. Breaking spectra into discrete temporal bands revealed a significant model‐by‐band effect but also a nonsignificant model‐by‐site effect, which together suggest that individual models show consistency in their error patterns. Differences among models were related to model time step, soil hydrology, and the representation of photosynthesis and phenology but not the soil carbon or nitrogen cycles. These factors had the greatest impact on diurnal errors, were less important at annual scales, and had the least impact at intermediate time scales.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1029/2011JG001661","usgsCitation":"Dietze, M.C., Vargas, R., Richardson, A., Stoy, P.C., Anderson, R., Arain, M.A., Baker, I., Black, T.A., Chen, J.M., Ciais, P., Flanagan, L.B., Gough, C.M., Grant, R., Hollinger, D., Izaurralde, R.C., Kucharik, C., Lafleur, P., Liu, S., Lokupitiya, E., Luo, Y., Munger, J., Peng, C., Poulter, B., Price, D.T., Ricciuto, D., Riley, W.J., Sahoo, A., Schaefer, K., Suyker, A.E., Tian, H., Tonitto, C., Verbeeck, H., Verma, S.B., Wang, W., and Weng, E., 2011, Characterizing the performance of ecosystem models across time scales: A spectral analysis of the North American Carbon Program site‐level synthesis: Journal of Geophysical Research: Biogeosciences, v. 116, no. G4, G04029, 15 p., https://doi.org/10.1029/2011JG001661.","productDescription":"G04029, 15 p.","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":474843,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1029/2011jg001661","text":"Publisher Index Page"},{"id":372380,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Canada, United States","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -115.6640625,\n              31.952162238024975\n            ],\n            [\n              -93.1640625,\n              29.84064389983441\n            ],\n            [\n              -79.453125,\n              23.563987128451217\n            ],\n            [\n              -51.328125,\n              47.27922900257082\n            ],\n            [\n              -63.6328125,\n              68.78414378041504\n            ],\n            [\n              -77.6953125,\n              73.62778879339942\n            ],\n            [\n              -121.28906250000001,\n              74.4021625984244\n            ],\n            [\n              -126.21093749999999,\n              74.49641311694307\n            ],\n            [\n              -127.96875,\n              71.63599288330609\n            ],\n            [\n              -137.4609375,\n              70.25945200030638\n            ],\n            [\n              -155.7421875,\n              71.41317683396566\n            ],\n            [\n              -168.3984375,\n              69.16255790810501\n            ],\n            [\n              -166.640625,\n              59.88893689676585\n            ],\n            [\n              -164.53125,\n              54.16243396806779\n            ],\n            [\n              -146.95312499999997,\n              60.06484046010452\n            ],\n            [\n              -133.59375,\n              55.97379820507658\n            ],\n            [\n              -124.45312499999999,\n              46.07323062540835\n            ],\n            [\n              -124.45312499999999,\n              39.36827914916014\n            ],\n            [\n              -115.6640625,\n              31.952162238024975\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"116","issue":"G4","noUsgsAuthors":false,"publicationDate":"2011-12-20","publicationStatus":"PW","contributors":{"authors":[{"text":"Dietze, Michael C.","contributorId":15908,"corporation":false,"usgs":true,"family":"Dietze","given":"Michael","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":782472,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Vargas, Rodrigo","contributorId":172036,"corporation":false,"usgs":false,"family":"Vargas","given":"Rodrigo","affiliations":[],"preferred":false,"id":782473,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Richardson, Andrew D.","contributorId":105199,"corporation":false,"usgs":true,"family":"Richardson","given":"Andrew D.","affiliations":[],"preferred":false,"id":782474,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stoy, Paul C.","contributorId":204157,"corporation":false,"usgs":false,"family":"Stoy","given":"Paul","email":"","middleInitial":"C.","affiliations":[{"id":36555,"text":"Montana State University","active":true,"usgs":false}],"preferred":false,"id":782475,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Anderson, Ryan","contributorId":106029,"corporation":false,"usgs":true,"family":"Anderson","given":"Ryan","affiliations":[],"preferred":false,"id":782476,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Arain, M. 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,{"id":70006295,"text":"sir20115154 - 2011 - Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project","interactions":[],"lastModifiedDate":"2012-03-08T17:16:43","indexId":"sir20115154","displayToPublicDate":"2011-12-20T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5154","title":"Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project","docAbstract":"Groundwater quality in the approximately 3,900-square-mile (mi<sup>2</sup>) San Diego Drainages Hydrogeologic Province (hereinafter San Diego) study unit was investigated from May through July 2004 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in southwestern California in the counties of San Diego, Riverside, and Orange. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory.  The GAMA San Diego study was designed to provide a statistically robust assessment of untreated-groundwater quality within the primary aquifer systems. The assessment is based on water-quality and ancillary data collected by the USGS from 58 wells in 2004 and water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer systems (hereinafter referred to as the primary aquifers) were defined by the depth interval of the wells listed in the California Department of Public Health (CDPH) database for the San Diego study unit. The San Diego study unit consisted of four study areas: Temecula Valley (140 mi<sup>2</sup>), Warner Valley (34 mi<sup>2</sup>), Alluvial Basins (166 mi<sup>2</sup>), and Hard Rock (850 mi<sup>2</sup>). The quality of groundwater in shallow or deep water-bearing zones may differ from that in the primary aquifers. For example, shallow groundwater may be more vulnerable to surficial contamination than groundwater in deep water-bearing zones.  This study had two components: the status assessment and the understanding assessment. The first component of this study-the status assessment of the current quality of the groundwater resource-was assessed by using data from samples analyzed for volatile organic compounds (VOC), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. The status assessment is intended to characterize the quality of groundwater resources within the primary aquifers of the San Diego study unit, not the treated drinking water delivered to consumers by water purveyors. The second component of this study-the understanding assessment-identified the natural and human factors that affect groundwater quality by evaluating land use, well construction, and geochemical conditions of the aquifer. Results from these evaluations were used to help explain the occurrence and distribution of selected constituents in the study unit.  Relative-concentrations (sample concentration divided by benchmark concentration) were used as the primary metric for relating concentrations of constituents in groundwater samples to water-quality benchmarks for those constituents that have Federal and (or) California benchmarks. For organic and special-interest constituents, relative-concentrations were classified as high (> 1.0), moderate (> 0.1 and &le;1.0), and low (&le;0.1). For inorganic constituents, relative concentrations were classified as high (> 1.0), moderate (> 0.5 and &le;1.0), and low (&le;0.5). Grid-based and spatially weighted approaches were then used to evaluate the proportion of the primary aquifers (aquifer-scale proportions) with high, moderate, and low relative-concentrations for individual compounds and classes of constituents.  One or more of the inorganic constituents with health-based benchmarks were high (relative to those benchmarks) in 17.6 percent of the primary aquifers in the Temecula Valley, Warner Valley, and Alluvial Basins study areas (hereinafter also collectively referred to as the Alluvial Fill study areas because they are composed of alluvial fill aquifers), and in 25.0 percent of the Hard Rock study area. Inorganic constituents with health-based benchmarks that were frequently detected at high relative-concentrations included vanadium (V), arsenic (As), and boron (B). Vanadium and As concentrations were not significantly correlated to either urban or agricultural land use indicating natural sources as the primary contributors of these constituents to groundwater. The positive correlation of B concentration to urban land-use was significant which indicates that anthropogenic activities are a contributing source of B to groundwater. The correlation of V, As and B concentrations to pH was positive, indicating that in alkaline groundwater these constituents are being desorbed from, or being inhibited from adsorbing to, particle surfaces.  Inorganic constituents with aesthetic benchmarks that were detected at high relative-concentrations include manganese (Mn), iron (Fe), and total dissolved solids (TDS). In the Alluvial Fill study areas, Mn and TDS were detected at high relative-concentrations in 13.7 percent of the primary aquifers, and Fe in 6.9 percent. In the Hard Rock study area, Mn was detected at high relative-concentrations in 33.3 percent of the primary aquifers, and TDS in 16.7 percent; Fe was not detected at high relative-concentrations. Total dissolved solids concentrations were significantly correlated to agricultural land use suggesting that agricultural practices are a contributing source of TDS to groundwater. Manganese and Fe concentrations were highest in groundwater with low dissolved oxygen and pH indicating that the reductive dissolution of oxyhydroxides may be an important mechanism for the mobilization of Mn and Fe in groundwater. TDS concentrations were highest in shallow wells and in modern (< 50 yrs) groundwater which indicates anthropogenic activities as a source of TDS concentrations in groundwater.  The relative-concentrations of organic constituents with health-based benchmarks were high in 3.0 percent of the primary aquifers in the Alluvial Fill study areas. A single detection in the Alluvial Basins study area of the discontinued gasoline oxygenate methyl tert-butyl ether (MTBE) was the only organic constituent detected at a high relative-concentration; high relative-concentrations of these constituents were not detected in the Hard Rock study area. Twelve of 88 VOCs and 14 of 123 pesticides and pesticide degradates analyzed in grid wells were detected. Chloroform was the only VOC detected in more than 10 percent of the grid wells. The herbicides simazine, atrazine, and prometon were each detected in greater than 10 percent of the grid wells. Perchlorate was detected in 22 percent of the grid wells sampled.  The understanding assessment showed a significant correlation of trihalomethanes (THMs) and solvents to urban land-use, indicating that detections of these constituents are more likely to occur in groundwater underlying urbanized areas of the study unit. MTBE concentrations were negatively correlated to the distance from the nearest leaking underground fuel tank, indicating that point sources are the most significant contributing factor for MTBE concentrations to groundwater in the study unit. The positive correlation of THM and herbicide concentrations to modern groundwater was significant, as was the negative correlation of herbicide concentrations to pH and anoxic groundwater. The negative correlation of herbicides to pH and anoxic groundwater was likely due to the fact that these constituents were detected more frequently in shallow wells where groundwater conditions tend to be oxic with relatively low pH.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115154","collaboration":"A product of the California Groundwater Ambient Monitoring and Assessment (GAMA) Program, prepared in cooperation with the California State Water Resources Control Board","usgsCitation":"Wright, M.T., and Belitz, K., 2011, Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project: U.S. Geological Survey Scientific Investigations Report 2011-5154, x, 71 p.; Appendices, https://doi.org/10.3133/sir20115154.","productDescription":"x, 71 p.; Appendices","temporalStart":"2004-05-01","temporalEnd":"2004-07-31","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":116784,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5154.jpg"},{"id":112133,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5154/","linkFileType":{"id":5,"text":"html"}}],"projection":"Albers Equal Area Conic Projection","country":"United States","state":"California","county":"Orange;Riverside;And San Diego","city":"San Diego","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -125,32 ], [ -125,42 ], [ -114,42 ], [ -114,32 ], [ -125,32 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505b979be4b08c986b31bb70","contributors":{"authors":[{"text":"Wright, Michael T. 0000-0003-0653-6466 mtwright@usgs.gov","orcid":"https://orcid.org/0000-0003-0653-6466","contributorId":1508,"corporation":false,"usgs":true,"family":"Wright","given":"Michael","email":"mtwright@usgs.gov","middleInitial":"T.","affiliations":[],"preferred":false,"id":354249,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Belitz, Kenneth 0000-0003-4481-2345 kbelitz@usgs.gov","orcid":"https://orcid.org/0000-0003-4481-2345","contributorId":442,"corporation":false,"usgs":true,"family":"Belitz","given":"Kenneth","email":"kbelitz@usgs.gov","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true},{"id":503,"text":"Office of Water Quality","active":true,"usgs":true},{"id":27111,"text":"National Water Quality Program","active":true,"usgs":true},{"id":376,"text":"Massachusetts Water Science Center","active":true,"usgs":true},{"id":451,"text":"National Water Quality Assessment Program","active":true,"usgs":true}],"preferred":true,"id":354248,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70006216,"text":"70006216 - 2011 - Temporal variation in bird and resource abundance across an elevational gradient in Hawaii","interactions":[],"lastModifiedDate":"2018-01-04T12:55:10","indexId":"70006216","displayToPublicDate":"2011-12-18T15:56:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3544,"text":"The Auk","onlineIssn":"1938-4254","printIssn":"0004-8038","active":true,"publicationSubtype":{"id":10}},"title":"Temporal variation in bird and resource abundance across an elevational gradient in Hawaii","docAbstract":"<p>We documented patterns of nectar availability and nectarivorous bird abundance over ~3 years at nine study sites across an 1,800-m elevational gradient on Hawaii Island to investigate the relationship between resource variation and bird abundance. Flower density (flowers ha<sup>-1</sup>) and nectar energy content were measured across the gradient for the monodominant 'Ōhi'a (<i>Metrosideros polymorpha</i>). Four nectarivorous bird species were captured monthly in mist nets and surveyed quarterly with point-transect distance sampling at each site to examine patterns of density and relative abundance. Flowering peaks were associated with season but not rainfall or elevation. Bird densities peaked in the winter and spring of each year at high elevations, but patterns were less clear at middle and low elevations. Variability in bird abundance was generally best modeled as a function of elevation, season, and flower density, but the strength of the latter effect varied with species. The low elevations had the greatest density of flowers but contained far fewer individuals of the two most strongly nectarivorous species. There is little evidence of large-scale altitudinal movement of birds in response to 'Ōhi'a flowering peaks. The loose relationship between nectar and bird abundance may be explained by a number of potential mechanisms, including (1) demographic constraints to movement; (2) nonlimiting nectar resources; and (3) the presence of an \"ecological trap,\" whereby birds are attracted by the high resource abundance of, but suffer increased mortality at, middle and low elevations as a result of disease.</p>","language":"English","publisher":"American Ornithological Society","doi":"10.1525/auk.2011.10031","usgsCitation":"Hart, P., Woodworth, B., Camp, R., Turner, K., McClure, K., Goodall, K., Henneman, C., Spiegel, C., Lebrun, J., Tweed, E., and Samuel, M., 2011, Temporal variation in bird and resource abundance across an elevational gradient in Hawaii: The Auk, v. 128, no. 1, p. 113-126, https://doi.org/10.1525/auk.2011.10031.","productDescription":"14 p.","startPage":"113","endPage":"126","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-017757","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":474844,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1525/auk.2011.10031","text":"Publisher Index Page"},{"id":204427,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Hawai'i","otherGeospatial":"Hawaii Island","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -154.51171875,\n              19.766703551716976\n            ],\n            [\n              -156.29150390625,\n              21.53484700204879\n            ],\n            [\n              -157.8955078125,\n              22.248428704383624\n            ],\n            [\n              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J.","contributorId":79750,"corporation":false,"usgs":true,"family":"Hart","given":"Patrick J.","affiliations":[],"preferred":false,"id":354086,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Woodworth, Bethany L.","contributorId":66797,"corporation":false,"usgs":true,"family":"Woodworth","given":"Bethany L.","affiliations":[{"id":595,"text":"U.S. Geological Survey","active":false,"usgs":true}],"preferred":false,"id":354083,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Camp, Richard J.","contributorId":27392,"corporation":false,"usgs":true,"family":"Camp","given":"Richard J.","affiliations":[],"preferred":false,"id":354079,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Turner, Kathryn G.","contributorId":77426,"corporation":false,"usgs":true,"family":"Turner","given":"Kathryn","middleInitial":"G.","affiliations":[],"preferred":false,"id":354085,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"McClure, Katherine","contributorId":76602,"corporation":false,"usgs":true,"family":"McClure","given":"Katherine","affiliations":[],"preferred":false,"id":354084,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Goodall, Katherine","contributorId":85465,"corporation":false,"usgs":true,"family":"Goodall","given":"Katherine","email":"","affiliations":[],"preferred":false,"id":354087,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Henneman, Carlene","contributorId":63688,"corporation":false,"usgs":true,"family":"Henneman","given":"Carlene","email":"","affiliations":[],"preferred":false,"id":354082,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Spiegel, Caleb","contributorId":32044,"corporation":false,"usgs":true,"family":"Spiegel","given":"Caleb","affiliations":[],"preferred":false,"id":354080,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Lebrun, Jaymi","contributorId":17489,"corporation":false,"usgs":true,"family":"Lebrun","given":"Jaymi","affiliations":[],"preferred":false,"id":354077,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Tweed, Erik","contributorId":33181,"corporation":false,"usgs":true,"family":"Tweed","given":"Erik","email":"","affiliations":[],"preferred":false,"id":354081,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Samuel, Michael","contributorId":24238,"corporation":false,"usgs":true,"family":"Samuel","given":"Michael","affiliations":[],"preferred":false,"id":354078,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70006304,"text":"70006304 - 2011 - Oxidative dissolution of biogenic uraninite in groundwater at Old Rifle, CO","interactions":[],"lastModifiedDate":"2021-02-23T15:20:38.237833","indexId":"70006304","displayToPublicDate":"2011-12-18T12:56:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1565,"text":"Environmental Science & Technology","onlineIssn":"1520-5851","printIssn":"0013-936X","active":true,"publicationSubtype":{"id":10}},"title":"Oxidative dissolution of biogenic uraninite in groundwater at Old Rifle, CO","docAbstract":"Reductive bioremediation is currently being explored as a possible strategy for uranium-contaminated aquifers such as the Old Rifle site (Colorado). The stability of U(IV) phases under oxidizing conditions is key to the performance of this procedure. An in situ method was developed to study oxidative dissolution of biogenic uraninite (UO<sub>2</sub>), a desirable U(VI) bioreduction product, in the Old Rifle, CO, aquifer under different variable oxygen conditions. Overall uranium loss rates were 50&ndash;100 times slower than laboratory rates. After accounting for molecular diffusion through the sample holders, a reactive transport model using laboratory dissolution rates was able to predict overall uranium loss. The presence of biomass further retarded diffusion and oxidation rates. These results confirm the importance of diffusion in controlling in-aquifer U(IV) oxidation rates. Upon retrieval, uraninite was found to be free of U(VI), indicating dissolution occurred via oxidation and removal of surface atoms. Interaction of groundwater solutes such as Ca<sup>2+</sup> or silicate with uraninite surfaces also may retard in-aquifer U loss rates. These results indicate that the prolonged stability of U(IV) species in aquifers is strongly influenced by permeability, the presence of bacterial cells and cell exudates, and groundwater geochemistry.","language":"English","publisher":"ACS Publications","publisherLocation":"Washington, D.C.","doi":"10.1021/es200482f","usgsCitation":"Campbell, K.M., Veeramani, H., Ulrich, K., Blue, L.Y., Giammar, D.E., Bernier-Latmani, R., Stubbs, J.E., Suvorova, E., Yabusaki, S., Lezama-Pacheco, J.S., Mehta, A., Long, P.E., and Bargar, J.R., 2011, Oxidative dissolution of biogenic uraninite in groundwater at Old Rifle, CO: Environmental Science & Technology, v. 45, no. 20, p. 8748-8754, https://doi.org/10.1021/es200482f.","productDescription":"7 p.","startPage":"8748","endPage":"8754","numberOfPages":"6","costCenters":[{"id":145,"text":"Branch of Regional Research-Central Region","active":false,"usgs":true}],"links":[{"id":474850,"rank":1,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://infoscience.epfl.ch/record/169683","text":"External Repository"},{"id":204533,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Colorado","otherGeospatial":"Old Rifle Site","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -108.05259704589842,\n              39.36137794996196\n            ],\n            [\n              -107.49229431152342,\n              39.36137794996196\n            ],\n            [\n              -107.49229431152342,\n              39.68076911511416\n            ],\n            [\n              -108.05259704589842,\n              39.68076911511416\n            ],\n            [\n              -108.05259704589842,\n              39.36137794996196\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"45","issue":"20","noUsgsAuthors":false,"publicationDate":"2011-09-27","publicationStatus":"PW","scienceBaseUri":"505a726ce4b0c8380cd76abc","contributors":{"authors":[{"text":"Campbell, Kate M. 0000-0002-8715-5544 kcampbell@usgs.gov","orcid":"https://orcid.org/0000-0002-8715-5544","contributorId":1441,"corporation":false,"usgs":true,"family":"Campbell","given":"Kate","email":"kcampbell@usgs.gov","middleInitial":"M.","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":354260,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Veeramani, Harish","contributorId":7572,"corporation":false,"usgs":true,"family":"Veeramani","given":"Harish","email":"","affiliations":[],"preferred":false,"id":354262,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ulrich, Kai-Uwe","contributorId":10682,"corporation":false,"usgs":true,"family":"Ulrich","given":"Kai-Uwe","email":"","affiliations":[],"preferred":false,"id":354263,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Blue, Lisa Y.","contributorId":64110,"corporation":false,"usgs":true,"family":"Blue","given":"Lisa","email":"","middleInitial":"Y.","affiliations":[],"preferred":false,"id":354267,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Giammar, Dianiel E.","contributorId":63689,"corporation":false,"usgs":true,"family":"Giammar","given":"Dianiel","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":354266,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Bernier-Latmani, Rizlan","contributorId":68605,"corporation":false,"usgs":true,"family":"Bernier-Latmani","given":"Rizlan","affiliations":[],"preferred":false,"id":354268,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Stubbs, Joanne E.","contributorId":45189,"corporation":false,"usgs":true,"family":"Stubbs","given":"Joanne","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":354265,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Suvorova, Elena","contributorId":80149,"corporation":false,"usgs":true,"family":"Suvorova","given":"Elena","affiliations":[],"preferred":false,"id":354269,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Yabusaki, Steve","contributorId":102753,"corporation":false,"usgs":true,"family":"Yabusaki","given":"Steve","affiliations":[],"preferred":false,"id":354272,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Lezama-Pacheco, Juan S.","contributorId":90179,"corporation":false,"usgs":true,"family":"Lezama-Pacheco","given":"Juan","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":354270,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Mehta, Apurva","contributorId":99438,"corporation":false,"usgs":true,"family":"Mehta","given":"Apurva","email":"","affiliations":[],"preferred":false,"id":354271,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Long, Philip E.","contributorId":7143,"corporation":false,"usgs":true,"family":"Long","given":"Philip","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":354261,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Bargar, John R.","contributorId":14970,"corporation":false,"usgs":true,"family":"Bargar","given":"John","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":354264,"contributorType":{"id":1,"text":"Authors"},"rank":13}]}}
,{"id":70006337,"text":"70006337 - 2011 - Nitrate in the Mississippi River and its tributaries, 1980 to 2008: Are we making progress?","interactions":[],"lastModifiedDate":"2021-02-23T15:49:19.198162","indexId":"70006337","displayToPublicDate":"2011-12-18T12:45:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1565,"text":"Environmental Science & Technology","onlineIssn":"1520-5851","printIssn":"0013-936X","active":true,"publicationSubtype":{"id":10}},"title":"Nitrate in the Mississippi River and its tributaries, 1980 to 2008: Are we making progress?","docAbstract":"<p><span>Changes in nitrate concentration and flux between 1980 and 2008 at eight sites in the Mississippi River basin were determined using a new statistical method that accommodates evolving nitrate behavior over time and produces flow-normalized estimates of nitrate concentration and flux that are independent of random variations in streamflow. The results show that little consistent progress has been made in reducing riverine nitrate since 1980, and that flow-normalized concentration and flux are increasing in some areas. Flow-normalized nitrate concentration and flux increased between 9 and 76% at four sites on the Mississippi River and a tributary site on the Missouri River, but changed very little at tributary sites on the Ohio, Iowa, and Illinois Rivers. Increases in flow-normalized concentration and flux at the Mississippi River at Clinton and Missouri River at Hermann were more than three times larger than at any other site. The increases at these two sites contributed much of the 9% increase in flow-normalized nitrate flux leaving the Mississippi River basin. At most sites, concentrations increased more at low and moderate streamflows than at high streamflows, suggesting that increasing groundwater concentrations are having an effect on river concentrations.</span></p>","language":"English","publisher":"ACS Publications","publisherLocation":"Washington, D.C.","doi":"10.1021/es201221s","usgsCitation":"Sprague, L.A., Hirsch, R.M., and Aulenbach, B.T., 2011, Nitrate in the Mississippi River and its tributaries, 1980 to 2008: Are we making progress?: Environmental Science & Technology, v. 45, no. 17, p. 7209-7216, https://doi.org/10.1021/es201221s.","productDescription":"8 p.","startPage":"7209","endPage":"7216","temporalStart":"1980-01-01","temporalEnd":"2008-12-31","costCenters":[{"id":191,"text":"Colorado Water Science Center","active":true,"usgs":true}],"links":[{"id":474851,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1021/es201221s","text":"Publisher Index Page"},{"id":204532,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Illinois, Iowa, Louisiana, Missouri","otherGeospatial":"Mississippi River Basin","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -91.702880859375,\n              38.16911413556086\n            ],\n            [\n              -89.8681640625,\n              38.16911413556086\n            ],\n            [\n              -89.8681640625,\n              42.439674178149424\n            ],\n            [\n              -91.702880859375,\n              42.439674178149424\n            ],\n            [\n              -91.702880859375,\n              38.16911413556086\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -90.703125,\n              37.19533058280065\n            ],\n            [\n              -89.07714843749999,\n              37.19533058280065\n            ],\n            [\n              -89.07714843749999,\n              38.22091976683121\n            ],\n            [\n              -90.703125,\n              38.22091976683121\n            ],\n            [\n              -90.703125,\n              37.19533058280065\n            ]\n          ]\n        ]\n      }\n    },\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -91.8072509765625,\n              30.56462594065098\n            ],\n            [\n              -91.27853393554688,\n              30.56462594065098\n            ],\n            [\n              -91.27853393554688,\n              30.96936682219671\n            ],\n            [\n              -91.8072509765625,\n              30.96936682219671\n            ],\n            [\n              -91.8072509765625,\n              30.56462594065098\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"45","issue":"17","noUsgsAuthors":false,"publicationDate":"2011-08-09","publicationStatus":"PW","scienceBaseUri":"505a66ace4b0c8380cd72ef6","contributors":{"authors":[{"text":"Sprague, Lori A. 0000-0003-2832-6662 lsprague@usgs.gov","orcid":"https://orcid.org/0000-0003-2832-6662","contributorId":726,"corporation":false,"usgs":true,"family":"Sprague","given":"Lori","email":"lsprague@usgs.gov","middleInitial":"A.","affiliations":[{"id":451,"text":"National Water Quality Assessment Program","active":true,"usgs":true},{"id":27111,"text":"National Water Quality Program","active":true,"usgs":true},{"id":509,"text":"Office of the Associate Director for Water","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":354322,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hirsch, Robert M. 0000-0002-4534-075X rhirsch@usgs.gov","orcid":"https://orcid.org/0000-0002-4534-075X","contributorId":2005,"corporation":false,"usgs":true,"family":"Hirsch","given":"Robert","email":"rhirsch@usgs.gov","middleInitial":"M.","affiliations":[{"id":37316,"text":"WMA - Integrated Information Dissemination Division","active":true,"usgs":true},{"id":502,"text":"Office of Surface Water","active":true,"usgs":true},{"id":37778,"text":"WMA - Integrated Modeling and Prediction Division","active":true,"usgs":true},{"id":436,"text":"National Research Program - Eastern Branch","active":true,"usgs":true}],"preferred":true,"id":354323,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Aulenbach, Brent T. 0000-0003-2863-1288 btaulenb@usgs.gov","orcid":"https://orcid.org/0000-0003-2863-1288","contributorId":3057,"corporation":false,"usgs":true,"family":"Aulenbach","given":"Brent","email":"btaulenb@usgs.gov","middleInitial":"T.","affiliations":[{"id":316,"text":"Georgia Water Science Center","active":true,"usgs":true},{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354324,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70004512,"text":"70004512 - 2011 - Testing coral-based tropical cyclone reconstructions: An example from Puerto Rico","interactions":[],"lastModifiedDate":"2013-02-19T16:11:47","indexId":"70004512","displayToPublicDate":"2011-12-18T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2996,"text":"Palaeogeography, Palaeoclimatology, Palaeoecology","printIssn":"0031-0182","active":true,"publicationSubtype":{"id":10}},"title":"Testing coral-based tropical cyclone reconstructions: An example from Puerto Rico","docAbstract":"Complimenting modern records of tropical cyclone activity with longer historical and paleoclimatological records would increase our understanding of natural tropical cyclone variability on decadal to centennial time scales. Tropical cyclones produce large amounts of precipitation with significantly lower &delta;<sup>18</sup>O values than normal precipitation, and hence may be geochemically identifiable as negative &delta;<sup>18</sup>O anomalies in marine carbonate &delta;<sup>18</sup>O records. This study investigates the usefulness of coral skeletal &delta;<sup>18</sup>O as a means of reconstructing past tropical cyclone events. Isotopic modeling of rainfall mixing with seawater shows that detecting an isotopic signal from a tropical cyclone in a coral requires a salinity of ~ 33 psu at the time of coral growth, but this threshold is dependent on the isotopic composition of both fresh and saline end-members. A comparison between coral &delta;<sup>18</sup>O and historical records of tropical cyclone activity, river discharge, and precipitation from multiple sites in Puerto Rico shows that tropical cyclones are not distinguishable in the coral record from normal rainfall using this approach at these sites.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Palaeogeography, Palaeoclimatology, Palaeoecology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Elsevier","publisherLocation":"Amsterdam, Netherlands","doi":"10.1016/j.palaeo.2011.04.027","usgsCitation":"Kilbourne, K.H., Moyer, R.P., Quinn, T.M., and Grottoli, A.G., 2011, Testing coral-based tropical cyclone reconstructions: An example from Puerto Rico: Palaeogeography, Palaeoclimatology, Palaeoecology, v. 307, no. 1-4, p. 90-97, https://doi.org/10.1016/j.palaeo.2011.04.027.","productDescription":"8 p.","startPage":"90","endPage":"97","numberOfPages":"8","costCenters":[{"id":574,"text":"St. Petersburg Coastal and Marine Science Center","active":true,"usgs":true}],"links":[{"id":267779,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.palaeo.2011.04.027"},{"id":204289,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Puerto Rico","volume":"307","issue":"1-4","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505ba5c1e4b08c986b320c5e","contributors":{"authors":[{"text":"Kilbourne, K. Halimeda","contributorId":100696,"corporation":false,"usgs":true,"family":"Kilbourne","given":"K.","email":"","middleInitial":"Halimeda","affiliations":[],"preferred":false,"id":350536,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Moyer, Ryan P.","contributorId":94551,"corporation":false,"usgs":true,"family":"Moyer","given":"Ryan","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":350535,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Quinn, Terrence M.","contributorId":82949,"corporation":false,"usgs":false,"family":"Quinn","given":"Terrence","email":"","middleInitial":"M.","affiliations":[{"id":6732,"text":"Geological Sciences, University of Texas at Austin","active":true,"usgs":false}],"preferred":false,"id":350534,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Grottoli, Andrea G.","contributorId":31632,"corporation":false,"usgs":true,"family":"Grottoli","given":"Andrea","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":350533,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70006262,"text":"sir20115087 - 2011 - Groundwater conditions in the Brunswick-Glynn County area, Georgia, 2009","interactions":[],"lastModifiedDate":"2017-01-17T11:16:34","indexId":"sir20115087","displayToPublicDate":"2011-12-16T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5087","title":"Groundwater conditions in the Brunswick-Glynn County area, Georgia, 2009","docAbstract":"The Upper Floridan aquifer is contaminated with saltwater in a 2-square-mile area of downtown Brunswick, Georgia. The presence of this saltwater has limited the development of the groundwater supply in the Glynn County area. Hydrologic, geologic, and water-quality data are needed to effectively manage water resources. Since 1959, the U.S. Geological Survey (USGS) has conducted a cooperative water program with the City of Brunswick and Glynn County to monitor and assess the effect of groundwater development on saltwater intrusion within the Floridan aquifer system. The potential development of alternative sources of water in the Brunswick and surficial aquifer systems also is an important consideration in coastal areas.\nDuring calendar year 2009, the cooperative water program included continuous water-level recording of 13 wells completed in the Floridan, Brunswick, and surficial aquifer systems; collecting water levels from 46 wells to map the potentiometric surface of the Upper Floridan aquifer in Glynn County during August 2009; and collecting and analyzing water samples from 55 wells completed in the Floridan aquifer system, of which 27 wells were used to map chloride concentrations in the upper water-bearing zone of the Upper Floridan aquifer in the Brunswick area during August 2009. Periodic water-level measurements also were collected from two wells completed in the Upper Floridan aquifer and four wells completed in the Brunswick aquifer system on Jekyll Island. Equipment was installed on one well to enable real-time specific conductance monitoring in the area surrounding the chloride plume.\nDuring 2008-2009, water levels in 30 of the 32 wells monitored in the Brunswick-Glynn County area rose at a rate of 0.24 to 7.58 feet per year (ft/yr). The largest rise of 7.58 ft/yr was in the Upper Floridan aquifer. These rises corresponded to a period of above normal precipitation and decreased pumping. Declines during 2008-2009 were recorded in wells completed in the Brunswick aquifer system (0.37 ft/yr) and Lower Floridan aquifer (0.83 ft/yr).\nChloride data collected by two local industrial groundwater users at their well fields since 1958 were compiled and compared with data collected by the USGS during the same period. The results indicate that chloride concentrations at the two well fields have continued to rise despite modification of production wells to eliminate deep saline zones and decreases in pumpage at both facilities. One of the industrial users, Pinova Inc., plugged the lower portions of nine production wells in the mid to late 1960s, which generally decreased chloride concentrations to less than 100 milligrams per liter (mg/L) for a period of 10 to 20 years. However, chloride concentrations eventually returned to previous levels despite decreases in pumpage. During 1990-2009, chloride concentrations at the other industrial user's well field (Georgia-Pacific Cellulose LLC) generally increased despite a 16 million gallon per day decrease in pumpage during this period. Data from the Georgia-Pacific Cellulose well field and additional chloride data from USGS observation wells located to the east indicate continued movement of chloride from the source area located southeast of the site toward the well field.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115087","usgsCitation":"Cherry, G.S., Peck, M., Painter, J.A., and Stayton, W.L., 2011, Groundwater conditions in the Brunswick-Glynn County area, Georgia, 2009: U.S. Geological Survey Scientific Investigations Report 2011-5087, viii, 56 p.; Appendix, https://doi.org/10.3133/sir20115087.","productDescription":"viii, 56 p.; Appendix","costCenters":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"links":[{"id":116834,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5087.jpg"},{"id":112043,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5087/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Georgia","county":"Glynn County","city":"Brunswick","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -84,30 ], [ -84,34 ], [ -80,34 ], [ -80,30 ], [ -84,30 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a2d98e4b0c8380cd5bf45","contributors":{"authors":[{"text":"Cherry, Gregory S. 0000-0002-5567-1587 gccherry@usgs.gov","orcid":"https://orcid.org/0000-0002-5567-1587","contributorId":1567,"corporation":false,"usgs":true,"family":"Cherry","given":"Gregory","email":"gccherry@usgs.gov","middleInitial":"S.","affiliations":[{"id":316,"text":"Georgia Water Science Center","active":true,"usgs":true},{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354174,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Peck, Michael F. mfpeck@usgs.gov","contributorId":1467,"corporation":false,"usgs":true,"family":"Peck","given":"Michael F.","email":"mfpeck@usgs.gov","affiliations":[],"preferred":false,"id":354173,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Painter, Jaime A. 0000-0001-8883-9158 jpainter@usgs.gov","orcid":"https://orcid.org/0000-0001-8883-9158","contributorId":1466,"corporation":false,"usgs":true,"family":"Painter","given":"Jaime","email":"jpainter@usgs.gov","middleInitial":"A.","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true},{"id":316,"text":"Georgia Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354172,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stayton, Welby L.","contributorId":19573,"corporation":false,"usgs":true,"family":"Stayton","given":"Welby","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":354175,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70006269,"text":"ofr20111021 - 2011 - A survey of U.S. Fish and Wildlife Service employees regarding topics for distance education-Summary report to respondents","interactions":[],"lastModifiedDate":"2012-02-02T00:16:02","indexId":"ofr20111021","displayToPublicDate":"2011-12-16T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-1021","title":"A survey of U.S. Fish and Wildlife Service employees regarding topics for distance education-Summary report to respondents","docAbstract":"This report provides a summary of responses to the questions included in the U.S. Fish and Wildlife Service (FWS) National Conservation Training Center (NCTC) Distance Education survey conducted from January 26, 2010, to February 8, 2010. The survey included questions for two studies sponsored by the Division of Education Outreach (DEO) at the NCTC. The first study identifies the topics of interest to FWS employees on which training could be provided via distance education. The topics were limited to the area of conservation and environmental education, outreach, and partnerships because these topics are within the scope of the DEO. The second study focused on characterizing the relation between onsite course enrollment at NCTC and distance education offerings. Because there were only a few questions on the survey for the second study and because the target populations were the same for both, the two surveys were combined.\nOur preliminary conclusion, based only on frequencies of responses and averages, is that our survey respondents appear to prefer traditional instructor-led training. However, they would still enroll in distance education courses. The distance education technologies of audio conferencing, computer-mediated training, and written resource provision are the technologies respondents reported being most familiar and accessible to them. For four of the five topic areas-creating and maintaining partnerships, technology, program planning and development, and outreach methods-the response frequencies and averages indicate that the topics were viewed as both relevant and important. Respondents were more neutral regarding the relevance and importance of the topic of evaluation methods. Respondents reported preferences for different types of information on different topics and also reported preferences in delivery mode of training for each topic area. Detailed results and conclusions will be included in the completion reports for the two studies.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20111021","usgsCitation":"Ratz, J., Shuster, R.M., and Marcy, A.M., 2011, A survey of U.S. Fish and Wildlife Service employees regarding topics for distance education-Summary report to respondents: U.S. Geological Survey Open-File Report 2011-1021, iii, 38 p., https://doi.org/10.3133/ofr20111021.","productDescription":"iii, 38 p.","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"links":[{"id":116857,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2011_1021.png"},{"id":112048,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2011/1021/","linkFileType":{"id":5,"text":"html"}}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5059e5dbe4b0c8380cd46fd5","contributors":{"authors":[{"text":"Ratz, Joan M.","contributorId":22739,"corporation":false,"usgs":true,"family":"Ratz","given":"Joan M.","affiliations":[],"preferred":false,"id":354187,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Shuster, Rudy M.","contributorId":49097,"corporation":false,"usgs":true,"family":"Shuster","given":"Rudy","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":354189,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Marcy, Ann M.","contributorId":37464,"corporation":false,"usgs":true,"family":"Marcy","given":"Ann","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":354188,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70006255,"text":"sir20115217 - 2011 - Water-quality conditions near the confluence of the Snake and Boise Rivers, Canyon County, Idaho","interactions":[],"lastModifiedDate":"2012-03-08T17:16:42","indexId":"sir20115217","displayToPublicDate":"2011-12-16T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5217","title":"Water-quality conditions near the confluence of the Snake and Boise Rivers, Canyon County, Idaho","docAbstract":"<p>Total Maximum Daily Loads (TMDLs) have been established under authority of the Federal Clean Water Act for the Snake River-Hells Canyon reach, on the border of Idaho and Oregon, to improve water quality and preserve beneficial uses such as public consumption, recreation, and aquatic habitat. The TMDL sets targets for seasonal average and annual maximum concentrations of chlorophyll-<i>a</i> at 14 and 30 micrograms per liter, respectively. To attain these conditions, the maximum total phosphorus concentration at the mouth of the Boise River in Idaho, a tributary to the Snake River, has been set at 0.07 milligrams per liter. However, interactions among chlorophyll-<i>a</i>, nutrients, and other key water-quality parameters that may affect beneficial uses in the Snake and Boise Rivers are unknown. In addition, contributions of nutrients and chlorophyll-<i>a</i> loads from the Boise River to the Snake River have not been fully characterized.</p> <p>To evaluate seasonal trends and relations among nutrients and other water-quality parameters in the Boise and Snake Rivers, a comprehensive monitoring program was conducted near their confluence in water years (WY) 2009 and 2010. The study also provided information on the relative contribution of nutrient and sediment loads from the Boise River to the Snake River, which has an effect on water-quality conditions in downstream reservoirs. State and site-specific water-quality standards, in addition to those that relate to the Snake River-Hells Canyon TMDL, have been established to protect beneficial uses in both rivers. Measured water-quality conditions in WY2009 and WY2010 exceeded these targets at one or more sites for the following constituents: water temperature, total phosphorus concentrations, total phosphorus loads, dissolved oxygen concentration, pH, and chlorophyll-<i>a</i> concentrations (WY2009 only). All measured total phosphorus concentrations in the Boise River near Parma exceeded the seasonal target of 0.07 milligram per liter. Data collected during the study show seasonal differences in all measured parameters. In particular, surprisingly high concentrations of chlorophyll-<i>a</i> were measured at all three main study sites in winter and early spring, likely due to changes in algal populations. Discharge conditions and dissolved orthophosphorus concentrations are key drivers for chlorophyll-<i>a</i> on a seasonal and annual basis on the Snake River. Discharge conditions and upstream periphyton growth are most likely the key drivers for chlorophyll-<i>a</i> in the Boise River. Phytoplankton growth is not limited or driven by nutrient availability in the Boise River. Lower discharges and minimal substrate disturbance in WY2010 in comparison with WY2009 may have caused prolonged and increased periphyton and macrophyte growth and a reduced amount of sloughed algae in suspension in the summer of WY2010.</p> <p>Chlorophyll-<i>a</i> measured in samples commonly is used as an indicator of sestonic algae biomass, but chlorophyll-<i>a</i> concentrations and fluorescence may not be the most appropriate surrogates for algae growth, eutrophication, and associated effects on beneficial uses. Assessment of the effects of algae growth on beneficial uses should evaluate not only sestonic algae, but also benthic algae and macrophytes. Alternatively, continuous monitoring of dissolved oxygen detects the influence of aquatic plant respiration for all types of algae and macrophytes and is likely a more direct measure of effects on beneficial uses such as aquatic habitat.</p> <p>Most measured water-quality parameters in the Snake River were statistically different upstream and downstream of the confluence with the Boise River. Higher concentrations and loads were measured at the downstream site (Snake River at Nyssa) than the upstream site (Snake River near Adrian) for total phosphorus, dissolved orthophosphorus, total nitrogen, dissolved nitrite and nitrate, suspended sediment, and turbidity. Higher dissolved oxygen concentrations and pH were measured at the upstream site (Snake River near Adrian) than the downstream site (Snake River at Nyssa). Contributions from the Boise River measured at Parma do not constitute all of the increase in nutrient and sediment loads in the Snake River between the upstream and downstream sites.</p> <p>Surrogate models were developed using a combination of continuously monitored variables to estimate concentrations of nutrients and suspended sediment when samples were not possible. The surrogate models explained from 66 to 95 percent of the variability in nutrient and suspended sediment concentrations, depending on the site and model. Although the surrogate models could not always represent event-based changes in modeled parameters, they generally were successful in representing seasonal and annual patterns. Over a longer period, the surrogate models could be a useful tool for measuring compliance with state and site-specific water-quality standards and TMDL targets, for representing daily and seasonal variability in constituents, and for assessing effects of phosphorus reduction measures within the watershed.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115217","collaboration":"Prepared in cooperation with the Cities of Boise, Caldwell, Meridian, and Nampa","usgsCitation":"Wood, M.S., and Etheridge, A., 2011, Water-quality conditions near the confluence of the Snake and Boise Rivers, Canyon County, Idaho: U.S. Geological Survey Scientific Investigations Report 2011-5217, viii, 64 p.; Appendices; Appendix B Download, https://doi.org/10.3133/sir20115217.","productDescription":"viii, 64 p.; Appendices; Appendix B Download","startPage":"i","endPage":"70","numberOfPages":"78","temporalStart":"2008-10-01","temporalEnd":"2010-09-30","costCenters":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"links":[{"id":116833,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5217.jpg"},{"id":112031,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5217/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Idaho","county":"Canyon","otherGeospatial":"Snake River;Hells Canyon;Boise River","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -118,43.083333333333336 ], [ -118,45.75 ], [ -115.5,45.75 ], [ -115.5,43.083333333333336 ], [ -118,43.083333333333336 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505bcdece4b08c986b32e12c","contributors":{"authors":[{"text":"Wood, Molly S. 0000-0002-5184-8306 mswood@usgs.gov","orcid":"https://orcid.org/0000-0002-5184-8306","contributorId":788,"corporation":false,"usgs":true,"family":"Wood","given":"Molly","email":"mswood@usgs.gov","middleInitial":"S.","affiliations":[{"id":502,"text":"Office of Surface Water","active":true,"usgs":true},{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true},{"id":37786,"text":"WMA - Observing Systems Division","active":true,"usgs":true}],"preferred":true,"id":354160,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Etheridge, Alexandra 0000-0003-1282-7315","orcid":"https://orcid.org/0000-0003-1282-7315","contributorId":34251,"corporation":false,"usgs":true,"family":"Etheridge","given":"Alexandra","affiliations":[],"preferred":false,"id":354161,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70006268,"text":"ofr20111020 - 2011 - Summary of hydrologic testing of the Floridan aquifer system at Fort Stewart, Georgia","interactions":[],"lastModifiedDate":"2016-12-08T14:26:37","indexId":"ofr20111020","displayToPublicDate":"2011-12-16T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-1020","title":"Summary of hydrologic testing of the Floridan aquifer system at Fort Stewart, Georgia","docAbstract":"Two test wells were completed at Fort Stewart, GA, in January and February 2010 to investigate the potential of using the Lower Floridan aquifer as a source of water to satisfy anticipated increases in water use. One well was completed in the Lower Floridan aquifer at a depth of 1,255 feet below land surface; the other well was completed in the Upper Floridan aquifer at a depth of 560 feet below land surface. The U.S. Geological Survey conducted hydrologic testing at the well site including flowmeter surveys, slug tests within packer-isolated intervals of the Lower Floridan confining unit, and aquifer tests of the Upper and Lower Floridan aquifers.\nFlowmeter surveys at the study site indicate several permeable zones within the Floridan aquifer system. The Upper Floridan aquifer is composed of two water-bearing zones-the upper zone and the lower zone. The upper zone extends from 520 to 650 feet below land surface, contributes 96 percent of the total flow, and is more permeable than the lower zone, which extends from 650 to 705 feet below land surface and contributes the remaining 4 percent of the flow. The Lower Floridan aquifer consists of three zones at depths of 912-947, 1,090-1,139, and 1,211-1,250 feet below land surface that are inter-layered with three less-permeable zones. The Lower Floridan confining unit includes a permeable zone that extends from 793 to 822 feet below land surface. Horizontal hydraulic conductivity values of the Lower Floridan confining unit derived from slug tests within four packer-isolated intervals were from 2 to 20 feet per day, with a high value of 70 feet per day obtained for one of the intervals. Aquifer testing, using analytical techniques and model simulation, indicated the Upper Floridan aquifer had a transmissivity of about 100,000 feet squared per day, and the Lower Floridan aquifer had a transmissivity of 7,000 feet squared per day. Flowmeter surveys, slug tests within packer-isolated intervals, and parameter-estimation results indicate that the hydraulic properties of the Lower Floridan confining unit are similar to those of the Lower Floridan aquifer. Water-level data, for each aquifer test, were filtered for external influences such as barometric pressure, earth-tide effects, and long-term trends to enable detection of small water-level responses to aquifer-test pumping of less than 1 foot. During a 72-hour aquifer test of the Lower Floridan aquifer, a drawdown response of 0.3 to 0.4 foot was observed in two Upper Floridan aquifer wells, one of which was more than 1 mile away from the pumped well.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20111020","collaboration":"Prepared in cooperation with the U.S. Department of the Army","usgsCitation":"Gonthier, G., 2011, Summary of hydrologic testing of the Floridan aquifer system at Fort Stewart, Georgia: U.S. Geological Survey Open-File Report 2011-1020, viii, 28 p., https://doi.org/10.3133/ofr20111020.","productDescription":"viii, 28 p.","costCenters":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"links":[{"id":116848,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2011_1020.jpg"},{"id":112047,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2011/1020/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Georgia","otherGeospatial":"Floridan aquifer system","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -82,31.5 ], [ -82,32.333333333333336 ], [ -80.75,32.333333333333336 ], [ -80.75,31.5 ], [ -82,31.5 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505b9e8fe4b08c986b31dfa3","contributors":{"authors":[{"text":"Gonthier, Gerard  0000-0003-4078-8579 gonthier@usgs.gov","orcid":"https://orcid.org/0000-0003-4078-8579","contributorId":3141,"corporation":false,"usgs":true,"family":"Gonthier","given":"Gerard ","email":"gonthier@usgs.gov","affiliations":[{"id":13634,"text":"South Atlantic Water Science Center","active":true,"usgs":true}],"preferred":false,"id":354186,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70006261,"text":"sir20115190 - 2011 - TOPMODEL simulations of streamflow and depth to water table in Fishing Brook Watershed, New York, 2007-09","interactions":[],"lastModifiedDate":"2012-03-08T17:16:42","indexId":"sir20115190","displayToPublicDate":"2011-12-16T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5190","title":"TOPMODEL simulations of streamflow and depth to water table in Fishing Brook Watershed, New York, 2007-09","docAbstract":"TOPMODEL, a physically based, variable-source area rainfall-runoff model, was used to simulate streamflow and depth to water table for the period January 2007-September 2009 in the 65.6 square kilometers of Fishing Brook Watershed in northern New York. The Fishing Brook Watershed is located in the headwaters of the Hudson River and is predominantly forested with a humid, cool continental climate. The motivation for applying this model at Fishing Brook was to provide a simulation that would be effective later at this site in modeling the interaction of hydrologic processes with mercury dynamics.\nTOPMODEL uses a topographic wetness index computed from surface-elevation data to simulate streamflow and subsurface-saturation state, represented by the saturation deficit. Depth to water table was computed from simulated saturation-deficit values using computed soil properties. In the Fishing Brook Watershed, TOPMODEL was calibrated to the natural logarithm of streamflow at the study area outlet and depth to water table at Sixmile Wetland using a combined multiple-objective function. Runoff and depth to water table responded differently to some of the model parameters, and the combined multiple-objective function balanced the goodness-of-fit of the model realizations with respect to these parameters. Results show that TOPMODEL reasonably simulated runoff and depth to water table during the study period. The simulated runoff had a Nash-Sutcliffe efficiency of 0.738, but the model underpredicted total runoff by 14 percent. Depth to water table computed from simulated saturation-deficit values matched observed water-table depth moderately well; the root mean squared error of absolute depth to water table was 91 millimeters (mm), compared to the mean observed depth to water table of 205 mm. The correlation coefficient for temporal depth-to-water-table fluctuations was 0.624. The variability of the TOPMODEL simulations was assessed using prediction intervals grouped using the combined multiple-objective function. The calibrated TOPMODEL results for the entire study area were applied to several subwatersheds within the study area using computed hydrogeomorphic properties of the subwatersheds.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115190","collaboration":"National Water-Quality Assessment Program","usgsCitation":"Nystrom, E.A., and Burns, D.A., 2011, TOPMODEL simulations of streamflow and depth to water table in Fishing Brook Watershed, New York, 2007-09: U.S. Geological Survey Scientific Investigations Report 2011-5190, xii, 54 p., https://doi.org/10.3133/sir20115190.","productDescription":"xii, 54 p.","temporalStart":"2007-01-01","temporalEnd":"2009-12-31","costCenters":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"links":[{"id":116837,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5190.gif"},{"id":112041,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5190/","linkFileType":{"id":5,"text":"html"}}],"state":"New York","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -74.4,43.93333333333333 ], [ -74.4,44.03333333333333 ], [ -74.25,44.03333333333333 ], [ -74.25,43.93333333333333 ], [ -74.4,43.93333333333333 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505ba38ee4b08c986b31fd60","contributors":{"authors":[{"text":"Nystrom, Elizabeth A. 0000-0002-0886-3439 nystrom@usgs.gov","orcid":"https://orcid.org/0000-0002-0886-3439","contributorId":1072,"corporation":false,"usgs":true,"family":"Nystrom","given":"Elizabeth","email":"nystrom@usgs.gov","middleInitial":"A.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354170,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Burns, Douglas A. 0000-0001-6516-2869 daburns@usgs.gov","orcid":"https://orcid.org/0000-0001-6516-2869","contributorId":1237,"corporation":false,"usgs":true,"family":"Burns","given":"Douglas","email":"daburns@usgs.gov","middleInitial":"A.","affiliations":[{"id":474,"text":"New York Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354171,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70006277,"text":"ofr20111287 - 2011 - Gravity data from the San Pedro River Basin, Cochise County, Arizona","interactions":[],"lastModifiedDate":"2012-02-10T00:12:00","indexId":"ofr20111287","displayToPublicDate":"2011-12-16T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-1287","title":"Gravity data from the San Pedro River Basin, Cochise County, Arizona","docAbstract":"The U.S. Geological Survey, Arizona Water Science Center in cooperation with the National Oceanic and Atmospheric Administration, National Geodetic Survey has collected relative and absolute gravity data at 321 stations in the San Pedro River Basin of southeastern Arizona since 2000. Data are of three types: observed gravity values and associated free-air, simple Bouguer, and complete Bouguer anomaly values, useful for subsurface-density modeling; high-precision relative-gravity surveys repeated over time, useful for aquifer-storage-change monitoring; and absolute-gravity values, useful as base stations for relative-gravity surveys and for monitoring gravity change over time. The data are compiled, without interpretation, in three spreadsheet files. Gravity values, GPS locations, and driving directions for absolute-gravity base stations are presented as National Geodetic Survey site descriptions.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20111287","usgsCitation":"Kennedy, J.R., and Winester, D., 2011, Gravity data from the San Pedro River Basin, Cochise County, Arizona: U.S. Geological Survey Open-File Report 2011-1287, iv, 11 p.; Appendixes folder download, https://doi.org/10.3133/ofr20111287.","productDescription":"iv, 11 p.; Appendixes folder download","onlineOnly":"Y","additionalOnlineFiles":"Y","costCenters":[{"id":128,"text":"Arizona Water Science Center","active":true,"usgs":true}],"links":[{"id":116851,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2011_1287.gif"},{"id":112056,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2011/1287/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Arizona","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -110.75,31.25 ], [ -110.75,32.25 ], [ -109.75,32.25 ], [ -109.75,31.25 ], [ -110.75,31.25 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a2a18e4b0c8380cd5aea9","contributors":{"authors":[{"text":"Kennedy, Jeffrey R. 0000-0002-3365-6589 jkennedy@usgs.gov","orcid":"https://orcid.org/0000-0002-3365-6589","contributorId":2172,"corporation":false,"usgs":true,"family":"Kennedy","given":"Jeffrey","email":"jkennedy@usgs.gov","middleInitial":"R.","affiliations":[{"id":128,"text":"Arizona Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354210,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Winester, Daniel","contributorId":37469,"corporation":false,"usgs":true,"family":"Winester","given":"Daniel","affiliations":[],"preferred":false,"id":354211,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70006250,"text":"sir20115137 - 2011 - Estimated hydrologic budgets of kettle-hole ponds in coastal aquifers of southeastern Massachusetts","interactions":[],"lastModifiedDate":"2018-05-17T13:34:02","indexId":"sir20115137","displayToPublicDate":"2011-12-15T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5137","title":"Estimated hydrologic budgets of kettle-hole ponds in coastal aquifers of southeastern Massachusetts","docAbstract":"Kettle-hole ponds in southeastern Massachusetts are in good hydraulic connection to an extensive coastal aquifer system that includes the Plymouth-Carver aquifer system on the mainland and aquifers underlying Cape Cod. The ponds receive water from, and contribute water to, the underlying glacial aquifer; ponds also receive water from precipitation and lose water to evaporation from the pond surface. Some ponds are connected to surface-water drainage systems and receive water from or contribute water to streams or adjacent wetlands. The Massachusetts Department of Environmental Protection currently (2011) is developing Total Maximum Daily Loads of phosphorus for the freshwater ponds in the region to maintain the health of pond ecosystems; the amounts and sources of water fluxes into and out of the ponds are important factors in determining the amount of phosphorus that can be assimilated into a pond. To assist in this effort, the U.S. Geological Survey used groundwater-flow models of the coastal aquifer system to estimate hydrologic budgets-including inflows and outflows from the aquifer system and adjacent streams and wetlands, and recharge from precipitation-for 425 ponds in southeastern Massachusetts.\nWater fluxes through the ponds are a function of several factors, including the size, shape, and bathymetry of the pond, orientation of the pond relative to the regional hydraulic gradient, and hydrologic setting relative to the proximity of groundwater divides and discharge boundaries. Total steady-state fluxes through the ponds range from more than 3,300,000 to less than 2,000 cubic feet per day. For ponds without surface-water inlets or outlets, groundwater inflow accounts for 98 to 3 percent of total inflow; conversely, recharge onto the pond surface accounts for the remainder of inflow (between 2 and 97 percent). All natural flows from these ponds are through recharge from the pond into the aquifer. In one pond, about 94 percent of the total outflow is removed for water supply. For ponds that are connected to surface-water drainages, most inflow and outflow are through streams. Ponds that receive water from streams receive most (58 to 89 percent) of their water from those streams. Ponds that are drained by streams lose between 5 and 100 percent of their water to those streams.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115137","collaboration":"Prepared in cooperation with the Massachusetts Department of Environmental Protection","usgsCitation":"Walter, D.A., and Masterson, J., 2011, Estimated hydrologic budgets of kettle-hole ponds in coastal aquifers of southeastern Massachusetts: U.S. Geological Survey Scientific Investigations Report 2011-5137, iv, 32 p.; Appendix, https://doi.org/10.3133/sir20115137.","productDescription":"iv, 32 p.; Appendix","costCenters":[{"id":376,"text":"Massachusetts Water Science Center","active":true,"usgs":true},{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"links":[{"id":112026,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5137/","linkFileType":{"id":5,"text":"html"}},{"id":116807,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5137.gif"}],"state":"Massachusetts","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -70.86749999999999,41.5 ], [ -70.86749999999999,42.1175 ], [ -69.86749999999999,42.1175 ], [ -69.86749999999999,41.5 ], [ -70.86749999999999,41.5 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a0a93e4b0c8380cd523ce","contributors":{"authors":[{"text":"Walter, Donald A. 0000-0003-0879-4477 dawalter@usgs.gov","orcid":"https://orcid.org/0000-0003-0879-4477","contributorId":1101,"corporation":false,"usgs":true,"family":"Walter","given":"Donald","email":"dawalter@usgs.gov","middleInitial":"A.","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354149,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Masterson, John P. 0000-0003-3202-4413 jpmaster@usgs.gov","orcid":"https://orcid.org/0000-0003-3202-4413","contributorId":1865,"corporation":false,"usgs":true,"family":"Masterson","given":"John P.","email":"jpmaster@usgs.gov","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"preferred":false,"id":354150,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}}
,{"id":70006254,"text":"sir20115193 - 2011 - Factors influencing riverine fish assemblages in Massachusetts","interactions":[],"lastModifiedDate":"2012-03-08T17:16:42","indexId":"sir20115193","displayToPublicDate":"2011-12-15T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-5193","title":"Factors influencing riverine fish assemblages in Massachusetts","docAbstract":"The U.S. Geological Survey, in cooperation with the Massachusetts Department of Conservation and Recreation, Massachusetts Department of Environmental Protection, and the Massachusetts Department of Fish and Game, conducted an investigation of fish assemblages in small- to medium-sized Massachusetts streams. The objective of this study was to determine relations between fish-assemblage characteristics and anthropogenic factors, including impervious cover and estimated flow alteration, relative to the effects of environmental factors, including physical-basin characteristics and land use. The results of this investigation supersede those of a preliminary analysis published in 2010. Fish data were obtained for 669 fish-sampling sites from the Massachusetts Division of Fisheries and Wildlife fish-community database. A review of the literature was used to select fish metrics - species richness, abundance of individual species, and abundances of species grouped on life history traits - responsive to flow alteration. The contributing areas to the fish-sampling sites were delineated and used with a geographic information system to determine a set of environmental and anthropogenic factors that were tested for use as explanatory variables in regression models. Reported and estimated withdrawals and return flows were used together with simulated unaltered streamflows to estimate altered streamflows and indicators of flow alteration for each fish-sampling site. Altered streamflows and indicators of flow alteration were calculated on the basis of methods developed in a previous U.S. Geological Survey study in which unaltered daily streamflows were simulated for a 44-year period (water years 1961-2004), and streamflow alterations were estimated by use of water-withdrawal and wastewater-return data previously reported to the State for the 2000-04 period and estimated domestic-well withdrawals and septic-system discharges.  A variable selection process, conducted using principal components analysis and Spearman rank correlation, was used to select a set of 15 non-redundant environmental and anthropogenic factors to test for use as explanatory variables in the regression analyses. Twenty-one fish species were used in a multivariate analysis of fish-assemblage patterns. Results of nonmetric multidimensional scaling and hierarchical cluster analysis were used to group fish species into fluvial and macrohabitat generalist habitat-use classes.  Two analytical techniques, quantile regression and generalized linear modeling, were applied to characterize the association between fish-response variables and environmental and anthropogenic explanatory variables. Quantile regression demonstrated that as percent impervious cover and an indicator of percent alteration of August median flow from groundwater withdrawals increase, the relative abundance and species richness of fluvial fish decrease. The quantile regression plots indicate that (1) as many as seven fluvial fish species are expected in streams with little flow alteration or impervious cover, (2) no more than four fluvial fish species are expected in streams where flow alterations from groundwater withdrawals exceed 50 percent of the August median flow or the percent area of impervious cover exceeds 15 percent, and (3) few fluvial fish remain at high rates of withdrawal (approaching 100 percent) or high rates of impervious cover (between 25 and 30 percent). Three generalized linear models (GLMs) were developed to quantify the response of fluvial fish to multiple environmental and anthropogenic variables. All variables in the GLM equations were demonstrated to be significant (p less than 0.05, with most less than 0.01). Variables in the fluvial-fish relative-abundance model were channel slope, estimated percent alteration of August median flow from groundwater withdrawals, percent wetland in a 240-meter buffer strip, and percent impervious cover. Variables in the fluvial-fish species-richness model were drainage area, channel slope, total undammed reach length, percent wetland in a 240-meter buffer strip, and percent impervious cover. Variables in the brook trout relativeabundance model were drainage area, percent open water, and percent impervious cover. The variability explained by the GLM models, as measured by the pseudo R2, ranged from 18.2 to 34.6, and correlations between observed and predicted values ranged from 0.50 to 0.60. Results of GLM models indicated that, keeping all other variables the same, a one-unit (1 percent) increase in the percent depletion of August median flow would result in a 0.9-percent decrease in the relative abundance (in counts per hour) of fluvial fish. The results of GLM models also indicated that a unit increase in impervious cover (1 percent) resulted in a 3.7-percent decrease in the relative abundance of fluvial fish, a 5.4-percent decrease in fluvial-fish species richness, and an 8.7-percent decrease in brook trout relative abundance.","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20115193","collaboration":"Prepared in cooperation with the Massachusetts Department of Conservation and Recreation, the Massachusetts Department of Environmental Protection, and the Massachusetts Department of Fish and Game","usgsCitation":"Armstrong, D.S., Richards, T.A., and Levin, S.B., 2011, Factors influencing riverine fish assemblages in Massachusetts: U.S. Geological Survey Scientific Investigations Report 2011-5193, ix, 59 p., https://doi.org/10.3133/sir20115193.","productDescription":"ix, 59 p.","temporalStart":"1998-01-01","temporalEnd":"2008-12-31","costCenters":[{"id":376,"text":"Massachusetts Water Science Center","active":true,"usgs":true}],"links":[{"id":116809,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/sir_2011_5193.gif"},{"id":112030,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/sir/2011/5193/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Massachusetts","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -73.5,41.166666666666664 ], [ -73.5,42.88333333333333 ], [ -69.95,42.88333333333333 ], [ -69.95,41.166666666666664 ], [ -73.5,41.166666666666664 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a0ecae4b0c8380cd53619","contributors":{"authors":[{"text":"Armstrong, David S. 0000-0003-1695-1233 darmstro@usgs.gov","orcid":"https://orcid.org/0000-0003-1695-1233","contributorId":1390,"corporation":false,"usgs":true,"family":"Armstrong","given":"David","email":"darmstro@usgs.gov","middleInitial":"S.","affiliations":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354157,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Richards, Todd A.","contributorId":52266,"corporation":false,"usgs":true,"family":"Richards","given":"Todd","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":354159,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Levin, Sara B. 0000-0002-2448-3129 slevin@usgs.gov","orcid":"https://orcid.org/0000-0002-2448-3129","contributorId":1870,"corporation":false,"usgs":true,"family":"Levin","given":"Sara","email":"slevin@usgs.gov","middleInitial":"B.","affiliations":[{"id":37947,"text":"Upper Midwest Water Science Center","active":true,"usgs":true}],"preferred":true,"id":354158,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70006238,"text":"ofr20111303 - 2011 - Derived crop management data for the LandCarbon Project","interactions":[],"lastModifiedDate":"2012-02-10T00:12:01","indexId":"ofr20111303","displayToPublicDate":"2011-12-14T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-1303","title":"Derived crop management data for the LandCarbon Project","docAbstract":"<p>The LandCarbon project is assessing potential carbon pools and greenhouse gas fluxes under various scenarios and land management regimes to provide information to support the formulation of policies governing climate change mitigation, adaptation and land management strategies. The project is unique in that spatially explicit maps of annual land cover and land-use change are created at the 250-meter pixel resolution. The project uses vast amounts of data as input to the models, including satellite, climate, land cover, soil, and land management data. Management data have been obtained from the U.S. Department of Agriculture (USDA) National Agricultural Statistics Service (NASS) and USDA Economic Research Service (ERS) that provides information regarding crop type, crop harvesting, manure, fertilizer, tillage, and cover crop (U.S. Department of Agriculture, 2011a, b, c). The LandCarbon team queried the USDA databases to pull historic crop-related management data relative to the needs of the project. The data obtained was in table form with the County or State Federal Information Processing Standard (FIPS) and the year as the primary and secondary keys. Future projections were generated for the A1B, A2, B1, and B2 Intergovernmental Panel on Climate Change (IPCC) Special Report on Emissions Scenarios (SRES) scenarios using the historic data values along with coefficients generated by the project. The PBL Netherlands Environmental Assessment Agency (PBL) Integrated Model to Assess the Global Environment (IMAGE) modeling framework (Integrated Model to Assess the Global Environment, 2006) was used to develop coefficients for each IPCC SRES scenario, which were applied to the historic management data to produce future land management practice projections.</p> <p>The LandCarbon project developed algorithms for deriving gridded data, using these tabular management data products as input. The derived gridded crop type, crop harvesting, manure, fertilizer, tillage, and cover crop products are used as input to the LandCarbon models to represent the historic and the future scenario management data.</p> <p>The overall algorithm to generate each of the gridded management products is based on the land cover and the derived crop type. For each year in the land cover dataset, the algorithm loops through each 250-meter pixel in the ecoregion. If the current pixel in the land cover dataset is an agriculture pixel, then the crop type is determined. Once the crop type is derived, then the crop harvest, manure, fertilizer, tillage, and cover crop values are derived independently for that crop type. The following is the overall algorithm used for the set of derived grids. The specific algorithm to generate each management dataset is discussed in the respective section for that dataset, along with special data handling and a description of the output product.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20111303","usgsCitation":"Schmidt, G., Liu, S., and Oeding, J., 2011, Derived crop management data for the LandCarbon Project: U.S. Geological Survey Open-File Report 2011-1303, iv, 12 p.; Appendix, https://doi.org/10.3133/ofr20111303.","productDescription":"iv, 12 p.; Appendix","startPage":"i","endPage":"15","numberOfPages":"19","onlineOnly":"Y","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":116696,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/ofr_2011_1303.jpg"},{"id":111134,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/of/2011/1303/","linkFileType":{"id":5,"text":"html"}}],"geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -104,35 ], [ -104,49 ], [ -89.5,49 ], [ -89.5,35 ], [ -104,35 ] ] ] } } ] }","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5059fedee4b0c8380cd4ef7e","contributors":{"authors":[{"text":"Schmidt, Gail 0000-0002-9684-8158","orcid":"https://orcid.org/0000-0002-9684-8158","contributorId":29086,"corporation":false,"usgs":true,"family":"Schmidt","given":"Gail","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":false,"id":354135,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Liu, Shu-Guang sliu@usgs.gov","contributorId":984,"corporation":false,"usgs":true,"family":"Liu","given":"Shu-Guang","email":"sliu@usgs.gov","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":false,"id":354133,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Oeding, Jennifer joeding@usgs.gov","contributorId":4070,"corporation":false,"usgs":true,"family":"Oeding","given":"Jennifer","email":"joeding@usgs.gov","affiliations":[],"preferred":true,"id":354134,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70006148,"text":"fs20113142 - 2011 - Assessing the vulnerability of public-supply wells to contamination&mdash;Edwards aquifer near San Antonio, Texas","interactions":[],"lastModifiedDate":"2016-08-11T09:14:38","indexId":"fs20113142","displayToPublicDate":"2011-12-13T00:00:00","publicationYear":"2011","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2011-3142","title":"Assessing the vulnerability of public-supply wells to contamination&mdash;Edwards aquifer near San Antonio, Texas","docAbstract":"<p>This fact sheet highlights findings from the vulnerability study of a public-supply well field in San Antonio, Texas. The well field consists of six production wells that tap the Edwards aquifer. Typically, one or two wells are pumped at a time, yielding an average total of 20-21 million gallons per day. Water samples were collected from public-supply wells in the well field and from monitoring wells installed along general directions of flow to the well field. Samples from the well field contained some constituents of concern for drinking-water quality, including nitrate; the pesticide compounds atrazine, deethylatrazine, and simazine; and the volatile organic compounds tetrachloroethene (also called perchloroethene, or PCE), chloroform, bromoform, and dibromochloromethane. These constituents were detected in untreated water at concentrations much less than established drinking-water standards, where such standards exist. Overall, the study findings point to four primary factors that affect the movement and fate of contaminants and the vulnerability of the public-supply well field in San Antonio, Texas: (1) groundwater age (how long ago water entered, or recharged, the aquifer), (2) fast pathways for flow of groundwater through features formed or enlarged by dissolution of bedrock, (3) recharge characteristics of the aquifer, and (4) natural geochemical processes within the aquifer. A computer-model simulation of groundwater flow and transport was used to estimate the traveltime (or age) of water particles entering public-supply well W4 in the well field. Modeled findings show that almost half of the water reaching the public-supply well is less than 2 years old. Such a large percentage of very young water indicates that (1) contaminants entering the aquifer may be transported rapidly to the well, (2) there is limited time for chemical reactions to occur in the aquifer that may attenuate contaminants, and (3) should recharge water become contaminated with pathogenic microorganisms (which have limited survival times in aquifers), the microorganisms may be able to persist to the well. Features formed or enlarged by dissolution of bedrock allow most of the water reaching the well field to travel rapidly from the recharge zone to the supply wells along fast pathways rather than through the aquifer matrix. Supporting evidence includes (1) geophysical logging and flowmeter measurements in public-supply well W4 and in nearby monitoring wells showing that most of the flow volume into and out of the wells occurs in three horizontal zones, thought to be dissolution-enlarged bedding planes; and (2) fluctuations in groundwater chemistry that can be correlated to individual precipitation events. Analysis of water samples collected from shallow, intermediate, and deep zones of the Edwards aquifer at public-supply well W4 and from nearby monitoring wells reveal that water in the vicinity of the selected well field is notably well mixed throughout the sampled thickness of the Edwards aquifer, showing little of the chemical variation with depth that is commonly seen in other aquifers. Contaminants were found at all depths, and they did not enter the well through a specific horizon. The well-mixed nature of the Edwards aquifer is caused by the recharge characteristics of the area combined with fast flow paths through karst features. Constituents of concern in the Edwards aquifer for the long-term sustainability of the groundwater resource include the nutrient nitrate and anthropogenic contaminants such as atrazine, PCE, and chloroform. A scenario of hypothetical contaminant loading in the aquifer recharge zone was evaluated by using results from groundwater-flow-model particle tracking to assess the response of the aquifer to potential contamination. Results indicate that the concentrations at public-supply well W4 would begin to respond to contaminant loading in the recharge zone within 1 year because of short traveltimes through fast flow paths. Within 10 years, contaminant concentrations in the public-supply well would be equal to 90 percent of the input concentration for a contaminant (such as nitrate) that does not degrade in the oxic conditions of the Edwards aquifer.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20113142","usgsCitation":"Jagucki, M.L., Musgrove, M., Lindgren, R.J., Fahlquist, L., and Eberts, S., 2011, Assessing the vulnerability of public-supply wells to contamination&mdash;Edwards aquifer near San Antonio, Texas: U.S. Geological Survey Fact Sheet 2011-3142, 6 p., https://doi.org/10.3133/fs20113142.","productDescription":"6 p.","onlineOnly":"N","additionalOnlineFiles":"N","costCenters":[{"id":513,"text":"Ohio Water Science Center","active":true,"usgs":true},{"id":583,"text":"Texas Water Science Center","active":true,"usgs":true}],"links":[{"id":116838,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/fs_2011-3142.gif"},{"id":111128,"rank":100,"type":{"id":15,"text":"Index Page"},"url":"https://pubs.usgs.gov/fs/2011/3142/","linkFileType":{"id":5,"text":"html"}}],"country":"United States","state":"Texas","county":"Bexar;Medina","city":"San Antonio","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -99.16694444444445,29.4 ], [ -99.16694444444445,29.666944444444447 ], [ -98.31777777777778,29.666944444444447 ], [ -98.31777777777778,29.4 ], [ -99.16694444444445,29.4 ] ] ] } } ] }","publicComments":"National Water-Quality Assessment, Transport of Anthropogenic and Natural Contaminants (TANC) to Public-Supply Wells","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5059edf2e4b0c8380cd49b1d","contributors":{"authors":[{"text":"Jagucki, Martha L. 0000-0003-3798-8393 mjagucki@usgs.gov","orcid":"https://orcid.org/0000-0003-3798-8393","contributorId":1794,"corporation":false,"usgs":true,"family":"Jagucki","given":"Martha","email":"mjagucki@usgs.gov","middleInitial":"L.","affiliations":[{"id":513,"text":"Ohio Water Science Center","active":true,"usgs":true}],"preferred":true,"id":353945,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Musgrove, MaryLynn","contributorId":34878,"corporation":false,"usgs":true,"family":"Musgrove","given":"MaryLynn","affiliations":[],"preferred":false,"id":353948,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Lindgren, Richard J. lindgren@usgs.gov","contributorId":1667,"corporation":false,"usgs":true,"family":"Lindgren","given":"Richard","email":"lindgren@usgs.gov","middleInitial":"J.","affiliations":[],"preferred":true,"id":353944,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Fahlquist, Lynne","contributorId":8810,"corporation":false,"usgs":true,"family":"Fahlquist","given":"Lynne","affiliations":[],"preferred":false,"id":353947,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Eberts, Sandra M. smeberts@usgs.gov","contributorId":2264,"corporation":false,"usgs":true,"family":"Eberts","given":"Sandra M.","email":"smeberts@usgs.gov","affiliations":[{"id":513,"text":"Ohio Water Science Center","active":true,"usgs":true}],"preferred":false,"id":353946,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
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