Goal and Objectives of the Compendium
\nThe goal of this compendium is to integrate profiles of on-going, individual, disparate efforts implementing the science of tagging, telemetry, and marking (TTM) into a compilation of experience to inform the development of fish population monitoring. This is accomplished by meeting the following objectives:
\n• Provide the region with information and peer reviewed analyses to facilitate optimization of the use of TTM technology and designs in a comparable and consistent manner.
\n• Provide findings that are organized, peer reviewed, and communicated widely.
\n• Increase the opportunity for data collection to provide more reliable information and result in improved analyses and higher confidence in data analyses for making informed and more relevant decisions.
","largerWorkTitle":"Tagging, telemetry, and marking measures for monitoring fish populations: A compendium of new and recent science for use in informing technique and decision modalities","language":"English","publisher":"Pacific Northwest Aquatic Monitoring Partnership","publisherLocation":"Seattle, WA","usgsCitation":"Wolf, K.S., and Waste, S., 2010, Introduction: Tagging, telemetry, and marking compendium project: PNAMP Report Series 2010-002, 4 p.","productDescription":"4 p.","startPage":"1","endPage":"4","numberOfPages":"4","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-018295","costCenters":[{"id":654,"text":"Western Fisheries Research Center","active":true,"usgs":true}],"links":[{"id":307458,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"55dd91b9e4b0518e354dd196","contributors":{"authors":[{"text":"Wolf, Keith S.","contributorId":177730,"corporation":false,"usgs":false,"family":"Wolf","given":"Keith","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":516963,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Waste, Stephen M. swaste@usgs.gov","contributorId":3837,"corporation":false,"usgs":true,"family":"Waste","given":"Stephen M.","email":"swaste@usgs.gov","affiliations":[{"id":595,"text":"U.S. Geological Survey","active":false,"usgs":true}],"preferred":false,"id":569840,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}} ,{"id":70037567,"text":"70037567 - 2010 - Analysis of the Arctic system for freshwater cycle intensification: Observations and expectations","interactions":[],"lastModifiedDate":"2019-09-05T08:23:57","indexId":"70037567","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2216,"text":"Journal of Climate","active":true,"publicationSubtype":{"id":10}},"title":"Analysis of the Arctic system for freshwater cycle intensification: Observations and expectations","docAbstract":"Hydrologic cycle intensification is an expected manifestation of a warming climate. Although positive trends in several global average quantities have been reported, no previous studies have documented broad intensification across elements of the Arctic freshwater cycle (FWC). In this study, the authors examine the character and quantitative significance of changes in annual precipitation, evapotranspiration, and river discharge across the terrestrial pan-Arctic over the past several decades from observations and a suite of coupled general circulation models (GCMs). Trends in freshwater flux and storage derived from observations across the Arctic Ocean and surrounding seas are also described.\n\nWith few exceptions, precipitation, evapotranspiration, and river discharge fluxes from observations and the GCMs exhibit positive trends. Significant positive trends above the 90% confidence level, however, are not present for all of the observations. Greater confidence in the GCM trends arises through lower interannual variability relative to trend magnitude. Put another way, intrinsic variability in the observations tends to limit confidence in trend robustness. Ocean fluxes are less certain, primarily because of the lack of long-term observations. Where available, salinity and volume flux data suggest some decrease in saltwater inflow to the Barents Sea (i.e., a decrease in freshwater outflow) in recent decades. A decline in freshwater storage across the central Arctic Ocean and suggestions that large-scale circulation plays a dominant role in freshwater trends raise questions as to whether Arctic Ocean freshwater flows are intensifying. Although oceanic fluxes of freshwater are highly variable and consistent trends are difficult to verify, the other components of the Arctic FWC do show consistent positive trends over recent decades. The broad-scale increases provide evidence that the Arctic FWC is experiencing intensification. Efforts that aim to develop an adequate observation system are needed to reduce uncertainties and to detect and document ongoing changes in all system components for further evidence of Arctic FWC intensification.","language":"English","publisher":"American Meteorological Society","doi":"10.1175/2010JCLI3421.1","issn":"08948755","usgsCitation":"Rawlins, M., Steele, M., Holland, M., Adam, J., Cherry, J., Francis, J., Groisman, P., Hinzman, L., Huntington, T., Kane, D., Kimball, J., Kwok, R., Lammers, R., Lee, C., Lettenmaier, D., McDonald, K., Podest, E., Pundsack, J., Rudels, B., Serreze, M.C., Shiklomanov, A., Skagseth, O., Troy, T., Vorosmarty, C., Wensnahan, M., Wood, E., Woodgate, R., Yang, D., Zhang, K., and Zhang, T., 2010, Analysis of the Arctic system for freshwater cycle intensification: Observations and expectations: Journal of Climate, v. 23, no. 21, p. 5715-5737, https://doi.org/10.1175/2010JCLI3421.1.","productDescription":"23 p.","startPage":"5715","endPage":"5737","ipdsId":"IP-017451","costCenters":[{"id":466,"text":"New England Water Science Center","active":true,"usgs":true}],"links":[{"id":475785,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1175/2010jcli3421.1","text":"Publisher Index Page"},{"id":245980,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":218005,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1175/2010JCLI3421.1"}],"volume":"23","issue":"21","noUsgsAuthors":false,"publicationDate":"2010-11-01","publicationStatus":"PW","scienceBaseUri":"5059eb38e4b0c8380cd48cc3","contributors":{"authors":[{"text":"Rawlins, M.A.","contributorId":73445,"corporation":false,"usgs":true,"family":"Rawlins","given":"M.A.","email":"","affiliations":[],"preferred":false,"id":461641,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Steele, M.","contributorId":96122,"corporation":false,"usgs":true,"family":"Steele","given":"M.","email":"","affiliations":[],"preferred":false,"id":461649,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Holland, M.M.","contributorId":13074,"corporation":false,"usgs":true,"family":"Holland","given":"M.M.","email":"","affiliations":[],"preferred":false,"id":461625,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Adam, J.C.","contributorId":23793,"corporation":false,"usgs":true,"family":"Adam","given":"J.C.","email":"","affiliations":[],"preferred":false,"id":461626,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Cherry, J.E.","contributorId":77398,"corporation":false,"usgs":true,"family":"Cherry","given":"J.E.","email":"","affiliations":[],"preferred":false,"id":461642,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Francis, J.A.","contributorId":64490,"corporation":false,"usgs":true,"family":"Francis","given":"J.A.","email":"","affiliations":[],"preferred":false,"id":461636,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Groisman, P.Y.","contributorId":43603,"corporation":false,"usgs":true,"family":"Groisman","given":"P.Y.","email":"","affiliations":[],"preferred":false,"id":461631,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Hinzman, L. D.","contributorId":90083,"corporation":false,"usgs":false,"family":"Hinzman","given":"L. 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J.","contributorId":104232,"corporation":false,"usgs":false,"family":"Vorosmarty","given":"C. J.","affiliations":[],"preferred":false,"id":461652,"contributorType":{"id":1,"text":"Authors"},"rank":24},{"text":"Wensnahan, M.","contributorId":87011,"corporation":false,"usgs":true,"family":"Wensnahan","given":"M.","email":"","affiliations":[],"preferred":false,"id":461645,"contributorType":{"id":1,"text":"Authors"},"rank":25},{"text":"Wood, E.F.","contributorId":70998,"corporation":false,"usgs":true,"family":"Wood","given":"E.F.","email":"","affiliations":[],"preferred":false,"id":461639,"contributorType":{"id":1,"text":"Authors"},"rank":26},{"text":"Woodgate, R.","contributorId":32763,"corporation":false,"usgs":true,"family":"Woodgate","given":"R.","email":"","affiliations":[],"preferred":false,"id":461628,"contributorType":{"id":1,"text":"Authors"},"rank":27},{"text":"Yang, D.","contributorId":82440,"corporation":false,"usgs":true,"family":"Yang","given":"D.","email":"","affiliations":[],"preferred":false,"id":461644,"contributorType":{"id":1,"text":"Authors"},"rank":28},{"text":"Zhang, K.","contributorId":71724,"corporation":false,"usgs":true,"family":"Zhang","given":"K.","email":"","affiliations":[],"preferred":false,"id":461640,"contributorType":{"id":1,"text":"Authors"},"rank":29},{"text":"Zhang, T.","contributorId":61536,"corporation":false,"usgs":true,"family":"Zhang","given":"T.","email":"","affiliations":[],"preferred":false,"id":461634,"contributorType":{"id":1,"text":"Authors"},"rank":30}]}} ,{"id":70037570,"text":"70037570 - 2010 - Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on a fringing Coral Reef: Evidence from Molokai, Hawaii","interactions":[],"lastModifiedDate":"2012-03-12T17:22:06","indexId":"70037570","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2220,"text":"Journal of Coastal Research","active":true,"publicationSubtype":{"id":10}},"title":"Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on a fringing Coral Reef: Evidence from Molokai, Hawaii","docAbstract":"Accelerating sea-level rise associated with global climate change will affect sedimentary processes on coral reefs and other shoreline environments by increasing energy and sediment resuspension. On reefs, sedimentation is known to increase coral stress and bleaching as particles that settle on coral surfaces interfere with photosynthesis and feeding, and turbidity induced by suspended sediment reduces incident light levels. Using relationships developed from observations of wave orbital velocity, water-surface elevation, and suspended-sediment concentration on a fringing reef flat of Molokai, Hawaii, predictions of the average daily maximum in suspended-sediment concentration increase from ~11 mg/l to ~20 mg/l with 20 cm sea-level rise. The duration of time concentrations exceeds 10 mg/l increases from 9 to 37. An evaluation of the reduction of wave energy flux through breaking and frictional dissipation across the reef flat shows an increase of ~80 relative to the present will potentially reach the shoreline as sea level increases by 20 cm. Where the shoreline exists on low, flat terrain, the increased energy could cause significant erosion of the shoreline. Considering the sediment budget, the sediment flux is predicted to increase and removal of fine-grained sediment may be expedited on some fringing reefs, and sediment in storage on the inner reef could ultimately be reduced. However, increased shoreline erosion may add sediment and offset removal from the reef flat. The shifts in sediment availability and transport that will occur as result of a modest increase in sea level have wide application to fringing coral reefs elsewhere, as well as other shoreline environments. ?? 2010 the Coastal Education & Research Foundation (CERF).","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Journal of Coastal Research","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.2112/JCOASTRES-D-09-00064.1","issn":"07490208","usgsCitation":"Ogston, A., and Field, M., 2010, Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on a fringing Coral Reef: Evidence from Molokai, Hawaii: Journal of Coastal Research, v. 26, no. 6, p. 1027-1037, https://doi.org/10.2112/JCOASTRES-D-09-00064.1.","startPage":"1027","endPage":"1037","numberOfPages":"11","costCenters":[],"links":[{"id":246009,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":218032,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.2112/JCOASTRES-D-09-00064.1"}],"volume":"26","issue":"6","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a81fce4b0c8380cd7b836","contributors":{"authors":[{"text":"Ogston, A.S.","contributorId":86920,"corporation":false,"usgs":true,"family":"Ogston","given":"A.S.","email":"","affiliations":[],"preferred":false,"id":461667,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Field, M.E.","contributorId":27052,"corporation":false,"usgs":true,"family":"Field","given":"M.E.","affiliations":[],"preferred":false,"id":461666,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70042495,"text":"70042495 - 2010 - On the resolution of shallow mantle viscosity structure using post-earthquake relaxation data: Application to the 1999 Hector Mine, California, earthquake","interactions":[],"lastModifiedDate":"2013-04-30T14:27:32","indexId":"70042495","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2314,"text":"Journal of Geophysical Research B: Solid Earth","active":true,"publicationSubtype":{"id":10}},"title":"On the resolution of shallow mantle viscosity structure using post-earthquake relaxation data: Application to the 1999 Hector Mine, California, earthquake","docAbstract":"Most models of lower crust/mantle viscosity inferred from postearthquake relaxation assume one or two uniform-viscosity layers. A few existing models possess apparently significant radially variable viscosity structure in the shallow mantle (e.g., the upper 200 km), but the resolution of such variations is not clear. We use a geophysical inverse procedure to address the resolving power of inferred shallow mantle viscosity structure using postearthquake relaxation data. We apply this methodology to 9 years of GPS-constrained crustal motions after the 16 October 1999 M = 7.1 Hector Mine earthquake. After application of a differencing method to isolate the postearthquake signal from the “background” crustal velocity field, we find that surface velocities diminish from ∼20 mm/yr in the first few months to ≲2 mm/yr after 2 years. Viscoelastic relaxation of the mantle, with a time-dependent effective viscosity prescribed by a Burgers body, provides a good explanation for the postseismic crustal deformation, capturing both the spatial and temporal pattern. In the context of the Burgers body model (which involves a transient viscosity and steady state viscosity), a resolution analysis based on the singular value decomposition reveals that at most, two constraints on depth-dependent steady state mantle viscosity are provided by the present data set. Uppermost mantle viscosity (depth ≲ 60 km) is moderately resolved, but deeper viscosity structure is poorly resolved. The simplest model that explains the data better than that of uniform steady state mantle viscosity involves a linear gradient in logarithmic viscosity with depth, with a small increase from the Moho to 220 km depth. However, the viscosity increase is not statistically significant. This suggests that the depth-dependent steady state viscosity is not resolvably different from uniformity in the uppermost mantle.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Journal of Geophysical Research B: Solid Earth","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Wiley","doi":"10.1029/2010JB007405","usgsCitation":"Pollitz, F., and Thatcher, W.R., 2010, On the resolution of shallow mantle viscosity structure using post-earthquake relaxation data: Application to the 1999 Hector Mine, California, earthquake: Journal of Geophysical Research B: Solid Earth, 20 p., https://doi.org/10.1029/2010JB007405.","productDescription":"20 p.","numberOfPages":"20","additionalOnlineFiles":"N","ipdsId":"IP-019815","costCenters":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"links":[{"id":271680,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":271679,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1029/2010JB007405"}],"country":"United States","state":"California","geographicExtents":"{ \"type\": \"FeatureCollection\", \"features\": [ { \"type\": \"Feature\", \"properties\": {}, \"geometry\": { \"type\": \"Polygon\", \"coordinates\": [ [ [ -120.56,33.01 ], [ -120.56,37.00 ], [ -114.96,37.00 ], [ -114.96,33.01 ], [ -120.56,33.01 ] ] ] } } ] }","noUsgsAuthors":false,"publicationDate":"2010-10-15","publicationStatus":"PW","scienceBaseUri":"5180e7e9e4b0df838b924d80","contributors":{"authors":[{"text":"Pollitz, Fred F. fpollitz@usgs.gov","contributorId":2408,"corporation":false,"usgs":true,"family":"Pollitz","given":"Fred F.","email":"fpollitz@usgs.gov","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":false,"id":471643,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Thatcher, Wayne R. 0000-0001-6324-545X thatcher@usgs.gov","orcid":"https://orcid.org/0000-0001-6324-545X","contributorId":2599,"corporation":false,"usgs":true,"family":"Thatcher","given":"Wayne","email":"thatcher@usgs.gov","middleInitial":"R.","affiliations":[{"id":237,"text":"Earthquake Science Center","active":true,"usgs":true}],"preferred":true,"id":471644,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70034240,"text":"70034240 - 2010 - The vegetation outlook (VegOut): a new method for predicting vegetation seasonal greenness","interactions":[],"lastModifiedDate":"2012-12-26T12:25:12","indexId":"70034240","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1722,"text":"GIScience and Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"The vegetation outlook (VegOut): a new method for predicting vegetation seasonal greenness","docAbstract":"The vegetation outlook (VegOut) is a geospatial tool for predicting general vegetation condition patterns across large areas. VegOut predicts a standardized seasonal greenness (SSG) measure, which represents a general indicator of relative vegetation health. VegOut predicts SSG values at multiple time steps (two to six weeks into the future) based on the analysis of \"historical patterns\" (i.e., patterns at each 1 km grid cell and time of the year) of satellite, climate, and oceanic data over an 18-year period (1989 to 2006). The model underlying VegOut capitalizes on historical climate-vegetation interactions and ocean-climate teleconnections (such as El Niño and the Southern Oscillation, ENSO) expressed over the 18-year data record and also considers several environmental characteristics (e.g., land use/cover type and soils) that influence vegetation's response to weather conditions to produce 1 km maps that depict future general vegetation conditions. VegOut provides regionallevel vegetation monitoring capabilities with local-scale information (e.g., county to sub-county level) that can complement more traditional remote sensing-based approaches that monitor \"current\" vegetation conditions. In this paper, the VegOut approach is discussed and a case study over the central United States for selected periods of the 2008 growing season is presented to demonstrate the potential of this new tool for assessing and predicting vegetation conditions.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"GIScience and Remote Sensing","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Bellwether Publishing, Ltd.","publisherLocation":"Columbia, MD","doi":"10.2747/1548-1603.47.1.25","issn":"15481603","usgsCitation":"Tadesse, T., Wardlow, B., Hayes, M., Svoboda, M., and Brown, J., 2010, The vegetation outlook (VegOut): a new method for predicting vegetation seasonal greenness: GIScience and Remote Sensing, v. 47, no. 1, p. 25-52, https://doi.org/10.2747/1548-1603.47.1.25.","productDescription":"28 p.","startPage":"25","endPage":"52","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":475891,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.2747/1548-1603.47.1.25","text":"Publisher Index Page"},{"id":244876,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":216971,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.2747/1548-1603.47.1.25"}],"volume":"47","issue":"1","noUsgsAuthors":false,"publicationDate":"2013-05-15","publicationStatus":"PW","scienceBaseUri":"505bb1b5e4b08c986b3253b6","contributors":{"authors":[{"text":"Tadesse, T.","contributorId":57661,"corporation":false,"usgs":true,"family":"Tadesse","given":"T.","affiliations":[],"preferred":false,"id":444849,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wardlow, B.","contributorId":56863,"corporation":false,"usgs":false,"family":"Wardlow","given":"B.","email":"","affiliations":[{"id":12505,"text":"University of Nebraska - Lincoln","active":true,"usgs":false}],"preferred":false,"id":444848,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Hayes, M.","contributorId":68138,"corporation":false,"usgs":true,"family":"Hayes","given":"M.","affiliations":[],"preferred":false,"id":444851,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Svoboda, M.","contributorId":74604,"corporation":false,"usgs":true,"family":"Svoboda","given":"M.","email":"","affiliations":[],"preferred":false,"id":444852,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Brown, J.","contributorId":57801,"corporation":false,"usgs":true,"family":"Brown","given":"J.","affiliations":[],"preferred":false,"id":444850,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}} ,{"id":70034225,"text":"70034225 - 2010 - The anatomy of a (potential) disaster: Volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus)","interactions":[],"lastModifiedDate":"2012-03-12T17:21:46","indexId":"70034225","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1015,"text":"Biological Conservation","active":true,"publicationSubtype":{"id":10}},"title":"The anatomy of a (potential) disaster: Volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus)","docAbstract":"Catastrophic events, either from natural (e.g., hurricane) or human-induced (e.g., forest clear-cut) processes, are a well-known threat to wild populations. However, our lack of knowledge about population-level effects of catastrophic events has inhibited the careful examination of how catastrophes affect population growth and persistence. For the critically endangered short-tailed albatross (Phoebastria albatrus), episodic volcanic eruptions are considered a serious catastrophic threat since approximately 80% of the global population of ???2500 birds (in 2006) currently breeds on an active volcano, Torishima Island. We evaluated how short-tailed albatross population persistence is affected by the catastrophic threat of a volcanic eruption relative to chronic threats. We also provide an example for overcoming the seemingly overwhelming problems created by modelling the population dynamics of a species with limited demographic data by incorporating uncertainty in our analysis. As such, we constructed a stochastic age-based matrix model that incorporated both catastrophic mortality due to volcanic eruptions and chronic mortality from several potential sources (e.g., contaminant exposure, fisheries bycatch) to determine the relative effects of these two types of threats on short-tailed albatross population growth and persistence. Modest increases (1%) in chronic (annual) mortality had a 2.5-fold greater effect on predicted short-tailed albatross stochastic population growth rate (lambda) than did the occurrence of periodic volcanic eruptions that follow historic eruption frequencies (annual probability of eruption 2.2%). Our work demonstrates that periodic catastrophic volcanic eruptions, despite their dramatic nature, are less likely to affect the population viability and recovery of short-tailed albatross than low-level chronic mortality. ?? 2009 Elsevier Ltd.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Biological Conservation","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1016/j.biocon.2009.10.013","issn":"00063207","usgsCitation":"Finkelstein, M., Wolf, S., Goldman, M., Doak, D., Sievert, P., Balogh, G., and Hasegawa, H., 2010, The anatomy of a (potential) disaster: Volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus): Biological Conservation, v. 143, no. 2, p. 321-331, https://doi.org/10.1016/j.biocon.2009.10.013.","startPage":"321","endPage":"331","numberOfPages":"11","costCenters":[],"links":[{"id":216730,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.biocon.2009.10.013"},{"id":244616,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"143","issue":"2","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505ba9bce4b08c986b32248e","contributors":{"authors":[{"text":"Finkelstein, M.E.","contributorId":94885,"corporation":false,"usgs":true,"family":"Finkelstein","given":"M.E.","email":"","affiliations":[],"preferred":false,"id":444702,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wolf, S.","contributorId":76869,"corporation":false,"usgs":true,"family":"Wolf","given":"S.","affiliations":[],"preferred":false,"id":444700,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Goldman, M.","contributorId":84540,"corporation":false,"usgs":true,"family":"Goldman","given":"M.","affiliations":[],"preferred":false,"id":444701,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Doak, D.F.","contributorId":39729,"corporation":false,"usgs":true,"family":"Doak","given":"D.F.","email":"","affiliations":[],"preferred":false,"id":444697,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Sievert, P.R.","contributorId":104858,"corporation":false,"usgs":true,"family":"Sievert","given":"P.R.","email":"","affiliations":[],"preferred":false,"id":444703,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Balogh, G.","contributorId":42461,"corporation":false,"usgs":true,"family":"Balogh","given":"G.","email":"","affiliations":[],"preferred":false,"id":444698,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Hasegawa, H.","contributorId":48416,"corporation":false,"usgs":true,"family":"Hasegawa","given":"H.","email":"","affiliations":[],"preferred":false,"id":444699,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}} ,{"id":70037712,"text":"70037712 - 2010 - Dacite petrogenesis on mid-ocean ridges: Evidence for oceanic crustal melting and assimilation","interactions":[],"lastModifiedDate":"2012-04-30T16:43:34","indexId":"70037712","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2420,"text":"Journal of Petrology","active":true,"publicationSubtype":{"id":10}},"title":"Dacite petrogenesis on mid-ocean ridges: Evidence for oceanic crustal melting and assimilation","docAbstract":"Whereas the majority of eruptions at oceanic spreading centers produce lavas with relatively homogeneous mid-ocean ridge basalt (MORB) compositions, the formation of tholeiitic andesites and dacites at mid-ocean ridges (MORs) is a petrological enigma. Eruptions of MOR high-silica lavas are typically associated with ridge discontinuities and have produced regionally significant volumes of lava. Andesites and dacites have been observed and sampled at several locations along the global MOR system; these include propagating ridge tips at ridge-transform intersections on the Juan de Fuca Ridge and eastern Gal??pagos spreading center, and at the 9??N overlapping spreading center on the East Pacific Rise. Despite the formation of these lavas at various ridges, MOR dacites show remarkably similar major element trends and incompatible trace element enrichments, suggesting that similar processes are controlling their chemistry. Although most geochemical variability in MOR basalts is consistent with low-pressure fractional crystallization of various mantle-derived parental melts, our geochemical data for MOR dacitic glasses suggest that contamination from a seawater-altered component is important in their petrogenesis. MOR dacites are characterized by elevated U, Th, Zr, and Hf, low Nb and Ta concentrations relative to rare earth elements (REE), and Al2O3, K2O, and Cl concentrations that are higher than expected from low-pressure fractional crystallization alone. Petrological modeling of MOR dacites suggests that partial melting and assimilation are both integral to their petrogenesis. Extensive fractional crystallization of a MORB parent combined with partial melting and assimilation of amphibole-bearing altered crust produces a magma with a geochemical signature similar to a MOR dacite. This supports the hypothesis that crustal assimilation is an important process in the formation of highly evolved MOR lavas and may be significant in the generation of evolved MORB in general. Additionally, these processes are likely to be more common in regions of episodic magma supply and enhanced magma-crust interaction such as at the ends of ridge segments. ?? The Author 2010. Published by Oxford University Press. All rights reserved.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Journal of Petrology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1093/petrology/egq056","issn":"00223530","usgsCitation":"Wanless, V., Perfit, M., Ridley, W., and Klein, E., 2010, Dacite petrogenesis on mid-ocean ridges: Evidence for oceanic crustal melting and assimilation: Journal of Petrology, v. 51, no. 12, p. 2377-2410, https://doi.org/10.1093/petrology/egq056.","startPage":"2377","endPage":"2410","numberOfPages":"34","costCenters":[],"links":[{"id":475859,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1093/petrology/egq056","text":"Publisher Index Page"},{"id":245887,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":217914,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1093/petrology/egq056"}],"volume":"51","issue":"12","noUsgsAuthors":false,"publicationDate":"2010-12-02","publicationStatus":"PW","scienceBaseUri":"5059fd57e4b0c8380cd4e7ab","contributors":{"authors":[{"text":"Wanless, V.D.","contributorId":30487,"corporation":false,"usgs":true,"family":"Wanless","given":"V.D.","email":"","affiliations":[],"preferred":false,"id":462446,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Perfit, M.R.","contributorId":45467,"corporation":false,"usgs":true,"family":"Perfit","given":"M.R.","email":"","affiliations":[],"preferred":false,"id":462447,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ridley, W.I.","contributorId":72122,"corporation":false,"usgs":true,"family":"Ridley","given":"W.I.","email":"","affiliations":[],"preferred":false,"id":462448,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Klein, E.","contributorId":97356,"corporation":false,"usgs":true,"family":"Klein","given":"E.","email":"","affiliations":[],"preferred":false,"id":462449,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70034345,"text":"70034345 - 2010 - A geostatistical approach to mapping site response spectral amplifications","interactions":[],"lastModifiedDate":"2012-03-12T17:21:47","indexId":"70034345","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1517,"text":"Engineering Geology","active":true,"publicationSubtype":{"id":10}},"title":"A geostatistical approach to mapping site response spectral amplifications","docAbstract":"If quantitative estimates of the seismic properties do not exist at a location of interest then the site response spectral amplifications must be estimated from data collected at other locations. Currently, the most common approach employs correlations of site class with maps of surficial geology. Analogously, correlations of site class with topographic slope can be employed where the surficial geology is unknown. Our goal is to identify and validate a method to estimate site response with greater spatial resolution and accuracy for regions where additional effort is warranted. This method consists of three components: region-specific data collection, a spatial model for interpolating seismic properties, and a theoretical method for computing spectral amplifications from the interpolated seismic properties. We consider three spatial interpolation schemes: correlations with surficial geology, termed the geologic trend (GT), ordinary kriging (OK), and kriging with a trend (KT). We estimate the spectral amplifications from seismic properties using the square root of impedance method, thereby linking the frequency-dependent spectral amplifications to the depth-dependent seismic properties. Thus, the range of periods for which this method is applicable is limited by the depth of exploration. A dense survey of near-surface S-wave slowness (Ss) throughout Kobe, Japan shows that the geostatistical methods give more accurate estimates of Ss than the topographic slope and GT methods, and the OK and KT methods perform equally well. We prefer the KT model because it can be seamlessly integrated with geologic maps that cover larger regions. Empirical spectral amplifications show that the region-specific data achieve more accurate estimates of observed median short-period amplifications than the topographic slope method. ?? 2010 Elsevier B.V.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Engineering Geology","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1016/j.enggeo.2010.05.010","issn":"00137952","usgsCitation":"Thompson, E., Baise, L., Kayen, R.E., Tanaka, Y., and Tanaka, H., 2010, A geostatistical approach to mapping site response spectral amplifications: Engineering Geology, v. 114, no. 3-4, p. 330-342, https://doi.org/10.1016/j.enggeo.2010.05.010.","startPage":"330","endPage":"342","numberOfPages":"13","costCenters":[],"links":[{"id":475944,"rank":10000,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://escholarship.org/uc/item/35p167nr","text":"External Repository"},{"id":216674,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1016/j.enggeo.2010.05.010"},{"id":244559,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"114","issue":"3-4","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5059e407e4b0c8380cd4636b","contributors":{"authors":[{"text":"Thompson, E.M.","contributorId":104688,"corporation":false,"usgs":true,"family":"Thompson","given":"E.M.","affiliations":[],"preferred":false,"id":445334,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Baise, L.G.","contributorId":6239,"corporation":false,"usgs":true,"family":"Baise","given":"L.G.","affiliations":[],"preferred":false,"id":445330,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kayen, R. E.","contributorId":14424,"corporation":false,"usgs":true,"family":"Kayen","given":"R.","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":445332,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Tanaka, Y.","contributorId":14214,"corporation":false,"usgs":true,"family":"Tanaka","given":"Y.","email":"","affiliations":[],"preferred":false,"id":445331,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Tanaka, H.","contributorId":35521,"corporation":false,"usgs":true,"family":"Tanaka","given":"H.","email":"","affiliations":[],"preferred":false,"id":445333,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}} ,{"id":70037686,"text":"70037686 - 2010 - Sediment contamination of residential streams in the metropolitan Kansas City area, USA: Part II. whole-sediment toxicity to the amphipod hyalella azteca","interactions":[],"lastModifiedDate":"2018-10-22T10:21:49","indexId":"70037686","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":887,"text":"Archives of Environmental Contamination and Toxicology","active":true,"publicationSubtype":{"id":10}},"title":"Sediment contamination of residential streams in the metropolitan Kansas City area, USA: Part II. whole-sediment toxicity to the amphipod hyalella azteca","docAbstract":"This is the second part of a study that evaluates the influence of nonpoint sources on the sediment quality of five adjacent streams within the metropolitan Kansas City area, central United States. Physical, chemical, and toxicity data (Hyalella azteca 28-day whole-sediment toxicity test) for 29 samples collected in 2003 were used for this evaluation, and the potential causes for the toxic effects were explored. The sediments exhibited a low to moderate toxicity, with five samples identified as toxic to H. azteca. Metals did not likely cause the toxicity based on low concentrations of metals in the pore water and elevated concentrations of acid volatile sulfide in the sediments. Although individual polycyclic aromatic hydrocarbons (PAHs) frequently exceeded effect-based sediment quality guidelines [probable effect concentrations (PECs)], only four of the samples had a PEC quotient (PEC-Q) for total PAHs over 1.0 and only one of these four samples was identified as toxic. For the mean PEC-Q for organochlorine compounds (chlordane, dieldrin, sum DDEs), 4 of the 12 samples with a mean PEC-Q above 1.0 were toxic and 4 of the 8 samples with a mean PEC-Q above 3.0 were toxic. Additionally, four of eight samples were toxic, with a mean PEC-Q above 1.0 based on metals, PAHs, polychlorinated biphenyls (PCBs), and organochlorine pesticides. The increase in the incidence of toxicity with the increase in the mean PEC-Q based on organochlorine pesticides or based on metals, PAHs, PCBs, and organochlorine pesticides suggests that organochlorine pesticides might have contributed to the observed toxicity and that the use of a mean PEC-Q, rather than PEC-Qs for individual compounds, might be more informative in predicting toxic effects. Our study shows that stream sediments subject to predominant nonpoint sources contamination can be toxic and that many factors, including analysis of a full suite of PAHs and pesticides of both past and present urban applications and the origins of these organic compounds, are important to identify the causes of toxicity.
","language":"English","publisher":"Springer","doi":"10.1007/s00244-010-9498-1","issn":"00904341","usgsCitation":"Tao, J., Ingersoll, C.G., Kemble, N.E., Dias, J., Murowchick, J., Welker, G., and Huggins, D., 2010, Sediment contamination of residential streams in the metropolitan Kansas City area, USA: Part II. whole-sediment toxicity to the amphipod hyalella azteca: Archives of Environmental Contamination and Toxicology, v. 59, no. 3, p. 370-381, https://doi.org/10.1007/s00244-010-9498-1.","productDescription":"12 p.","startPage":"370","endPage":"381","numberOfPages":"12","costCenters":[{"id":34983,"text":"Contaminant Biology Program","active":true,"usgs":true}],"links":[{"id":245926,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":217953,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s00244-010-9498-1"}],"country":"United States","state":"Kansas, Missouri","city":"Kansas City","volume":"59","issue":"3","noUsgsAuthors":false,"publicationDate":"2010-04-16","publicationStatus":"PW","scienceBaseUri":"505b8967e4b08c986b316dc9","contributors":{"authors":[{"text":"Tao, J.","contributorId":56485,"corporation":false,"usgs":true,"family":"Tao","given":"J.","email":"","affiliations":[],"preferred":false,"id":462290,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ingersoll, Christopher G. 0000-0003-4531-5949 cingersoll@usgs.gov","orcid":"https://orcid.org/0000-0003-4531-5949","contributorId":2071,"corporation":false,"usgs":true,"family":"Ingersoll","given":"Christopher","email":"cingersoll@usgs.gov","middleInitial":"G.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":462289,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Kemble, Nile E. 0000-0002-3608-0538 nkemble@usgs.gov","orcid":"https://orcid.org/0000-0002-3608-0538","contributorId":2626,"corporation":false,"usgs":true,"family":"Kemble","given":"Nile","email":"nkemble@usgs.gov","middleInitial":"E.","affiliations":[{"id":192,"text":"Columbia Environmental Research Center","active":true,"usgs":true}],"preferred":true,"id":462286,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Dias, J.R.","contributorId":97748,"corporation":false,"usgs":true,"family":"Dias","given":"J.R.","email":"","affiliations":[],"preferred":false,"id":462291,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Murowchick, J.B.","contributorId":45058,"corporation":false,"usgs":true,"family":"Murowchick","given":"J.B.","email":"","affiliations":[],"preferred":false,"id":462288,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Welker, G.","contributorId":21390,"corporation":false,"usgs":true,"family":"Welker","given":"G.","email":"","affiliations":[],"preferred":false,"id":462285,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Huggins, D.","contributorId":29250,"corporation":false,"usgs":true,"family":"Huggins","given":"D.","email":"","affiliations":[],"preferred":false,"id":462287,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}} ,{"id":70034224,"text":"70034224 - 2010 - Predicting performance for ecological restoration: A case study using Spartina altemiflora","interactions":[],"lastModifiedDate":"2012-03-12T17:21:46","indexId":"70034224","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1450,"text":"Ecological Applications","active":true,"publicationSubtype":{"id":10}},"title":"Predicting performance for ecological restoration: A case study using Spartina altemiflora","docAbstract":"The success of population-based ecological restoration relies on the growth and reproductive performance of selected donor materials, whether consisting of whole plants or seed. Accurately predicting performance requires an understanding of a variety of underlying processes, particularly gene flow and selection, which can be measured, at least in part, using surrogates such as neutral marker genetic distances and simple latitudinal effects. Here we apply a structural equation modeling approach to understanding and predicting performance in a widespread salt marsh grass, Spartina alterniflora, commonly used for ecological restoration throughout its native range in North America. We collected source materials from throughout this range, consisting of eight clones each from 23 populations, for transplantation to a common garden site in coastal Louisiana and monitored their performance. We modeled performance as a latent process described by multiple indicator variables (e.g., clone diameter, stem number) and estimated direct and indirect influences of geographic and genetic distances on performance. Genetic distances were determined by comparison of neutral molecular markers with those from a local population at the common garden site. Geographic distance metrics included dispersal distance (the minimum distance over water between donor and experimental sites) and latitude. Model results indicate direct effects of genetic distance and latitude on performance variation among the donor sites. Standardized effect strengths indicate that performance was roughly twice as sensitive to variation in genetic distance as to latitudinal variation. Dispersal distance had an indirect influence on performance through effects on genetic distance, indicating a typical pattern of genetic isolation by distance. Latitude also had an indirect effect on genetic distance through its linear relationship with dispersal distance. Three performance indicators had significant loadings on performance alone (mean clone diameter, mean number of stems, mean number of inflorescences), while the performance indicators mean stem height and mean stem width were also influenced by latitude. We suggest that dispersal distance and latitude should provide an adequate means of predicting performance in future S. alterniflora restorations and propose a maximum sampling distance of 300 km (holding latitude constant) to avoid the sampling of inappropriate ecotypes. ?? 2010 by the Ecological Society of America.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Ecological Applications","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1890/08-1443.1","issn":"10510761","usgsCitation":"Travis, S., and Grace, J., 2010, Predicting performance for ecological restoration: A case study using Spartina altemiflora: Ecological Applications, v. 20, no. 1, p. 192-204, https://doi.org/10.1890/08-1443.1.","startPage":"192","endPage":"204","numberOfPages":"13","costCenters":[],"links":[{"id":475940,"rank":10000,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1890/08-1443.1","text":"Publisher Index Page"},{"id":216729,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1890/08-1443.1"},{"id":244615,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"20","issue":"1","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a81c1e4b0c8380cd7b6f1","contributors":{"authors":[{"text":"Travis, S.E. 0000-0001-9338-8953","orcid":"https://orcid.org/0000-0001-9338-8953","contributorId":28718,"corporation":false,"usgs":true,"family":"Travis","given":"S.E.","email":"","affiliations":[],"preferred":false,"id":444695,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Grace, J.B. 0000-0001-6374-4726","orcid":"https://orcid.org/0000-0001-6374-4726","contributorId":38938,"corporation":false,"usgs":true,"family":"Grace","given":"J.B.","affiliations":[],"preferred":false,"id":444696,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70037693,"text":"70037693 - 2010 - Patterns of ancestry and genetic diversity in reintroduced populations of the slimy sculpin: Implications for conservation","interactions":[],"lastModifiedDate":"2012-04-30T16:43:34","indexId":"70037693","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1324,"text":"Conservation Genetics","active":true,"publicationSubtype":{"id":10}},"title":"Patterns of ancestry and genetic diversity in reintroduced populations of the slimy sculpin: Implications for conservation","docAbstract":"Reintroductions are a common approach for preserving intraspecific biodiversity in fragmented landscapes. However, they may exacerbate the reduction in genetic diversity initially caused by population fragmentation because the effective population size of reintroduced populations is often smaller and reintroduced populations also tend to be more geographically isolated than native populations. Mixing genetically divergent sources for reintroduction purposes is a practice intended to increase genetic diversity. We documented the outcome of reintroductions from three mixed sources on the ancestral composition and genetic variation of a North American fish, the slimy sculpin (Cottus cognatus). We used microsatellite markers to evaluate allelic richness and heterozygosity in the reintroduced populations relative to computer simulated expectations. Sculpins in reintroduced populations exhibited higher levels of heterozygosity and allelic richness than any single source, but only slightly higher than the single most genetically diverse source population. Simulations intended to mimic an ideal scenario for maximizing genetic variation in the reintroduced populations also predicted increases, but they were only moderately greater than the most variable source population. We found that a single source contributed more than the other two sources at most reintroduction sites. We urge caution when choosing whether to mix source populations in reintroduction programs. Genetic characteristics of candidate source populations should be evaluated prior to reintroduction if feasible. When combined with knowledge of the degree of genetic distinction among sources, simulations may allow the genetic diversity benefits of mixing populations to be weighed against the risks of outbreeding depression in reintroduced and nearby populations. ?? 2010 US Government.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Conservation Genetics","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1007/s10592-010-0124-6","issn":"15660621","usgsCitation":"Huff, D., Miller, L., and Vondracek, B., 2010, Patterns of ancestry and genetic diversity in reintroduced populations of the slimy sculpin: Implications for conservation: Conservation Genetics, v. 11, no. 6, p. 2379-2391, https://doi.org/10.1007/s10592-010-0124-6.","startPage":"2379","endPage":"2391","numberOfPages":"13","costCenters":[],"links":[{"id":475895,"rank":10000,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://hdl.handle.net/11299/183583","text":"External Repository"},{"id":218011,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1007/s10592-010-0124-6"},{"id":245987,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"11","issue":"6","noUsgsAuthors":false,"publicationDate":"2010-09-06","publicationStatus":"PW","scienceBaseUri":"505a75c6e4b0c8380cd77d31","contributors":{"authors":[{"text":"Huff, D.D.","contributorId":31913,"corporation":false,"usgs":true,"family":"Huff","given":"D.D.","email":"","affiliations":[],"preferred":false,"id":462329,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Miller, L.M.","contributorId":16245,"corporation":false,"usgs":true,"family":"Miller","given":"L.M.","email":"","affiliations":[],"preferred":false,"id":462328,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Vondracek, B.","contributorId":69930,"corporation":false,"usgs":true,"family":"Vondracek","given":"B.","affiliations":[],"preferred":false,"id":462330,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}} ,{"id":70037666,"text":"70037666 - 2010 - Solute and heat transport model of the Henry and Hilleke laboratory experiment","interactions":[],"lastModifiedDate":"2012-04-30T16:43:35","indexId":"70037666","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1861,"text":"Ground Water","active":true,"publicationSubtype":{"id":10}},"title":"Solute and heat transport model of the Henry and Hilleke laboratory experiment","docAbstract":"SEAWAT is a coupled version of MODFLOW and MT3DMS designed to simulate variable-density ground water flow and solute transport. The most recent version of SEAWAT, called SEAWAT Version 4, includes new capabilities to represent simultaneous multispecies solute and heat transport. To test the new features in SEAWAT, the laboratory experiment of Henry and Hilleke (1972) was simulated. Henry and Hilleke used warm fresh water to recharge a large sand-filled glass tank. A cold salt water boundary was represented on one side. Adjustable heating pads were used to heat the bottom and left sides of the tank. In the laboratory experiment, Henry and Hilleke observed both salt water and fresh water flow systems separated by a narrow transition zone. After minor tuning of several input parameters with a parameter estimation program, results from the SEAWAT simulation show good agreement with the experiment. SEAWAT results suggest that heat loss to the room was more than expected by Henry and Hilleke, and that multiple thermal convection cells are the likely cause of the widened transition zone near the hot end of the tank. Other computer programs with similar capabilities may benefit from benchmark testing with the Henry and Hilleke laboratory experiment. Journal Compilation ?? 2009 National Ground Water Association.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Ground Water","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1111/j.1745-6584.2009.00596.x","issn":"0017467X","usgsCitation":"Langevin, C., Dausman, A., and Sukop, M., 2010, Solute and heat transport model of the Henry and Hilleke laboratory experiment: Ground Water, v. 48, no. 5, p. 757-770, https://doi.org/10.1111/j.1745-6584.2009.00596.x.","startPage":"757","endPage":"770","numberOfPages":"14","costCenters":[],"links":[{"id":246002,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":218025,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1111/j.1745-6584.2009.00596.x"}],"volume":"48","issue":"5","noUsgsAuthors":false,"publicationDate":"2010-08-19","publicationStatus":"PW","scienceBaseUri":"505b924ee4b08c986b319e1f","contributors":{"authors":[{"text":"Langevin, C.D.","contributorId":25976,"corporation":false,"usgs":true,"family":"Langevin","given":"C.D.","email":"","affiliations":[],"preferred":false,"id":462185,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Dausman, A.M.","contributorId":99373,"corporation":false,"usgs":true,"family":"Dausman","given":"A.M.","affiliations":[],"preferred":false,"id":462187,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Sukop, M.C.","contributorId":88468,"corporation":false,"usgs":true,"family":"Sukop","given":"M.C.","affiliations":[],"preferred":false,"id":462186,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}} ,{"id":70156906,"text":"70156906 - 2010 - Water-budget methods","interactions":[{"subject":{"id":70156906,"text":"70156906 - 2010 - Water-budget methods","indexId":"70156906","publicationYear":"2010","noYear":false,"chapter":"2","title":"Water-budget methods"},"predicate":"IS_PART_OF","object":{"id":70189200,"text":"70189200 - 2010 - Estimating groundwater recharge","indexId":"70189200","publicationYear":"2010","noYear":false,"title":"Estimating groundwater recharge"},"id":1}],"isPartOf":{"id":70189200,"text":"70189200 - 2010 - Estimating groundwater recharge","indexId":"70189200","publicationYear":"2010","noYear":false,"title":"Estimating groundwater recharge"},"lastModifiedDate":"2021-04-26T17:34:23.507642","indexId":"70156906","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"2","title":"Water-budget methods","docAbstract":"A water budget is an accounting of water movement into and out of, and storage change within, some control volume. Universal and adaptable are adjectives that reflect key features of water-budget methods for estimating recharge. The universal concept of mass conservation of water implies that water-budget methods are applicable over any space and time scales (Healy et al., 2007). The water budget of a soil column in a laboratory can be studied at scales of millimeters and seconds. A water-budget equation is also an integral component of atmospheric general circulation models used to predict global climates over periods of decades or more. Water-budget equations can be easily customized by adding or removing terms to accurately portray the peculiarities of any hydrologic system. The equations are generally not bound by assumptions on mechanisms by which water moves into, through, and out of the control volume of interest. So water-budget methods can be used to estimate both diffuse and focused recharge, and recharge estimates are unaffected by phenomena such as preferential flow paths within the unsaturated zone.
Water-budget methods represent the largest class of techniques for estimating recharge. Most hydrologic models are derived from a water-budget equation and can therefore be classified as water-budget models. It is not feasible to address all water-budget methods in a single chapter. This chapter is limited to discussion of the “residual” water-budget approach, whereby all variables in a water-budget equation, except for recharge, are independently measured or estimated and recharge is set equal to the residual. This chapter is closely linked with Chapter 3, on modeling methods, because the equations presented here form the basis of many models and because models are often used to estimate individual components in water-budget studies. Water budgets for streams and other surface-water bodies are addressed in Chapter 4. The use of soil-water budgets and lysimeters for determining potential recharge and evapotranspiration from changes in water storage is discussed in Chapter 5. Aquifer water-budget methods based on the measurement of groundwater levels are described in Chapter 6.
","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Estimating groundwater recharge","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Cambridge University Press","doi":"10.1017/CBO9780511780745.003","isbn":"9780511780745","usgsCitation":"Healy, R.W., 2010, Water-budget methods, chap. 2 of Estimating groundwater recharge, p. 15-42, https://doi.org/10.1017/CBO9780511780745.003.","productDescription":"28 p.","startPage":"15","endPage":"42","onlineOnly":"N","additionalOnlineFiles":"N","ipdsId":"IP-008545","costCenters":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"links":[{"id":307797,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"560bb71ee4b058f706e53f9e","contributors":{"authors":[{"text":"Healy, Richard W. 0000-0002-0224-1858 rwhealy@usgs.gov","orcid":"https://orcid.org/0000-0002-0224-1858","contributorId":658,"corporation":false,"usgs":true,"family":"Healy","given":"Richard","email":"rwhealy@usgs.gov","middleInitial":"W.","affiliations":[{"id":5044,"text":"National Research Program - Central Branch","active":true,"usgs":true}],"preferred":true,"id":571087,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}} ,{"id":70037608,"text":"70037608 - 2010 - Simulation and analysis of conjunctive use with MODFLOW's farm process","interactions":[],"lastModifiedDate":"2018-09-18T10:19:23","indexId":"70037608","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1861,"text":"Ground Water","active":true,"publicationSubtype":{"id":10}},"title":"Simulation and analysis of conjunctive use with MODFLOW's farm process","docAbstract":"The extension of MODFLOW onto the landscape with the Farm Process (MF-FMP) facilitates fully coupled simulation of the use and movement of water from precipitation, streamflow and runoff, groundwater flow, and consumption by natural and agricultural vegetation throughout the hydrologic system at all times. This allows for more complete analysis of conjunctive use water-resource systems than previously possible with MODFLOW by combining relevant aspects of the landscape with the groundwater and surface water components. This analysis is accomplished using distributed cell-by-cell supply-constrained and demand-driven components across the landscape within \" water-balance subregions\" comprised of one or more model cells that can represent a single farm, a group of farms, or other hydrologic or geopolitical entities. Simulation of micro-agriculture in the Pajaro Valley and macro-agriculture in the Central Valley are used to demonstrate the utility of MF-FMP. For Pajaro Valley, the simulation of an aquifer storage and recovery system and related coastal water distribution system to supplant coastal pumpage was analyzed subject to climate variations and additional supplemental sources such as local runoff. For the Central Valley, analysis of conjunctive use from different hydrologic settings of northern and southern subregions shows how and when precipitation, surface water, and groundwater are important to conjunctive use. The examples show that through MF-FMP's ability to simulate natural and anthropogenic components of the hydrologic cycle, the distribution and dynamics of supply and demand can be analyzed, understood, and managed. This analysis of conjunctive use would be difficult without embedding them in the simulation and are difficult to estimate a priori. Journal compilation ?? 2010 National Ground Water Association. No claim to original US government works.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Ground Water","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1111/j.1745-6584.2010.00730.x","issn":"0017467X","usgsCitation":"Hanson, R.T., Schmid, W., Faunt, C., and Lockwood, B., 2010, Simulation and analysis of conjunctive use with MODFLOW's farm process: Ground Water, v. 48, no. 5, p. 674-689, https://doi.org/10.1111/j.1745-6584.2010.00730.x.","startPage":"674","endPage":"689","numberOfPages":"16","costCenters":[{"id":154,"text":"California Water Science Center","active":true,"usgs":true}],"links":[{"id":218064,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1111/j.1745-6584.2010.00730.x"},{"id":246044,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"48","issue":"5","noUsgsAuthors":false,"publicationDate":"2010-06-22","publicationStatus":"PW","scienceBaseUri":"505b8fe4e4b08c986b3191d6","contributors":{"authors":[{"text":"Hanson, R. 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Nitrate (NO3–) uptake rates inferred using the nutrient spiraling model underestimated the total NO3– mass loss by 82%, which was attributed to the exclusion of dispersion and transient storage. The transient storage model was more accurate with respect to the NO3– mass loss (±20%) and also demonstrated that uptake in the main channel was more significant than in storage zones. Conservative tracer fitting was unable to produce transport parameter estimates for a riffle-pool transition of the study reach, while forward modeling of solute transport using measured/scaled transport parameters matched conservative tracer breakthrough curves for all reaches. Additionally, solute exchange between the main channel and embayment surface storage zones was quantified using first-order theory. 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The primary objective was to determine spatial variability in the depth to the Hanford‐Ringold (H‐R) contact, an important lithologic boundary that limits vertical transport of groundwater along the river corridor. Resistivity and induced polarization (IP) measurements were performed along six survey lines parallel to the shore (each greater than 2.5 km in length), with a measurement recorded every 0.5–3.0 m depending on survey speed, resulting in approximately 65,000 measurements. The H‐R contact was clearly resolved in images of the normalized chargeability along the river corridor due to the large contrast in surface area (hence polarizability) of the granular material between the two lithologic units. Cross sections of the lithologic structure along the river corridor reveal a large variation in the thickness of the overlying Hanford unit (the aquifer through which contaminated groundwater discharges to the river) and clearly identify locations along the river corridor where the underlying Ringold unit is exposed to the riverbed. Knowing the distribution of the Hanford and Ringold units along the river corridor substantially improves the conceptual model for the hydrogeologic framework regulating U exchange between groundwater and Columbia River water relative to current models based on projections of data from boreholes on land into the river.
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Jr. 0000-0002-3558-243X jwlane@usgs.gov","orcid":"https://orcid.org/0000-0002-3558-243X","contributorId":189168,"corporation":false,"usgs":true,"family":"Lane","given":"John","suffix":"Jr.","email":"jwlane@usgs.gov","middleInitial":"W.","affiliations":[{"id":486,"text":"OGW Branch of Geophysics","active":true,"usgs":true},{"id":493,"text":"Office of Ground Water","active":true,"usgs":true}],"preferred":false,"id":720286,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Ward, Andy","contributorId":7184,"corporation":false,"usgs":true,"family":"Ward","given":"Andy","email":"","affiliations":[],"preferred":false,"id":720287,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Versteeg, Roelof J.","contributorId":73501,"corporation":false,"usgs":true,"family":"Versteeg","given":"Roelof","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":720290,"contributorType":{"id":1,"text":"Authors"},"rank":14}]}} ,{"id":70037623,"text":"70037623 - 2010 - Persistence of canine distemper virus in the Greater Yellowstone Ecosystem's carnivore community","interactions":[],"lastModifiedDate":"2018-10-17T16:40:58","indexId":"70037623","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1450,"text":"Ecological Applications","active":true,"publicationSubtype":{"id":10}},"title":"Persistence of canine distemper virus in the Greater Yellowstone Ecosystem's carnivore community","docAbstract":"Canine distemper virus (CDV) is an acute, highly immunizing pathogen that should require high densities and large populations of hosts for long-term persistence, yet CDV persists among terrestrial carnivores with small, patchily distributed groups. We used CDV in the Greater Yellowstone ecosystem's (GYE) wolves (Canis lupus) and coyotes (Canis latrans) as a case study for exploring how metapopulation structure, host demographics, and multi-host transmission affect the critical community size and spatial scale required for CDV persistence. We illustrate how host spatial connectivity and demographic turnover interact to affect both local epidemic dynamics, such as the length and variation in inter-epidemic periods, and pathogen persistence using stochastic, spatially explicit susceptible-exposed-infectious-recovered simulation models. Given the apparent absence of other known persistence mechanisms (e.g., a carrier or environmental state, densely populated host, chronic infection, or a vector), we suggest that CDV requires either large spatial scales or multi-host transmission for persistence. Current GYE wolf populations are probably too small to support endemic CDV. Coyotes are a plausible reservoir host, but CDV would still require 50 000-100 000 individuals for moderate persistence (>50% over 10 years), which would equate to an area of 1-3 times the size of the GYE (60000-200000 km2). Coyotes, and carnivores in general, are not uniformly distributed; therefore, this is probably a gross underestimate of the spatial scale of CDV persistence. However, the presence of a second competent host species can greatly increase the probability of long-term CDV persistence at much smaller spatial scales. Although no management of CDV is currently recommended for the GYE, wolf managers in the region should expect periodic but unpredictable CDV-related population declines as often as every 2-5 years. Awareness and monitoring of such outbreaks will allow corresponding adjustments in management activities such as regulated public harvest, creating a smooth transition to state wolf management and conservation after >30 years of being protected by the Endangered Species Act.
","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Ecological Applications","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","publisher":"Ecological Society of America","doi":"10.1890/09-1225.1","issn":"10510761","usgsCitation":"Almberg, E.S., Cross, P.C., and Smith, D., 2010, Persistence of canine distemper virus in the Greater Yellowstone Ecosystem's carnivore community: Ecological Applications, v. 20, no. 7, p. 2058-2074, https://doi.org/10.1890/09-1225.1.","productDescription":"17 p.","startPage":"2058","endPage":"2074","numberOfPages":"17","costCenters":[{"id":34983,"text":"Contaminant Biology Program","active":true,"usgs":true}],"links":[{"id":245923,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":217950,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1890/09-1225.1"}],"country":"United States","volume":"20","issue":"7","noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"505a76e5e4b0c8380cd78383","contributors":{"authors":[{"text":"Almberg, Emily S.","contributorId":207014,"corporation":false,"usgs":false,"family":"Almberg","given":"Emily","email":"","middleInitial":"S.","affiliations":[{"id":37431,"text":"Montana Fish, Wildlife and Parks","active":true,"usgs":false}],"preferred":false,"id":461970,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Cross, Paul C. 0000-0001-8045-5213 pcross@usgs.gov","orcid":"https://orcid.org/0000-0001-8045-5213","contributorId":2709,"corporation":false,"usgs":true,"family":"Cross","given":"Paul","email":"pcross@usgs.gov","middleInitial":"C.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":461971,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Smith, D.W.","contributorId":24726,"corporation":false,"usgs":true,"family":"Smith","given":"D.W.","email":"","affiliations":[],"preferred":false,"id":461969,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}} ,{"id":70037698,"text":"70037698 - 2010 - High tsunami frequency as a result of combined strike-slip faulting and coastal landslides","interactions":[],"lastModifiedDate":"2012-04-30T16:43:36","indexId":"70037698","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2845,"text":"Nature Geoscience","active":true,"publicationSubtype":{"id":10}},"title":"High tsunami frequency as a result of combined strike-slip faulting and coastal landslides","docAbstract":"Earthquakes on strike-slip faults can produce devastating natural hazards. However, because they consist predominantly of lateral motion, these faults are rarely associated with significant uplift or tsunami generation. And although submarine slides can generate tsunami, only a few per cent of all tsunami are believed to be triggered in this way. The 12 January Mw 7.0 Haiti earthquake exhibited primarily strike-slip motion but nevertheless generated a tsunami. Here we present data from a comprehensive field survey that covered the onshore and offshore area around the epicentre to document that modest uplift together with slope failure caused tsunamigenesis. Submarine landslides caused the most severe tsunami locally. Our analysis suggests that slide-generated tsunami occur an order-of-magnitude more frequently along the Gonave microplate than global estimates predict. Uplift was generated because of the earthquake?s location, where the Caribbean and Gonave microplates collide obliquely. The earthquake also caused liquefaction at several river deltas that prograde rapidly and are prone to failure. We conclude that coastal strike-slip fault systems such as the Enriquillog-Plantain Garden fault produce relief conducive to rapid sedimentation, erosion and slope failure, so that even modest predominantly strike-slip earthquakes can cause potentially catastrophic slide-generated tsunamig-a risk that is underestimated at present. ?? 2010 Macmillan Publishers Limited. All rights reserved.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Nature Geoscience","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1038/ngeo975","issn":"17520894","usgsCitation":"Hornbach, M., Braudy, N., Briggs, R., Cormier, M., Davis, M., Diebold, J., Dieudonne, N., Douilly, R., Frohlich, C., Gulick, S., Johnson, H.E., Mann, P., McHugh, C., Ryan-Mishkin, K., Prentice, C., Seeber, L., Sorlien, C., Steckler, M., Symithe, S., Taylor, F.W., and Templeton, J., 2010, High tsunami frequency as a result of combined strike-slip faulting and coastal landslides: Nature Geoscience, v. 3, no. 11, p. 783-788, https://doi.org/10.1038/ngeo975.","startPage":"783","endPage":"788","numberOfPages":"6","costCenters":[],"links":[{"id":218041,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1038/ngeo975"},{"id":246019,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"3","issue":"11","noUsgsAuthors":false,"publicationDate":"2010-10-10","publicationStatus":"PW","scienceBaseUri":"505a30d8e4b0c8380cd5d9cf","contributors":{"authors":[{"text":"Hornbach, M.J.","contributorId":94104,"corporation":false,"usgs":true,"family":"Hornbach","given":"M.J.","email":"","affiliations":[],"preferred":false,"id":462371,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Braudy, N.","contributorId":70628,"corporation":false,"usgs":true,"family":"Braudy","given":"N.","affiliations":[],"preferred":false,"id":462365,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Briggs, R.W.","contributorId":97317,"corporation":false,"usgs":true,"family":"Briggs","given":"R.W.","email":"","affiliations":[],"preferred":false,"id":462373,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Cormier, M.-H.","contributorId":30856,"corporation":false,"usgs":true,"family":"Cormier","given":"M.-H.","email":"","affiliations":[],"preferred":false,"id":462357,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Davis, M.B.","contributorId":45809,"corporation":false,"usgs":true,"family":"Davis","given":"M.B.","email":"","affiliations":[],"preferred":false,"id":462360,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Diebold, J.B.","contributorId":74994,"corporation":false,"usgs":true,"family":"Diebold","given":"J.B.","affiliations":[],"preferred":false,"id":462366,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Dieudonne, N.","contributorId":78180,"corporation":false,"usgs":true,"family":"Dieudonne","given":"N.","affiliations":[],"preferred":false,"id":462368,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Douilly, R.","contributorId":92093,"corporation":false,"usgs":true,"family":"Douilly","given":"R.","affiliations":[],"preferred":false,"id":462369,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Frohlich, C.","contributorId":30400,"corporation":false,"usgs":true,"family":"Frohlich","given":"C.","email":"","affiliations":[],"preferred":false,"id":462356,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Gulick, S.P.S.","contributorId":75791,"corporation":false,"usgs":true,"family":"Gulick","given":"S.P.S.","email":"","affiliations":[],"preferred":false,"id":462367,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Johnson, H. E. III","contributorId":33561,"corporation":false,"usgs":true,"family":"Johnson","given":"H.","suffix":"III","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":462358,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Mann, P.","contributorId":55167,"corporation":false,"usgs":true,"family":"Mann","given":"P.","email":"","affiliations":[],"preferred":false,"id":462361,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"McHugh, C.","contributorId":107540,"corporation":false,"usgs":true,"family":"McHugh","given":"C.","email":"","affiliations":[],"preferred":false,"id":462374,"contributorType":{"id":1,"text":"Authors"},"rank":13},{"text":"Ryan-Mishkin, K.","contributorId":55246,"corporation":false,"usgs":true,"family":"Ryan-Mishkin","given":"K.","affiliations":[],"preferred":false,"id":462362,"contributorType":{"id":1,"text":"Authors"},"rank":14},{"text":"Prentice, C.S.","contributorId":56667,"corporation":false,"usgs":true,"family":"Prentice","given":"C.S.","email":"","affiliations":[],"preferred":false,"id":462363,"contributorType":{"id":1,"text":"Authors"},"rank":15},{"text":"Seeber, L.","contributorId":37329,"corporation":false,"usgs":true,"family":"Seeber","given":"L.","email":"","affiliations":[],"preferred":false,"id":462359,"contributorType":{"id":1,"text":"Authors"},"rank":16},{"text":"Sorlien, C.C.","contributorId":94089,"corporation":false,"usgs":true,"family":"Sorlien","given":"C.C.","email":"","affiliations":[],"preferred":false,"id":462370,"contributorType":{"id":1,"text":"Authors"},"rank":17},{"text":"Steckler, M.S.","contributorId":26169,"corporation":false,"usgs":true,"family":"Steckler","given":"M.S.","email":"","affiliations":[],"preferred":false,"id":462354,"contributorType":{"id":1,"text":"Authors"},"rank":18},{"text":"Symithe, S.J.","contributorId":94141,"corporation":false,"usgs":true,"family":"Symithe","given":"S.J.","affiliations":[],"preferred":false,"id":462372,"contributorType":{"id":1,"text":"Authors"},"rank":19},{"text":"Taylor, F. W.","contributorId":57598,"corporation":false,"usgs":false,"family":"Taylor","given":"F.","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":462364,"contributorType":{"id":1,"text":"Authors"},"rank":20},{"text":"Templeton, J.","contributorId":27298,"corporation":false,"usgs":true,"family":"Templeton","given":"J.","email":"","affiliations":[],"preferred":false,"id":462355,"contributorType":{"id":1,"text":"Authors"},"rank":21}]}} ,{"id":70034148,"text":"70034148 - 2010 - Using occupancy models to understand the distribution of an amphibian pathogen, Batrachochytrium dendrobatidis","interactions":[],"lastModifiedDate":"2018-01-23T16:22:19","indexId":"70034148","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1450,"text":"Ecological Applications","active":true,"publicationSubtype":{"id":10}},"title":"Using occupancy models to understand the distribution of an amphibian pathogen, Batrachochytrium dendrobatidis","docAbstract":"Batrachochytrium dendrobatidis is a fungal pathogen that is receiving attention around the world for its role in amphibian declines. Study of its occurrence patterns is hampered by false negatives: the failure to detect the pathogen when it is present. Occupancy models are a useful but currently underutilized tool for analyzing detection data when the probability of detecting a species is <1. We use occupancy models to evaluate hypotheses concerning the occurrence and prevalence of B. dendrobatidis and discuss how this application differs from a conventional occupancy approach. We found that the probability of detecting the pathogen, conditional on presence of the pathogen in the anuran population, was related to amphibian development stage, day of the year, elevation, and human activities. Batrachochytrium dendrobatidis was found throughout our study area but was only estimated to occur in 53.4% of 78 populations of native amphibians and 66.4% of 40 populations of nonnative Rana catesbeiana tested. We found little evidence to support any spatial hypotheses concerning the probability that the pathogen occurs in a population, but did find evidence of some taxonomic variation. We discuss the interpretation of occupancy model parameters, when, unlike a conventional occupancy application, the number of potential samples or observations is finite.
","language":"English","publisher":"Ecological Society of America","doi":"10.1890/08-2319.1","issn":"10510761","usgsCitation":"Adams, M.J., Chelgren, N., Reinitz, D.M., Cole, R.A., Rachowicz, L., Galvan, S., McCreary, B., Pearl, C.A., Bailey, L.L., Bettaso, J.B., Bull, E.L., and Leu, M., 2010, Using occupancy models to understand the distribution of an amphibian pathogen, Batrachochytrium dendrobatidis: Ecological Applications, v. 20, no. 1, p. 289-302, https://doi.org/10.1890/08-2319.1.","productDescription":"14 p.","startPage":"289","endPage":"302","numberOfPages":"14","onlineOnly":"N","additionalOnlineFiles":"N","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true},{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":244577,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":216692,"rank":9999,"type":{"id":10,"text":"Digital Object 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Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":444330,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Bull, Evelyn L.","contributorId":31104,"corporation":false,"usgs":true,"family":"Bull","given":"Evelyn","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":444331,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Leu, Matthias","contributorId":103976,"corporation":false,"usgs":true,"family":"Leu","given":"Matthias","affiliations":[{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true}],"preferred":false,"id":444324,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}} ,{"id":70037627,"text":"70037627 - 2010 - Surface-wave potential for triggering tectonic (nonvolcanic) tremor","interactions":[],"lastModifiedDate":"2019-05-30T12:31:36","indexId":"70037627","displayToPublicDate":"2010-01-01T00:00:00","publicationYear":"2010","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1135,"text":"Bulletin of the Seismological Society of America","onlineIssn":"1943-3573","printIssn":"0037-1106","active":true,"publicationSubtype":{"id":10}},"title":"Surface-wave potential for triggering tectonic (nonvolcanic) tremor","docAbstract":"Source processes commonly posed to explain instances of remote dynamic triggering of tectonic (nonvolcanic) tremor by surface waves include frictional failure and various modes of fluid activation. The relative potential for Love- and Rayleigh-wave dynamic stresses to trigger tectonic tremor through failure on critically stressed thrust and vertical strike-slip faults under the Coulomb-Griffith failure criteria as a function of incidence angle is anticorrelated over the 15- to 30-km-depth range that hosts tectonic tremor. Love-wave potential is high for strike-parallel incidence on low-angle reverse faults and null for strike-normal incidence; the opposite holds for Rayleigh waves. Love-wave potential is high for both strike-parallel and strike-normal incidence on vertical, strike-slip faults and minimal for ~45?? incidence angles. The opposite holds for Rayleigh waves. This pattern is consistent with documented instances of tremor triggered by Love waves incident on the Cascadia mega-thrust and the San Andreas fault (SAF) in central California resulting from shear failure on weak faults (apparent friction, ????? 0.2). However, documented instances of tremor triggered by surface waves with strike-parallel incidence along the Nankai megathrust beneath Shikoku, Japan, is associated primarily with Rayleigh waves. This is consistent with the tremor bursts resulting from mixed-mode failure (crack opening and shear failure) facilitated by near-lithostatic ambient pore pressure, low differential stress, with a moderate friction coefficient (?? ~ 0.6) on the Nankai subduction interface. Rayleigh-wave dilatational stress is relatively weak at tectonic tremor source depths and seems unlikely to contribute significantly to the triggering process, except perhaps for an indirect role on the SAF in sustaining tremor into the Rayleigh-wave coda that was initially triggered by Love waves.","largerWorkType":{"id":2,"text":"Article"},"largerWorkTitle":"Bulletin of the Seismological Society of America","largerWorkSubtype":{"id":10,"text":"Journal Article"},"language":"English","doi":"10.1785/0120090362","issn":"00371106","usgsCitation":"Hill, D., 2010, Surface-wave potential for triggering tectonic (nonvolcanic) tremor: Bulletin of the Seismological Society of America, v. 100, no. 5 A, p. 1859-1878, https://doi.org/10.1785/0120090362.","startPage":"1859","endPage":"1878","numberOfPages":"20","costCenters":[{"id":615,"text":"Volcano Hazards Program","active":true,"usgs":true}],"links":[{"id":217992,"rank":9999,"type":{"id":10,"text":"Digital Object Identifier"},"url":"https://dx.doi.org/10.1785/0120090362"},{"id":245967,"rank":0,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"100","issue":"5 A","noUsgsAuthors":false,"publicationDate":"2010-09-20","publicationStatus":"PW","scienceBaseUri":"505ba1b6e4b08c986b31f273","contributors":{"authors":[{"text":"Hill, D.P.","contributorId":27432,"corporation":false,"usgs":true,"family":"Hill","given":"D.P.","email":"","affiliations":[],"preferred":false,"id":461991,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}} ]}