The Camas National Wildlife Refuge (Refuge) in eastern Idaho, established in 1937, contains wetlands, ponds, and wet meadows that are essential resting and feeding habitat for migratory birds and nesting habitat for waterfowl. Initially, natural sources of water supported these habitats. However, during the past few decades, changes in climate and surrounding land use have altered and reduced natural groundwater and surface-water inflows, resulting in a 5-meter decline in the water table and an earlier, and more frequent, occurrence of no flow in Camas Creek at the Refuge. Due to these changes in water availability, water management that includes extensive groundwater pumping is now necessary to maintain the wetlands, ponds, and wet meadows.
These water management activities have proven to be inefficient and expensive, and the Refuge is seeking alternative water-management options that are more efficient and less expensive. More efficient water management at the Refuge may be possible through knowledge of the seepage rates from ditches, ponds, and lakes at the Refuge. With this knowledge, water-management efficiency may be improved by natural means through selective use of water bodies with the smallest seepage rates or through engineering efforts to minimize seepage losses from water bodies with the largest seepage rates.
The U.S. Geological Survey performed field studies in 2015 and 2016 to estimate seepage rates for selected ditches, ponds, and lakes at the Refuge. Estimated seepage rates from ponds and lakes ranged over an order of magnitude, from 3.4 ± 0.2 to 103.0 ± 0.5 mm/d, with larger seepage rates calculated for Big Pond and Redhead Pond, intermediate seepage rates calculated for Two-way Pond, and smaller seepages rates calculated for the south arm of Sandhole Lake. Estimated seepage losses from two reaches of Main Diversion Ditch were 21 ± 2 and 17 ± 2 percent/km. These losses represent seepage rates of about 890 and 860 mm/d, which are one- to two-orders-of-magnitude larger than seepage rates from the ponds and lake.
The depth-integrated vertical hydraulic conductivity (Kv) for sediment underlying the ponds and lake was the primary control of seepage rates. The Kv's were 30 and 34 m/d for Big Pond, 14 and 18 m/d for Toomey Pond, 8 and 10 m/d for Two-way Pond, and 47 m/d for the north arm of Sandhole Lake.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.jenvman.2017.02.063","usgsCitation":"Rattray, G.W., 2017, Estimated seepage rates from selected ditches, ponds, and lakes at the Camas National Wildlife Refuge, eastern Idaho: Journal of Environmental Management, v. 203, no. 1, p. 578-591, https://doi.org/10.1016/j.jenvman.2017.02.063.","productDescription":"14 p.","startPage":"578","endPage":"591","ipdsId":"IP-083400","costCenters":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"links":[{"id":341508,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Idaho","otherGeospatial":"Camas National Wildlife Refuge","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -112.24765777587889,\n 43.989603470452224\n ],\n [\n -112.2531509399414,\n 43.989603470452224\n ],\n [\n -112.25349426269531,\n 43.98589821991874\n ],\n [\n -112.2637939453125,\n 43.985774707584255\n ],\n [\n -112.26362228393555,\n 43.98206921804778\n ],\n [\n -112.25349426269531,\n 43.98219273809204\n ],\n [\n -112.2531509399414,\n 43.97873407971019\n ],\n [\n -112.25812911987305,\n 43.97836349721919\n ],\n [\n -112.25812911987305,\n 43.971074904863265\n ],\n [\n -112.26430892944336,\n 43.9711984477796\n ],\n [\n -112.2670555114746,\n 43.968356895686235\n ],\n [\n -112.2670555114746,\n 43.96551520764685\n ],\n [\n -112.26808547973633,\n 43.96514454266273\n ],\n [\n -112.27117538452148,\n 43.965268097914425\n ],\n [\n -112.27254867553711,\n 43.96625653067646\n ],\n [\n -112.27666854858398,\n 43.96613297748065\n ],\n [\n -112.27855682373045,\n 43.96477387536573\n ],\n [\n -112.29263305664062,\n 43.96514454266273\n ],\n [\n -112.29246139526367,\n 43.9576071863508\n ],\n [\n -112.30327606201172,\n 43.95773075727856\n ],\n [\n -112.30293273925781,\n 43.94302401260679\n ],\n [\n -112.29297637939453,\n 43.94277680933283\n ],\n [\n -112.29297637939453,\n 43.92843726069337\n ],\n [\n -112.3080825805664,\n 43.92843726069337\n ],\n [\n -112.3077392578125,\n 43.92497547227071\n ],\n [\n -112.31306076049803,\n 43.924851833243785\n ],\n [\n -112.31254577636719,\n 43.90655042390404\n ],\n [\n -112.30258941650389,\n 43.90667410096243\n ],\n [\n -112.30241775512695,\n 43.91038429322458\n ],\n [\n -112.28799819946289,\n 43.91026062387522\n ],\n [\n -112.28765487670898,\n 43.90667410096243\n ],\n [\n -112.28284835815428,\n 43.90655042390404\n ],\n [\n -112.28216171264647,\n 43.90296367743057\n ],\n [\n -112.27752685546875,\n 43.90321104619439\n ],\n [\n -112.2776985168457,\n 43.89962409851726\n ],\n [\n -112.24662780761719,\n 43.89925302263017\n ],\n [\n -112.24679946899414,\n 43.917309366668476\n ],\n [\n -112.24250793457031,\n 43.917309366668476\n ],\n [\n -112.2421646118164,\n 43.921018895951235\n ],\n [\n -112.22705841064453,\n 43.92077160119423\n ],\n [\n -112.22705841064453,\n 43.92769546584876\n ],\n [\n -112.2169303894043,\n 43.92806636442745\n ],\n [\n -112.2169303894043,\n 43.94079914613631\n ],\n [\n -112.22328186035156,\n 43.957483615166055\n ],\n [\n -112.24782943725586,\n 43.957854327949335\n ],\n [\n -112.24731445312499,\n 43.9788576066932\n ],\n [\n -112.24285125732422,\n 43.97836349721919\n ],\n [\n -112.24267959594727,\n 43.98206921804778\n ],\n [\n -112.22963333129883,\n 43.98206921804778\n ],\n [\n -112.23066329956055,\n 43.99306149560464\n ],\n [\n -112.24782943725586,\n 43.99306149560464\n ],\n [\n -112.24765777587889,\n 43.989603470452224\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"203","issue":"1","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"59200449e4b0ac16dbdeb77c","contributors":{"authors":[{"text":"Rattray, Gordon W. 0000-0002-1690-3218 grattray@usgs.gov","orcid":"https://orcid.org/0000-0002-1690-3218","contributorId":2521,"corporation":false,"usgs":true,"family":"Rattray","given":"Gordon","email":"grattray@usgs.gov","middleInitial":"W.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":true,"id":695642,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}} ,{"id":70187784,"text":"70187784 - 2017 - Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert","interactions":[],"lastModifiedDate":"2017-07-10T14:51:22","indexId":"70187784","displayToPublicDate":"2017-05-19T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2774,"text":"Molecular Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert","docAbstract":"Genomic responses to habitat conversion can be rapid, providing wildlife managers with time-limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near-complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive genetic data sets are lacking for nearly all species in the region. To fill this knowledge gap, we studied the rangewide population structure of the endangered blunt-nosed leopard lizard Gambelia sila, a San Joaquin Desert endemic, using restriction site-associated DNA (RAD), microsatellite and mtDNA data to test whether admixture patterns and estimates of effective migration surfaces (EEMS) can identify land areas with high population connectivity prior to the conversion of native xeric habitats. Clustering and phylogenetic analyses indicate a recent shared history between numerous isolated populations and EEMS reveals latent signals of corridors and barriers to gene flow over areas now replaced by agriculture and urbanization. Conflicting histories between the mtDNA and nuclear genomes are consistent with hybridization with the sister species G. wislizenii, raising important questions about where legal protection should end at the southern range limit of G. sila. Comparative analysis of different data sets also adds to a growing list of advantages in using RAD loci for genetic studies of rare species. We demonstrate how the results of this work can serve as an evolutionary guidance tool for managing endemic, arid-adapted taxa in one of the world's most compromised landscapes.
","language":"English","publisher":"Wiley","doi":"10.1111/mec.14125","usgsCitation":"Richmond, J.Q., Wood, D.A., Westphal, M.F., Vandergast, A.G., Leache, A.D., Saslaw, L., Butterfield, H.S., and Fisher, R.N., 2017, Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert: Molecular Ecology, v. 26, no. 14, p. 3618-3635, https://doi.org/10.1111/mec.14125.","productDescription":"18 p.","startPage":"3618","endPage":"3635","ipdsId":"IP-076736","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":461579,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/mec.14125","text":"Publisher Index Page"},{"id":341498,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"San Joaquin Desert","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -121.1517333984375,\n 34.619647359797185\n ],\n [\n -117.82287597656249,\n 34.619647359797185\n ],\n [\n -117.82287597656249,\n 37.01571219880126\n ],\n [\n -121.1517333984375,\n 37.01571219880126\n ],\n [\n -121.1517333984375,\n 34.619647359797185\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"26","issue":"14","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-02","publicationStatus":"PW","scienceBaseUri":"5920044ae4b0ac16dbdeb784","contributors":{"authors":[{"text":"Richmond, Jonathan Q. 0000-0001-9398-4894 jrichmond@usgs.gov","orcid":"https://orcid.org/0000-0001-9398-4894","contributorId":5400,"corporation":false,"usgs":true,"family":"Richmond","given":"Jonathan","email":"jrichmond@usgs.gov","middleInitial":"Q.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695609,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wood, Dustin A. 0000-0002-7668-9911 dawood@usgs.gov","orcid":"https://orcid.org/0000-0002-7668-9911","contributorId":4179,"corporation":false,"usgs":true,"family":"Wood","given":"Dustin","email":"dawood@usgs.gov","middleInitial":"A.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695610,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Westphal, Michael F.","contributorId":192139,"corporation":false,"usgs":false,"family":"Westphal","given":"Michael","email":"","middleInitial":"F.","affiliations":[],"preferred":false,"id":695611,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Vandergast, Amy G. 0000-0002-7835-6571 avandergast@usgs.gov","orcid":"https://orcid.org/0000-0002-7835-6571","contributorId":3963,"corporation":false,"usgs":true,"family":"Vandergast","given":"Amy","email":"avandergast@usgs.gov","middleInitial":"G.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695612,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Leache, Adam D.","contributorId":192142,"corporation":false,"usgs":false,"family":"Leache","given":"Adam","email":"","middleInitial":"D.","affiliations":[],"preferred":false,"id":695615,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Saslaw, Lawrence","contributorId":192140,"corporation":false,"usgs":false,"family":"Saslaw","given":"Lawrence","email":"","affiliations":[],"preferred":false,"id":695613,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Butterfield, H. Scott","contributorId":192141,"corporation":false,"usgs":false,"family":"Butterfield","given":"H.","email":"","middleInitial":"Scott","affiliations":[],"preferred":false,"id":695614,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Fisher, Robert N. 0000-0002-2956-3240 rfisher@usgs.gov","orcid":"https://orcid.org/0000-0002-2956-3240","contributorId":1529,"corporation":false,"usgs":true,"family":"Fisher","given":"Robert","email":"rfisher@usgs.gov","middleInitial":"N.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695608,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}} ,{"id":70139441,"text":"70139441 - 2017 - Map projections and the Internet","interactions":[],"lastModifiedDate":"2020-08-20T19:28:58.81488","indexId":"70139441","displayToPublicDate":"2017-05-19T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"chapter":"4","title":"Map projections and the Internet","docAbstract":"The field of map projections can be described as mathematical, static, and challenging. However, this description is evolving in concert with the development of the Internet. The Internet has enabled new outlets for software applications, learning, and interaction with and about map projections . This chapter examines specific ways in which the Internet has moved map projections from a relatively obscure paper-based setting to a more engaging and accessible online environment. After a brief overview of map projections, this chapter discusses four perspectives on how map projections have been integrated into the Internet. First, map projections and their role in web maps and mapping services is examined. Second, an overview of online atlases and the map projections chosen for their maps is presented. Third, new programming languages and code libraries that enable map projections to be included in mapping applications are reviewed. Fourth, the Internet has facilitated map projection education and research especially with the map reader’s comprehension and understanding of complex topics like map projection distortion is discussed.
","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Choosing a map projection","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","publisher":"Springer","publisherLocation":"Cham, Switzerland","doi":"10.1007/978-3-319-51835-0_4","isbn":"978-3-319-51834-3","usgsCitation":"Kessler, F., Battersby, S.E., Finn, M.P., and Clarke, K., 2017, Map projections and the Internet, chap. 4 of Choosing a map projection, p. 117-148, https://doi.org/10.1007/978-3-319-51835-0_4.","productDescription":"32 p.","startPage":"117","endPage":"148","ipdsId":"IP-062186","costCenters":[{"id":5047,"text":"NGTOC Denver","active":true,"usgs":true}],"links":[{"id":341515,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2017-04-05","publicationStatus":"PW","scienceBaseUri":"5920044ae4b0ac16dbdeb787","contributors":{"authors":[{"text":"Kessler, Fritz","contributorId":138942,"corporation":false,"usgs":false,"family":"Kessler","given":"Fritz","email":"","affiliations":[{"id":12588,"text":"Frostburg State University/ Department of Geography","active":true,"usgs":false}],"preferred":false,"id":539399,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Battersby, Sarah E.","contributorId":138943,"corporation":false,"usgs":false,"family":"Battersby","given":"Sarah","email":"","middleInitial":"E.","affiliations":[{"id":12589,"text":"University of South Carolina/ Department of Geography","active":true,"usgs":false}],"preferred":false,"id":539400,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Finn, Michael P. 0000-0003-0415-2194 mfinn@usgs.gov","orcid":"https://orcid.org/0000-0003-0415-2194","contributorId":2657,"corporation":false,"usgs":true,"family":"Finn","given":"Michael","email":"mfinn@usgs.gov","middleInitial":"P.","affiliations":[{"id":5074,"text":"Center for Geospatial Information Science (CEGIS)","active":true,"usgs":true},{"id":5047,"text":"NGTOC Denver","active":true,"usgs":true}],"preferred":true,"id":539398,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Clarke, Keith","contributorId":13861,"corporation":false,"usgs":true,"family":"Clarke","given":"Keith","affiliations":[],"preferred":false,"id":539401,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70187797,"text":"70187797 - 2017 - Thermal effect of climate change on groundwater-fed ecosystems","interactions":[],"lastModifiedDate":"2017-11-27T13:53:53","indexId":"70187797","displayToPublicDate":"2017-05-19T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3722,"text":"Water Resources Research","onlineIssn":"1944-7973","printIssn":"0043-1397","active":true,"publicationSubtype":{"id":10}},"title":"Thermal effect of climate change on groundwater-fed ecosystems","docAbstract":"Groundwater temperature changes will lag surface temperature changes from a changing climate. Steady state solutions of the heat-transport equations are used to identify key processes that control the long-term thermal response of springs and other groundwater discharge to climate change, in particular changes in (1) groundwater recharge rate and temperature and (2) land-surface temperature transmitted through the vadose zone. Transient solutions are developed to estimate the time required for new thermal signals to arrive at ecosystems. The solution is applied to the volcanic Medicine Lake highlands, California, USA, and associated springs complexes that host groundwater-dependent ecosystems. In this system, upper basin groundwater temperatures are strongly affected only by recharge conditions. However, as the vadose zone thins away from the highlands, changes in the average annual land-surface temperature also influence groundwater temperatures. Transient response to temperature change depends on both the conductive time scale and the rate at which recharge delivers heat. Most of the thermal response of groundwater at high elevations will occur within 20 years of a shift in recharge temperatures, but the large lower elevation springs will respond more slowly, with about half of the conductive response occurring within the first 20 years and about half of the advective response to higher recharge temperatures occurring in approximately 60 years.
","language":"English","publisher":"American Geophysical Union","doi":"10.1002/2016WR020007","usgsCitation":"Burns, E.R., Zhu, Y., Zhan, H., Manga, M., Williams, C.F., Ingebritsen, S.E., and Dunham, J.B., 2017, Thermal effect of climate change on groundwater-fed ecosystems: Water Resources Research, v. 53, no. 4, p. 3341-3351, https://doi.org/10.1002/2016WR020007.","productDescription":"11 p.","startPage":"3341","endPage":"3351","ipdsId":"IP-078258","costCenters":[{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true},{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"links":[{"id":461585,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/2016wr020007","text":"Publisher Index Page"},{"id":341520,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Medicine Lake highlands","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -122.283333,\n 41.766667\n ],\n [\n -121.283333,\n 41.766667\n ],\n [\n -121.283333,\n 40.9\n ],\n [\n -122.283333,\n 40.9\n ],\n [\n -122.283333,\n 41.766667\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"53","issue":"4","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2017-04-24","publicationStatus":"PW","scienceBaseUri":"59200447e4b0ac16dbdeb776","contributors":{"authors":[{"text":"Burns, Erick R. 0000-0002-1747-0506 eburns@usgs.gov","orcid":"https://orcid.org/0000-0002-1747-0506","contributorId":192154,"corporation":false,"usgs":true,"family":"Burns","given":"Erick","email":"eburns@usgs.gov","middleInitial":"R.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true},{"id":518,"text":"Oregon Water Science Center","active":true,"usgs":true}],"preferred":true,"id":695657,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Zhu, Yonghui 0000-0002-6608-5188","orcid":"https://orcid.org/0000-0002-6608-5188","contributorId":192155,"corporation":false,"usgs":false,"family":"Zhu","given":"Yonghui","email":"","affiliations":[],"preferred":false,"id":695658,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Zhan, Hongbin 0000-0003-2060-4904","orcid":"https://orcid.org/0000-0003-2060-4904","contributorId":192156,"corporation":false,"usgs":false,"family":"Zhan","given":"Hongbin","email":"","affiliations":[],"preferred":false,"id":695659,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Manga, Michael","contributorId":145531,"corporation":false,"usgs":false,"family":"Manga","given":"Michael","affiliations":[{"id":6609,"text":"UC Berkeley","active":true,"usgs":false}],"preferred":false,"id":695660,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Williams, Colin F. 0000-0003-2196-5496 colin@usgs.gov","orcid":"https://orcid.org/0000-0003-2196-5496","contributorId":274,"corporation":false,"usgs":true,"family":"Williams","given":"Colin","email":"colin@usgs.gov","middleInitial":"F.","affiliations":[{"id":312,"text":"Geology, Minerals, Energy, and Geophysics Science Center","active":true,"usgs":true}],"preferred":true,"id":695661,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Ingebritsen, Steven E. 0000-0001-6917-9369 seingebr@usgs.gov","orcid":"https://orcid.org/0000-0001-6917-9369","contributorId":818,"corporation":false,"usgs":true,"family":"Ingebritsen","given":"Steven","email":"seingebr@usgs.gov","middleInitial":"E.","affiliations":[{"id":617,"text":"Volcano Science Center","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":695662,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Dunham, Jason B. 0000-0002-6268-0633 jdunham@usgs.gov","orcid":"https://orcid.org/0000-0002-6268-0633","contributorId":147808,"corporation":false,"usgs":true,"family":"Dunham","given":"Jason","email":"jdunham@usgs.gov","middleInitial":"B.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true},{"id":289,"text":"Forest and Rangeland Ecosys Science Center","active":true,"usgs":true},{"id":290,"text":"Forest and Rangeland Ecosystem Science Center","active":false,"usgs":true}],"preferred":true,"id":695663,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}} ,{"id":70187794,"text":"70187794 - 2017 - Evaluating the impact of irrigation on surface water – groundwater interaction and stream temperature in an agricultural watershed","interactions":[],"lastModifiedDate":"2017-05-19T13:36:19","indexId":"70187794","displayToPublicDate":"2017-05-19T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3352,"text":"Science of the Total Environment","active":true,"publicationSubtype":{"id":10}},"title":"Evaluating the impact of irrigation on surface water – groundwater interaction and stream temperature in an agricultural watershed","docAbstract":"Changes in groundwater discharge to streams caused by irrigation practices can influence stream temperature. Observations along two currently flood-irrigated reaches in the 640-square-kilometer upper Smith River watershed, an important agricultural and recreational fishing area in west-central Montana, showed a downstream temperature decrease resulting from groundwater discharge to the stream. A watershed-scale coupled surface water and groundwater flow model was used to examine changes in streamflow, groundwater discharge to the stream and stream temperature resulting from irrigation practices. The upper Smith River watershed was used to develop the model framework including watershed climate, topography, hydrography, vegetation, soil properties and current irrigation practices. Model results were used to compare watershed streamflow, groundwater recharge, and groundwater discharge to the stream for three scenarios: natural, pre-irrigation conditions (PreIrr); current irrigation practices involving mainly stream diversion for flood and sprinkler irrigation (IrrCurrent); and a hypothetical scenario with only groundwater supplying sprinkler irrigation (IrrGW). Irrigation increased groundwater recharge relative to natural PreIrr conditions because not all applied water was removed by crop evapotranspiration. Groundwater storage and groundwater discharge to the stream increased relative to natural PreIrr conditions when the source of irrigation water was mainly stream diversion as in the IrrCurrent scenario. The hypothetical IrrGW scenario, in which groundwater withdrawals were the sole source of irrigation water, resulted in widespread lowering of the water table and associated decreases in groundwater storage and groundwater discharge to the stream. A mixing analysis using model predicted groundwater discharge along the reaches suggests that stream diversion and flood irrigation, represented in the IrrCurrent scenario, has led to cooling of stream temperatures relative to natural PreIrr conditions improving fish thermal habitat. However, the decrease in groundwater discharge in the IrrGW scenario resulting from large-scale groundwater withdrawal for irrigation led to warmer than natural stream temperatures and possible degradation of fish habitat.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.scitotenv.2017.04.205","usgsCitation":"Essaid, H.I., and Caldwell, R.R., 2017, Evaluating the impact of irrigation on surface water – groundwater interaction and stream temperature in an agricultural watershed: Science of the Total Environment, v. 599-600, p. 581-596, https://doi.org/10.1016/j.scitotenv.2017.04.205.","productDescription":"16 p.","startPage":"581","endPage":"596","ipdsId":"IP-083683","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"links":[{"id":469836,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.scitotenv.2017.04.205","text":"Publisher Index Page"},{"id":341512,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Montana","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -111.324462890625,\n 46.027481852486645\n ],\n [\n -110.32470703125,\n 46.027481852486645\n ],\n [\n -110.32470703125,\n 46.73986059969267\n ],\n [\n -111.324462890625,\n 46.73986059969267\n ],\n [\n -111.324462890625,\n 46.027481852486645\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"599-600","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"59200448e4b0ac16dbdeb77a","contributors":{"authors":[{"text":"Essaid, Hedeff I. 0000-0003-0154-8628 hiessaid@usgs.gov","orcid":"https://orcid.org/0000-0003-0154-8628","contributorId":2284,"corporation":false,"usgs":true,"family":"Essaid","given":"Hedeff","email":"hiessaid@usgs.gov","middleInitial":"I.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":695649,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Caldwell, Rodney R. 0000-0002-2588-715X caldwell@usgs.gov","orcid":"https://orcid.org/0000-0002-2588-715X","contributorId":2577,"corporation":false,"usgs":true,"family":"Caldwell","given":"Rodney","email":"caldwell@usgs.gov","middleInitial":"R.","affiliations":[{"id":685,"text":"Wyoming-Montana Water Science Center","active":false,"usgs":true}],"preferred":true,"id":695650,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70182251,"text":"ofr20171023 - 2017 - Estimates of immediate effects on world markets of a hypothetical disruption to Russia’s supply of six mineral commodities","interactions":[],"lastModifiedDate":"2017-05-18T12:55:15","indexId":"ofr20171023","displayToPublicDate":"2017-05-18T13:15:00","publicationYear":"2017","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":330,"text":"Open-File Report","code":"OFR","onlineIssn":"2331-1258","printIssn":"0196-1497","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2017-1023","title":"Estimates of immediate effects on world markets of a hypothetical disruption to Russia’s supply of six mineral commodities","docAbstract":"The potential immediate effects of a hypothetical shock to Russia’s supply of selected mineral commodities on the world market and on individual countries were determined and monetized (in 2014 U.S. dollars). The mineral commodities considered were aluminum (refined primary), nickel (refined primary), palladium (refined) and platinum (refined), potash, and titanium (mill products), and the regions and countries of primary interest were the United States, the European Union (EU–28), and China. The shock is assumed to have infinite duration, but only the immediate effects, those limited by a 1-year period, are considered.
A methodology for computing and monetizing the potential impacts was developed. Then the data pertaining to all six mineral commodities were collected and the most likely effects were computed. Because of the uncertainties associated with some of the data, sensitivity analyses were conducted to confirm the validity of the results.
Results indicate that the impact on the United States arising from a shock to Russia’s supply, in terms of the value of net exports, would range from a gain of \\$336 million for titanium mill products to a loss of \\$237 million for potash; thus, the overall effect of a supply shock is likely to be quite modest. The study also demonstrates that, taken alone, Russia’s share in the world production of a particular commodity is not necessarily indicative of the size of potential impacts resulting from a supply shock; other factors, such as prices, domestic production, and the structure of international commodity flows were found to be important as well.
","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/ofr20171023","usgsCitation":"Safirova, Elena, Barry, J.J., Hastorun, Sinan, Matos, G.R., and Perez, A.A., with contributions from Bedinger, G.M., Bray, E.L., Jasinski, S.M., Kuck, P.H., and Loferski, P.J., 2017, Estimates of immediate effects on world markets of a hypothetical disruption to Russia’s supply of six mineral commodities: U.S. Geological Survey Open-File Report 2017–1023, 22 p., https://doi.org/10.3133/ofr20171023.","productDescription":"vi, 22 p.","numberOfPages":"32","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-068616","costCenters":[{"id":432,"text":"National Minerals Information Center","active":true,"usgs":true}],"links":[{"id":340045,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/of/2017/1023/coverthb.jpg"},{"id":340046,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/of/2017/1023/ofr20171023.pdf","text":"Report","size":"390 KB","linkFileType":{"id":1,"text":"pdf"},"description":"OFR 2017-1023"}],"contact":"National Minerals Information Center
U.S. Geological Survey
12201 Sunrise Valley Drive
Reston, VA 20192
Shaded coffee plantations are of conservation value for many taxa, particularly for resident avifauna in the face of extensive landscape changes. Yet, little is known about the value of coffee plantations for amphibians because there are scant demographic data to index their value among species with different habitat preferences. We estimated the probability of occupancy of three frog species: Eleutherodactylus wightmanae, a forest species; E. brittoni, a grassland species; and E. antillensis, an open habitat species. Occupancy was estimated in sun and shaded plantations, and in secondary forest, in the west-central mountains of Puerto Rico. We also estimated the probability that a survey station was occupied by no individuals, one, or >1 individual, as a proxy of abundance. The aforementioned parameters, and local colonization and extinction probability, were modeled as a function of weather conditions (temperature, humidity) and vegetation cover at the sampling station (5 m) and contextual (100 m) scales. Encounter histories were obtained with passive acoustic recorders between February and July in 2015. Consistent with known habitat preferences, the highest occupancies were associated with secondary forests for E. wightmanae and sun plantations for E. brittoni. Occupancy probability for E. antillensis was similar across habitat types, indicating no aversion to shaded–forested habitats. Shaded plantations harbored moderate levels of occupancy for all species, indicating their potential value for multispecies conservation. Local colonization rates increased with forest cover for E. wightmanae, and with open habitats for E. brittoni and E. antillensis. Open habitats harbored a higher abundance of E. brittoni and E antillensis, but lower values for E. wightmanae. Sun and shaded plantations could provide quality habitat for Eleutherodactylus spp. if managed for features that promote local colonization and abundance.
","language":"English","publisher":"The Herpetologists' League","doi":"10.1655/Herpetologica-D-16-00089","usgsCitation":"Monroe, K.D., Collazo, J., Pacifici, K., Reich, B.J., Puente-Rolon, A.R., and Terando, A.J., 2017, Occupancy and abundance of Eleutherodactylus frogs in coffee plantations in Puerto Rico: Herpetologica, v. 73, no. 4, p. 297-306, https://doi.org/10.1655/Herpetologica-D-16-00089.","productDescription":"10 p.","startPage":"297","endPage":"306","ipdsId":"IP-077346","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":348434,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Puerto Rico","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"MultiPolygon\",\"coordinates\":[[[[-65.3277,18.295843],[-65.337451,18.308308],[-65.327318,18.323666],[-65.342068,18.34529],[-65.335701,18.349535],[-65.329334,18.341955],[-65.321754,18.338316],[-65.309833,18.337973],[-65.304409,18.332054],[-65.298328,18.330529],[-65.255933,18.342117],[-65.221568,18.320959],[-65.222853,18.310464],[-65.249857,18.296691],[-65.260282,18.290823],[-65.283269,18.280214],[-65.3277,18.295843]]],[[[-67.89174,18.11397],[-67.887099,18.112574],[-67.87643,18.114157],[-67.869804,18.118851],[-67.861548,18.122144],[-67.848245,18.10832],[-67.843202,18.094858],[-67.843615,18.085099],[-67.845293,18.081938],[-67.853098,18.078195],[-67.865598,18.06544],[-67.871462,18.0578],[-67.895921,18.052342],[-67.904431,18.05913],[-67.918778,18.063116],[-67.927841,18.068572],[-67.940799,18.079716],[-67.934479,18.111306],[-67.932185,18.113221],[-67.91088,18.119668],[-67.89174,18.11397]]],[[[-65.308717,18.145172],[-65.302295,18.141089],[-65.294896,18.14283],[-65.287962,18.148097],[-65.275165,18.13443],[-65.276214,18.131936],[-65.283248,18.132999],[-65.296036,18.12799],[-65.322794,18.126589],[-65.327184,18.124106],[-65.338506,18.112439],[-65.342037,18.11138],[-65.350493,18.111914],[-65.364733,18.120377],[-65.397837,18.110873],[-65.399791,18.108832],[-65.411767,18.106211],[-65.423765,18.097764],[-65.426311,18.093749],[-65.45138,18.086096],[-65.45681,18.087778],[-65.465849,18.087715],[-65.468768,18.092643],[-65.47979,18.096352],[-65.507265,18.091646],[-65.524209,18.081977],[-65.542087,18.081177],[-65.558646,18.08566],[-65.569305,18.091616],[-65.570628,18.097325],[-65.57686,18.103224],[-65.575579,18.115669],[-65.546199,18.119329],[-65.511712,18.13284],[-65.489829,18.135912],[-65.46791,18.143767],[-65.437058,18.15766],[-65.399517,18.161935],[-65.371373,18.157517],[-65.334289,18.147761],[-65.313476,18.144296],[-65.308717,18.145172]]],[[[-66.438813,18.485713],[-66.420921,18.488639],[-66.410344,18.489886],[-66.394287,18.489748],[-66.377286,18.488044],[-66.37282,18.487726],[-66.349647,18.486335],[-66.337728,18.48562],[-66.315477,18.474724],[-66.31503,18.47468],[-66.291225,18.472347],[-66.283675,18.472203],[-66.276599,18.478129],[-66.269799,18.480281],[-66.258015,18.476906],[-66.251547,18.472464],[-66.241797,18.46874],[-66.220148,18.466],[-66.199032,18.466163],[-66.192664,18.466212],[-66.183886,18.460506],[-66.179218,18.455305],[-66.172315,18.451462],[-66.159796,18.451706],[-66.153037,18.454457],[-66.14395,18.459761],[-66.139572,18.462317],[-66.139451,18.462387],[-66.139443,18.462315],[-66.138532,18.453305],[-66.133085,18.445881],[-66.127938,18.444632],[-66.125198,18.451209],[-66.124284,18.456324],[-66.123188,18.45943],[-66.123343,18.460363],[-66.125015,18.470435],[-66.118338,18.469581],[-66.092098,18.466535],[-66.083254,18.462022],[-66.073987,18.4581],[-66.043272,18.453655],[-66.03944,18.454441],[-66.036559,18.450216],[-66.036491,18.450117],[-66.023221,18.443875],[-66.006523,18.444347],[-65.99718,18.449895],[-65.992935,18.457489],[-65.992793,18.458102],[-65.992349,18.460024],[-65.99079,18.460419],[-65.958492,18.451354],[-65.92567,18.444881],[-65.916843,18.444619],[-65.907756,18.446893],[-65.904988,18.450926],[-65.878683,18.438322],[-65.838825,18.431865],[-65.831476,18.426849],[-65.828457,18.423543],[-65.816691,18.410663],[-65.794556,18.402845],[-65.787666,18.402544],[-65.774937,18.413951],[-65.77053,18.41294],[-65.769749,18.409473],[-65.771695,18.406277],[-65.750455,18.385208],[-65.750179,18.38505],[-65.742154,18.380459],[-65.733567,18.382211],[-65.699069,18.368156],[-65.669636,18.362102],[-65.668845,18.361939],[-65.634431,18.369835],[-65.627246,18.376436],[-65.626527,18.381728],[-65.624975,18.386553],[-65.622761,18.387771],[-65.618229,18.386496],[-65.614891,18.382473],[-65.619068,18.367755],[-65.628198,18.353711],[-65.63419,18.338965],[-65.628047,18.328252],[-65.626456,18.298982],[-65.634389,18.292349],[-65.635826,18.288271],[-65.634893,18.283923],[-65.630833,18.264989],[-65.623111,18.248012],[-65.597618,18.234289],[-65.589947,18.228225],[-65.593795,18.224059],[-65.615981,18.227389],[-65.626731,18.235484],[-65.638181,18.229121],[-65.637565,18.224444],[-65.628414,18.205149],[-65.635281,18.199975],[-65.639688,18.205656],[-65.662185,18.207018],[-65.664127,18.207136],[-65.690749,18.19499],[-65.694515,18.187011],[-65.691021,18.178998],[-65.695856,18.179324],[-65.710895,18.186963],[-65.712533,18.189146],[-65.717999,18.190176],[-65.728471,18.185588],[-65.734664,18.180368],[-65.738834,18.174066],[-65.739125,18.173453],[-65.743632,18.163957],[-65.758728,18.156601],[-65.766919,18.148424],[-65.777584,18.129239],[-65.796711,18.083746],[-65.796289,18.079835],[-65.794686,18.078607],[-65.795028,18.073561],[-65.796711,18.069842],[-65.801831,18.058527],[-65.809174,18.056818],[-65.817107,18.063378],[-65.825848,18.057482],[-65.83109,18.050664],[-65.834274,18.038988],[-65.832429,18.014916],[-65.839591,18.015077],[-65.850913,18.011954],[-65.870335,18.006597],[-65.875122,18.002826],[-65.884937,17.988521],[-65.896102,17.99026],[-65.905319,17.983974],[-65.910537,17.981855],[-65.924738,17.976087],[-65.976611,17.967669],[-65.98455,17.969411],[-65.985358,17.971854],[-65.995185,17.978989],[-66.007731,17.980541],[-66.017308,17.979583],[-66.019539,17.978354],[-66.024,17.975896],[-66.046585,17.954853],[-66.049033,17.954561],[-66.058217,17.959238],[-66.068678,17.966335],[-66.069979,17.966357],[-66.08141,17.966552],[-66.116194,17.949141],[-66.127009,17.946953],[-66.140661,17.94102],[-66.147912,17.933963],[-66.155387,17.929406],[-66.159742,17.928613],[-66.161232,17.931747],[-66.175626,17.933565],[-66.186914,17.935363],[-66.189726,17.933936],[-66.200174,17.929515],[-66.206961,17.932268],[-66.213374,17.944614],[-66.202655,17.944753],[-66.185554,17.940997],[-66.179548,17.943727],[-66.174839,17.948214],[-66.176814,17.950438],[-66.206207,17.96305],[-66.206807,17.963307],[-66.215355,17.959376],[-66.218081,17.95729],[-66.231519,17.943912],[-66.229181,17.934651],[-66.232013,17.931154],[-66.252737,17.934574],[-66.260684,17.936083],[-66.270905,17.947098],[-66.275651,17.94826],[-66.290782,17.946491],[-66.297679,17.959148],[-66.31695,17.976683],[-66.323659,17.978536],[-66.338152,17.976492],[-66.33839,17.976458],[-66.362511,17.968231],[-66.365098,17.964832],[-66.368777,17.957717],[-66.371591,17.951469],[-66.385059,17.939004],[-66.391227,17.945819],[-66.398945,17.950925],[-66.412131,17.957286],[-66.445481,17.979379],[-66.450368,17.983226],[-66.454888,17.986784],[-66.461342,17.990273],[-66.491396,17.990262],[-66.510143,17.985618],[-66.540537,17.975476],[-66.583233,17.961229],[-66.589658,17.969386],[-66.594392,17.970682],[-66.605035,17.969015],[-66.623788,17.98105],[-66.631944,17.982746],[-66.645651,17.98026],[-66.657797,17.974605],[-66.664391,17.968259],[-66.672819,17.966451],[-66.699115,17.977568],[-66.709856,17.982109],[-66.713394,17.987763],[-66.716957,17.990344],[-66.731118,17.991658],[-66.746248,17.990349],[-66.750427,17.995443],[-66.753964,17.99959],[-66.755341,18.001203],[-66.764491,18.006317],[-66.770307,18.005955],[-66.799656,17.99245],[-66.806866,17.983786],[-66.807924,17.979606],[-66.806903,17.976046],[-66.805683,17.975052],[-66.795106,17.977438],[-66.789302,17.980793],[-66.784953,17.978326],[-66.787245,17.972914],[-66.80827,17.965635],[-66.8224,17.954499],[-66.838584,17.949931],[-66.852288,17.955004],[-66.856474,17.956553],[-66.859471,17.954316],[-66.862545,17.952022],[-66.871697,17.952707],[-66.88344,17.952526],[-66.899639,17.948298],[-66.904585,17.950527],[-66.906532,17.955356],[-66.906276,17.963368],[-66.924529,17.972808],[-66.928651,17.970204],[-66.930414,17.963127],[-66.916127,17.959102],[-66.909483,17.952559],[-66.909359,17.94988],[-66.912522,17.947446],[-66.930313,17.943389],[-66.932636,17.939998],[-66.931581,17.9369],[-66.919298,17.932062],[-66.923826,17.926923],[-66.927261,17.926875],[-66.959998,17.940216],[-66.980516,17.951648],[-66.98105,17.952505],[-66.982669,17.9551],[-66.982206,17.961192],[-66.987287,17.970663],[-66.996738,17.972899],[-67.003972,17.970799],[-67.014744,17.968468],[-67.024522,17.970722],[-67.062478,17.973819],[-67.076534,17.967759],[-67.089827,17.951418],[-67.101468,17.946621],[-67.109985,17.945806],[-67.109986,17.945806],[-67.128251,17.948153],[-67.133733,17.951919],[-67.167031,17.963073],[-67.178566,17.964792],[-67.183508,17.962706],[-67.188717,17.950989],[-67.187474,17.946252],[-67.183694,17.937982],[-67.183457,17.931135],[-67.194785,17.932826],[-67.196924,17.935651],[-67.197273,17.937461],[-67.197517,17.941514],[-67.197668,17.943549],[-67.198988,17.94782],[-67.200973,17.949896],[-67.210034,17.953595],[-67.212101,17.956027],[-67.21433,17.962436],[-67.215271,17.983464],[-67.211973,17.992993],[-67.207694,17.998019],[-67.177893,18.008882],[-67.174299,18.011149],[-67.172397,18.014906],[-67.172138,18.021422],[-67.173761,18.024548],[-67.193269,18.03185],[-67.209887,18.035439],[-67.196694,18.066491],[-67.190656,18.064269],[-67.184589,18.06775],[-67.183938,18.069914],[-67.186465,18.074195],[-67.192999,18.076877],[-67.198212,18.076828],[-67.199314,18.091135],[-67.19529,18.096149],[-67.183921,18.103683],[-67.182182,18.108507],[-67.176554,18.151046],[-67.178618,18.159318],[-67.180822,18.168055],[-67.180701,18.168182],[-67.155185,18.195001],[-67.152665,18.203493],[-67.158001,18.216719],[-67.173,18.230666],[-67.175429,18.248008],[-67.187843,18.266671],[-67.187873,18.266874],[-67.189971,18.281015],[-67.196056,18.290443],[-67.209963,18.294974],[-67.225403,18.296648],[-67.226081,18.296722],[-67.235137,18.299935],[-67.267484,18.353149],[-67.27135,18.362329],[-67.268259,18.366989],[-67.260671,18.370197],[-67.23909,18.375318],[-67.226744,18.378247],[-67.216998,18.382078],[-67.202167,18.389908],[-67.160144,18.415587],[-67.159608,18.415915],[-67.156599,18.418983],[-67.155245,18.424401],[-67.156619,18.439562],[-67.161746,18.453462],[-67.169011,18.466352],[-67.169016,18.478488],[-67.164144,18.487396],[-67.14283,18.505485],[-67.138249,18.507776],[-67.125655,18.511706],[-67.103468,18.514523],[-67.093752,18.515757],[-67.07929,18.513256],[-67.020276,18.510603],[-66.988958,18.497724],[-66.95954,18.489878],[-66.957733,18.489129],[-66.957517,18.489171],[-66.944636,18.491693],[-66.906872,18.483556],[-66.90143,18.484552],[-66.867386,18.490785],[-66.849673,18.490745],[-66.83694,18.487659],[-66.836635,18.487701],[-66.79932,18.492775],[-66.780311,18.491411],[-66.764893,18.484097],[-66.749301,18.476701],[-66.742067,18.474681],[-66.733986,18.473457],[-66.710743,18.472611],[-66.683719,18.481367],[-66.679876,18.484944],[-66.664364,18.487809],[-66.645839,18.488777],[-66.624618,18.494199],[-66.586778,18.484948],[-66.584074,18.484287],[-66.565241,18.485523],[-66.562916,18.48845],[-66.563485,18.490512],[-66.558503,18.489987],[-66.53484,18.481253],[-66.533487,18.481663],[-66.529476,18.482877],[-66.511609,18.476848],[-66.470292,18.46907],[-66.456486,18.46892],[-66.449184,18.470991],[-66.441852,18.479751],[-66.439961,18.485525],[-66.438813,18.485713]]]]},\"properties\":{\"name\":\"Puerto Rico\",\"nation\":\"USA \"}}]}","volume":"73","issue":"4","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5a0425b8e4b0dc0b45b4536e","contributors":{"authors":[{"text":"Monroe, Kelen D.","contributorId":200135,"corporation":false,"usgs":false,"family":"Monroe","given":"Kelen","email":"","middleInitial":"D.","affiliations":[{"id":33914,"text":"North Carolina State University, Raleigh","active":true,"usgs":false}],"preferred":false,"id":721098,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Collazo, Jaime A. 0000-0002-1816-7744 jaime_collazo@usgs.gov","orcid":"https://orcid.org/0000-0002-1816-7744","contributorId":173448,"corporation":false,"usgs":true,"family":"Collazo","given":"Jaime A.","email":"jaime_collazo@usgs.gov","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":false,"id":720608,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Pacifici, Krishna","contributorId":26564,"corporation":false,"usgs":false,"family":"Pacifici","given":"Krishna","email":"","affiliations":[{"id":7091,"text":"North Carolina State University","active":true,"usgs":false}],"preferred":false,"id":721099,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Reich, Brian J.","contributorId":150871,"corporation":false,"usgs":false,"family":"Reich","given":"Brian","email":"","middleInitial":"J.","affiliations":[{"id":7091,"text":"North Carolina State University","active":true,"usgs":false}],"preferred":false,"id":721100,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Puente-Rolon, Alberto R.","contributorId":42498,"corporation":false,"usgs":true,"family":"Puente-Rolon","given":"Alberto","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":721101,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Terando, Adam J. 0000-0002-9280-043X aterando@usgs.gov","orcid":"https://orcid.org/0000-0002-9280-043X","contributorId":173447,"corporation":false,"usgs":true,"family":"Terando","given":"Adam","email":"aterando@usgs.gov","middleInitial":"J.","affiliations":[{"id":565,"text":"Southeast Climate Science Center","active":true,"usgs":true}],"preferred":true,"id":721102,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}} ,{"id":70187773,"text":"70187773 - 2017 - Estimating evaporative fraction from readily obtainable variables in mangrove forests of the Everglades, U.S.A.","interactions":[],"lastModifiedDate":"2017-05-18T12:57:32","indexId":"70187773","displayToPublicDate":"2017-05-18T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2068,"text":"International Journal of Remote Sensing","active":true,"publicationSubtype":{"id":10}},"title":"Estimating evaporative fraction from readily obtainable variables in mangrove forests of the Everglades, U.S.A.","docAbstract":"A remote-sensing-based model to estimate evaporative fraction (EF) – the ratio of latent heat (LE; energy equivalent of evapotranspiration –ET–) to total available energy – from easily obtainable remotely-sensed and meteorological parameters is presented. This research specifically addresses the shortcomings of existing ET retrieval methods such as calibration requirements of extensive accurate in situ micrometeorological and flux tower observations or of a large set of coarse-resolution or model-derived input datasets. The trapezoid model is capable of generating spatially varying EF maps from standard products such as land surface temperature (Ts) normalized difference vegetation index (NDVI) and daily maximum air temperature (Ta). The 2009 model results were validated at an eddy-covariance tower (Fluxnet ID: US-Skr) in the Everglades using Ts and NDVI products from Landsat as well as the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors. Results indicate that the model accuracy is within the range of instrument uncertainty, and is dependent on the spatial resolution and selection of end-members (i.e. wet/dry edge). The most accurate results were achieved with the Ts from Landsat relative to the Ts from the MODIS flown on the Terra and Aqua platforms due to the fine spatial resolution of Landsat (30 m). The bias, mean absolute percentage error and root mean square percentage error were as low as 2.9% (3.0%), 9.8% (13.3%), and 12.1% (16.1%) for Landsat-based (MODIS-based) EF estimates, respectively. Overall, this methodology shows promise for bridging the gap between temporally limited ET estimates at Landsat scales and more complex and difficult to constrain global ET remote-sensing models.
Remote sensing-based field-scale evapotranspiration (ET) maps are useful for characterizing water use patterns and assessing crop performance. The relative impact of climate variability and water management decisions are better studied and quantified using historical data that are derived using a set of consistent datasets and methodology. Historical (1984–2014) Landsat-based ET maps were generated for major irrigation districts in California, i.e., Palo Verde and eight other sub-basins in parts of the middle and lower Central Valley. A total of 3396 Landsat images were processed using the Operational Simplified Surface Energy Balance (SSEBop) model that integrates weather and remotely sensed images to estimate monthly and annual ET within the study sites over the 31 years. Model output evaluation and validation using gridded-flux data and water balance ET approaches indicated relatively good correspondence (R2 up to 0.88, root mean square error as low as 14 mm/month) between SSEBop ET and validation datasets. In a pairwise comparison, annual variability of agro-hydrologic parameters of actual evapotranspiration (ETa), land surface temperature (Ts), and runoff (Q) were found to be more variable than their corresponding climatic counterparts of atmospheric water demand (ETo), air temperature (Ta), and precipitation (P), revealing process differences between regional climatic drivers and localized agro-hydrologic responses. However, only Ta showed a consistent increase (up to 1.2 K) over study sites during the 31 years, whereas other climate variables such as ETo and P showed a generally neutral trend. This study demonstrates a useful application of “Big Data” science where large volumes of historical Landsat and weather datasets were used to quantify and understand the relative importance of water management and climate variability in crop water use dynamics in regards to the linkages among water management decisions, hydrologic processes and economic transactions. Irrigation district-wide ETa estimates were used to compute historical crop water use volumes and monetary equivalents of water savings for the Palo Verde Irrigation District (PVID). During the peak crop fallowing year in PVID, the water saved reached a maximum of ~ 107,200 acre-feet in 2011 with an estimated monetary payout value of $20.5 million. A significant decreasing trend in actual ET despite an increasing atmospheric demand in PVID highlights the role of management decisions in affecting local hydrologic processes. This study has importance for planning water resource allocation, managing water rights, sustaining agricultural production, and quantifying impacts of climate and land use/land cover changes on water resources. With increased computational efficiency, similar studies can be conducted in other parts of the world to help policy and decision makers understand and quantify various aspects of water resources management.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.rse.2017.05.005","usgsCitation":"Senay, G.B., Schauer, M., Friedrichs, M., Velpuri, N., and Singh, R., 2017, Satellite-based water use dynamics using historical Landsat data (1984–2014) in the southwestern United States: Remote Sensing of Environment, v. 202, p. 98-112, https://doi.org/10.1016/j.rse.2017.05.005.","productDescription":"15 p.","startPage":"98","endPage":"112","ipdsId":"IP-084512","costCenters":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"links":[{"id":493296,"rank":2,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1016/j.rse.2017.05.005","text":"Publisher Index Page"},{"id":493191,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Arizona, California","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"coordinates\": [\n [\n [\n -125.40977836532282,\n 42.04933677309765\n ],\n [\n -123.16675091874134,\n 36.46673710104686\n ],\n [\n -118.58307879273526,\n 32.705501119947826\n ],\n [\n -113.73717874196483,\n 32.12914120007623\n ],\n [\n -113.88408063137007,\n 35.268837865873046\n ],\n [\n -114.8258516238531,\n 35.43740401775197\n ],\n [\n -117.48081678552326,\n 37.20400442230724\n ],\n [\n -120.03564230020528,\n 39.18700095919894\n ],\n [\n -120.18220374157768,\n 41.98136883976758\n ],\n [\n -125.40977836532282,\n 42.04933677309765\n ]\n ]\n ],\n \"type\": \"Polygon\"\n }\n }\n ]\n}","volume":"202","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Senay, Gabriel B. 0000-0002-8810-8539 senay@usgs.gov","orcid":"https://orcid.org/0000-0002-8810-8539","contributorId":3114,"corporation":false,"usgs":true,"family":"Senay","given":"Gabriel","email":"senay@usgs.gov","middleInitial":"B.","affiliations":[{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":944425,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Schauer, Matthew 0000-0002-4198-3379","orcid":"https://orcid.org/0000-0002-4198-3379","contributorId":216909,"corporation":false,"usgs":true,"family":"Schauer","given":"Matthew","email":"","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":944426,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Friedrichs, MacKenzie 0000-0002-9602-321X mfriedrichs@usgs.gov","orcid":"https://orcid.org/0000-0002-9602-321X","contributorId":5847,"corporation":false,"usgs":true,"family":"Friedrichs","given":"MacKenzie","email":"mfriedrichs@usgs.gov","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":223,"text":"Earth Resources Observation and Science (EROS) Center (Geography)","active":false,"usgs":true}],"preferred":true,"id":944427,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Velpuri, Naga Manohar 0000-0002-6370-1926","orcid":"https://orcid.org/0000-0002-6370-1926","contributorId":216911,"corporation":false,"usgs":true,"family":"Velpuri","given":"Naga Manohar ","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":944428,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Singh, Ramesh 0000-0002-8164-3483","orcid":"https://orcid.org/0000-0002-8164-3483","contributorId":210983,"corporation":false,"usgs":true,"family":"Singh","given":"Ramesh","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true}],"preferred":true,"id":944429,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}} ,{"id":70187778,"text":"70187778 - 2017 - Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah","interactions":[],"lastModifiedDate":"2017-05-18T14:19:06","indexId":"70187778","displayToPublicDate":"2017-05-18T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3352,"text":"Science of the Total Environment","active":true,"publicationSubtype":{"id":10}},"title":"Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah","docAbstract":"Surface water and biota from Great Salt Lake (GSL) contain some of the highest documented concentrations of total mercury (THg) and methylmercury (MeHg) in the United States. In order to identify potential biological sources of MeHg and controls on its production in this ecosystem, THg and MeHg concentrations, rates of Hg(II)-methylation and MeHg degradation, and abundances and compositions of archaeal and bacterial 16 rRNA gene transcripts were determined in sediment along a salinity gradient in GSL. Rates of Hg(II)-methylation were inversely correlated with salinity and were at or below the limits of detection in sediment sampled from areas with hypersaline surface water. The highest rates of Hg(II)-methylation were measured in sediment with low porewater salinity, suggesting that benthic microbial communities inhabiting less saline environments are supplying the majority of MeHg in the GSL ecosystem. The abundance of 16S rRNA gene transcripts affiliated with the sulfate reducer Desulfobacterium sp. was positively correlated with MeHg concentrations and Hg(II)-methylation rates in sediment, indicating a potential role for this taxon in Hg(II)-methylation in low salinity areas of GSL. Reactive inorganic Hg(II) (a proxy used for Hg(II) available for methylation) and MeHg concentrations were inversely correlated with salinity. Thus, constraints imposed by salinity on Hg(II)-methylating populations and the availability of Hg(II) for methylation are inferred to result in higher MeHg production potentials in lower salinity environments. Benthic microbial MeHg degradation was also most active in lower salinity environments. Collectively, these results suggest an important role for sediment anoxia and microbial sulfate reducers in the production of MeHg in low salinity GSL sub-habitats and may indicate a role for salinity in constraining Hg(II)-methylation and MeHg degradation activities by influencing the availability of Hg(II) for methylation.
","language":"English","publisher":"Elsevier","doi":"10.1016/j.scitotenv.2016.12.157","usgsCitation":"Boyd, E., Yu, R., Barkay, T., Hamilton, T.L., Baxter, B.K., Naftz, D.L., and Marvin-DiPasquale, M., 2017, Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah: Science of the Total Environment, v. 581-582, p. 495-506, https://doi.org/10.1016/j.scitotenv.2016.12.157.","productDescription":"12 p.","startPage":"495","endPage":"506","ipdsId":"IP-080435","costCenters":[{"id":610,"text":"Utah Water Science Center","active":true,"usgs":true}],"links":[{"id":469838,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1016/j.scitotenv.2016.12.157","text":"External Repository"},{"id":341480,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Utah","otherGeospatial":"Great Salt Lake","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -113.2415771484375,\n 40.60144147645398\n ],\n [\n -111.84356689453125,\n 40.60144147645398\n ],\n [\n -111.84356689453125,\n 41.75287318430239\n ],\n [\n -113.2415771484375,\n 41.75287318430239\n ],\n [\n -113.2415771484375,\n 40.60144147645398\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"581-582","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"591eb2e1e4b0a7fdb4418b83","contributors":{"authors":[{"text":"Boyd, Eric S.","contributorId":192130,"corporation":false,"usgs":false,"family":"Boyd","given":"Eric S.","affiliations":[],"preferred":false,"id":695581,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Yu, Ri-Qing","contributorId":192131,"corporation":false,"usgs":false,"family":"Yu","given":"Ri-Qing","email":"","affiliations":[],"preferred":false,"id":695582,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Barkay, Tamar","contributorId":192132,"corporation":false,"usgs":false,"family":"Barkay","given":"Tamar","email":"","affiliations":[],"preferred":false,"id":695583,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hamilton, Trinity L.","contributorId":192133,"corporation":false,"usgs":false,"family":"Hamilton","given":"Trinity","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":695584,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Baxter, Bonnie K.","contributorId":192134,"corporation":false,"usgs":false,"family":"Baxter","given":"Bonnie","email":"","middleInitial":"K.","affiliations":[],"preferred":false,"id":695585,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Naftz, David L. 0000-0003-1130-6892 dlnaftz@usgs.gov","orcid":"https://orcid.org/0000-0003-1130-6892","contributorId":1041,"corporation":false,"usgs":true,"family":"Naftz","given":"David","email":"dlnaftz@usgs.gov","middleInitial":"L.","affiliations":[{"id":5050,"text":"WY-MT Water Science Center","active":true,"usgs":true},{"id":610,"text":"Utah Water Science Center","active":true,"usgs":true}],"preferred":true,"id":695579,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Marvin-DiPasquale, Mark 0000-0002-8186-9167 mmarvin@usgs.gov","orcid":"https://orcid.org/0000-0002-8186-9167","contributorId":149175,"corporation":false,"usgs":true,"family":"Marvin-DiPasquale","given":"Mark","email":"mmarvin@usgs.gov","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":695580,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}} ,{"id":70187787,"text":"70187787 - 2017 - A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders","interactions":[],"lastModifiedDate":"2017-12-21T10:19:21","indexId":"70187787","displayToPublicDate":"2017-05-17T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2980,"text":"PLoS ONE","active":true,"publicationSubtype":{"id":10}},"title":"A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders","docAbstract":"Several spatial capture-recapture (SCR) models have been developed to estimate animal abundance by analyzing the detections of individuals in a spatial array of traps. Most of these models do not use the actual dates and times of detection, even though this information is readily available when using continuous-time recorders, such as microphones or motion-activated cameras. Instead most SCR models either partition the period of trap operation into a set of subjectively chosen discrete intervals and ignore multiple detections of the same individual within each interval, or they simply use the frequency of detections during the period of trap operation and ignore the observed times of detection. Both practices make inefficient use of potentially important information in the data.
We developed a hierarchical SCR model to estimate the spatial distribution and abundance of animals detected with continuous-time recorders. Our model includes two kinds of point processes: a spatial process to specify the distribution of latent activity centers of individuals within the region of sampling and a temporal process to specify temporal patterns in the detections of individuals. We illustrated this SCR model by analyzing spatial and temporal patterns evident in the camera-trap detections of tigers living in and around the Nagarahole Tiger Reserve in India. We also conducted a simulation study to examine the performance of our model when analyzing data sets of greater complexity than the tiger data.
Our approach provides three important benefits: First, it exploits all of the information in SCR data obtained using continuous-time recorders. Second, it is sufficiently versatile to allow the effects of both space use and behavior of animals to be specified as functions of covariates that vary over space and time. Third, it allows both the spatial distribution and abundance of individuals to be estimated, effectively providing a species distribution model, even in cases where spatial covariates of abundance are unknown or unavailable. We illustrated these benefits in the analysis of our data, which allowed us to quantify differences between nocturnal and diurnal activities of tigers and to estimate their spatial distribution and abundance across the study area. Our continuous-time SCR model allows an analyst to specify many of the ecological processes thought to be involved in the distribution, movement, and behavior of animals detected in a spatial trapping array of continuous-time recorders. We plan to extend this model to estimate the population dynamics of animals detected during multiple years of SCR surveys.
The accuracy of global positioning system (GPS) locations obtained from study animals tagged with GPS monitoring devices has been a concern as to the degree it influences assessments of movement patterns, space use, and resource selection estimates. Many methods have been proposed for screening data to retain the most accurate positions for analysis, based on dilution of precision (DOP) measures, and whether the position is a two dimensional or three dimensional fix. Here we further explore the utility of these measures, by testing a Telonics GEN3 GPS collar's positional accuracy across a wide range of environmental conditions. We found the relationship between location error and fix dimension and DOP metrics extremely weak (r2adj ∼ 0.01) in our study area. Environmental factors such as topographic exposure, canopy cover, and vegetation height explained more of the variance (r2adj = 15.08%). Our field testing covered sites where sky-view was so limited it affected GPS performance to the degree fix attempts failed frequently (fix success rates ranged 0.00–100.00% over 67 sites). Screening data using PDOP did not effectively reduce the location error in the remaining dataset. Removing two dimensional fixes reduced the mean location error by 10.95 meters, but also resulted in a 54.50% data reduction. Therefore screening data under the range of conditions sampled here would reduce information on animal movement with minor improvements in accuracy and potentially introduce bias towards more open terrain and vegetation.
","language":"English","publisher":"Nordic Board for Wildlife Research","doi":"10.2981/wlb.00229","usgsCitation":"Ironside, K.E., Mattson, D.J., Arundel, T.R., and Hansen, J.R., 2017, Is GPS telemetry location error screening beneficial?: Wildlife Biology, wlb.00229: 7 p., https://doi.org/10.2981/wlb.00229.","productDescription":"wlb.00229: 7 p.","ipdsId":"IP-072502","costCenters":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"links":[{"id":469839,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.2981/wlb.00229","text":"Publisher Index Page"},{"id":342592,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"5944ee14e4b062508e3335f8","contributors":{"authors":[{"text":"Ironside, Kirsten E. 0000-0003-1166-3793 kironside@usgs.gov","orcid":"https://orcid.org/0000-0003-1166-3793","contributorId":3379,"corporation":false,"usgs":true,"family":"Ironside","given":"Kirsten","email":"kironside@usgs.gov","middleInitial":"E.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":698452,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mattson, David J.","contributorId":191920,"corporation":false,"usgs":false,"family":"Mattson","given":"David","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":698453,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Arundel, Terence R. 0000-0003-0324-4249 tarundel@usgs.gov","orcid":"https://orcid.org/0000-0003-0324-4249","contributorId":139242,"corporation":false,"usgs":true,"family":"Arundel","given":"Terence","email":"tarundel@usgs.gov","middleInitial":"R.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":698454,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hansen, Jered R. jrhansen@usgs.gov","contributorId":5161,"corporation":false,"usgs":true,"family":"Hansen","given":"Jered","email":"jrhansen@usgs.gov","middleInitial":"R.","affiliations":[{"id":568,"text":"Southwest Biological Science Center","active":true,"usgs":true}],"preferred":true,"id":698455,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}} ,{"id":70188554,"text":"70188554 - 2017 - Arsenic and mercury contamination related to historical goldmining in the Sierra Nevada, California","interactions":[],"lastModifiedDate":"2017-06-23T16:05:05","indexId":"70188554","displayToPublicDate":"2017-05-16T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1758,"text":"Geochemistry: Exploration, Environment, Analysis","active":true,"publicationSubtype":{"id":10}},"title":"Arsenic and mercury contamination related to historical goldmining in the Sierra Nevada, California","docAbstract":"Arsenic (As) is a naturally occurring constituent in low-sulphide gold-quartz vein deposits, the dominant deposit type for lode mines in the Sierra Nevada Foothills (SNFH) gold (Au) province of California. Concentrations of naturally occurring mercury (Hg) in the SNFH Au province are low, but extensive use and loss of elemental Hg during amalgamation processing of ore from lode and placer Au deposits led to widespread contamination of Hg in the Sierra Nevada foothills and downstream areas, such as the Sacramento–San Joaquin Delta and San Francisco Bay. This review paper provides an overview of As and Hg contamination related to historical Au mining in the Sierra Nevada of California. It summarizes the geology, mineralogy, and geochemistry of the Au deposits, and provides information on specific areas where detailed studies have been done in association with past, ongoing, and planned remediation activities related to the environmental As and Hg contamination.
Arsenic is a naturally occurring constituent in low-sulphide Au-quartz vein deposits, the dominant deposit type for lode mines in the Sierra Nevada Foothills (SNFH) Au province (Ashley 2002). Because of elevated concentrations of As in accessory iron-sulphide minerals including arsenopyrite (FeAsS) and arsenian pyrite (Fe(S,As)2), As is commonly a contaminant of concern in lode Au mine waste, including waste rock and mill tailings. The principal pathways of human As exposure from mine waste include ingestion of soil or drinking water, and inhalation of dust in contaminated areas (Mitchell 2014).
Concentrations of naturally occurring Hg in the SNFH Au province are low, but extensive use and loss of elemental Hg during amalgamation processing of ore from lode and placer Au deposits (Churchill 2000) led to widespread contamination of Hg in the Sierra Nevada foothills and downstream areas, such as the Sacramento–San Joaquin Delta and San Francisco Bay (Alpers et al. 2005a). Conversion of Hg to monomethylmercury (MeHg) by sulphate-reducing and iron-reducing microbes facilitates its bioaccumulation (Wiener et al. 2003). The human Hg exposure pathway of main concern is ingestion of MeHg from sport (non-commercial) fish, especially higher trophic levels such as bass species (Davis et al. 2008). Wildlife exposure to MeHg is also a concern because of chronic and reproductive effects, for example in fish-eating and invertebrate-foraging birds (e.g. Wiener et al. 2003; Eagles-Smith et al. 2009; Ackerman et al. 2016).
Serological data are one of the primary sources of information for disease monitoring in wildlife. However, the duration of the seropositive status of exposed individuals is almost always unknown for many free-ranging host species. Directly estimating rates of antibody loss typically requires difficult longitudinal sampling of individuals following seroconversion. Instead, we propose a Bayesian statistical approach linking age and serological data to a mechanistic epidemiological model to infer brucellosis infection, the probability of antibody loss, and recovery rates of elk (Cervus canadensis) in the Greater Yellowstone Ecosystem. We found that seroprevalence declined above the age of ten, with no evidence of disease-induced mortality. The probability of antibody loss was estimated to be 0.70 per year after a five-year period of seropositivity and the basic reproduction number for brucellosis to 2.13. Our results suggest that individuals are unlikely to become re-infected because models with this mechanism were unable to reproduce a significant decline in seroprevalence in older individuals. This study highlights the possible implications of antibody loss, which could bias our estimation of critical epidemiological parameters for wildlife disease management based on serological data.
","language":"English","publisher":"Springer","doi":"10.1007/s10393-017-1235-z","usgsCitation":"Benavides, J., Caillaud, D., Scurlock, B.M., Maichak, E.J., Edwards, W., and Cross, P.C., 2017, Estimating loss of Brucella abortus antibodies from age-specific serological data in elk: EcoHealth, v. 14, no. 2, p. 234-243, https://doi.org/10.1007/s10393-017-1235-z.","productDescription":"10 p.","startPage":"234","endPage":"243","ipdsId":"IP-058311","costCenters":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"links":[{"id":469844,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1007/s10393-017-1235-z","text":"External Repository"},{"id":341372,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"14","issue":"2","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-15","publicationStatus":"PW","scienceBaseUri":"591c0fc7e4b0a7fdb43ddee6","contributors":{"authors":[{"text":"Benavides, J. A.","contributorId":192067,"corporation":false,"usgs":false,"family":"Benavides","given":"J. A.","affiliations":[],"preferred":false,"id":695322,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Caillaud, D.","contributorId":192068,"corporation":false,"usgs":false,"family":"Caillaud","given":"D.","affiliations":[],"preferred":false,"id":695323,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Scurlock, B. M.","contributorId":192069,"corporation":false,"usgs":false,"family":"Scurlock","given":"B.","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":695324,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Maichak, E. J.","contributorId":192070,"corporation":false,"usgs":false,"family":"Maichak","given":"E.","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":695325,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Edwards, W.H.","contributorId":192071,"corporation":false,"usgs":false,"family":"Edwards","given":"W.H.","email":"","affiliations":[],"preferred":false,"id":695326,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Cross, Paul C. 0000-0001-8045-5213 pcross@usgs.gov","orcid":"https://orcid.org/0000-0001-8045-5213","contributorId":2709,"corporation":false,"usgs":true,"family":"Cross","given":"Paul","email":"pcross@usgs.gov","middleInitial":"C.","affiliations":[{"id":481,"text":"Northern Rocky Mountain Science Center","active":true,"usgs":true}],"preferred":true,"id":695321,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}} ,{"id":70187709,"text":"70187709 - 2017 - Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios","interactions":[],"lastModifiedDate":"2017-11-10T14:27:56","indexId":"70187709","displayToPublicDate":"2017-05-16T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3271,"text":"Restoration Ecology","active":true,"publicationSubtype":{"id":10}},"title":"Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios","docAbstract":"In large-scale conservation decisions, scenario planning identifies key uncertainties of ecosystem function linked to ecological drivers affected by management, incorporates ecological feedbacks, and scales up to answer questions robust to alternative futures. Wetland restoration planning requires an understanding of how proposed changes in surface hydrology, water storage, and landscape connectivity affect aquatic animal composition, productivity, and food-web function. In the Florida Everglades, reintroduction of historical hydrologic patterns is expected to increase productivity of all trophic levels. Highly mobile indicator species such as wading birds integrate secondary productivity from aquatic prey (small fishes and crayfish) over the landscape. To evaluate how fish, crayfish, and wading birds may respond to alternative hydrologic restoration plans, we compared predicted small fish density, crayfish density and biomass, and wading bird occurrence for existing conditions to four restoration scenarios that varied water storage and removal of levees and canals (i.e. decompartmentalization). Densities of small fish and occurrence of wading birds are predicted to increase throughout most of the Everglades under all restoration options because of increased flows and connectivity. Full decompartmentalization goes furthest toward recreating hypothesized historical patterns of fish density by draining excess water ponded by levees and hydrating areas that are currently drier than in the past. In contrast, crayfish density declined and species composition shifted under all restoration options because of lengthened hydroperiods (i.e. time of inundation). Under full decompartmentalization, the distribution of increased prey available for wading birds shifted south, closer to historical locations of nesting activity in Everglades National Park.
","language":"English","publisher":"Wiley","doi":"10.1111/rec.12518","usgsCitation":"Beerens, J.M., Trexler, J.C., and Catano, C.P., 2017, Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios: Restoration Ecology, v. 25, no. S1, p. S86-S98, https://doi.org/10.1111/rec.12518.","productDescription":"13 p.","startPage":"S86","endPage":"S98","ipdsId":"IP-070475","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":469841,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"http://onlinelibrary.wiley.com/doi/10.1111/rec.12518/abstract","text":"External Repository"},{"id":341344,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"25","issue":"S1","publicComments":"Special Issue: Synthesis of Everglades research and ecosystem services (SERES) project","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-10","publicationStatus":"PW","scienceBaseUri":"591c0fc8e4b0a7fdb43ddeec","contributors":{"authors":[{"text":"Beerens, James M. 0000-0001-8143-916X jbeerens@usgs.gov","orcid":"https://orcid.org/0000-0001-8143-916X","contributorId":143722,"corporation":false,"usgs":true,"family":"Beerens","given":"James","email":"jbeerens@usgs.gov","middleInitial":"M.","affiliations":[{"id":566,"text":"Southeast Ecological Science Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":695201,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Trexler, Joel C.","contributorId":36267,"corporation":false,"usgs":false,"family":"Trexler","given":"Joel","email":"","middleInitial":"C.","affiliations":[{"id":7017,"text":"Florida International University","active":true,"usgs":false}],"preferred":false,"id":695202,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Catano, Christopher P.","contributorId":138935,"corporation":false,"usgs":false,"family":"Catano","given":"Christopher","email":"","middleInitial":"P.","affiliations":[{"id":7017,"text":"Florida International University","active":true,"usgs":false}],"preferred":false,"id":695203,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}} ,{"id":70187713,"text":"70187713 - 2017 - Performance and retention of lightweight satellite radio tags applied to the ears of polar bears (Ursus maritimus)","interactions":[],"lastModifiedDate":"2017-05-16T11:02:37","indexId":"70187713","displayToPublicDate":"2017-05-16T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":773,"text":"Animal Biotelemetry","active":true,"publicationSubtype":{"id":10}},"title":"Performance and retention of lightweight satellite radio tags applied to the ears of polar bears (Ursus maritimus)","docAbstract":"Background
Satellite telemetry studies provide information that is critical to the conservation and management of species affected by ecological change. Here we report on the performance and retention of two types (SPOT-227 and SPOT-305A) of ear-mounted Argos-linked satellite transmitters (i.e., platform transmitter terminal, or PTT) deployed on free-ranging polar bears in Eastern Greenland, Baffin Bay, Kane Basin, the southern Beaufort Sea, and the Chukchi Sea during 2007–2013.
Results
Transmissions from 142 out of 145 PTTs deployed on polar bears were received for an average of 69.3 days. The average functional longevity, defined as the number of days they transmitted while still attached to polar bears, for SPOT-227 was 56.8 days and for SPOT-305A was 48.6 days. Thirty-four of the 142 (24%) PTTs showed signs of being detached before they stopped transmitting, indicating that tag loss was an important aspect of tag failure. Furthermore, 10 of 26 (38%) bears that were re-observed following application of a PTT had a split ear pinna, suggesting that some transmitters were detached by force. All six PTTs that were still on bears upon recapture had lost the antenna, which indicates that antenna breakage was a significant contributor to PTT failure. Finally, only nine of the 142 (6%) PTTs—three of which were still attached to bears—had a final voltage reading close to the value indicating battery exhaustion. This suggests that battery exhaustion was not a major factor in tag performance.
Conclusions
The average functional longevity of approximately 2 months for ear-mounted PTTs (this study) is poor compared to PTT collars fitted to adult female polar bears, which can last for several years. Early failure of the ear-mounted PTTs appeared to be caused primarily by detachment from the ear or antenna breakage. We suggest that much smaller and lighter ear-mounted transmitters are necessary to reduce the risk of tissue irritation, tissue damage, and tag detachment, and with a more robust antenna design. Our results are applicable to other tag types (e.g., iridium and VHF systems) and to research on other large mammals that cannot wear radio collars.
The gut microbiome of herbivorous animals consists of organisms that efficiently digest the structural carbohydrates of ingested plant material. Green turtles (Chelonia mydas) provide an interesting model of change in these microbial communities because they undergo a pronounced shift from a surface-pelagic distribution and omnivorous diet to a neritic distribution and herbivorous diet. As an alternative to direct sampling of the gut, we investigated the cloacal microbiomes of juvenile green turtles before and after recruitment to neritic waters to observe any changes in their microbial community structure. Cloacal swabs were taken from individual turtles for analysis of the 16S rRNA gene sequences using Illumina sequencing. One fecal sample was also obtained, allowing for a preliminary comparison with the bacterial community of the cloaca. We found significant variation in the juvenile green turtle bacterial communities between pelagic and neritic habitats, suggesting that environmental and dietary factors support different bacterial communities in green turtles from these habitats. This is the first study to characterize the cloacal microbiome of green turtles in the context of their ontogenetic shifts, which could provide valuable insight into the origins of their gut bacteria and how the microbial community supports their shift to herbivory.
","language":"English","publisher":"PLoS","doi":"10.1371/journal.pone.0177642","usgsCitation":"Price, J.T., Paladino, F.V., Lamont, M.M., Witherington, B.E., Bates, S.T., and Soule, T., 2017, Characterization of the juvenile green turtle (Chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats: PLoS ONE, v. 12, no. 5, p. 1-13, https://doi.org/10.1371/journal.pone.0177642.","productDescription":"e0177642; 13 p.","startPage":"1","endPage":"13","ipdsId":"IP-078134","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":469842,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1371/journal.pone.0177642","text":"Publisher Index Page"},{"id":341390,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","otherGeospatial":"Gulf of Mexico","geographicExtents":"{\n \"type\": \"FeatureCollection\",\n \"features\": [\n {\n \"type\": \"Feature\",\n \"properties\": {},\n \"geometry\": {\n \"type\": \"Polygon\",\n \"coordinates\": [\n [\n [\n -90.703125,\n 28\n ],\n [\n -84.7705078125,\n 28\n ],\n [\n -84.7705078125,\n 30.80791068136646\n ],\n [\n -90.703125,\n 30.80791068136646\n ],\n [\n -90.703125,\n 28\n ]\n ]\n ]\n }\n }\n ]\n}","volume":"12","issue":"5","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-11","publicationStatus":"PW","scienceBaseUri":"591c0fc5e4b0a7fdb43ddee2","contributors":{"authors":[{"text":"Price, James T.","contributorId":192082,"corporation":false,"usgs":false,"family":"Price","given":"James","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":695413,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Paladino, Frank V.","contributorId":192083,"corporation":false,"usgs":false,"family":"Paladino","given":"Frank","email":"","middleInitial":"V.","affiliations":[],"preferred":false,"id":695414,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Lamont, Margaret M. 0000-0001-7520-6669 mlamont@usgs.gov","orcid":"https://orcid.org/0000-0001-7520-6669","contributorId":4525,"corporation":false,"usgs":true,"family":"Lamont","given":"Margaret","email":"mlamont@usgs.gov","middleInitial":"M.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":695412,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Witherington, Blair E.","contributorId":192084,"corporation":false,"usgs":false,"family":"Witherington","given":"Blair","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":695415,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Bates, Scott T.","contributorId":138707,"corporation":false,"usgs":false,"family":"Bates","given":"Scott","email":"","middleInitial":"T.","affiliations":[{"id":12503,"text":"University of Minnesota - Saint Paul","active":true,"usgs":false}],"preferred":false,"id":695416,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Soule, Tanya","contributorId":192085,"corporation":false,"usgs":false,"family":"Soule","given":"Tanya","email":"","affiliations":[],"preferred":false,"id":695417,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}} ,{"id":70187710,"text":"70187710 - 2017 - Habitat degradation affects the summer activity of polar bears","interactions":[],"lastModifiedDate":"2018-04-21T13:18:43","indexId":"70187710","displayToPublicDate":"2017-05-16T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2932,"text":"Oecologia","active":true,"publicationSubtype":{"id":10}},"title":"Habitat degradation affects the summer activity of polar bears","docAbstract":"Understanding behavioral responses of species to environmental change is critical to forecasting population-level effects. Although climate change is significantly impacting species’ distributions, few studies have examined associated changes in behavior. Polar bear (Ursus maritimus) subpopulations have varied in their near-term responses to sea ice decline. We examined behavioral responses of two adjacent subpopulations to changes in habitat availability during the annual sea ice minimum using activity data. Location and activity sensor data collected from 1989 to 2014 for 202 adult female polar bears in the Southern Beaufort Sea (SB) and Chukchi Sea (CS) subpopulations were used to compare activity in three habitat types varying in prey availability: (1) land; (2) ice over shallow, biologically productive waters; and (3) ice over deeper, less productive waters. Bears varied activity across and within habitats with the highest activity at 50–75% sea ice concentration over shallow waters. On land, SB bears exhibited variable but relatively high activity associated with the use of subsistence-harvested bowhead whale carcasses, whereas CS bears exhibited low activity consistent with minimal feeding. Both subpopulations had fewer observations in their preferred shallow-water sea ice habitats in recent years, corresponding with declines in availability of this substrate. The substantially higher use of marginal habitats by SB bears is an additional mechanism potentially explaining why this subpopulation has experienced negative effects of sea ice loss compared to the still-productive CS subpopulation. Variability in activity among, and within, habitats suggests that bears alter their behavior in response to habitat conditions, presumably in an attempt to balance prey availability with energy costs.
","language":"English","publisher":"Springer","doi":"10.1007/s00442-017-3839-y","usgsCitation":"Ware, J.V., Rode, K.D., Bromaghin, J.F., Douglas, D.C., Wilson, R.H., Regehr, E.V., Amstrup, S.C., Durner, G.M., Pagano, A.M., Olson, J., Robbins, C.T., and Jansen, H.T., 2017, Habitat degradation affects the summer activity of polar bears: Oecologia, v. 184, no. 1, p. 87-99, https://doi.org/10.1007/s00442-017-3839-y.","productDescription":"13 p.","startPage":"87","endPage":"99","ipdsId":"IP-073535","costCenters":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"links":[{"id":438339,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7B27SCH","text":"USGS data release","linkHelpText":"Summer Activity Sensor Data from Collars Deployed on Female Polar Bears in the Chukchi Sea 1989 to 1995 and Southern Beaufort Sea 1989 to 2014"},{"id":341342,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"otherGeospatial":"Chukchi Sea, Southern Beaufort Sea","volume":"184","issue":"1","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2017-02-28","publicationStatus":"PW","scienceBaseUri":"591c0fc8e4b0a7fdb43ddeea","contributors":{"authors":[{"text":"Ware, Jasmine V.","contributorId":192039,"corporation":false,"usgs":false,"family":"Ware","given":"Jasmine","email":"","middleInitial":"V.","affiliations":[],"preferred":false,"id":695205,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Rode, Karyn D. 0000-0002-3328-8202 krode@usgs.gov","orcid":"https://orcid.org/0000-0002-3328-8202","contributorId":5053,"corporation":false,"usgs":true,"family":"Rode","given":"Karyn","email":"krode@usgs.gov","middleInitial":"D.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":695204,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bromaghin, Jeffrey F. 0000-0002-7209-9500 jbromaghin@usgs.gov","orcid":"https://orcid.org/0000-0002-7209-9500","contributorId":139899,"corporation":false,"usgs":true,"family":"Bromaghin","given":"Jeffrey","email":"jbromaghin@usgs.gov","middleInitial":"F.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":695206,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Douglas, David C. 0000-0003-0186-1104 ddouglas@usgs.gov","orcid":"https://orcid.org/0000-0003-0186-1104","contributorId":2388,"corporation":false,"usgs":true,"family":"Douglas","given":"David","email":"ddouglas@usgs.gov","middleInitial":"C.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":695207,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Wilson, Ryan H. 0000-0001-7740-7771","orcid":"https://orcid.org/0000-0001-7740-7771","contributorId":130989,"corporation":false,"usgs":false,"family":"Wilson","given":"Ryan","email":"","middleInitial":"H.","affiliations":[{"id":6987,"text":"U.S. Fish and Wildlife Sevice","active":true,"usgs":false}],"preferred":false,"id":695208,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Regehr, Eric V. 0000-0003-4487-3105","orcid":"https://orcid.org/0000-0003-4487-3105","contributorId":66364,"corporation":false,"usgs":false,"family":"Regehr","given":"Eric","email":"","middleInitial":"V.","affiliations":[{"id":12428,"text":"U. S. Fish and Wildlife Service","active":true,"usgs":false}],"preferred":false,"id":695209,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Amstrup, Steven C.","contributorId":67034,"corporation":false,"usgs":false,"family":"Amstrup","given":"Steven","email":"","middleInitial":"C.","affiliations":[{"id":13182,"text":"Polar Bears International","active":true,"usgs":false}],"preferred":false,"id":695210,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Durner, George M. 0000-0002-3370-1191 gdurner@usgs.gov","orcid":"https://orcid.org/0000-0002-3370-1191","contributorId":3576,"corporation":false,"usgs":true,"family":"Durner","given":"George","email":"gdurner@usgs.gov","middleInitial":"M.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":695211,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Pagano, Anthony M. 0000-0003-2176-0909 apagano@usgs.gov","orcid":"https://orcid.org/0000-0003-2176-0909","contributorId":3884,"corporation":false,"usgs":true,"family":"Pagano","given":"Anthony","email":"apagano@usgs.gov","middleInitial":"M.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":695212,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Olson, Jay","contributorId":150116,"corporation":false,"usgs":false,"family":"Olson","given":"Jay","affiliations":[{"id":6681,"text":"Brigham Young University","active":true,"usgs":false}],"preferred":false,"id":695213,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Robbins, Charles T.","contributorId":124585,"corporation":false,"usgs":false,"family":"Robbins","given":"Charles","email":"","middleInitial":"T.","affiliations":[{"id":5127,"text":"Washington State University, P.O. Box 644236, Pullman, WA 99164","active":true,"usgs":false}],"preferred":false,"id":695214,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Jansen, Heiko T","contributorId":192040,"corporation":false,"usgs":false,"family":"Jansen","given":"Heiko","email":"","middleInitial":"T","affiliations":[],"preferred":false,"id":695215,"contributorType":{"id":1,"text":"Authors"},"rank":12}]}} ,{"id":70187745,"text":"70187745 - 2017 - Long-term and widespread changes in agricultural practices influence ring-necked pheasant abundance in California","interactions":[],"lastModifiedDate":"2017-05-16T15:32:39","indexId":"70187745","displayToPublicDate":"2017-05-16T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1467,"text":"Ecology and Evolution","active":true,"publicationSubtype":{"id":10}},"title":"Long-term and widespread changes in agricultural practices influence ring-necked pheasant abundance in California","docAbstract":"Declines in bird populations in agricultural regions of North America and Europe have been attributed to agricultural industrialization, increases in use of agrochemical application, and increased predation related to habitat modification. Based on count data compiled from Breeding Bird Survey (BBS) from 1974 to 2012, Christmas Bird Count (CBC) collected from 1914 to 2013, and hunter data from Annual Game Take Survey (AGTS) for years 1948–2010, ring-necked pheasants (Phasianus colchicus) in California have experienced substantial declines in agricultural environments. Using a modeling approach that integrates all three forms of survey data into a joint response abundance index, we found pheasant abundance was related to the amount of harvested and unharvested crop land, types of crops produced, amount of total pesticide applied, minimum temperature, precipitation, and numbers of avian competitors and predators. Specifically, major changes in agricultural practices over the last three decades were associated with declines in pheasant numbers and likely reflected widespread loss of habitat. For example, increases in cropland were associated with increased pheasant abundance during early years of study but this effect decreased through time, such that no association in recent years was evidenced. A post hoc analysis revealed that crops beneficial to pheasant abundance (e.g., barley) have declined substantially in recent decades and were replaced by less advantageous crops (e.g., nut trees). An additional analysis using a restricted data set (1990–2013) indicated recent negative impacts on pheasant numbers associated with land use practices were also associated with relatively high levels of pesticide application. Our results may provide valuable information for management policies aimed at reducing widespread declines in pheasant populations in California and may be applicable to other avian species within agricultural settings. Furthermore, this general analytical approach is not limited to pheasants and could be applied to other taxa for which multiple survey data sources exist.
","language":"English","publisher":"Wiley","doi":"10.1002/ece3.2675","usgsCitation":"Coates, P.S., Brussee, B.E., Howe, K., Fleskes, J., Dwight, I., Connelly, D.P., Meshriy, M., and Gardner, S.C., 2017, Long-term and widespread changes in agricultural practices influence ring-necked pheasant abundance in California: Ecology and Evolution, v. 7, no. 8, p. 2546-2559, https://doi.org/10.1002/ece3.2675.","productDescription":"14 p.","startPage":"2546","endPage":"2559","ipdsId":"IP-075891","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":461589,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ece3.2675","text":"Publisher Index Page"},{"id":341391,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"MultiPolygon\",\"coordinates\":[[[[-122.421439,37.869969],[-122.41847,37.852721],[-122.434403,37.852434],[-122.446316,37.861046],[-122.430958,37.872242],[-122.421439,37.869969]]],[[[-122.3785,37.826505],[-122.377879,37.830648],[-122.369941,37.832137],[-122.358779,37.814278],[-122.362661,37.807577],[-122.372422,37.811301],[-122.3785,37.826505]]],[[[-120.248484,33.999329],[-120.230001,34.010136],[-120.19578,34.004284],[-120.167306,34.008219],[-120.147647,34.024831],[-120.140362,34.025974],[-120.115058,34.019866],[-120.090182,34.019806],[-120.073609,34.024477],[-120.057637,34.03734],[-120.043259,34.035806],[-120.050382,34.013331],[-120.046575,34.000002],[-120.011123,33.979894],[-119.978876,33.983081],[-119.979913,33.969623],[-119.97026,33.944359],[-120.017715,33.936366],[-120.048611,33.915775],[-120.098601,33.907853],[-120.121817,33.895712],[-120.168974,33.91909],[-120.224461,33.989059],[-120.248484,33.999329]]],[[[-119.789798,34.05726],[-119.755521,34.056716],[-119.712576,34.043265],[-119.686507,34.019805],[-119.637742,34.013178],[-119.612226,34.021256],[-119.604287,34.031561],[-119.608798,34.035245],[-119.59324,34.049625],[-119.5667,34.053452],[-119.52064,34.034262],[-119.542449,34.021082],[-119.547072,34.005469],[-119.560464,33.99553],[-119.575636,33.996009],[-119.596877,33.988611],[-119.662825,33.985889],[-119.721206,33.959583],[-119.742966,33.963877],[-119.758141,33.959212],[-119.842748,33.97034],[-119.873358,33.980375],[-119.884896,34.008814],[-119.876329,34.032087],[-119.916216,34.058351],[-119.923337,34.069361],[-119.919155,34.07728],[-119.912857,34.077508],[-119.857304,34.071298],[-119.825865,34.059794],[-119.818742,34.052997],[-119.789798,34.05726]]],[[[-120.46258,34.042627],[-120.440248,34.036918],[-120.415287,34.05496],[-120.403613,34.050442],[-120.390906,34.051994],[-120.368813,34.06778],[-120.370176,34.074907],[-120.362251,34.073056],[-120.354982,34.059256],[-120.36029,34.05582],[-120.358608,34.050235],[-120.346946,34.046576],[-120.331161,34.049097],[-120.302122,34.023574],[-120.317052,34.018837],[-120.347706,34.020114],[-120.35793,34.015029],[-120.409368,34.032198],[-120.427408,34.025425],[-120.454134,34.028081],[-120.465329,34.038448],[-120.46258,34.042627]]],[[[-118.524531,32.895488],[-118.535823,32.90628],[-118.551134,32.945155],[-118.573522,32.969183],[-118.586928,33.008281],[-118.596037,33.015357],[-118.606559,33.01469],[-118.605534,33.030999],[-118.594033,33.035951],[-118.57516,33.033961],[-118.569013,33.029151],[-118.559171,33.006291],[-118.540069,32.980933],[-118.496811,32.933847],[-118.369984,32.839273],[-118.353504,32.821962],[-118.356541,32.817311],[-118.379968,32.824545],[-118.394565,32.823978],[-118.425634,32.800595],[-118.44492,32.820593],[-118.496298,32.851572],[-118.507193,32.876264],[-118.524531,32.895488]]],[[[-118.500212,33.449592],[-118.477646,33.448392],[-118.445812,33.428907],[-118.423576,33.427258],[-118.382037,33.409883],[-118.370323,33.409285],[-118.365094,33.388374],[-118.310213,33.335795],[-118.303174,33.320264],[-118.305084,33.310323],[-118.325244,33.299075],[-118.374768,33.320065],[-118.440047,33.318638],[-118.465368,33.326056],[-118.48877,33.356649],[-118.478465,33.38632],[-118.48875,33.419826],[-118.515914,33.422417],[-118.52323,33.430733],[-118.53738,33.434608],[-118.563442,33.434381],[-118.60403,33.47654],[-118.54453,33.474119],[-118.500212,33.449592]]],[[[-119.543842,33.280329],[-119.528141,33.284929],[-119.465717,33.259239],[-119.429559,33.228167],[-119.444269,33.21919],[-119.476029,33.21552],[-119.545872,33.233406],[-119.564971,33.24744],[-119.578942,33.278628],[-119.562042,33.271129],[-119.543842,33.280329]]],[[[-122.289533,42.007764],[-121.035195,41.993323],[-120.001058,41.995139],[-119.995926,40.499901],[-120.005743,39.228664],[-120.001014,38.999574],[-119.333423,38.538328],[-118.714312,38.102185],[-117.875927,37.497267],[-117.244917,37.030244],[-116.488233,36.459097],[-115.852908,35.96966],[-115.102881,35.379371],[-114.633013,35.002085],[-114.629015,34.986148],[-114.634953,34.958918],[-114.629753,34.938684],[-114.635176,34.875003],[-114.623939,34.859738],[-114.586842,34.835672],[-114.57101,34.794294],[-114.552682,34.766871],[-114.516619,34.736745],[-114.470477,34.711368],[-114.452628,34.668546],[-114.451753,34.654321],[-114.441465,34.64253],[-114.438739,34.621455],[-114.424202,34.610453],[-114.429747,34.591734],[-114.422382,34.580711],[-114.405228,34.569637],[-114.380838,34.529724],[-114.378124,34.507288],[-114.386699,34.457911],[-114.375789,34.447798],[-114.335372,34.450038],[-114.32613,34.437251],[-114.294836,34.421389],[-114.286802,34.40534],[-114.264317,34.401329],[-114.226107,34.365916],[-114.199482,34.361373],[-114.176909,34.349306],[-114.157206,34.317862],[-114.138282,34.30323],[-114.134768,34.268965],[-114.139055,34.259538],[-114.159697,34.258242],[-114.223384,34.205136],[-114.229715,34.186928],[-114.254141,34.173831],[-114.287294,34.170529],[-114.320777,34.138635],[-114.353031,34.133121],[-114.366521,34.118575],[-114.390565,34.110084],[-114.411681,34.110031],[-114.43338,34.088413],[-114.43934,34.057893],[-114.434949,34.037784],[-114.438266,34.022609],[-114.46283,34.008421],[-114.46117,33.994687],[-114.499883,33.961789],[-114.522002,33.955623],[-114.535478,33.934651],[-114.533679,33.926072],[-114.508558,33.906098],[-114.518555,33.889847],[-114.50434,33.876882],[-114.503017,33.867998],[-114.514673,33.858638],[-114.52453,33.858477],[-114.529597,33.848063],[-114.520465,33.827778],[-114.527161,33.816191],[-114.504863,33.760465],[-114.504483,33.750998],[-114.512348,33.734214],[-114.496565,33.719155],[-114.494197,33.707922],[-114.495719,33.698454],[-114.523959,33.685879],[-114.531523,33.675108],[-114.525201,33.661583],[-114.530244,33.65014],[-114.526947,33.637534],[-114.529662,33.622794],[-114.524813,33.611351],[-114.540617,33.591412],[-114.5403,33.580615],[-114.524391,33.553683],[-114.558898,33.531819],[-114.560552,33.518272],[-114.569533,33.509219],[-114.591554,33.499443],[-114.622918,33.456561],[-114.627125,33.433554],[-114.635183,33.422726],[-114.652828,33.412922],[-114.687953,33.417944],[-114.701732,33.408388],[-114.725535,33.404056],[-114.708408,33.384147],[-114.698035,33.352442],[-114.707962,33.323421],[-114.731223,33.302434],[-114.723259,33.288079],[-114.684363,33.276025],[-114.672401,33.26047],[-114.689421,33.24525],[-114.674479,33.225504],[-114.678749,33.203448],[-114.675831,33.18152],[-114.679359,33.159519],[-114.703682,33.113769],[-114.706488,33.08816],[-114.68902,33.084036],[-114.686991,33.070969],[-114.674296,33.057171],[-114.673659,33.041897],[-114.662317,33.032671],[-114.64598,33.048903],[-114.618788,33.027202],[-114.589778,33.026228],[-114.575161,33.036542],[-114.52013,33.029984],[-114.502871,33.011153],[-114.492938,32.971781],[-114.476156,32.975168],[-114.467664,32.966861],[-114.469113,32.952673],[-114.48074,32.937027],[-114.47664,32.923628],[-114.462929,32.907944],[-114.468971,32.845155],[-114.494116,32.823288],[-114.510217,32.816417],[-114.530755,32.793485],[-114.532432,32.776923],[-114.526856,32.757094],[-114.539093,32.756949],[-114.539224,32.749812],[-114.564447,32.749554],[-114.564508,32.742298],[-114.581736,32.742321],[-114.581784,32.734946],[-114.612697,32.734516],[-114.618373,32.728245],[-114.688779,32.737675],[-114.701918,32.745548],[-114.719633,32.718763],[-116.04662,32.623353],[-117.124862,32.534156],[-117.136664,32.618754],[-117.168866,32.671952],[-117.196767,32.688851],[-117.213068,32.687751],[-117.236239,32.671353],[-117.246069,32.669352],[-117.25757,32.72605],[-117.25257,32.752949],[-117.25497,32.786948],[-117.26107,32.803148],[-117.280971,32.822247],[-117.28217,32.839547],[-117.27387,32.851447],[-117.26497,32.848947],[-117.25617,32.859447],[-117.25167,32.874346],[-117.25447,32.900146],[-117.28077,33.012343],[-117.315278,33.093504],[-117.328359,33.121842],[-117.362572,33.168437],[-117.469794,33.296417],[-117.50565,33.334063],[-117.547693,33.365491],[-117.59588,33.386629],[-117.607905,33.406317],[-117.645582,33.440728],[-117.684584,33.461927],[-117.691984,33.456627],[-117.715349,33.460556],[-117.726486,33.483427],[-117.784888,33.541525],[-117.814188,33.552224],[-117.840289,33.573523],[-117.87679,33.592322],[-117.927091,33.605521],[-117.940591,33.620021],[-118.000593,33.654319],[-118.029694,33.676418],[-118.088896,33.729817],[-118.132698,33.753217],[-118.180831,33.763072],[-118.187701,33.749218],[-118.181367,33.717367],[-118.207476,33.716905],[-118.258687,33.703741],[-118.317205,33.712818],[-118.360505,33.736817],[-118.385006,33.741417],[-118.396606,33.735917],[-118.411211,33.741985],[-118.428407,33.774715],[-118.405007,33.800215],[-118.394376,33.804289],[-118.392107,33.840915],[-118.460611,33.969111],[-118.482729,33.995912],[-118.519514,34.027509],[-118.543115,34.038508],[-118.569235,34.04164],[-118.609652,34.036424],[-118.668358,34.038887],[-118.706215,34.029383],[-118.744952,34.032103],[-118.783433,34.021543],[-118.805114,34.001239],[-118.854653,34.034215],[-118.928048,34.045847],[-118.938081,34.043383],[-119.004644,34.066231],[-119.037494,34.083111],[-119.088536,34.09831],[-119.109784,34.094566],[-119.130169,34.100102],[-119.18864,34.139005],[-119.216441,34.146105],[-119.257043,34.213304],[-119.278644,34.266902],[-119.290945,34.274902],[-119.313034,34.275689],[-119.337475,34.290576],[-119.370356,34.319486],[-119.388249,34.317398],[-119.42777,34.353016],[-119.461036,34.374064],[-119.536957,34.395495],[-119.559459,34.413395],[-119.616862,34.420995],[-119.638864,34.415696],[-119.671866,34.416096],[-119.688167,34.412497],[-119.684666,34.408297],[-119.709067,34.395397],[-119.729369,34.395897],[-119.794771,34.417597],[-119.835771,34.415796],[-119.853771,34.407996],[-119.873971,34.408795],[-119.925227,34.433931],[-119.956433,34.435288],[-120.008077,34.460447],[-120.038828,34.463434],[-120.088591,34.460208],[-120.141165,34.473405],[-120.25777,34.467451],[-120.295051,34.470623],[-120.341369,34.458789],[-120.471376,34.447846],[-120.47661,34.475131],[-120.511421,34.522953],[-120.581293,34.556959],[-120.622575,34.554017],[-120.637805,34.56622],[-120.645739,34.581035],[-120.640244,34.604406],[-120.60197,34.692095],[-120.60045,34.70464],[-120.614852,34.730709],[-120.62632,34.738072],[-120.637415,34.755895],[-120.616296,34.816308],[-120.610266,34.85818],[-120.616325,34.866739],[-120.639283,34.880413],[-120.647328,34.901133],[-120.670835,34.904115],[-120.63999,35.002963],[-120.629931,35.061515],[-120.630957,35.101941],[-120.644311,35.139616],[-120.651134,35.147768],[-120.662475,35.153357],[-120.675074,35.153061],[-120.698906,35.171192],[-120.714185,35.175998],[-120.74887,35.177795],[-120.754823,35.174701],[-120.756086,35.160459],[-120.760492,35.15971],[-120.778998,35.168897],[-120.786076,35.177666],[-120.856047,35.206487],[-120.89679,35.247877],[-120.862684,35.346776],[-120.866099,35.393045],[-120.884757,35.430196],[-120.907937,35.449069],[-120.946546,35.446715],[-120.969436,35.460197],[-121.003359,35.46071],[-121.101595,35.548814],[-121.126027,35.593058],[-121.143561,35.606046],[-121.166712,35.635399],[-121.251034,35.656641],[-121.284973,35.674109],[-121.289794,35.689428],[-121.314632,35.71331],[-121.315786,35.75252],[-121.332449,35.783106],[-121.388053,35.823483],[-121.413146,35.855316],[-121.439584,35.86695],[-121.462264,35.885618],[-121.461227,35.896906],[-121.472435,35.91989],[-121.4862,35.970348],[-121.503112,36.000299],[-121.531876,36.014368],[-121.574602,36.025156],[-121.590395,36.050363],[-121.592853,36.065062],[-121.606845,36.072065],[-121.618672,36.087767],[-121.629634,36.114452],[-121.680145,36.165818],[-121.717176,36.195146],[-121.779851,36.227407],[-121.797059,36.234211],[-121.813734,36.234235],[-121.826425,36.24186],[-121.851967,36.277831],[-121.874797,36.289064],[-121.888491,36.30281],[-121.894714,36.317806],[-121.892917,36.340428],[-121.905446,36.358269],[-121.903195,36.393603],[-121.914378,36.404344],[-121.91474,36.42589],[-121.9416,36.485602],[-121.938763,36.506423],[-121.944666,36.521861],[-121.925937,36.525173],[-121.932508,36.559935],[-121.942533,36.566435],[-121.957335,36.564482],[-121.978592,36.580488],[-121.970427,36.582754],[-121.941666,36.618059],[-121.93643,36.636746],[-121.923866,36.634559],[-121.890164,36.609259],[-121.889064,36.601759],[-121.860604,36.611136],[-121.831995,36.644856],[-121.814462,36.682858],[-121.807062,36.714157],[-121.805643,36.750239],[-121.788278,36.803994],[-121.809363,36.848654],[-121.862266,36.931552],[-121.894667,36.961851],[-121.930069,36.97815],[-121.95167,36.97145],[-121.972771,36.954151],[-122.012373,36.96455],[-122.023373,36.96215],[-122.027174,36.95115],[-122.050122,36.948523],[-122.105976,36.955951],[-122.155078,36.98085],[-122.20618,37.013949],[-122.252181,37.059448],[-122.284882,37.101747],[-122.306139,37.116383],[-122.337071,37.117382],[-122.337833,37.135936],[-122.359791,37.155574],[-122.367085,37.172817],[-122.390599,37.182988],[-122.405073,37.195791],[-122.407181,37.219465],[-122.419113,37.24147],[-122.411686,37.265844],[-122.40085,37.359225],[-122.423286,37.392542],[-122.443687,37.435941],[-122.452087,37.48054],[-122.472388,37.50054],[-122.493789,37.492341],[-122.499289,37.495341],[-122.516689,37.52134],[-122.519533,37.537302],[-122.513688,37.552239],[-122.517187,37.590637],[-122.501386,37.599637],[-122.494085,37.644035],[-122.496784,37.686433],[-122.514483,37.780829],[-122.50531,37.788312],[-122.485783,37.790629],[-122.478083,37.810828],[-122.463793,37.804653],[-122.407452,37.811441],[-122.398139,37.80563],[-122.385323,37.790724],[-122.375854,37.734979],[-122.356784,37.729505],[-122.361749,37.71501],[-122.370411,37.717572],[-122.391374,37.708331],[-122.387626,37.67906],[-122.374291,37.662206],[-122.3756,37.652389],[-122.387381,37.648462],[-122.386072,37.637662],[-122.35531,37.615736],[-122.358583,37.611155],[-122.373309,37.613773],[-122.378545,37.605592],[-122.360219,37.592501],[-122.317676,37.590865],[-122.305895,37.575484],[-122.262698,37.572866],[-122.214264,37.538505],[-122.196593,37.537196],[-122.194957,37.522469],[-122.168449,37.504143],[-122.155686,37.501198],[-122.140142,37.507907],[-122.127706,37.500053],[-122.111344,37.50758],[-122.111998,37.528851],[-122.147014,37.588411],[-122.145378,37.600846],[-122.152905,37.640771],[-122.163049,37.667933],[-122.246826,37.72193],[-122.257953,37.739601],[-122.257134,37.745001],[-122.242638,37.753744],[-122.253753,37.761218],[-122.293996,37.770416],[-122.330963,37.786035],[-122.33555,37.799538],[-122.333711,37.809797],[-122.323567,37.823214],[-122.303931,37.830087],[-122.301313,37.847758],[-122.310477,37.873938],[-122.309986,37.892755],[-122.32373,37.905845],[-122.33453,37.908791],[-122.35711,37.908791],[-122.367582,37.903882],[-122.385908,37.908136],[-122.39049,37.922535],[-122.413725,37.937262],[-122.430087,37.963115],[-122.415361,37.963115],[-122.399832,37.956009],[-122.367582,37.978168],[-122.361905,37.989991],[-122.367909,38.01253],[-122.340093,38.003694],[-122.321112,38.012857],[-122.300823,38.010893],[-122.283478,38.022674],[-122.262861,38.0446],[-122.273006,38.07438],[-122.314567,38.115287],[-122.366273,38.141467],[-122.39638,38.149976],[-122.403514,38.150624],[-122.409798,38.136231],[-122.439577,38.116923],[-122.454958,38.118887],[-122.489974,38.112014],[-122.483757,38.071762],[-122.499465,38.032165],[-122.497828,38.019402],[-122.481466,38.007621],[-122.462812,38.003367],[-122.452995,37.996167],[-122.448413,37.984713],[-122.456595,37.978823],[-122.471975,37.981768],[-122.488665,37.966714],[-122.487684,37.948716],[-122.479175,37.941516],[-122.48572,37.937589],[-122.499465,37.939225],[-122.503064,37.928753],[-122.478193,37.918608],[-122.471975,37.910427],[-122.472303,37.902573],[-122.458558,37.894064],[-122.448413,37.89341],[-122.438268,37.880974],[-122.45005,37.871157],[-122.462158,37.868866],[-122.480811,37.873448],[-122.479151,37.825428],[-122.505383,37.822128],[-122.548986,37.836227],[-122.561487,37.851827],[-122.584289,37.859227],[-122.60129,37.875126],[-122.656519,37.904519],[-122.682171,37.90645],[-122.70264,37.89382],[-122.727297,37.904626],[-122.736898,37.925825],[-122.766138,37.938004],[-122.783244,37.951334],[-122.797405,37.976657],[-122.821383,37.996735],[-122.856573,38.016717],[-122.882114,38.025273],[-122.939711,38.031908],[-122.956811,38.02872],[-122.981776,38.009119],[-122.97439,37.992429],[-123.024066,37.994878],[-123.011533,38.003438],[-122.99242,38.041758],[-122.960889,38.112962],[-122.949074,38.15406],[-122.953629,38.17567],[-122.965408,38.187113],[-122.968112,38.202428],[-122.993959,38.237602],[-122.968569,38.242879],[-122.967203,38.250691],[-122.977082,38.267902],[-122.986319,38.273164],[-123.002911,38.295708],[-123.024333,38.310573],[-123.038742,38.313576],[-123.051061,38.310693],[-123.053504,38.299385],[-123.063671,38.302178],[-123.074684,38.322574],[-123.068437,38.33521],[-123.068265,38.359865],[-123.128825,38.450418],[-123.202277,38.494314],[-123.249797,38.511045],[-123.287156,38.540223],[-123.331899,38.565542],[-123.343338,38.590008],[-123.371876,38.607235],[-123.398166,38.647044],[-123.441774,38.699744],[-123.461291,38.717001],[-123.514784,38.741966],[-123.541837,38.776764],[-123.579856,38.802835],[-123.58638,38.802857],[-123.605317,38.822765],[-123.647387,38.845472],[-123.659846,38.872529],[-123.71054,38.91323],[-123.725367,38.917438],[-123.726315,38.936367],[-123.738886,38.95412],[-123.729053,38.956667],[-123.711149,38.977316],[-123.6969,39.004401],[-123.690095,39.031157],[-123.693969,39.057363],[-123.713392,39.108422],[-123.721505,39.125327],[-123.737913,39.143442],[-123.742221,39.164885],[-123.765891,39.193657],[-123.774998,39.212083],[-123.777368,39.237214],[-123.787893,39.264327],[-123.803848,39.278771],[-123.803081,39.291747],[-123.811387,39.312825],[-123.808772,39.324368],[-123.822085,39.343857],[-123.826306,39.36871],[-123.81469,39.446538],[-123.766475,39.552803],[-123.787417,39.604552],[-123.782322,39.621486],[-123.792659,39.684122],[-123.808208,39.710715],[-123.829545,39.723071],[-123.838089,39.752409],[-123.839797,39.795637],[-123.851714,39.832041],[-123.907664,39.863028],[-123.930047,39.909697],[-123.954952,39.922373],[-123.980031,39.962458],[-124.035904,40.013319],[-124.056408,40.024305],[-124.068908,40.021307],[-124.079983,40.029773],[-124.080709,40.06611],[-124.110549,40.103765],[-124.187874,40.130542],[-124.214895,40.160902],[-124.296497,40.208816],[-124.320912,40.226617],[-124.327691,40.23737],[-124.34307,40.243979],[-124.363414,40.260974],[-124.363634,40.276212],[-124.347853,40.314634],[-124.362796,40.350046],[-124.365357,40.374855],[-124.373599,40.392923],[-124.391496,40.407047],[-124.409591,40.438076],[-124.38494,40.48982],[-124.383224,40.499852],[-124.387023,40.504954],[-124.382816,40.519],[-124.329404,40.61643],[-124.158322,40.876069],[-124.137066,40.925732],[-124.118147,40.989263],[-124.112165,41.028173],[-124.125448,41.048504],[-124.138217,41.054342],[-124.153622,41.05355],[-124.154513,41.087159],[-124.160556,41.099011],[-124.159065,41.121957],[-124.165414,41.129822],[-124.158539,41.143021],[-124.149674,41.140845],[-124.1438,41.144686],[-124.106986,41.229678],[-124.072294,41.374844],[-124.063076,41.439579],[-124.066057,41.470258],[-124.081427,41.511228],[-124.081987,41.547761],[-124.092404,41.553615],[-124.101123,41.569192],[-124.097385,41.585251],[-124.100961,41.602499],[-124.114413,41.616768],[-124.120225,41.640354],[-124.135552,41.657307],[-124.147412,41.717955],[-124.164716,41.740126],[-124.17739,41.745756],[-124.194953,41.736778],[-124.23972,41.7708],[-124.248704,41.771459],[-124.255994,41.783014],[-124.245027,41.7923],[-124.230678,41.818681],[-124.208439,41.888192],[-124.203402,41.940964],[-124.204948,41.983441],[-124.211605,41.99846],[-123.656998,41.995137],[-123.624554,41.999837],[-123.347562,41.999108],[-123.145959,42.009247],[-123.045254,42.003049],[-122.893961,42.002605],[-122.289533,42.007764]]]]},\"properties\":{\"name\":\"California\",\"nation\":\"USA \"}}]}","volume":"7","issue":"8","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2017-03-15","publicationStatus":"PW","scienceBaseUri":"591c0fc6e4b0a7fdb43ddee4","contributors":{"authors":[{"text":"Coates, Peter S. 0000-0003-2672-9994 pcoates@usgs.gov","orcid":"https://orcid.org/0000-0003-2672-9994","contributorId":3263,"corporation":false,"usgs":true,"family":"Coates","given":"Peter","email":"pcoates@usgs.gov","middleInitial":"S.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695404,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Brussee, Brianne E. 0000-0002-2452-7101 bbrussee@usgs.gov","orcid":"https://orcid.org/0000-0002-2452-7101","contributorId":4249,"corporation":false,"usgs":true,"family":"Brussee","given":"Brianne","email":"bbrussee@usgs.gov","middleInitial":"E.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695405,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Howe, Kristy B.","contributorId":192078,"corporation":false,"usgs":false,"family":"Howe","given":"Kristy B.","affiliations":[],"preferred":false,"id":695408,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Fleskes, Joseph P. joe_fleskes@usgs.gov","contributorId":138999,"corporation":false,"usgs":true,"family":"Fleskes","given":"Joseph P.","email":"joe_fleskes@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":false,"id":695406,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Dwight, Ian 0000-0002-8393-5391 idwight@usgs.gov","orcid":"https://orcid.org/0000-0002-8393-5391","contributorId":192077,"corporation":false,"usgs":true,"family":"Dwight","given":"Ian","email":"idwight@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":695407,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Connelly, Daniel P.","contributorId":192079,"corporation":false,"usgs":false,"family":"Connelly","given":"Daniel","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":695409,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Meshriy, Matt G.","contributorId":192080,"corporation":false,"usgs":false,"family":"Meshriy","given":"Matt G.","affiliations":[],"preferred":false,"id":695410,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Gardner, Scott C.","contributorId":192081,"corporation":false,"usgs":false,"family":"Gardner","given":"Scott","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":695411,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}} ,{"id":70209864,"text":"70209864 - 2017 - Upper thermal limits of growth in brook trout and their relationship to stress physiology","interactions":[],"lastModifiedDate":"2020-05-04T11:50:27.035317","indexId":"70209864","displayToPublicDate":"2017-05-15T11:28:44","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2275,"text":"Journal of Experimental Biology","active":true,"publicationSubtype":{"id":10}},"title":"Upper thermal limits of growth in brook trout and their relationship to stress physiology","docAbstract":"Despite the threat of climate change, the physiological mechanisms responsible for reduced performance at high temperatures remain unclear for most species. Elevated but sublethal temperatures may act via endocrine and cellular stress responses to limit performance in important life-history traits such as growth. Here, brook trout (Salvelinus fontinalis) subjected to chronically elevated or daily oscillating temperatures were monitored for growth and physiological stress responses. Growth rate decreased at temperatures above 16°C and was negative at 24°C, with an estimated upper limit for positive growth of 23.4°C. Plasma cortisol increased with temperature and was 12- and 18-fold higher at 22 and 24°C, respectively, than at 16°C, whereas plasma glucose was unaffected by temperature. Abundance of heat shock protein 70 (HSP70) in the gill increased with temperature and was 11- and 56-fold higher at 22°C and 24°C, respectively, than at 16°C. There was no relationship between temperature and plasma Cl−, but there was a 53% and 80% decrease in gill Na+/K+-ATPase activity and abundance at 24°C in comparison with 16°C. Daily temperature oscillations of 4°C or 8°C (19–23°C or 17–25°C) were compared with 21°C controls. Growth rate decreased with temperature and was 43% and 35% lower by length and mass, respectively, in the 8°C daily oscillation treatment than in the controls. There was no effect of temperature oscillation on plasma cortisol or glucose levels. In contrast, gill HSP70 abundance increased with increasing daily oscillation and was 40- and 700-fold greater at 4°C and 8°C daily oscillation, respectively, than in the constant temperature controls. In individuals exposed to 17–25°C diel oscillations for 4 days and then allowed to recover at 21°C, gill HSP70 abundance was still elevated after 4 days recovery, but not after 10 days. Our results demonstrate that elevated temperatures induce cellular and endocrine stress responses and provide a possible mechanism by which growth is limited at elevated temperatures. Temperature limitations on growth may play a role in driving brook trout distributions in the wild.
","language":"English","publisher":"The Company of Biologists","doi":"10.1242/jeb.161224","usgsCitation":"Chadwick, J.G., and McCormick, S.D., 2017, Upper thermal limits of growth in brook trout and their relationship to stress physiology: Journal of Experimental Biology, v. 220, p. 3976-3987, https://doi.org/10.1242/jeb.161224.","productDescription":"12 p.","startPage":"3976","endPage":"3987","ipdsId":"IP-086037","costCenters":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"links":[{"id":374431,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"220","noUsgsAuthors":false,"publicationStatus":"PW","contributors":{"authors":[{"text":"Chadwick, Joseph G","contributorId":146738,"corporation":false,"usgs":false,"family":"Chadwick","given":"Joseph","email":"","middleInitial":"G","affiliations":[{"id":6932,"text":"University of Massachusetts, Amherst","active":true,"usgs":false}],"preferred":false,"id":788330,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McCormick, Stephen D. 0000-0003-0621-6200 smccormick@usgs.gov","orcid":"https://orcid.org/0000-0003-0621-6200","contributorId":139214,"corporation":false,"usgs":true,"family":"McCormick","given":"Stephen","email":"smccormick@usgs.gov","middleInitial":"D.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":788331,"contributorType":{"id":1,"text":"Authors"},"rank":2}]}} ,{"id":70187134,"text":"sir20175023 - 2017 - U.S. Geological Survey Karst Interest Group Proceedings, San Antonio, Texas, May 16–18, 2017","interactions":[],"lastModifiedDate":"2025-03-06T13:23:23.159237","indexId":"sir20175023","displayToPublicDate":"2017-05-15T09:15:00","publicationYear":"2017","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2017-5023","title":"U.S. Geological Survey Karst Interest Group Proceedings, San Antonio, Texas, May 16–18, 2017","docAbstract":"Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) and evaporites (gypsum, anhydrite, and halite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex. These factors involve biological, chemical, and physical changes that when combined with the diverse climatic regimes in which karst development has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains.
The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs have resulted in the most exceptional karst areas being designated as national or state parks. Tens of thousands of similar areas in the United States have been developed into commercial caverns and known privately owned caves. Both public and private properties provide access for scientists to study the flow of groundwater in situ. Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains.
Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and form unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas due to dissolution features that form direct pathways into karst aquifers can impact the ecosystem and water quality associated with these aquifers.
The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Groundwater Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as with other federal and state agencies, and with researchers from academia and institutes.
To accomplish its mission, the KIG has organized a series of workshops that have been held near nationally important karst areas. To date (2017) seven KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst areas. To increase non-USGS participation an effort was made for the workshops to be held at a university or institute beginning with the fourth workshop. Proceedings of the workshops are published by the USGS and are available online at the USGS publications warehouse https://pubs.er.usgs.gov/ by using the search term “karst interest group.”
The first KIG workshop was held in St. Petersburg, Florida, in 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held in 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley, and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held in 2005, in Rapid City, South Dakota, near evaporite karst features in limestones of the Madison Group in the Black Hills of South Dakota. The Rapid City KIG workshop included field trips to Wind Cave National Park and Jewel Cave National Monument, and featured a presentation by Thomas Casadevall, then USGS Central Region Director, on the status of Earth science at the USGS.
The fourth KIG workshop in 2008 was hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave led by Rickard Toomey and Rick Olsen, National Park Service. The fifth KIG workshop in 2011 was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River in the southern Ozarks, and a keynote presentation on paleokarst in the United States was delivered by Art and Peggy Palmer. The sixth KIG workshop was hosted by the National Cave and Karst Research Institute (NCKRI) in 2014, in Carlsbad, New Mexico. George Veni, Director of the NCKRI, served as a co-chair of the workshop with Eve Kuniansky of the USGS. The workshop featured speaker Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at the NCKRI, who addressed the future of karst research. The field trip on evaporite karst of the lower Pecos Valley was led by Lewis Land (NCKRI karst hydrologist), and the field trip on the geology of Carlsbad Caverns National Park was led by George Veni.
This current seventh KIG workshop is being held in San Antonio at the University of Texas at San Antonio (UTSA). This 2017 workshop is being hosted by the Department of Geological Sciences’ Student Geological Society (SGS), and student chapters of the American Association of Petroleum Geologists (AAPG) and Association of Engineering Geologists (AEG), with support by the UTSA Department of Geological Sciences and Center for Water Research. The UTSA student chapter presidents, Jose Silvestre (SGS), John Cooper (AAPG), and Tyler Mead (AEG) serve as co-chairs of the 2017 workshop with Eve Kuniansky of the USGS. The technical session committee is chaired by Eve Kuniansky, USGS, and includes Michael Bradley, Tom Byl, Rebecca Lambert, John Lane, and James Kaufmann, all USGS, and Patrick Tucci, retired USGS. The logistics committee includes Amy Clark, Yongli Gao, and Lance Lambert (Department Chair), UTSA Department of Geological Sciences; and Ryan Banta and Allan Clark, USGS, San Antonio, Texas. The field trip committee is chaired by Allan Clark and includes Amy Clark, Yongli Gao, and Keith Muehlestein, UTSA; Marcus Gary, Edwards Aquifer Authority and University of Texas at Austin; Ron Green, Southwest Research Institute; Geary Schindel, Edwards Aquifer Authority; and George Veni, NCKRI. Additionally, two organizations have assisted the UTSA student chapters in hosting the meeting by donating funds to the chapters: the Edwards Aquifer Authority, San Antonio, Texas, and the Barton Springs Edwards Aquifer Authority, Austin, Texas. Additionally, Yongli Gao, Center for Water Research and Department of Geological Sciences, UTSA, helped develop sessions on cave and karst research in China for this workshop. These proceedings could not have been accomplished without the assistance of Lawrence E. Spangler as co-editor who not only has subject matter expertise, but also serves as an editor with the USGS Science Publishing Network. We sincerely hope that this workshop continues to promote future collaboration among scientists of varied and diverse backgrounds, and improves our understanding of karst aquifer systems in the United States and its territories.
The extended abstracts of USGS authors were peer reviewed and approved for publication by the USGS. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to USGS editorial standards or stratigraphic nomenclature. However, all articles had a minimum of two peer reviews and were edited for consistency of appearance in the proceedings. The use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS Water Availability and Use Science Program funded the publication costs of the proceedings.
","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20175023","collaboration":"Prepared in cooperation with the Department of Geological Sciences at the University of Texas at San Antonio and hosted by the Student Geological Society and student chapters of the Association of Petroleum Geologists and the Association of Engineering Geologists","usgsCitation":"Kuniansky, E.L., and Spangler, L.E., eds., 2017, U.S. Geological Survey Karst Interest Group Proceedings, San Antonio, Texas, May 16–18, 2017: U.S. Geological Survey Scientific Investigations Report 2017–5023, 245 p., https://doi.org/10.3133/sir20175023.","productDescription":"iv, 245 p.","onlineOnly":"Y","additionalOnlineFiles":"N","ipdsId":"IP-080449","costCenters":[{"id":509,"text":"Office of the Associate Director for Water","active":true,"usgs":true}],"links":[{"id":340331,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2017/5023/coverthb2.jpg"},{"id":340332,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2017/5023/sir20175023.pdf","text":"Report","size":"8.57 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2017-5023"},{"id":438341,"rank":3,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7DZ06H6","text":"USGS data release","linkHelpText":"Data Rease for \"Isotopic constraints on middle Pleistocene cave evolution, paleohydrologic flow, and environmental conditions from Fitton Cave speleothems, Buffalo National River, Arkansas\""}],"contact":"Water Mission Area
U.S. Geological Survey
1770 Corporate Drive
Suite 500
Norcross, GA 30093
https://water.usgs.gov/ogw/karst/index
The 1981–2014 climatology and variability of the March–May eastern Horn of Africa boreal spring wet season are examined using precipitation, upper- and lower-level winds, low-level specific humidity, and convective available potential energy (CAPE), with the aim of better understanding the establishment of the wet season and the cause of the recent observed decline. At 850 mb, the development of the wet season is characterized by increasing specific humidity and winds that veer from northeasterly in February to southerly in June and advect moisture into the region, in agreement with an earlier study. Equally important, however, is a substantial weakening of the 200-mb climatological easterly winds in March. Likewise, the shutdown of the wet season coincides with the return of strong easterly winds in June. Similar changes are seen in the daily evolution of specific humidity and 200-mb wind when composited relative to the interannual wet season onset and end, with the easterlies decreasing (increasing) several days prior to the start (end) of the wet season. The 1981–2014 decrease in March–May precipitation has also coincided with an increase in 200-mb easterly winds, with no attendant change in specific humidity, leading to the conclusion that, while high values of specific humidity are an important ingredient of the wet season, the recent observed precipitation decline has resulted mostly from a strengthening of the 200-mb easterlies. This change in the easterly winds appears to be related to an increase in convection over the Indonesian region and in the associated outflow from that enhanced heat source.
Tri-axial accelerometers have been used to remotely identify the behaviors of a wide range of taxa. Assigning behaviors to accelerometer data often involves the use of captive animals or surrogate species, as their accelerometer signatures are generally assumed to be similar to those of their wild counterparts. However, this has rarely been tested. Validated accelerometer data are needed for polar bears Ursus maritimus to understand how habitat conditions may influence behavior and energy demands. We used accelerometer and water conductivity data to remotely distinguish 10 polar bear behaviors. We calibrated accelerometer and conductivity data collected from collars with behaviors observed from video-recorded captive polar bears and brown bears U. arctos, and with video from camera collars deployed on free-ranging polar bears on sea ice and on land. We used random forest models to predict behaviors and found strong ability to discriminate the most common wild polar bear behaviors using a combination of accelerometer and conductivity sensor data from captive or wild polar bears. In contrast, models using data from captive brown bears failed to reliably distinguish most active behaviors in wild polar bears. Our ability to discriminate behavior was greatest when species- and habitat-specific data from wild individuals were used to train models. Data from captive individuals may be suitable for calibrating accelerometers, but may provide reduced ability to discriminate some behaviors. The accelerometer calibrations developed here provide a method to quantify polar bear behaviors to evaluate the impacts of declines in Arctic sea ice.
","language":"English","publisher":"Inter Research","doi":"10.3354/esr00779","usgsCitation":"Pagano, A.M., Rode, K.D., Cutting, A., Owen, M., Jensen, S., Ware, J., Robbins, C., Durner, G.M., Atwood, T.C., Obbard, M., Middel, K., Thiemann, G., and Williams, T., 2017, Using tri-axial accelerometers to identify wild polar bear behaviors: Endangered Species Research, v. 32, p. 19-33, https://doi.org/10.3354/esr00779.","productDescription":"15 p.","startPage":"19","endPage":"33","ipdsId":"IP-075328","costCenters":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":37273,"text":"Advanced Research Computing (ARC)","active":true,"usgs":true}],"links":[{"id":469849,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.3354/esr00779","text":"Publisher Index Page"},{"id":341323,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"32","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"591abe31e4b0a7fdb43c8be5","contributors":{"authors":[{"text":"Pagano, Anthony M. 0000-0003-2176-0909 apagano@usgs.gov","orcid":"https://orcid.org/0000-0003-2176-0909","contributorId":3884,"corporation":false,"usgs":true,"family":"Pagano","given":"Anthony","email":"apagano@usgs.gov","middleInitial":"M.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":695220,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Rode, Karyn D. 0000-0002-3328-8202 krode@usgs.gov","orcid":"https://orcid.org/0000-0002-3328-8202","contributorId":5053,"corporation":false,"usgs":true,"family":"Rode","given":"Karyn","email":"krode@usgs.gov","middleInitial":"D.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":695221,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Cutting, A.","contributorId":192044,"corporation":false,"usgs":false,"family":"Cutting","given":"A.","email":"","affiliations":[{"id":33436,"text":"Oregon Zoo, Portland, OR","active":true,"usgs":false}],"preferred":false,"id":695222,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Owen, M.A.","contributorId":192045,"corporation":false,"usgs":false,"family":"Owen","given":"M.A.","email":"","affiliations":[{"id":13114,"text":"Institute for Conservation Research, San Diego Zoo Global","active":true,"usgs":false}],"preferred":false,"id":695223,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Jensen, S.","contributorId":192046,"corporation":false,"usgs":false,"family":"Jensen","given":"S.","email":"","affiliations":[{"id":33438,"text":"Alaska Zoo, Anchorage, AK","active":true,"usgs":false}],"preferred":false,"id":695224,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Ware, J.V.","contributorId":192047,"corporation":false,"usgs":false,"family":"Ware","given":"J.V.","email":"","affiliations":[{"id":5132,"text":"Washington State University, Pullman","active":true,"usgs":false}],"preferred":false,"id":695225,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Robbins, C.T.","contributorId":192048,"corporation":false,"usgs":false,"family":"Robbins","given":"C.T.","email":"","affiliations":[{"id":5132,"text":"Washington State University, Pullman","active":true,"usgs":false}],"preferred":false,"id":695226,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Durner, George M. 0000-0002-3370-1191 gdurner@usgs.gov","orcid":"https://orcid.org/0000-0002-3370-1191","contributorId":3576,"corporation":false,"usgs":true,"family":"Durner","given":"George","email":"gdurner@usgs.gov","middleInitial":"M.","affiliations":[{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true},{"id":114,"text":"Alaska Science Center","active":true,"usgs":true}],"preferred":true,"id":695227,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Atwood, Todd C. 0000-0002-1971-3110 tatwood@usgs.gov","orcid":"https://orcid.org/0000-0002-1971-3110","contributorId":4368,"corporation":false,"usgs":true,"family":"Atwood","given":"Todd","email":"tatwood@usgs.gov","middleInitial":"C.","affiliations":[{"id":114,"text":"Alaska Science Center","active":true,"usgs":true},{"id":116,"text":"Alaska Science Center Biology MFEB","active":true,"usgs":true}],"preferred":true,"id":695228,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Obbard, M.E.","contributorId":192049,"corporation":false,"usgs":false,"family":"Obbard","given":"M.E.","email":"","affiliations":[{"id":33441,"text":"Wildlife Research and Monitoring Section, Ontario Ministry of Natural Resources and Forestry, Trent University, Peterborough, ON, Canada","active":true,"usgs":false}],"preferred":false,"id":695229,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Middel, K.R.","contributorId":192050,"corporation":false,"usgs":false,"family":"Middel","given":"K.R.","email":"","affiliations":[{"id":33441,"text":"Wildlife Research and Monitoring Section, Ontario Ministry of Natural Resources and Forestry, Trent University, Peterborough, ON, Canada","active":true,"usgs":false}],"preferred":false,"id":695230,"contributorType":{"id":1,"text":"Authors"},"rank":11},{"text":"Thiemann, G.W.","contributorId":192051,"corporation":false,"usgs":false,"family":"Thiemann","given":"G.W.","affiliations":[{"id":27291,"text":"York University, Toronto, ON","active":true,"usgs":false}],"preferred":false,"id":695231,"contributorType":{"id":1,"text":"Authors"},"rank":12},{"text":"Williams, T.M.","contributorId":192052,"corporation":false,"usgs":false,"family":"Williams","given":"T.M.","email":"","affiliations":[{"id":6949,"text":"University of California, Santa Cruz","active":true,"usgs":false}],"preferred":false,"id":695232,"contributorType":{"id":1,"text":"Authors"},"rank":13}]}} ]}