{"pageNumber":"993","pageRowStart":"24800","pageSize":"25","recordCount":184914,"records":[{"id":70188085,"text":"70188085 - 2017 - Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah","interactions":[],"lastModifiedDate":"2017-07-10T14:48:40","indexId":"70188085","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":850,"text":"Applied and Environmental Microbiology","active":true,"publicationSubtype":{"id":10}},"title":"Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah","docAbstract":"<p><span>In November and December of 2013, a large mortality event involving 15,000 - 20,000 eared grebes (</span><i>Podiceps nigricollis</i><span>) occurred at the Great Salt Lake (GSL), UT. The onset of the outbreak in grebes was followed by a mortality event in &gt; 86 bald eagles (</span><i>Haliaeetus leucocephalus</i><span>). During the die-off, West Nile virus (WNV) was detected by RT-PCR or viral culture in carcasses of grebes and eagles submitted to the National Wildlife Health Center. However, no mosquito activity, the primary vector of WNV, was detected by the State of Utah's WNV monitoring program. Transmission of WNV has rarely been reported during the winter in North America in the absence of known mosquito activity; however, the size of this die-off, the habitat in which it occurred, and the species involved are unique. We experimentally investigated whether WNV could survive in water with a high saline content, as found at the GSL, and whether brine shrimp, the primary food of migrating eared grebes on the GSL, could have played a role in transmission of WNV to feeding birds. We found that WNV can survive up to 72 h at 4°C in water containing 30 — 150 ppt NaCl and brine shrimp, incubated with WNV in 30 ppt NaCl, may adsorb WNV to their cuticle and, through feeding, may infect epithelial cells of their gut. Both mechanisms may have potentiated the WNV die-off in migrating eared grebes on the GSL.</span></p>","language":"English","publisher":"American Society for Microbiology","doi":"10.1128/AEM.00705-17","usgsCitation":"Lund, M., Shearn-Bochsler, V.I., Dusek, R.J., Shivers, J., and Hofmeister, E.K., 2017, Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah: Applied and Environmental Microbiology, v. 83, no. 14, e00705-17, https://doi.org/10.1128/AEM.00705-17.","productDescription":"e00705-17","ipdsId":"IP-085737","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":461541,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1128/aem.00705-17","text":"Publisher Index Page"},{"id":341939,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Utah","otherGeospatial":"Great Salt Lake","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -113.15917968749999,\n              40.65147128144057\n            ],\n            [\n              -111.89300537109375,\n              40.65147128144057\n            ],\n            [\n              -111.89300537109375,\n              41.70982942509964\n            ],\n            [\n              -113.15917968749999,\n              41.70982942509964\n            ],\n            [\n              -113.15917968749999,\n              40.65147128144057\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"83","issue":"14","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592fd639e4b0e9bd0ea896cf","contributors":{"authors":[{"text":"Lund, Melissa 0000-0003-4577-2015 mlund@usgs.gov","orcid":"https://orcid.org/0000-0003-4577-2015","contributorId":177923,"corporation":false,"usgs":true,"family":"Lund","given":"Melissa","email":"mlund@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696616,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Shearn-Bochsler, Valerie I. 0000-0002-5590-6518 vbochsler@usgs.gov","orcid":"https://orcid.org/0000-0002-5590-6518","contributorId":3234,"corporation":false,"usgs":true,"family":"Shearn-Bochsler","given":"Valerie","email":"vbochsler@usgs.gov","middleInitial":"I.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696617,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Dusek, Robert J. 0000-0001-6177-7479 rdusek@usgs.gov","orcid":"https://orcid.org/0000-0001-6177-7479","contributorId":174374,"corporation":false,"usgs":true,"family":"Dusek","given":"Robert","email":"rdusek@usgs.gov","middleInitial":"J.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696618,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Shivers, Jan","contributorId":192487,"corporation":false,"usgs":false,"family":"Shivers","given":"Jan","email":"","affiliations":[],"preferred":false,"id":696619,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Hofmeister, Erik K. 0000-0002-6360-3912 ehofmeister@usgs.gov","orcid":"https://orcid.org/0000-0002-6360-3912","contributorId":3230,"corporation":false,"usgs":true,"family":"Hofmeister","given":"Erik","email":"ehofmeister@usgs.gov","middleInitial":"K.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696615,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70188087,"text":"70188087 - 2017 - Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses","interactions":[],"lastModifiedDate":"2017-10-08T11:44:30","indexId":"70188087","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2507,"text":"Journal of Wildlife Diseases","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Responses of juvenile black-tailed prairie dogs (<i>Cynomys ludovicianus</i>) to a commercially produced oral plague vaccine delivered at two doses","title":"Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses","docAbstract":"<p><span>We confirmed safety and immunogenicity of mass-produced vaccine baits carrying an experimental, commercial-source plague vaccine (RCN-F1/V307) expressing </span><i><i>Yersinia pestis</i></i><span> V and F1 antigens. Forty-five juvenile black-tailed prairie dogs (</span><i><i>Cynomys ludovicianus</i></i><span>) were randomly divided into three treatment groups (</span><i>n</i><span>=15 animals/group). Animals in the first group received one standard-dose vaccine bait (5×10</span><sup>7</sup><span> plaque-forming units [pfu]; STD). The second group received a lower-dose bait (1×10</span><sup>7</sup><span> pfu; LOW). In the third group, five animals received two standard-dose baits and 10 were left untreated but in contact. Two vaccine-treated and one untreated prairie dogs died during the study, but laboratory analyses ruled out vaccine involvement. Overall, 17 of 33 (52%; 95% confidence interval for binomial proportion [bCI] 34−69%) prairie dogs receiving vaccine-laden bait showed a positive anti-V antibody response on at least one sampling occasion after bait consumption, and eight (24%; bCI 11–42%) showed sustained antibody responses. The STD and LOW groups did not differ (</span><i>P</i><span>≥0.78) in their proportions of overall or sustained antibody responses after vaccine bait consumption. Serum from one of the nine (11%; bCI 0.3–48%) surviving untreated, in-contact prairie dogs also had detectable antibody on one sampling occasion. We did not observe any adverse effects related to oral vaccination.</span></p>","language":"English","publisher":"Wildlife Disease Association","doi":"10.7589/2017-02-033","usgsCitation":"Cardenas-Canales, E.M., Wolfe, L.L., W., T.D., Rocke, T.E., Abbott, R.C., and Miller, M.W., 2017, Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses: Journal of Wildlife Diseases, v. 53, no. 4, p. 916-920, https://doi.org/10.7589/2017-02-033.","productDescription":"5 p.","startPage":"916","endPage":"920","ipdsId":"IP-084994","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":469816,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.7589/2017-02-033","text":"Publisher Index Page"},{"id":341926,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"53","issue":"4","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592fd637e4b0e9bd0ea896c7","contributors":{"authors":[{"text":"Cardenas-Canales, Elsa M.","contributorId":192489,"corporation":false,"usgs":false,"family":"Cardenas-Canales","given":"Elsa","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":696625,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Wolfe, Lisa L.","contributorId":192490,"corporation":false,"usgs":false,"family":"Wolfe","given":"Lisa","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":696627,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"W., Tripp. Daniel","contributorId":192491,"corporation":false,"usgs":false,"family":"W.","given":"Tripp.","email":"","middleInitial":"Daniel","affiliations":[],"preferred":false,"id":696628,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Rocke, Tonie E. 0000-0003-3933-1563 trocke@usgs.gov","orcid":"https://orcid.org/0000-0003-3933-1563","contributorId":2665,"corporation":false,"usgs":true,"family":"Rocke","given":"Tonie","email":"trocke@usgs.gov","middleInitial":"E.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696624,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Abbott, Rachel C. 0000-0003-4820-9295 rabbott@usgs.gov","orcid":"https://orcid.org/0000-0003-4820-9295","contributorId":1183,"corporation":false,"usgs":true,"family":"Abbott","given":"Rachel","email":"rabbott@usgs.gov","middleInitial":"C.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696626,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Miller, Michael W.","contributorId":65218,"corporation":false,"usgs":true,"family":"Miller","given":"Michael","email":"","middleInitial":"W.","affiliations":[],"preferred":false,"id":696629,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70188897,"text":"70188897 - 2017 - Pliocene-Pleistocene water bodies and associated geologic deposits in Southern Israel and Southern Jordan","interactions":[],"lastModifiedDate":"2017-06-27T10:29:44","indexId":"70188897","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":5,"text":"Book chapter"},"publicationSubtype":{"id":24,"text":"Book Chapter"},"displayTitle":"Pliocene-Pleistocene water bodies and associated geologic deposits in Southern Israel and Southern Jordan","title":"Pliocene-Pleistocene water bodies and associated geologic deposits in Southern Israel and Southern Jordan","docAbstract":"<p>No abstract available.</p>","largerWorkType":{"id":4,"text":"Book"},"largerWorkTitle":"Quaternary of the Levant: Environments, Climate Change, and Humans","largerWorkSubtype":{"id":15,"text":"Monograph"},"language":"English","doi":"10.1017/9781316106754","isbn":"9781107090460","usgsCitation":"Rech, J.A., Ginat, H., Catlett, G., Mischke, S., Winer-Tully, E., and Pigati, J., 2017, Pliocene-Pleistocene water bodies and associated geologic deposits in Southern Israel and Southern Jordan, chap. <i>of</i> Quaternary of the Levant: Environments, Climate Change, and Humans, p. 115-126, https://doi.org/10.1017/9781316106754.","productDescription":"11 p. ","startPage":"115","endPage":"126","ipdsId":"IP-063920","costCenters":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"links":[{"id":461545,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://doi.org/10.1017/9781316106754","text":"External Repository"},{"id":342953,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"Israel, Jordan","geographicExtents":"{\"type\":\"FeatureCollection\",\"features\":[{\"type\":\"Feature\",\"geometry\":{\"type\":\"Polygon\",\"coordinates\":[[[34.9226,29.50133],[34.26543,31.21936],[34.55637,31.54882],[34.48811,31.60554],[34.75259,32.07293],[34.95542,32.82738],[35.09846,33.08054],[35.12605,33.0909],[35.46071,33.08904],[35.5528,33.26427],[35.8211,33.27743],[35.8364,32.86812],[35.7008,32.71601],[35.71992,32.70919],[36.83406,32.31294],[38.79234,33.37869],[39.19547,32.16101],[39.00489,32.01022],[37.00217,31.50841],[37.99885,30.5085],[37.66812,30.33867],[37.50358,30.00378],[36.74053,29.86528],[36.50121,29.50525],[36.06894,29.19749],[34.95604,29.35655],[34.9226,29.50133]]]},\"properties\":{\"name\":\"Israel\"}}]}","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-04","publicationStatus":"PW","scienceBaseUri":"59536ea7e4b062508e3c7a6d","contributors":{"editors":[{"text":"Enzel, Yehouda","contributorId":193584,"corporation":false,"usgs":false,"family":"Enzel","given":"Yehouda","email":"","affiliations":[],"preferred":false,"id":700887,"contributorType":{"id":2,"text":"Editors"},"rank":1},{"text":"Bar-Yosef, Ofer","contributorId":193585,"corporation":false,"usgs":false,"family":"Bar-Yosef","given":"Ofer","email":"","affiliations":[],"preferred":false,"id":700888,"contributorType":{"id":2,"text":"Editors"},"rank":2}],"authors":[{"text":"Rech, Jason A.","contributorId":117323,"corporation":false,"usgs":false,"family":"Rech","given":"Jason","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":700872,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Ginat, Hanan","contributorId":193579,"corporation":false,"usgs":false,"family":"Ginat","given":"Hanan","email":"","affiliations":[],"preferred":false,"id":700873,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Catlett, Gentry","contributorId":193580,"corporation":false,"usgs":false,"family":"Catlett","given":"Gentry","affiliations":[],"preferred":false,"id":700874,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Mischke, Steffen","contributorId":193581,"corporation":false,"usgs":false,"family":"Mischke","given":"Steffen","email":"","affiliations":[],"preferred":false,"id":700875,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Winer-Tully, Emily","contributorId":193582,"corporation":false,"usgs":false,"family":"Winer-Tully","given":"Emily","email":"","affiliations":[],"preferred":false,"id":700876,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Pigati, Jeffrey S. 0000-0001-5843-6219 jpigati@usgs.gov","orcid":"https://orcid.org/0000-0001-5843-6219","contributorId":149825,"corporation":false,"usgs":true,"family":"Pigati","given":"Jeffrey S.","email":"jpigati@usgs.gov","affiliations":[{"id":318,"text":"Geosciences and Environmental Change Science Center","active":true,"usgs":true}],"preferred":false,"id":700871,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70197041,"text":"70197041 - 2017 - A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems","interactions":[],"lastModifiedDate":"2018-05-15T08:38:39","indexId":"70197041","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1837,"text":"Global Change Biology","active":true,"publicationSubtype":{"id":10}},"title":"A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems","docAbstract":"<p><span>Conserving native biodiversity in the face of human‐ and climate‐related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal‐habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which connected, interacting collections of juxtaposed habitat patches are examined) provides a scientific foundation for addressing many disturbance‐related, ecologically based conservation problems. For example, if specific habitat types disproportionately increase biodiversity, these keystones should be incorporated into research and management plans. Our sampling of fish biodiversity and aquatic habitat along ten 3‐km sites within the Upper Neosho River subdrainage, KS, from June‐August 2013 yielded three generalizable ecological insights. First, specific types of mesohabitat patches (i.e., pool, riffle, run, and glide) were physically distinct and created unique mosaics of mesohabitats that varied across sites. Second, species richness was higher in riffle mesohabitats when mesohabitat size reflected field availability. Furthermore, habitat mosaics that included more riffles had greater habitat diversity and more fish species. Thus, riffles (&lt;5% of sampled area) acted as keystone habitats. Third, additional conceptual development, which we initiate here, can broaden the identification of keystone habitats across ecosystems and further operationalize this concept for research and conservation. Thus, adopting a mosaic approach can increase scientific understanding of organismal‐habitat relationships, maintain natural biodiversity, advance spatial ecology, and facilitate effective conservation of native biodiversity in human‐altered ecosystems.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/gcb.13846","usgsCitation":"Hitchman, S.M., Mather, M.E., Smith, J.M., and Fencl, J.S., 2017, A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems: Global Change Biology, v. 24, no. 1, p. 308-321, https://doi.org/10.1111/gcb.13846.","productDescription":"14 p.","startPage":"308","endPage":"321","ipdsId":"IP-077478","costCenters":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true}],"links":[{"id":354160,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Kansas","otherGeospatial":"Upper Neosho River","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -96.65771484375,\n              34.79576153473033\n            ],\n            [\n              -94.482421875,\n              34.79576153473033\n            ],\n            [\n              -94.482421875,\n              39.21523130910491\n            ],\n            [\n              -96.65771484375,\n              39.21523130910491\n            ],\n            [\n              -96.65771484375,\n              34.79576153473033\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"24","issue":"1","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2017-09-11","publicationStatus":"PW","scienceBaseUri":"5afee86ce4b0da30c1bfc44b","contributors":{"authors":[{"text":"Hitchman, Sean M.","contributorId":204805,"corporation":false,"usgs":false,"family":"Hitchman","given":"Sean","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":735344,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Mather, Martha E. 0000-0003-3027-0215 mather@usgs.gov","orcid":"https://orcid.org/0000-0003-3027-0215","contributorId":2580,"corporation":false,"usgs":true,"family":"Mather","given":"Martha","email":"mather@usgs.gov","middleInitial":"E.","affiliations":[{"id":198,"text":"Coop Res Unit Atlanta","active":true,"usgs":true},{"id":200,"text":"Coop Res Unit Seattle","active":true,"usgs":true}],"preferred":true,"id":735338,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Smith, Joseph M.","contributorId":106712,"corporation":false,"usgs":false,"family":"Smith","given":"Joseph","email":"","middleInitial":"M.","affiliations":[{"id":17855,"text":"School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA","active":true,"usgs":false},{"id":6932,"text":"University of Massachusetts, Amherst","active":true,"usgs":false}],"preferred":false,"id":735345,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Fencl, Jane S.","contributorId":166699,"corporation":false,"usgs":false,"family":"Fencl","given":"Jane","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":735346,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70188100,"text":"70188100 - 2017 - Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States","interactions":[],"lastModifiedDate":"2023-06-20T15:59:37.923166","indexId":"70188100","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3687,"text":"Veterinary Pathology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (<i>Streptopelia decaocto</i>) and rock pigeons (<i>Columba livia</i>) in the United States","title":"Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States","docAbstract":"<p><span>Pigeon paramyxovirus serotype 1 (PPMV-1) is a globally distributed, virulent member of the avian paramyxovirus serotype 1 serogroup that causes mortality in columbiformes and poultry. Following introduction into the United States in the mid-1980s, PPMV-1 rapidly spread causing numerous mortality events in Eurasian collared-doves (</span><i>Streptopelia decaocto</i><span>) (ECDOs) and rock pigeons (</span><i>Columba livia</i><span>) (ROPIs). The investigators reviewed pathological findings of 70 naturally infected, free-ranging columbiforms from 25 different mortality events in the United States. Immunohistochemistry targeting PPMV-1 nucleoprotein was used to determine the tissue distribution of the virus in a subset of 17 birds from 10 of the studied outbreaks. ECDOs (61 birds) and ROPIs (9 birds) were the only species in which PPMV-1-associated disease was confirmed by viral isolation and presence of histologic lesions. Acute to subacute tubulointerstitial nephritis and necrotizing pancreatitis were the most frequent histologic lesions, with immunolabeling of viral antigen in renal tubular epithelial cells and pancreatic acinar epithelium. Lymphoid depletion of bursa of Fabricius and spleen was common, but the presence of viral antigen in these organs was inconsistent among infected birds. Hepatocellular necrosis was occasionally present with immunolabeling of hypertrophic Kupffer cells, and immunopositive eosinophilic intracytoplasmic inclusion bodies were present in hepatocytes of 1 ECDO. Immunopositive lymphocytic choroiditis was present in 1 ECDO, while lymphocytic meningoencephalitis was frequent in ROPIs in absence of immunolabeling. This study demonstrates widespread presence of PPMV-1 antigen in association with histologic lesions, confirming the lethal potential of this virus in these particular bird species.</span></p>","language":"English","publisher":"SAGE Journals","doi":"10.1177/0300985817695782","usgsCitation":"Isidoro Ayza, M., Afonso, C., Stanton, J., Knowles, S., Ip, S., White, C.L., Fenton, H., Ruder, M., Dolinski, A.C., and Lankton, J.S., 2017, Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States: Veterinary Pathology, v. 54, no. 4, p. 695-703, https://doi.org/10.1177/0300985817695782.","productDescription":"9 p., Data Release","startPage":"695","endPage":"703","ipdsId":"IP-077200","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":469815,"rank":3,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1177/0300985817695782","text":"Publisher Index Page"},{"id":341922,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":344168,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7BR8R2B","text":"Natural infections with Pigeon Paramyxovirus-1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the USA: Data","description":"Data Release"}],"volume":"54","issue":"4","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationDate":"2017-04-06","publicationStatus":"PW","scienceBaseUri":"592fd635e4b0e9bd0ea896b0","contributors":{"authors":[{"text":"Isidoro Ayza, Marcos 0000-0002-9380-7254 misidoroayza@usgs.gov","orcid":"https://orcid.org/0000-0002-9380-7254","contributorId":192509,"corporation":false,"usgs":true,"family":"Isidoro Ayza","given":"Marcos","email":"misidoroayza@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696690,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Afonso, C.L.","contributorId":192510,"corporation":false,"usgs":false,"family":"Afonso","given":"C.L.","email":"","affiliations":[],"preferred":false,"id":696691,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Stanton, J.B.","contributorId":192511,"corporation":false,"usgs":false,"family":"Stanton","given":"J.B.","email":"","affiliations":[],"preferred":false,"id":696692,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Knowles, Susan 0000-0002-0254-6491 sknowles@usgs.gov","orcid":"https://orcid.org/0000-0002-0254-6491","contributorId":5254,"corporation":false,"usgs":true,"family":"Knowles","given":"Susan","email":"sknowles@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696695,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Ip, S. 0000-0003-4844-7533 hip@usgs.gov","orcid":"https://orcid.org/0000-0003-4844-7533","contributorId":727,"corporation":false,"usgs":true,"family":"Ip","given":"S.","email":"hip@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696697,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"White, C. LeAnn 0000-0002-5004-5165 clwhite@usgs.gov","orcid":"https://orcid.org/0000-0002-5004-5165","contributorId":4315,"corporation":false,"usgs":true,"family":"White","given":"C.","email":"clwhite@usgs.gov","middleInitial":"LeAnn","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696698,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Fenton, Heather","contributorId":192512,"corporation":false,"usgs":false,"family":"Fenton","given":"Heather","email":"","affiliations":[],"preferred":false,"id":696693,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Ruder, M.G.","contributorId":192513,"corporation":false,"usgs":false,"family":"Ruder","given":"M.G.","email":"","affiliations":[],"preferred":false,"id":696694,"contributorType":{"id":1,"text":"Authors"},"rank":8},{"text":"Dolinski, A. C.","contributorId":192516,"corporation":false,"usgs":false,"family":"Dolinski","given":"A.","email":"","middleInitial":"C.","affiliations":[],"preferred":false,"id":696702,"contributorType":{"id":1,"text":"Authors"},"rank":9},{"text":"Lankton, Julia S. 0000-0002-6843-4388 jlankton@usgs.gov","orcid":"https://orcid.org/0000-0002-6843-4388","contributorId":5888,"corporation":false,"usgs":true,"family":"Lankton","given":"Julia","email":"jlankton@usgs.gov","middleInitial":"S.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696689,"contributorType":{"id":1,"text":"Authors"},"rank":10}]}}
,{"id":70188101,"text":"70188101 - 2017 - Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California","interactions":[],"lastModifiedDate":"2017-07-10T14:49:25","indexId":"70188101","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2507,"text":"Journal of Wildlife Diseases","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Serosurvey for West Nile virus antibodies in Steller's Jays (<i>Cyanocitta stelleri</i>) captured in coastal California","title":"Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California","docAbstract":"<p><span>West Nile virus (WNV) was first detected in New York in 1999 and, during its expansion across the continental US, southern Canada, and Mexico, members of the Corvidae (ravens, crows, magpies, and jays) were frequently infected and highly susceptible to the virus. As part of a behavioral study of Steller's Jays (</span><i><i>Cyanocitta stelleri</i></i><span>) conducted from 2011–2014 in the coastal California counties of San Mateo and Santa Cruz, 380 Steller's Jays were captured and tested for antibodies to WNV. Using the wild bird IgG enzyme linked immunoassay, we failed to detect antibodies to WNV, indicating either that there was no previous exposure to the virus or that exposed birds had died.</span></p>","language":"English","publisher":"Wildlife Disease Association","doi":"10.7589/2016-06-139","usgsCitation":"West, E., Hofmeister, E.K., and Peery, M., 2017, Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California: Journal of Wildlife Diseases, v. 53, no. 3, p. 582-585, https://doi.org/10.7589/2016-06-139.","productDescription":"4 p.","startPage":"582","endPage":"585","ipdsId":"IP-076324","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":341921,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","volume":"53","issue":"3","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592fd634e4b0e9bd0ea896a9","contributors":{"authors":[{"text":"West, Elena","contributorId":192514,"corporation":false,"usgs":false,"family":"West","given":"Elena","email":"","affiliations":[],"preferred":false,"id":696700,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hofmeister, Erik K. 0000-0002-6360-3912 ehofmeister@usgs.gov","orcid":"https://orcid.org/0000-0002-6360-3912","contributorId":3230,"corporation":false,"usgs":true,"family":"Hofmeister","given":"Erik","email":"ehofmeister@usgs.gov","middleInitial":"K.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696699,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Peery, M. Zach","contributorId":192515,"corporation":false,"usgs":false,"family":"Peery","given":"M. Zach","affiliations":[],"preferred":false,"id":696701,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70188116,"text":"70188116 - 2017 - Scenario Evaluator for Electrical Resistivity survey pre-modeling tool","interactions":[],"lastModifiedDate":"2017-11-29T16:39:40","indexId":"70188116","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3825,"text":"Groundwater","active":true,"publicationSubtype":{"id":10}},"title":"Scenario Evaluator for Electrical Resistivity survey pre-modeling tool","docAbstract":"<p><span>Geophysical tools have much to offer users in environmental, water resource, and geotechnical fields; however, techniques such as electrical resistivity imaging (ERI) are often oversold and/or overinterpreted due to a lack of understanding of the limitations of the techniques, such as the appropriate depth intervals or resolution of the methods. The relationship between ERI data and resistivity is nonlinear; therefore, these limitations depend on site conditions and survey design and are best assessed through forward and inverse modeling exercises prior to field investigations. In this approach, proposed field surveys are first numerically simulated given the expected electrical properties of the site, and the resulting hypothetical data are then analyzed using inverse models. Performing ERI forward/inverse modeling, however, requires substantial expertise and can take many hours to implement. We present a new spreadsheet-based tool, the Scenario Evaluator for Electrical Resistivity (SEER), which features a graphical user interface that allows users to manipulate a resistivity model and instantly view how that model would likely be interpreted by an ERI survey. The SEER tool is intended for use by those who wish to determine the value of including ERI to achieve project goals, and is designed to have broad utility in industry, teaching, and research.</span></p>","language":"English","publisher":"Wiley","doi":"10.1111/gwat.12522","usgsCitation":"Terry, N., Day-Lewis, F.D., Robinson, J.L., Slater, L., Halford, K.J., Binley, A., Lane, J.W., and Werkema, D.D., 2017, Scenario Evaluator for Electrical Resistivity survey pre-modeling tool: Groundwater, v. 55, no. 6, p. 885-890, https://doi.org/10.1111/gwat.12522.","productDescription":"6 p.","startPage":"885","endPage":"890","ipdsId":"IP-085916","costCenters":[{"id":486,"text":"OGW Branch of Geophysics","active":true,"usgs":true}],"links":[{"id":469814,"rank":1,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6145077","text":"External Repository"},{"id":438325,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7028PQ1","text":"USGS data release","linkHelpText":"Scenario Evaluator for Electrical Resistivity (SEER) Survey Design Tool"},{"id":341955,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"55","issue":"6","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-23","publicationStatus":"PW","scienceBaseUri":"592fd631e4b0e9bd0ea89692","contributors":{"authors":[{"text":"Terry, Neil C. 0000-0002-3965-340X nterry@usgs.gov","orcid":"https://orcid.org/0000-0002-3965-340X","contributorId":192554,"corporation":false,"usgs":true,"family":"Terry","given":"Neil","email":"nterry@usgs.gov","middleInitial":"C.","affiliations":[{"id":493,"text":"Office of Ground Water","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true},{"id":486,"text":"OGW Branch of Geophysics","active":true,"usgs":true}],"preferred":true,"id":696814,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Day-Lewis, Frederick D. 0000-0003-3526-886X daylewis@usgs.gov","orcid":"https://orcid.org/0000-0003-3526-886X","contributorId":1672,"corporation":false,"usgs":true,"family":"Day-Lewis","given":"Frederick","email":"daylewis@usgs.gov","middleInitial":"D.","affiliations":[{"id":486,"text":"OGW Branch of Geophysics","active":true,"usgs":true},{"id":493,"text":"Office of Ground Water","active":true,"usgs":true},{"id":37277,"text":"WMA - Earth System Processes Division","active":true,"usgs":true}],"preferred":true,"id":696815,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Robinson, Judith L.","contributorId":152119,"corporation":false,"usgs":false,"family":"Robinson","given":"Judith","email":"","middleInitial":"L.","affiliations":[{"id":18871,"text":"Rutgers University-Newark, Dept. of Earth & Environmental Sciences","active":true,"usgs":false}],"preferred":false,"id":696816,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Slater, Lee D. 0000-0003-0292-746X","orcid":"https://orcid.org/0000-0003-0292-746X","contributorId":192555,"corporation":false,"usgs":false,"family":"Slater","given":"Lee D.","affiliations":[],"preferred":false,"id":696817,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Halford, Keith J. 0000-0002-7322-1846 khalford@usgs.gov","orcid":"https://orcid.org/0000-0002-7322-1846","contributorId":1374,"corporation":false,"usgs":true,"family":"Halford","given":"Keith","email":"khalford@usgs.gov","middleInitial":"J.","affiliations":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"preferred":true,"id":696818,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Binley, Andrew 0000-0002-0938-9070","orcid":"https://orcid.org/0000-0002-0938-9070","contributorId":192556,"corporation":false,"usgs":false,"family":"Binley","given":"Andrew","email":"","affiliations":[],"preferred":false,"id":696819,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Lane, John W. Jr. 0000-0002-3558-243X jwlane@usgs.gov","orcid":"https://orcid.org/0000-0002-3558-243X","contributorId":189168,"corporation":false,"usgs":true,"family":"Lane","given":"John","suffix":"Jr.","email":"jwlane@usgs.gov","middleInitial":"W.","affiliations":[{"id":486,"text":"OGW Branch of Geophysics","active":true,"usgs":true},{"id":493,"text":"Office of Ground Water","active":true,"usgs":true}],"preferred":false,"id":696820,"contributorType":{"id":1,"text":"Authors"},"rank":7},{"text":"Werkema, Dale D.","contributorId":40488,"corporation":false,"usgs":false,"family":"Werkema","given":"Dale","email":"","middleInitial":"D.","affiliations":[{"id":6914,"text":"U.S. Environmental Protection Agency","active":true,"usgs":false}],"preferred":false,"id":696821,"contributorType":{"id":1,"text":"Authors"},"rank":8}]}}
,{"id":70188120,"text":"70188120 - 2017 - Linking occupancy surveys with habitat characteristics to estimate abundance and distribution in an endangered cryptic bird","interactions":[],"lastModifiedDate":"2018-01-04T08:29:13","indexId":"70188120","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1006,"text":"Biodiversity and Conservation","active":true,"publicationSubtype":{"id":10}},"title":"Linking occupancy surveys with habitat characteristics to estimate abundance and distribution in an endangered cryptic bird","docAbstract":"<p><span>Accurate estimates of the distribution and abundance of endangered species are crucial to determine their status and plan recovery options, but such estimates are often difficult to obtain for species with low detection probabilities or that occur in inaccessible habitats. The Puaiohi (</span><i class=\"EmphasisTypeItalic \">Myadestes palmeri</i><span>) is a cryptic species endemic to Kauaʻi, Hawai‘i, and restricted to high elevation ravines that are largely inaccessible. To improve current population estimates, we developed an approach to model distribution and abundance of Puaiohi across their range by linking occupancy surveys to habitat characteristics, territory density, and landscape attributes. Occupancy per station ranged from 0.17 to 0.82, and was best predicted by the number and vertical extent of cliffs, cliff slope, stream width, and elevation. To link occupancy estimates with abundance, we used territory mapping data to estimate the average number of territories per survey station (0.44 and 0.66 territories per station in low and high occupancy streams, respectively), and the average number of individuals per territory (1.9). We then modeled Puaiohi occupancy as a function of two remote-sensed measures of habitat (stream sinuosity and elevation) to predict occupancy across its entire range. We combined predicted occupancy with estimates of birds per station to produce a global population estimate of 494 (95% CI 414–580) individuals. Our approach is a model for using multiple independent sources of information to accurately track population trends, and we discuss future directions for modeling abundance of this, and other, rare species.</span></p>","language":"English","publisher":"Springer","doi":"10.1007/s10531-017-1313-0","usgsCitation":"Crampton, L.H., Brinck, K.W., Pias, K.E., Heindl, B.A., Savre, T., Diegmann, J.S., and Paxton, E., 2017, Linking occupancy surveys with habitat characteristics to estimate abundance and distribution in an endangered cryptic bird: Biodiversity and Conservation, v. 26, no. 7, p. 1525-1539, https://doi.org/10.1007/s10531-017-1313-0.","productDescription":"15 p.","startPage":"1525","endPage":"1539","ipdsId":"IP-079988","costCenters":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true}],"links":[{"id":341967,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"26","issue":"7","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2017-02-17","publicationStatus":"PW","scienceBaseUri":"592fd630e4b0e9bd0ea8968a","contributors":{"authors":[{"text":"Crampton, Lisa H.","contributorId":192559,"corporation":false,"usgs":false,"family":"Crampton","given":"Lisa","email":"","middleInitial":"H.","affiliations":[],"preferred":false,"id":696837,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Brinck, Kevin W. 0000-0001-7581-2482 kbrinck@usgs.gov","orcid":"https://orcid.org/0000-0001-7581-2482","contributorId":150936,"corporation":false,"usgs":false,"family":"Brinck","given":"Kevin","email":"kbrinck@usgs.gov","middleInitial":"W.","affiliations":[{"id":13351,"text":"University of Hawaii Cooperative Studies Unit","active":true,"usgs":false}],"preferred":false,"id":696838,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Pias, Kyle E.","contributorId":192560,"corporation":false,"usgs":false,"family":"Pias","given":"Kyle","email":"","middleInitial":"E.","affiliations":[],"preferred":false,"id":696839,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Heindl, Barbara A. P.","contributorId":192561,"corporation":false,"usgs":false,"family":"Heindl","given":"Barbara","email":"","middleInitial":"A. P.","affiliations":[],"preferred":false,"id":696840,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Savre, Thomas","contributorId":192562,"corporation":false,"usgs":false,"family":"Savre","given":"Thomas","email":"","affiliations":[],"preferred":false,"id":696841,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Diegmann, Julia S.","contributorId":192563,"corporation":false,"usgs":false,"family":"Diegmann","given":"Julia","email":"","middleInitial":"S.","affiliations":[],"preferred":false,"id":696842,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Paxton, Eben H. 0000-0001-5578-7689 epaxton@usgs.gov","orcid":"https://orcid.org/0000-0001-5578-7689","contributorId":438,"corporation":false,"usgs":true,"family":"Paxton","given":"Eben H.","email":"epaxton@usgs.gov","affiliations":[{"id":521,"text":"Pacific Island Ecosystems Research Center","active":false,"usgs":true},{"id":5049,"text":"Pacific Islands Ecosys Research Center","active":true,"usgs":true}],"preferred":false,"id":696836,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70188092,"text":"70188092 - 2017 - Human infectious disease burdens decrease with urbanization but not with biodiversity","interactions":[],"lastModifiedDate":"2017-07-25T15:16:11","indexId":"70188092","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3048,"text":"Philosophical Transactions of the Royal Society B: Biological Sciences","active":true,"publicationSubtype":{"id":10}},"title":"Human infectious disease burdens decrease with urbanization but not with biodiversity","docAbstract":"<p><span>nfectious disease burdens vary from country to country and year to year due to ecological and economic drivers. Recently, Murray </span><i>et al.</i><span> (Murray CJ </span><i>et al</i><span>. 2012 </span><i>Lancet</i> <strong>380</strong><span>, 2197–2223. (</span><a href=\"http://dx.doi.org/10.1016/S0140-6736(12)61689-4\" data-mce-href=\"http://dx.doi.org/10.1016/S0140-6736(12)61689-4\">doi:10.1016/S0140-6736(12)61689-4</a><span>)) estimated country-level morbidity and mortality associated with a variety of factors, including infectious diseases, for the years 1990 and 2010. Unlike other databases that report disease prevalence or count outbreaks per country, Murray </span><i>et al.</i><span> report health impacts in per-person disability-adjusted life years (DALYs), allowing comparison across diseases with lethal and sublethal health effects. We investigated the spatial and temporal relationships between DALYs lost to infectious disease and potential demographic, economic, environmental and biotic drivers, for the 60 intermediate-sized countries where data were available and comparable. Most drivers had unique associations with each disease. For example, temperature was positively associated with some diseases and negatively associated with others, perhaps due to differences in disease agent thermal optima, transmission modes and host species identities. Biodiverse countries tended to have high disease burdens, consistent with the expectation that high diversity of potential hosts should support high disease transmission. Contrary to the dilution effect hypothesis, increases in biodiversity over time were not correlated with improvements in human health, and increases in forestation over time were actually associated with increased disease burden. Urbanization and wealth were associated with lower burdens for many diseases, a pattern that could arise from increased access to sanitation and healthcare in cities and increased investment in healthcare. The importance of urbanization and wealth helps to explain why most infectious diseases have become less burdensome over the past three decades, and points to possible levers for further progress in improving global public health.</span></p>","language":"English","publisher":"The Royal Society Publishing","doi":"10.1098/rstb.2016.0122","usgsCitation":"Wood, C., McInturff, A., Young, H.S., Kim, D., and Lafferty, K.D., 2017, Human infectious disease burdens decrease with urbanization but not with biodiversity: Philosophical Transactions of the Royal Society B: Biological Sciences, v. 372, no. 1722, 14 p.; Article 20160122, https://doi.org/10.1098/rstb.2016.0122.","productDescription":"14 p.; Article 20160122","ipdsId":"IP-077842","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":469813,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1098/rstb.2016.0122","text":"Publisher Index Page"},{"id":341924,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"372","issue":"1722","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationDate":"2017-04-24","publicationStatus":"PW","scienceBaseUri":"592fd637e4b0e9bd0ea896c2","contributors":{"authors":[{"text":"Wood, Chelsea L.","contributorId":36866,"corporation":false,"usgs":true,"family":"Wood","given":"Chelsea L.","affiliations":[],"preferred":false,"id":696650,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"McInturff, Alex","contributorId":192502,"corporation":false,"usgs":false,"family":"McInturff","given":"Alex","email":"","affiliations":[],"preferred":false,"id":696651,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Young, Hillary S.","contributorId":53711,"corporation":false,"usgs":false,"family":"Young","given":"Hillary","email":"","middleInitial":"S.","affiliations":[{"id":13007,"text":"Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara","active":true,"usgs":false}],"preferred":false,"id":696652,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kim, DoHyung","contributorId":192503,"corporation":false,"usgs":false,"family":"Kim","given":"DoHyung","email":"","affiliations":[],"preferred":false,"id":696653,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Lafferty, Kevin D. 0000-0001-7583-4593 klafferty@usgs.gov","orcid":"https://orcid.org/0000-0001-7583-4593","contributorId":1415,"corporation":false,"usgs":true,"family":"Lafferty","given":"Kevin","email":"klafferty@usgs.gov","middleInitial":"D.","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":696649,"contributorType":{"id":1,"text":"Authors"},"rank":5}]}}
,{"id":70188108,"text":"70188108 - 2017 - Seasonal and diel environmental conditions predict western pond turtle (Emys marmorata) behavior at a perennial and an ephemeral stream in Sequoia National Park, California","interactions":[],"lastModifiedDate":"2017-06-14T11:58:12","indexId":"70188108","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1210,"text":"Chelonian Conservation and Biology","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Seasonal and diel environmental conditions predict western pond turtle (<i>Emys marmorata</i>) behavior at a perennial and an ephemeral stream in Sequoia National Park, California","title":"Seasonal and diel environmental conditions predict western pond turtle (Emys marmorata) behavior at a perennial and an ephemeral stream in Sequoia National Park, California","docAbstract":"<p><span>Managers making decisions may benefit from a well-informed understanding of a species' population size and trends. Given the cryptic nature and habitat characteristics of the western pond turtle (</span><i><i>Emys marmorata</i></i><span>), however, imperfect detection may be high and population estimates are frequently varied and unreliable. As a case study to investigate this issue, we used temperature dataloggers to examine turtle behavior at 2 long-term monitoring sites with different hydrological characteristics in Sequoia National Park, California, to determine if common stream-survey techniques are consistent with site-specific turtle behavior. Sycamore Creek is an intermittent stream that dries up every summer while the North Fork Kaweah River flows year-round. We found that while turtles spent most of the recorded time in the water (55% in Sycamore Creek and 82% in the North Fork Kaweah River), the timing of traditional surveys only coincided with the turtles' aquatic activity in the North Fork Kaweah River. At Sycamore Creek, turtles were most likely to be in the water at night. In contrast, failure to detect turtles in North Fork Kaweah River is likely owing to the larger size and complexity of the underwater habitat. In both streams, turtles were also more likely to be in the water in the weeks leading up to important changes in hydroperiods. Our findings illustrate the effects that differences in water permanence can have on turtle behavior within the same watershed and how phenotypic plasticity may then affect detection during surveys. Our study highlights the importance of tailoring survey practices to the site-specific behavioral traits of the target species.</span></p>","language":"English","publisher":"Chelonian Research Foundation","doi":"10.2744/CCB-1240.1","usgsCitation":"Ruso, G., Meyer, E., and Das, A., 2017, Seasonal and diel environmental conditions predict western pond turtle (Emys marmorata) behavior at a perennial and an ephemeral stream in Sequoia National Park, California: Chelonian Conservation and Biology, v. 16, no. 1, p. 20-28, https://doi.org/10.2744/CCB-1240.1.","productDescription":"9 p.","startPage":"20","endPage":"28","ipdsId":"IP-082015","costCenters":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"links":[{"id":495027,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.2744/ccb-1240.1","text":"Publisher Index Page"},{"id":341947,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"California","otherGeospatial":"Sequoia National Park","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -118.69010925292969,\n              36.41078375301565\n            ],\n            [\n              -118.4271240234375,\n              36.41078375301565\n            ],\n            [\n              -118.4271240234375,\n              36.563151553545985\n            ],\n            [\n              -118.69010925292969,\n              36.563151553545985\n            ],\n            [\n              -118.69010925292969,\n              36.41078375301565\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"16","issue":"1","publishingServiceCenter":{"id":1,"text":"Sacramento PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592fd633e4b0e9bd0ea896a1","contributors":{"authors":[{"text":"Ruso, Gabrielle gruso@usgs.gov","contributorId":192549,"corporation":false,"usgs":true,"family":"Ruso","given":"Gabrielle","email":"gruso@usgs.gov","affiliations":[],"preferred":true,"id":696773,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Meyer, Erik","contributorId":192550,"corporation":false,"usgs":false,"family":"Meyer","given":"Erik","email":"","affiliations":[],"preferred":false,"id":696774,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Das, Adrian J. 0000-0002-3937-2616 adas@usgs.gov","orcid":"https://orcid.org/0000-0002-3937-2616","contributorId":3842,"corporation":false,"usgs":true,"family":"Das","given":"Adrian J.","email":"adas@usgs.gov","affiliations":[{"id":651,"text":"Western Ecological Research Center","active":true,"usgs":true}],"preferred":true,"id":696772,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70188114,"text":"70188114 - 2017 - Predation of freshwater fish in environments with elevated carbon dioxide","interactions":[],"lastModifiedDate":"2017-09-05T12:44:50","indexId":"70188114","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2681,"text":"Marine and Freshwater Research","active":true,"publicationSubtype":{"id":10}},"title":"Predation of freshwater fish in environments with elevated carbon dioxide","docAbstract":"<p><span>Carbon dioxide (CO</span><sub>2</sub><span>) in fresh-water environments is poorly understood, yet in marine environments CO</span><sub>2</sub><span> can affect fish behaviour, including predator–prey relationships. To examine changes in predator success in elevated CO</span><sub>2</sub><span>, we experimented with predatory </span><i>Micropterus salmoides</i><span> and </span><i>Pimephales promelas</i><span> prey. We used a two-factor fully crossed experimental design; one factor was 4-day (acclimation) CO</span><sub>2</sub><span> concentration and the second factor CO</span><sub>2</sub><span> concentration during 20-min predation experiments. Both factors had three treatment levels, including ambient partial pressure of CO</span><sub>2</sub><span>(</span><i>p</i><span>CO</span><sub>2</sub><span>; 0–1000 μatm), low </span><i>p</i><span>CO</span><sub>2</sub><span> (4000–5000 μatm) and high </span><i>p</i><span>CO</span><sub>2</sub><span> (8000–10&nbsp;000 μatm). </span><i>Micropterus salmoides</i><span> was exposed to both factors, whereas </span><i>P. promelas</i><span> was not exposed to the acclimation factor. In total, 83 of the 96&nbsp;</span><i>P. promelas</i><span> were consumed (</span><i>n</i><span>&nbsp;=&nbsp;96 trials) and we saw no discernible effect of CO</span><sub>2</sub><span> on predator success or time to predation. Failed strikes and time between failed strikes were too infrequent to model. Compared with marine systems, our findings are unique in that we not only saw no changes in prey capture success with increasing CO</span><sub>2</sub><span>, but we also used CO</span><sub>2</sub><span> treatments that were substantially higher than those in past experiments. Our work demonstrated a pronounced resiliency of freshwater predators to elevated CO</span><sub>2</sub><span> exposure, and a starting point for future work in this area.</span></p>","language":"English","publisher":"CSIRO Publishing","doi":"10.1071/MF16156","usgsCitation":"Midway, S.R., Hasler, C.T., Wagner, T., and Suski, C., 2017, Predation of freshwater fish in environments with elevated carbon dioxide: Marine and Freshwater Research, v. 68, p. 1585-1592, https://doi.org/10.1071/MF16156.","productDescription":"8 p.","startPage":"1585","endPage":"1592","ipdsId":"IP-074164","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":341953,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"68","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592fd632e4b0e9bd0ea89698","contributors":{"authors":[{"text":"Midway, Stephen R.","contributorId":172159,"corporation":false,"usgs":false,"family":"Midway","given":"Stephen","email":"","middleInitial":"R.","affiliations":[],"preferred":false,"id":696806,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hasler, Caleb T.","contributorId":190150,"corporation":false,"usgs":false,"family":"Hasler","given":"Caleb","email":"","middleInitial":"T.","affiliations":[],"preferred":false,"id":696807,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Wagner, Tyler 0000-0003-1726-016X twagner@usgs.gov","orcid":"https://orcid.org/0000-0003-1726-016X","contributorId":1050,"corporation":false,"usgs":true,"family":"Wagner","given":"Tyler","email":"twagner@usgs.gov","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":696803,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Suski, C. D.","contributorId":190151,"corporation":false,"usgs":false,"family":"Suski","given":"C.","middleInitial":"D.","affiliations":[],"preferred":false,"id":696808,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70188111,"text":"70188111 - 2017 - Addressing wild turkey population declines using structured decision making","interactions":[],"lastModifiedDate":"2017-05-31T13:54:00","indexId":"70188111","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2508,"text":"Journal of Wildlife Management","active":true,"publicationSubtype":{"id":10}},"title":"Addressing wild turkey population declines using structured decision making","docAbstract":"<p><span>We present a case study from New York, USA, of the use of structured decision making (SDM) to identify fall turkey harvest regulations that best meet stakeholder objectives, in light of recent apparent declines in abundance of wild turkeys in the northeastern United States. We used the SDM framework to incorporate the multiple objectives associated with turkey hunting, stakeholder desires, and region-specific ecological and environmental factors that could influence fall harvest. We identified a set of 4 fall harvest regulations, composed of different season lengths and bag limits, and evaluated their relative achievement of the objectives. We used a stochastic turkey population model, statistical modeling, and expert elicitation to evaluate the consequences of each harvest regulation on each of the objectives. We conducted a statewide mail survey of fall turkey hunters in New York to gather the necessary information to evaluate tradeoffs among multiple objectives associated with hunter satisfaction. The optimal fall harvest regulation was a 2-week season and allowed for the harvest of 1 bird/hunter. This regulation was the most conservative of those evaluated, reflecting the concerns about recent declines in turkey abundance among agency wildlife biologists and the hunting public. Depending on the region of the state, the 2-week, 1-bird regulation was predicted to result in 7–32% more turkeys on the landscape after 5 years. The SDM process provided a transparent framework for setting fall turkey harvest regulations and reduced potential stakeholder conflict by explicitly taking the multiple objectives of different stakeholder groups into account.</span></p>","language":"English","publisher":"Wiley","doi":"10.1002/jwmg.21220","usgsCitation":"Robinson, K., Fuller, A.K., Schiavone, M.V., Swift, B.L., Diefenbach, D.R., Siemer, W.F., and Decker, D.J., 2017, Addressing wild turkey population declines using structured decision making: Journal of Wildlife Management, v. 81, no. 3, p. 393-405, https://doi.org/10.1002/jwmg.21220.","productDescription":"13 p.","startPage":"393","endPage":"405","ipdsId":"IP-074157","costCenters":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"links":[{"id":341946,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"New 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York\",\"nation\":\"USA  \"}}]}","volume":"81","issue":"3","publishingServiceCenter":{"id":9,"text":"Reston PSC"},"noUsgsAuthors":false,"publicationDate":"2017-02-02","publicationStatus":"PW","scienceBaseUri":"592fd632e4b0e9bd0ea8969d","contributors":{"authors":[{"text":"Robinson, Kelly F.","contributorId":44911,"corporation":false,"usgs":false,"family":"Robinson","given":"Kelly F.","affiliations":[{"id":6596,"text":"Quantitative Fisheries Center, Department of Fisheries and Wildlife Michigan State University","active":true,"usgs":false}],"preferred":false,"id":696789,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Fuller, Angela K. 0000-0002-9247-7468 afuller@usgs.gov","orcid":"https://orcid.org/0000-0002-9247-7468","contributorId":3984,"corporation":false,"usgs":true,"family":"Fuller","given":"Angela","email":"afuller@usgs.gov","middleInitial":"K.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":696780,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Schiavone, Michael V.","contributorId":30064,"corporation":false,"usgs":false,"family":"Schiavone","given":"Michael","email":"","middleInitial":"V.","affiliations":[],"preferred":false,"id":696790,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Swift, Bryan L.","contributorId":11433,"corporation":false,"usgs":false,"family":"Swift","given":"Bryan","email":"","middleInitial":"L.","affiliations":[{"id":13678,"text":"New York State Department of Environmental Conservation","active":true,"usgs":false}],"preferred":false,"id":696791,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Diefenbach, Duane R. 0000-0001-5111-1147 drd11@usgs.gov","orcid":"https://orcid.org/0000-0001-5111-1147","contributorId":5235,"corporation":false,"usgs":true,"family":"Diefenbach","given":"Duane","email":"drd11@usgs.gov","middleInitial":"R.","affiliations":[{"id":199,"text":"Coop Res Unit Leetown","active":true,"usgs":true}],"preferred":true,"id":696792,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Siemer, William F.","contributorId":192551,"corporation":false,"usgs":false,"family":"Siemer","given":"William","email":"","middleInitial":"F.","affiliations":[{"id":12722,"text":"Cornell University","active":true,"usgs":false}],"preferred":false,"id":696793,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Decker, Daniel J.","contributorId":114044,"corporation":false,"usgs":true,"family":"Decker","given":"Daniel","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":696794,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70188099,"text":"70188099 - 2017 - Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata)","interactions":[],"lastModifiedDate":"2023-06-23T14:54:17.841602","indexId":"70188099","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3908,"text":"Royal Society Open Science","active":true,"publicationSubtype":{"id":10}},"displayTitle":"Transcriptional response to West Nile virus infection in the zebra finch (<i>Taeniopygia guttata</i>)","title":"Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata)","docAbstract":"<p><span>West Nile virus (WNV) is a widespread arbovirus that imposes a significant cost to both human and wildlife health. WNV exists in a bird-mosquito transmission cycle in which passerine birds act as the primary reservoir host. As a public health concern, the mammalian immune response to WNV has been studied in detail. Little, however, is known about the avian immune response to WNV. Avian taxa show variable susceptibility to WNV and what drives this variation is unknown. Thus, to study the immune response to WNV in birds, we experimentally infected captive zebra finches (</span><i>Taeniopygia guttata</i><span>). Zebra finches provide a useful model, as like many natural avian hosts they are moderately susceptible to WNV and thus provide sufficient viremia to infect mosquitoes. We performed RNAseq in spleen tissue during peak viremia to provide an overview of the transcriptional response. In general, we find strong parallels with the mammalian immune response to WNV, including upregulation of five genes in the Rig-I-like receptor signalling pathway, and offer insights into avian-specific responses. Together with complementary immunological assays, we provide a model of the avian immune response to WNV and set the stage for future comparative studies among variably susceptible populations and species.</span></p>","language":"English","publisher":"The Royal Society","doi":"10.1098/rsos.170296","usgsCitation":"Newhouse, D.J., Hofmeister, E.K., and Balakrishnan, C.N., 2017, Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata): Royal Society Open Science, v. 4, p. 1-12, https://doi.org/10.1098/rsos.170296.","productDescription":"170296; 12 p.","startPage":"1","endPage":"12","ipdsId":"IP-080689","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":469812,"rank":3,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1098/rsos.170296","text":"Publisher Index Page"},{"id":341923,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"},{"id":344200,"rank":2,"type":{"id":30,"text":"Data Release"},"url":"https://dx.doi.org/10.5066/F7G44NHF","text":"USGS data release","description":"USGS data release","linkHelpText":"Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function"}],"volume":"4","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationDate":"2017-06-28","publicationStatus":"PW","scienceBaseUri":"592fd636e4b0e9bd0ea896b8","contributors":{"authors":[{"text":"Newhouse, Daniel J.","contributorId":192508,"corporation":false,"usgs":false,"family":"Newhouse","given":"Daniel","email":"","middleInitial":"J.","affiliations":[],"preferred":false,"id":696687,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Hofmeister, Erik K. 0000-0002-6360-3912 ehofmeister@usgs.gov","orcid":"https://orcid.org/0000-0002-6360-3912","contributorId":3230,"corporation":false,"usgs":true,"family":"Hofmeister","given":"Erik","email":"ehofmeister@usgs.gov","middleInitial":"K.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696686,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Balakrishnan, Christopher N.","contributorId":177924,"corporation":false,"usgs":false,"family":"Balakrishnan","given":"Christopher","email":"","middleInitial":"N.","affiliations":[],"preferred":false,"id":696688,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70188086,"text":"70188086 - 2017 - Lambdapapillomavirus 2 in a gray wolf (Canis lupus) from Minnesota with oral papillomatosis and sarcoptic mange","interactions":[],"lastModifiedDate":"2017-10-08T11:43:39","indexId":"70188086","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2507,"text":"Journal of Wildlife Diseases","active":true,"publicationSubtype":{"id":10}},"displayTitle":"<i>Lambdapapillomavirus 2</i> in a gray wolf (<i>Canis lupus</i>) from Minnesota with oral papillomatosis and sarcoptic mange","title":"Lambdapapillomavirus 2 in a gray wolf (Canis lupus) from Minnesota with oral papillomatosis and sarcoptic mange","docAbstract":"<p><span>Oral papillomatosis was diagnosed in a gray wolf (</span><i><i>Canis lupus</i></i><span>) with sarcoptic mange from Minnesota, USA found dead in February 2015. Intranuclear inclusion bodies were evident histologically, and papillomaviral antigens were confirmed using immunohistochemistry. Sequencing of the L1 papillomavirus gene showed closest similarity to </span><i>Lambdapapillomavirus 2</i><span>.</span></p>","language":"English","publisher":"Wildlife Disease Association","doi":"10.7589/2016-11-247","usgsCitation":"Knowles, S., Windels, S.K., Adams, M., and Hall, J.S., 2017, Lambdapapillomavirus 2 in a gray wolf (Canis lupus) from Minnesota with oral papillomatosis and sarcoptic mange: Journal of Wildlife Diseases, v. 53, no. 4, p. 925-929, https://doi.org/10.7589/2016-11-247.","productDescription":"5 p.","startPage":"925","endPage":"929","ipdsId":"IP-081050","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":341927,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"53","issue":"4","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592fd639e4b0e9bd0ea896cb","contributors":{"authors":[{"text":"Knowles, Susan 0000-0002-0254-6491 sknowles@usgs.gov","orcid":"https://orcid.org/0000-0002-0254-6491","contributorId":5254,"corporation":false,"usgs":true,"family":"Knowles","given":"Susan","email":"sknowles@usgs.gov","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696620,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Windels, Steve K.","contributorId":182422,"corporation":false,"usgs":false,"family":"Windels","given":"Steve","email":"","middleInitial":"K.","affiliations":[{"id":18939,"text":"Voyageurs National Park","active":true,"usgs":false}],"preferred":false,"id":696621,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Adams, Marie","contributorId":192488,"corporation":false,"usgs":false,"family":"Adams","given":"Marie","email":"","affiliations":[],"preferred":false,"id":696622,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Hall, Jeffrey S. 0000-0001-5599-2826 jshall@usgs.gov","orcid":"https://orcid.org/0000-0001-5599-2826","contributorId":2254,"corporation":false,"usgs":true,"family":"Hall","given":"Jeffrey","email":"jshall@usgs.gov","middleInitial":"S.","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696623,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70188028,"text":"70188028 - 2017 - Spectral matching techniques (SMTs) and automated cropland classification algorithms (ACCAs) for mapping croplands of Australia using MODIS 250-m time-series (2000–2015) data","interactions":[],"lastModifiedDate":"2017-08-03T08:35:21","indexId":"70188028","displayToPublicDate":"2017-05-31T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2035,"text":"International Journal of Digital Earth","active":true,"publicationSubtype":{"id":10}},"title":"Spectral matching techniques (SMTs) and automated cropland classification algorithms (ACCAs) for mapping croplands of Australia using MODIS 250-m time-series (2000–2015) data","docAbstract":"<p><span>Mapping croplands, including fallow areas, are an important measure to determine the quantity of food that is produced, where they are produced, and when they are produced (e.g. seasonality). Furthermore, croplands are known as water guzzlers by consuming anywhere between 70% and 90% of all human water use globally. Given these facts and the increase in global population to nearly 10 billion by the year 2050, the need for routine, rapid, and automated cropland mapping year-after-year and/or season-after-season is of great importance. The overarching goal of this study was to generate standard and routine cropland products, year-after-year, over very large areas through the use of two novel methods: (a) quantitative spectral matching techniques (QSMTs) applied at continental level and (b) rule-based Automated Cropland Classification Algorithm (ACCA) with the ability to hind-cast, now-cast, and future-cast. Australia was chosen for the study given its extensive croplands, rich history of agriculture, and yet nonexistent routine yearly generated cropland products using multi-temporal remote sensing. This research produced three distinct cropland products using Moderate Resolution Imaging Spectroradiometer (MODIS) 250-m normalized difference vegetation index 16-day composite time-series data for 16 years: 2000 through 2015. The products consisted of: (1) cropland extent/areas versus cropland fallow areas, (2) irrigated versus rainfed croplands, and (3) cropping intensities: single, double, and continuous cropping. An accurate reference cropland product (RCP) for the year 2014 (RCP2014) produced using QSMT was used as a knowledge base to train and develop the ACCA algorithm that was then applied to the MODIS time-series data for the years 2000–2015. A comparison between the ACCA-derived cropland products (ACPs) for the year 2014 (ACP2014) versus RCP2014 provided an overall agreement of 89.4% (kappa = 0.814) with six classes: (a) producer’s accuracies varying between 72% and 90% and (b) user’s accuracies varying between 79% and 90%. ACPs for the individual years 2000–2013 and 2015 (ACP2000–ACP2013, ACP2015) showed very strong similarities with several other studies. The extent and vigor of the Australian croplands versus cropland fallows were accurately captured by the ACCA algorithm for the years 2000–2015, thus highlighting the value of the study in food security analysis. The ACCA algorithm and the cropland products are released through </span><a href=\"http://croplands.org/app/map\" target=\"_blank\" data-mce-href=\"http://croplands.org/app/map\">http://croplands.org/app/map</a><span> and </span><a href=\"http://geography.wr.usgs.gov/science/croplands/algorithms/australia_250m.html\" target=\"_blank\" data-mce-href=\"http://geography.wr.usgs.gov/science/croplands/algorithms/australia_250m.html\">http://geography.wr.usgs.gov/science/croplands/algorithms/australia_250m.html</a></p>","language":"English","publisher":"Taylor & Francis","doi":"10.1080/17538947.2016.1267269","usgsCitation":"Teluguntla, P.G., Thenkabail, P.S., Xiong, J., Gumma, M.K., Congalton, R.G., Oliphant, A., Poehnelt, J., Yadav, K., Rao, M.N., and Massey, R., 2017, Spectral matching techniques (SMTs) and automated cropland classification algorithms (ACCAs) for mapping croplands of Australia using MODIS 250-m time-series (2000–2015) data: International Journal of Digital Earth, v. 10, no. 9, p. 944-977, https://doi.org/10.1080/17538947.2016.1267269.","productDescription":"34 p.","startPage":"944","endPage":"977","ipdsId":"IP-074181","costCenters":[{"id":657,"text":"Western Geographic Science Center","active":true,"usgs":true}],"links":[{"id":469818,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1080/17538947.2016.1267269","text":"Publisher Index 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,{"id":70187096,"text":"fs20173029 - 2017 - Assessment of undiscovered oil and gas resources in the Spraberry Formation of the Midland Basin, Permian Basin Province, Texas, 2017","interactions":[],"lastModifiedDate":"2024-04-11T18:33:27.142061","indexId":"fs20173029","displayToPublicDate":"2017-05-30T18:45:00","publicationYear":"2017","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":313,"text":"Fact Sheet","code":"FS","onlineIssn":"2327-6932","printIssn":"2327-6916","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2017-3029","title":"Assessment of undiscovered oil and gas resources in the Spraberry Formation of the Midland Basin, Permian Basin Province, Texas, 2017","docAbstract":"<p>Using a geology-based assessment methodology, the U.S. Geological Survey estimated mean resources of 4.2 billion barrels of oil and 3.1 trillion cubic feet of gas in the Spraberry Formation of the Midland Basin, Permian Basin Province, Texas.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/fs20173029","usgsCitation":"Marra, K.R., Gaswirth, S.B., Schenk, C.J., Leathers-Miller, H.M., Klett, T.R., Mercier, T.J., Le, P.A., Tennyson, M.E., Finn, T.M., Hawkins, S.J., and Brownfield, M.E., 2017, Assessment of undiscovered oil and gas resources in the Spraberry Formation of the Midland Basin, Permian Basin Province, Texas, 2017: U.S. Geological Survey Fact Sheet 2017–3029, 2 p., https://doi.org/10.3133/fs20173029.","productDescription":"2 p.","onlineOnly":"N","ipdsId":"IP-084295","costCenters":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"links":[{"id":438327,"rank":6,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7CR5SKN","text":"USGS data release","linkHelpText":"USGS National and Global Oil and Gas Assessment Project-Permian Basin Province, Midland Basin, 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shawkins@usgs.gov","orcid":"https://orcid.org/0000-0002-1878-9121","contributorId":4818,"corporation":false,"usgs":true,"family":"Hawkins","given":"Sarah","email":"shawkins@usgs.gov","middleInitial":"J.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":692361,"contributorType":{"id":1,"text":"Authors"},"rank":10},{"text":"Brownfield, Michael E. 0000-0003-3633-1138 mbrownfield@usgs.gov","orcid":"https://orcid.org/0000-0003-3633-1138","contributorId":1548,"corporation":false,"usgs":true,"family":"Brownfield","given":"Michael","email":"mbrownfield@usgs.gov","middleInitial":"E.","affiliations":[{"id":164,"text":"Central Energy Resources Science Center","active":true,"usgs":true}],"preferred":true,"id":692362,"contributorType":{"id":1,"text":"Authors"},"rank":11}]}}
,{"id":70187585,"text":"sir20175042 - 2017 - Measuring surface-water loss in Honouliuli Stream near the ‘Ewa Shaft, O‘ahu, Hawai‘i","interactions":[],"lastModifiedDate":"2017-06-22T16:30:24","indexId":"sir20175042","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2017-5042","title":"Measuring surface-water loss in Honouliuli Stream near the ‘Ewa Shaft, O‘ahu, Hawai‘i","docAbstract":"<p>The Honolulu Board of Water Supply is currently concerned with the possibility of bacteria in the pumped water of the ‘Ewa Shaft (State well 3-2202-21). Groundwater from the ‘Ewa Shaft could potentially be used to meet future potable water needs in the ‘Ewa area on the island of O‘ahu. The source of the bacteria in the pumped water is unknown, although previous studies indicate that surface water may be lost to the subsurface near the site. The ‘Ewa Shaft consists of a vertical shaft, started near the south bank of Honouliuli Stream at an altitude of about 161 feet, and two horizontal infiltration tunnels near sea level. The shaft extracts groundwater from near the top of the freshwater lens in the Waipahu-Waiawa aquifer system within the greater Pearl Harbor Aquifer Sector, a designated Water Management Area.<br></p><p>The surface-water losses were evaluated with continuous groundwater-level data from the ‘Ewa Shaft and a nearby monitoring well, continuous stream-discharge data from U.S. Geological Survey streamflow-gaging station 16212490 (Honouliuli Stream at H-1 Freeway near Waipahu), and seepage-run measurements in Honouliuli Stream and its tributary. During storms, discharge at the Honouliuli Stream gaging station increases and groundwater levels at ‘Ewa Shaft and a nearby monitoring well also increase. The concurrent increase in water levels at ‘Ewa Shaft and the nearby monitoring well during storms indicates that regional groundwater-level changes related to increased recharge, reduced withdrawals (due to a decrease in demand during periods of rainfall), or both may be occurring; although these data do not preclude the possibility of local recharge from Honouliuli Stream. Discharge measurements from two seepage runs indicate that surface water in the immediate area adjacent to ‘Ewa Shaft infiltrates into the streambed and may later reach the groundwater system developed by the ‘Ewa Shaft. The estimated seepage loss rates in the vicinity of ‘Ewa Shaft from the two seepage runs generally ranged from 0.27 to 1.78 million gallons per day per mile of stream reach; although higher seepage rates may occur during periods of higher discharge in Honouliuli Stream. A potential source of bacteria in ‘Ewa Shaft maybe related to seepage from Honouliuli Stream; however, other sources of bacteria were not studied and cannot be excluded.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20175042","collaboration":"Prepared in cooperation with the Honolulu Board of Water Supply","usgsCitation":"Rosa, S.N., 2017, Measuring surface-water loss in Honouliuli Stream near the ‘Ewa Shaft, O‘ahu, Hawai‘i: U.S. Geological Survey Scientific Investigations Report 2017–5042, 14 p., https://doi.org/10.3133/sir20175042.","productDescription":"vi, 16 p.","onlineOnly":"Y","ipdsId":"IP-082480","costCenters":[{"id":525,"text":"Pacific Islands Water Science Center","active":true,"usgs":true}],"links":[{"id":341865,"rank":1,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/sir/2017/5042/coverthb.jpg"},{"id":341867,"rank":2,"type":{"id":11,"text":"Document"},"url":"https://pubs.usgs.gov/sir/2017/5042/sir20175042.pdf","text":"Report","size":"2.25 MB","linkFileType":{"id":1,"text":"pdf"},"description":"SIR 2017-5042"}],"country":"United States","state":"Hawaii","otherGeospatial":"O‘ahu, Wai‘anae Range","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -158.0667,\n            21.3625\n            ],\n            [\n              -158.0083,\n              21.3625\n            ],\n            [\n              -158.0083,\n              21.4833\n            ],\n            [\n              -158.0667,\n              21.4833\n            ],\n            [\n              -158.0667,\n              21.3625\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto:dc_hi@usgs.gov\" target=\"_blank\" data-mce-href=\"mailto:dc_hi@usgs.gov\">Director</a>,<br> <a href=\"http://hi.water.usgs.gov/\" data-mce-href=\"http://hi.water.usgs.gov/\">Pacific Islands Water Science Center</a><br> <a href=\"https://www.usgs.gov/\" data-mce-href=\"https://www.usgs.gov/\">U.S. Geological Survey</a><br> Inouye Regional Center<br> 1845 Wasp Blvd., B176<br>Honolulu, HI 96818</p>","tableOfContents":"<ul><li>Abstract<br></li><li>Introduction<br></li><li>Purpose and Scope<br></li><li>Setting<br></li><li>Climate<br></li><li>Hydrogeological Setting<br></li><li>Surface-Water Losses<br></li><li>Continuous Water-Level and Stream-Discharge Data<br></li><li>Seepage Run<br></li><li>Study Limitations and Additional Data Needs<br></li><li>Summary&nbsp;<br></li><li>References Cited<br></li></ul>","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"publishedDate":"2017-05-30","noUsgsAuthors":false,"publicationDate":"2017-05-30","publicationStatus":"PW","scienceBaseUri":"592e84b7e4b092b266f10d25","contributors":{"authors":[{"text":"Rosa, Sarah N. 0000-0002-3653-0826 snrosa@usgs.gov","orcid":"https://orcid.org/0000-0002-3653-0826","contributorId":2968,"corporation":false,"usgs":true,"family":"Rosa","given":"Sarah","email":"snrosa@usgs.gov","middleInitial":"N.","affiliations":[{"id":525,"text":"Pacific Islands Water Science Center","active":true,"usgs":true}],"preferred":true,"id":694646,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70188024,"text":"70188024 - 2017 - Steady state fractionation of heavy noble gas isotopes in a deep unsaturated zone","interactions":[],"lastModifiedDate":"2018-01-30T17:34:33","indexId":"70188024","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3722,"text":"Water Resources Research","onlineIssn":"1944-7973","printIssn":"0043-1397","active":true,"publicationSubtype":{"id":10}},"title":"Steady state fractionation of heavy noble gas isotopes in a deep unsaturated zone","docAbstract":"<p><span>To explore steady state fractionation processes in the unsaturated zone (UZ), we measured argon, krypton, and xenon isotope ratios throughout a ∼110 m deep UZ at the United States Geological Survey (USGS) Amargosa Desert Research Site (ADRS) in Nevada, USA. Prior work has suggested that gravitational settling should create a nearly linear increase in heavy-to-light isotope ratios toward the bottom of stagnant air columns in porous media. Our high-precision measurements revealed a binary mixture between (1) expected steady state isotopic compositions and (2) unfractionated atmospheric air. We hypothesize that the presence of an unsealed pipe connecting the surface to the water table allowed for direct inflow of surface air in response to extensive UZ gas sampling prior to our first (2015) measurements. Observed isotopic resettling in deep UZ samples collected a year later, after sealing the pipe, supports this interpretation. Data and modeling each suggest that the strong influence of gravitational settling and weaker influences of thermal diffusion and fluxes of CO</span><sub>2</sub><span> and water vapor accurately describe steady state isotopic fractionation of argon, krypton, and xenon within the UZ. The data confirm that heavy noble gas isotopes are sensitive indicators of UZ depth. Based on this finding, we outline a potential inverse approach to quantify past water table depths from noble gas isotope measurements in paleogroundwater, after accounting for fractionation during dissolution of UZ air and bubbles.</span></p>","language":"English","publisher":"American Geophysical Union","doi":"10.1002/2016WR019655","usgsCitation":"Seltzer, A.M., Severinghaus, J.P., Andraski, B.J., and Stonestrom, D.A., 2017, Steady state fractionation of heavy noble gas isotopes in a deep unsaturated zone: Water Resources Research, v. 53, no. 4, p. 2716-2732, https://doi.org/10.1002/2016WR019655.","productDescription":"17 p.","startPage":"2716","endPage":"2732","ipdsId":"IP-078005","costCenters":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true},{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true}],"links":[{"id":469820,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/2016wr019655","text":"Publisher Index Page"},{"id":341817,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Nevada","county":"Nye County","otherGeospatial":"Amargosa Desert Research Site","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -116.69602632522582,\n              36.76556695045376\n            ],\n            [\n              -116.68630599975586,\n              36.76556695045376\n            ],\n            [\n              -116.68630599975586,\n              36.76969233214548\n            ],\n            [\n              -116.69602632522582,\n              36.76969233214548\n            ],\n            [\n              -116.69602632522582,\n              36.76556695045376\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"53","issue":"4","publishingServiceCenter":{"id":14,"text":"Menlo Park PSC"},"noUsgsAuthors":false,"publicationDate":"2017-04-06","publicationStatus":"PW","scienceBaseUri":"592d8edce4b08f9d15be7b79","contributors":{"authors":[{"text":"Seltzer, Alan M.","contributorId":192321,"corporation":false,"usgs":false,"family":"Seltzer","given":"Alan","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":696221,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Severinghaus, Jeffrey P.","contributorId":140715,"corporation":false,"usgs":false,"family":"Severinghaus","given":"Jeffrey","email":"","middleInitial":"P.","affiliations":[],"preferred":false,"id":696222,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Andraski, Brian J. 0000-0002-2086-0417 andraski@usgs.gov","orcid":"https://orcid.org/0000-0002-2086-0417","contributorId":168800,"corporation":false,"usgs":true,"family":"Andraski","given":"Brian","email":"andraski@usgs.gov","middleInitial":"J.","affiliations":[{"id":465,"text":"Nevada Water Science Center","active":true,"usgs":true},{"id":38175,"text":"Toxics Substances Hydrology Program","active":true,"usgs":true},{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":false,"id":696223,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Stonestrom, David A. 0000-0001-7883-3385 dastones@usgs.gov","orcid":"https://orcid.org/0000-0001-7883-3385","contributorId":2280,"corporation":false,"usgs":true,"family":"Stonestrom","given":"David","email":"dastones@usgs.gov","middleInitial":"A.","affiliations":[{"id":438,"text":"National Research Program - Western Branch","active":true,"usgs":true}],"preferred":true,"id":696220,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70191910,"text":"70191910 - 2017 - A long-term copper exposure in a freshwater ecosystem using lotic mesocosms: Invertebrate community responses","interactions":[],"lastModifiedDate":"2017-10-18T17:13:50","indexId":"70191910","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1571,"text":"Environmental Toxicology and Chemistry","active":true,"publicationSubtype":{"id":10}},"title":"A long-term copper exposure in a freshwater ecosystem using lotic mesocosms: Invertebrate community responses","docAbstract":"<p><span>A lotic mesocosm study was carried out in 20-m-long channels, under continuous, environmentally realistic concentrations of copper (Cu) in low, medium, and high exposures (nominally 0, 5, 25, and 75 μg L</span><sup>−1</sup><span>; average effective concentrations &lt;0.5, 4, 20, and 57 μg L</span><sup>−1&nbsp;</sup><span>respectively) for 18 mo. Total abundance, taxa richness, and community structure of zooplankton, macroinvertebrates, and emerging insects were severely affected at Cu treatment levels of 25 and 75 μg L</span><sup>−1</sup><span>. Some taxa were sensitive to Cu, including gastropods such as<span>&nbsp;</span></span><i>Lymnaea</i><span><span>&nbsp;</span>spp. and<span>&nbsp;</span></span><i>Physa</i><span>sp., crustaceans such as<span>&nbsp;</span></span><i>Chydorus sphaericus, Gammarus pulex</i><span>, and<span>&nbsp;</span></span><i>Asellus aquaticus</i><span>, rotifers such as<span>&nbsp;</span></span><i>Mytilina</i><span><span>&nbsp;</span>sp. and<span>&nbsp;</span></span><i>Trichocerca</i><span><span>&nbsp;</span>sp., leeches such as<span>&nbsp;</span></span><i>Erpobdella</i><span><span>&nbsp;</span>sp., and the emergence of dipteran insects such as Chironomini. Other taxa appeared to be tolerant or favored by indirect effects, as in Chironimidae larvae, the emergence of Orthocladiinae, and the zooplankter<span>&nbsp;</span></span><i>Vorticella</i><span><span>&nbsp;</span>sp., which increased in the 25 and 75 μg L</span><sup>−1</sup><span><span>&nbsp;</span>treatments. After approximately 8 mo of Cu exposure, the macroinvertebrate community in the high treatment was decimated to the point that few organisms could be detected, with moderate effects in the medium treatment, and very slight effects in the low-Cu treatment. Subsequently, most taxa in the high-Cu exposure began a gradual and partial recovery. By the end of the study at 18 mo, macroinvertebrate taxa richness was similar to control richness, although overall abundances remained lower than controls. After 18 mo of copper exposure, a no-observed-effect concentration at the community level for consumers was set at 5 μg L</span><sup>−1</sup><span><span>&nbsp;</span>(4 μg L</span><sup>−1</sup><span><span>&nbsp;</span>as average effective concentration), and a lowest-observed-effect concentration at 25 μg L</span><sup>−1</sup><span>(20 μg L</span><sup>−1</sup><span><span>&nbsp;</span>as average effective concentration).<span>&nbsp;</span></span></p>","language":"English","publisher":"Society of Environmental Toxicology and Chemistry","doi":"10.1002/ETC.3822","usgsCitation":"Joachim, S., Roussel, H., Bonzom, J., Thybaud, E., Mebane, C.A., Brink, P.V., and Gauthier, L., 2017, A long-term copper exposure in a freshwater ecosystem using lotic mesocosms: Invertebrate community responses: Environmental Toxicology and Chemistry, v. 36, no. 10, p. 2698-2714, https://doi.org/10.1002/ETC.3822.","productDescription":"17 p.","startPage":"2698","endPage":"2714","ipdsId":"IP-078992","costCenters":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"links":[{"id":488065,"rank":0,"type":{"id":41,"text":"Open Access External Repository Page"},"url":"https://figshare.com/articles/dataset/A_long-term_copper_exposure_on_freshwater_ecosystem_using_lotic_mesocosms_-_Invertebrate_community_responses/4769635","text":"External Repository"},{"id":346929,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"36","issue":"10","publishingServiceCenter":{"id":12,"text":"Tacoma PSC"},"noUsgsAuthors":false,"publicationDate":"2017-10-01","publicationStatus":"PW","scienceBaseUri":"59e86836e4b05fe04cd4d1fc","contributors":{"authors":[{"text":"Joachim, Sandrine","contributorId":197505,"corporation":false,"usgs":false,"family":"Joachim","given":"Sandrine","email":"","affiliations":[],"preferred":false,"id":713643,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Roussel, Helene","contributorId":197506,"corporation":false,"usgs":false,"family":"Roussel","given":"Helene","email":"","affiliations":[],"preferred":false,"id":713644,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Bonzom, Jean-Marc","contributorId":197507,"corporation":false,"usgs":false,"family":"Bonzom","given":"Jean-Marc","email":"","affiliations":[],"preferred":false,"id":713645,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Thybaud, Eric","contributorId":197508,"corporation":false,"usgs":false,"family":"Thybaud","given":"Eric","email":"","affiliations":[],"preferred":false,"id":713646,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Mebane, Christopher A. 0000-0002-9089-0267 cmebane@usgs.gov","orcid":"https://orcid.org/0000-0002-9089-0267","contributorId":110,"corporation":false,"usgs":true,"family":"Mebane","given":"Christopher","email":"cmebane@usgs.gov","middleInitial":"A.","affiliations":[{"id":343,"text":"Idaho Water Science Center","active":true,"usgs":true}],"preferred":true,"id":713642,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Brink, Paul Van den","contributorId":197509,"corporation":false,"usgs":false,"family":"Brink","given":"Paul","email":"","middleInitial":"Van den","affiliations":[],"preferred":false,"id":713647,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Gauthier, Laury","contributorId":197510,"corporation":false,"usgs":false,"family":"Gauthier","given":"Laury","email":"","affiliations":[],"preferred":false,"id":713648,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
,{"id":70187550,"text":"sir20175044 - 2017 - Delineation of marsh types and marsh-type change in coastal Louisiana for 2007 and 2013","interactions":[],"lastModifiedDate":"2017-05-30T12:46:29","indexId":"sir20175044","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":18,"text":"Report"},"publicationSubtype":{"id":5,"text":"USGS Numbered Series"},"seriesTitle":{"id":334,"text":"Scientific Investigations Report","code":"SIR","onlineIssn":"2328-0328","printIssn":"2328-031X","active":true,"publicationSubtype":{"id":5}},"seriesNumber":"2017-5044","title":"Delineation of marsh types and marsh-type change in coastal Louisiana for 2007 and 2013","docAbstract":"<p>The Bureau of Ocean Energy Management researchers often require detailed information regarding emergent marsh vegetation types (such as fresh, intermediate, brackish, and saline) for modeling habitat capacities and mitigation. In response, the U.S. Geological Survey in cooperation with the Bureau of Ocean Energy Management produced a detailed change classification of emergent marsh vegetation types in coastal Louisiana from 2007 and 2013. This study incorporates two existing vegetation surveys and independent variables such as Landsat Thematic Mapper multispectral satellite imagery, high-resolution airborne imagery from 2007 and 2013, bare-earth digital elevation models based on airborne light detection and ranging, alternative contemporary land-cover classifications, and other spatially explicit variables. An image classification based on image objects was created from 2007 and 2013 National Agriculture Imagery Program color-infrared aerial photography. The final products consisted of two 10-meter raster datasets. Each image object from the 2007 and 2013 spatial datasets was assigned a vegetation classification by using a simple majority filter. In addition to those spatial datasets, we also conducted a change analysis between the datasets to produce a 10-meter change raster product. This analysis identified how much change has taken place and where change has occurred. The spatial data products show dynamic areas where marsh loss is occurring or where marsh type is changing. This information can be used to assist and advance conservation efforts for priority natural resources.</p>","language":"English","publisher":"U.S. Geological Survey","publisherLocation":"Reston, VA","doi":"10.3133/sir20175044","collaboration":"Prepared in cooperation with Bureau of Ocean Energy Management","usgsCitation":"Hartley, S.B., Couvillion, B.R., and Enwright, N.M., 2017, Delineation of marsh types and marsh-type change in coastal Louisiana for 2007 and 2013: U.S. Geological Survey Scientific Investigations Report 2017–5044, 6 p., https://doi.org/10.3133/20175044.","productDescription":"Report: vi, 6 p.; Data Release","onlineOnly":"Y","additionalOnlineFiles":"Y","ipdsId":"IP-084395","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research 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-92.493896484375,\n              30.07860131571654\n            ],\n            [\n              -92.713623046875,\n              30.130875412002318\n            ],\n            [\n              -92.83447265624999,\n              30.15462722077597\n            ],\n            [\n              -93.0322265625,\n              30.14512718337613\n            ],\n            [\n              -93.175048828125,\n              30.21635515266855\n            ],\n            [\n              -93.2574462890625,\n              30.24957724046765\n            ],\n            [\n              -93.4552001953125,\n              30.221101852485987\n            ],\n            [\n              -93.6968994140625,\n              30.15462722077597\n            ],\n            [\n              -93.702392578125,\n              30.07860131571654\n            ],\n            [\n              -93.7408447265625,\n              30.012030680358613\n            ],\n            [\n              -93.80126953124999,\n              29.921613319695577\n            ],\n            [\n              -93.91937255859375,\n              29.81205076752506\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","contact":"<p><a href=\"mailto: dc_warc@usgs.gov\" data-mce-href=\"mailto: dc_warc@usgs.gov\">Director</a>, <a href=\"https://www.usgs.gov/centers/wetland-and-aquatic-research-center-warc\" data-mce-href=\"https://www.usgs.gov/centers/wetland-and-aquatic-research-center-warc\">Wetland and Aquatic Research Center</a><br>U.S. Geological Survey<br>700 Cajundome Blvd.<br>Lafayette, LA 70506</p>","tableOfContents":"<ul><li>Abstract<br></li><li>Introduction<br></li><li>Methodology<br></li><li>Results<br></li><li>Discussion<br></li><li>References Cited<br></li></ul>","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"publishedDate":"2017-05-30","noUsgsAuthors":false,"publicationDate":"2017-05-30","publicationStatus":"PW","scienceBaseUri":"592e84b8e4b092b266f10d29","contributors":{"authors":[{"text":"Hartley, Stephen B. 0000-0003-1380-2769 hartleys@usgs.gov","orcid":"https://orcid.org/0000-0003-1380-2769","contributorId":4164,"corporation":false,"usgs":true,"family":"Hartley","given":"Stephen","email":"hartleys@usgs.gov","middleInitial":"B.","affiliations":[{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true},{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"preferred":true,"id":694488,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Couvillion, Brady R. 0000-0001-5323-1687 couvillionb@usgs.gov","orcid":"https://orcid.org/0000-0001-5323-1687","contributorId":3829,"corporation":false,"usgs":true,"family":"Couvillion","given":"Brady","email":"couvillionb@usgs.gov","middleInitial":"R.","affiliations":[{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true}],"preferred":false,"id":694489,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Enwright, Nicholas M. 0000-0002-7887-3261 enwrightn@usgs.gov","orcid":"https://orcid.org/0000-0002-7887-3261","contributorId":4880,"corporation":false,"usgs":true,"family":"Enwright","given":"Nicholas","email":"enwrightn@usgs.gov","middleInitial":"M.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true}],"preferred":true,"id":694490,"contributorType":{"id":1,"text":"Authors"},"rank":3}]}}
,{"id":70188027,"text":"70188027 - 2017 - Protozoal hepatitis in a western burrowing owl (<i>Athene cunicularia hypugaea</i>)","interactions":[],"lastModifiedDate":"2017-05-30T11:06:57","indexId":"70188027","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":3451,"text":"Southwestern Naturalist","active":true,"publicationSubtype":{"id":10}},"title":"Protozoal hepatitis in a western burrowing owl (<i>Athene cunicularia hypugaea</i>)","docAbstract":"<p><span>A western burrowing owl (</span><i><i>Athene cunicularia</i> hypugaea</i><span>) found dead in southern California had many light-colored lesions visible grossly on its liver, and histopathology revealed extensive necrosis throughout the hepatic parenchyma. Single-celled organisms were seen in clear spaces within the areas of necrosis. The owl was diagnosed with protozoal hepatitis.</span></p>","language":"English","publisher":"Southwestern Association of Naturalists","doi":"10.1894/0038-4909-62.1.75","usgsCitation":"Franson, J.C., 2017, Protozoal hepatitis in a western burrowing owl (<i>Athene cunicularia hypugaea</i>): Southwestern Naturalist, v. 62, no. 1, p. 75-77, https://doi.org/10.1894/0038-4909-62.1.75.","productDescription":"3 p.","startPage":"75","endPage":"77","ipdsId":"IP-074085","costCenters":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"links":[{"id":341829,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"62","issue":"1","publishingServiceCenter":{"id":6,"text":"Columbus PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592e84b7e4b092b266f10d22","contributors":{"authors":[{"text":"Franson, J. Christian 0000-0002-0251-4238 jfranson@usgs.gov","orcid":"https://orcid.org/0000-0002-0251-4238","contributorId":177499,"corporation":false,"usgs":true,"family":"Franson","given":"J.","email":"jfranson@usgs.gov","middleInitial":"Christian","affiliations":[{"id":456,"text":"National Wildlife Health Center","active":true,"usgs":true}],"preferred":true,"id":696234,"contributorType":{"id":1,"text":"Authors"},"rank":1}]}}
,{"id":70188021,"text":"70188021 - 2017 - Exogenous thyroid hormones regulate the activity of citrate synthase and cytochrome c oxidase in warm- but not cold-acclimated lake whitefish (<i>Coregonus clupeaformis</i>)","interactions":[],"lastModifiedDate":"2017-05-30T09:59:32","indexId":"70188021","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1738,"text":"General and Comparative Endocrinology","active":true,"publicationSubtype":{"id":10}},"title":"Exogenous thyroid hormones regulate the activity of citrate synthase and cytochrome c oxidase in warm- but not cold-acclimated lake whitefish (<i>Coregonus clupeaformis</i>)","docAbstract":"<p><span>Thermal acclimation is known to elicit metabolic adjustments in ectotherms, but the cellular mechanisms and </span><a class=\"linkText\" onclick=\"notifyWikiGadgets(&quot;endocrine&quot;,event,&quot;linkTextCallback&quot;,&quot;false&quot;);return false\" onmouseover=\"className='linkTextClicked';\" onmouseout=\"className='linkText';\" href=\"http://www.sciencedirect.com/topics/page/Endocrine_system\" data-mce-href=\"http://www.sciencedirect.com/topics/page/Endocrine_system\">endocrine</a><span> control of these shifts have not been fully elucidated. Here we examined the relationship between thermal acclimation, </span><a class=\"linkText\" onclick=\"notifyWikiGadgets(&quot;thyroid hormones&quot;,event,&quot;linkTextCallback&quot;,&quot;false&quot;);return false\" onmouseover=\"className='linkTextClicked';\" onmouseout=\"className='linkText';\" href=\"http://www.sciencedirect.com/topics/page/Thyroid_hormone\" data-mce-href=\"http://www.sciencedirect.com/topics/page/Thyroid_hormone\">thyroid hormones</a><span> and oxidative metabolism in juvenile lake whitefish. Impacts of thermal acclimation above (19&nbsp;°C) or below (8&nbsp;°C) the thermal optimum (13&nbsp;°C) and exposure to exogenous </span><a class=\"linkText\" onclick=\"notifyWikiGadgets(&quot;thyroid hormone&quot;,event,&quot;linkTextCallback&quot;,&quot;false&quot;);return false\" onmouseover=\"className='linkTextClicked';\" onmouseout=\"className='linkText';\" href=\"http://www.sciencedirect.com/topics/page/Thyroid_hormone\" data-mce-href=\"http://www.sciencedirect.com/topics/page/Thyroid_hormone\">thyroid hormone</a><span> (60&nbsp;µg T</span><sub>4</sub><span>/g body weight) were assessed by quantifying </span><a class=\"linkText\" onclick=\"notifyWikiGadgets(&quot;citrate&quot;,event,&quot;linkTextCallback&quot;,&quot;false&quot;);return false\" onmouseover=\"className='linkTextClicked';\" onmouseout=\"className='linkText';\" href=\"http://www.sciencedirect.com/topics/page/Citrates\" data-mce-href=\"http://www.sciencedirect.com/topics/page/Citrates\">citrate</a><span> synthase and cytochrome </span><i>c</i><span> oxidase activities in liver, red muscle, white muscle and heart. Warm acclimation decreased citrate synthase activity in liver and elevated both citrate synthase and cytochrome </span><i>c</i><span> oxidase activities in red muscle. In contrast, induction of hyperthyroidism in warm-acclimated fish stimulated a significant increase in liver citrate synthase and heart cytochrome </span><i>c</i><span> oxidase activities, and a decrease in the activity of both enzymes in red muscle. No change in citrate synthase or cytochrome </span><i>c</i><span> oxidase activities was observed following cold acclimation in either the presence or absence of exogenous thyroid hormones. Collectively, our results indicate that thyroid hormones influence the activity of oxidative enzymes more strongly in warm-acclimated than in cold-acclimated lake whitefish, and they may play a role in mediating metabolic adjustments observed during thermal acclimation.</span></p>","language":"English","publisher":"Elsevier","doi":"10.1016/j.ygcen.2017.02.005","usgsCitation":"Zak, M.A., Regish, A.M., McCormick, S.D., and Manzon, R.G., 2017, Exogenous thyroid hormones regulate the activity of citrate synthase and cytochrome c oxidase in warm- but not cold-acclimated lake whitefish (<i>Coregonus clupeaformis</i>): General and Comparative Endocrinology, v. 247, p. 215-222, https://doi.org/10.1016/j.ygcen.2017.02.005.","productDescription":"8 p.","startPage":"215","endPage":"222","ipdsId":"IP-078238","costCenters":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"links":[{"id":341815,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"247","publishingServiceCenter":{"id":10,"text":"Baltimore PSC"},"noUsgsAuthors":false,"publicationStatus":"PW","scienceBaseUri":"592d8edde4b08f9d15be7b7d","contributors":{"authors":[{"text":"Zak, Megan A.","contributorId":192318,"corporation":false,"usgs":false,"family":"Zak","given":"Megan","email":"","middleInitial":"A.","affiliations":[],"preferred":false,"id":696233,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Regish, Amy M. 0000-0003-4747-4265 aregish@usgs.gov","orcid":"https://orcid.org/0000-0003-4747-4265","contributorId":5415,"corporation":false,"usgs":true,"family":"Regish","given":"Amy","email":"aregish@usgs.gov","middleInitial":"M.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":696210,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"McCormick, Stephen D. 0000-0003-0621-6200 smccormick@usgs.gov","orcid":"https://orcid.org/0000-0003-0621-6200","contributorId":139214,"corporation":false,"usgs":true,"family":"McCormick","given":"Stephen","email":"smccormick@usgs.gov","middleInitial":"D.","affiliations":[{"id":365,"text":"Leetown Science Center","active":true,"usgs":true}],"preferred":true,"id":696208,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Manzon, Richard G.","contributorId":178142,"corporation":false,"usgs":false,"family":"Manzon","given":"Richard","email":"","middleInitial":"G.","affiliations":[],"preferred":false,"id":696211,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70188075,"text":"70188075 - 2017 - Relationships between gas field development and the presence and abundance of pygmy rabbits in southwestern Wyoming","interactions":[],"lastModifiedDate":"2018-08-10T16:14:26","indexId":"70188075","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":1475,"text":"Ecosphere","active":true,"publicationSubtype":{"id":10}},"title":"Relationships between gas field development and the presence and abundance of pygmy rabbits in southwestern Wyoming","docAbstract":"<p><span>More than 5957&nbsp;km</span><sup>2</sup><span> in southwestern Wyoming is currently covered by operational gas fields, and further development is projected through 2030. Gas fields fragment landscapes through conversion of native vegetation to roads, well pads, pipeline corridors, and other infrastructure elements. The sagebrush steppe landscape where most of this development is occurring harbors 24 sagebrush-associated species of greatest conservation need, but the effects of gas energy development on most of these species are unknown. Pygmy rabbits (</span><i>Brachylagus idahoensis</i><span>) are one such species. In 2011, we began collecting three years of survey data to examine the relationship between gas field development density and pygmy rabbit site occupancy patterns on four major Wyoming gas fields (Continental Divide–Creston–Blue Gap, Jonah, Moxa Arch, Pinedale Anticline Project Area). We surveyed 120 plots across four gas fields, with plots distributed across the density gradient of gas well pads on each field. In a 1&nbsp;km radius around the center of each plot, we measured the area covered by each of 10 gas field infrastructure elements and by shrub cover using 2012 National Agriculture Imagery Program imagery. We then modeled the relationship between gas field elements, pygmy rabbit presence, and two indices of pygmy rabbit abundance. Gas field infrastructure elements—specifically buried utility corridors and a complex of gas well pads, adjacent disturbed areas, and well pad access roads—were negatively correlated with pygmy rabbit presence and abundance indices, with sharp declines apparent after approximately 2% of the area consisted of gas field infrastructure. We conclude that pygmy rabbits in southwestern Wyoming may be sensitive to gas field development at levels similar to those observed for greater sage-grouse, and may suffer local population declines at lower levels of development than are allowed in existing plans and policies designed to conserve greater sage-grouse by limiting the surface footprint of energy development. Buried utilities, gas well pads, areas adjacent to well pads, and well pad access roads had the strongest negative correlation with pygmy rabbit presence and abundance. Minimizing the surface footprint of these elements may reduce negative impacts of gas energy development on pygmy rabbits.</span></p>","language":"English","publisher":"Ecological Society of America","doi":"10.1002/ecs2.1817","usgsCitation":"Germaine, S.S., Carter, S.K., Ignizio, D.A., and Freeman, A.T., 2017, Relationships between gas field development and the presence and abundance of pygmy rabbits in southwestern Wyoming: Ecosphere, v. 8, no. 5, e01817: 19 p., https://doi.org/10.1002/ecs2.1817.","productDescription":"e01817: 19 p.","ipdsId":"IP-080749","costCenters":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true},{"id":37226,"text":"Core Science Analytics, Synthesis, and Libraries","active":true,"usgs":true}],"links":[{"id":469821,"rank":1,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1002/ecs2.1817","text":"Publisher Index Page"},{"id":438328,"rank":0,"type":{"id":30,"text":"Data Release"},"url":"https://doi.org/10.5066/F7BR8QDD","text":"USGS data release","linkHelpText":"Analysis of Land Disturbance and Pygmy Rabbit Occupancy Values Associated With Oil and Gas Extraction in Southwestern Wyoming, 2012"},{"id":341871,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Wyoming","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -112,\n              40\n            ],\n            [\n              -105,\n              40\n            ],\n            [\n              -105,\n              45.75\n            ],\n            [\n              -112,\n              45.75\n            ],\n            [\n              -112,\n              40\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"8","issue":"5","publishingServiceCenter":{"id":2,"text":"Denver PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-15","publicationStatus":"PW","scienceBaseUri":"592e84b7e4b092b266f10d1f","contributors":{"authors":[{"text":"Germaine, Stephen S. 0000-0002-7614-2676 germaines@usgs.gov","orcid":"https://orcid.org/0000-0002-7614-2676","contributorId":192417,"corporation":false,"usgs":true,"family":"Germaine","given":"Stephen","email":"germaines@usgs.gov","middleInitial":"S.","affiliations":[{"id":222,"text":"Earth Resources Observation and Science (EROS) Center","active":true,"usgs":true},{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":696470,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Carter, Sarah K. 0000-0003-3778-8615","orcid":"https://orcid.org/0000-0003-3778-8615","contributorId":192418,"corporation":false,"usgs":true,"family":"Carter","given":"Sarah","email":"","middleInitial":"K.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":696471,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Ignizio, Drew A. 0000-0001-8054-5139 dignizio@usgs.gov","orcid":"https://orcid.org/0000-0001-8054-5139","contributorId":139842,"corporation":false,"usgs":true,"family":"Ignizio","given":"Drew","email":"dignizio@usgs.gov","middleInitial":"A.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":false,"id":696472,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Freeman, Aaron T. 0000-0001-9395-5604 afreeman@usgs.gov","orcid":"https://orcid.org/0000-0001-9395-5604","contributorId":5293,"corporation":false,"usgs":true,"family":"Freeman","given":"Aaron","email":"afreeman@usgs.gov","middleInitial":"T.","affiliations":[{"id":291,"text":"Fort Collins Science Center","active":true,"usgs":true}],"preferred":true,"id":696473,"contributorType":{"id":1,"text":"Authors"},"rank":4}]}}
,{"id":70188076,"text":"70188076 - 2017 - An accurate method for measuring triploidy of larval fish spawns","interactions":[],"lastModifiedDate":"2017-05-30T16:18:37","indexId":"70188076","displayToPublicDate":"2017-05-30T00:00:00","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":2885,"text":"North American Journal of Aquaculture","active":true,"publicationSubtype":{"id":10}},"title":"An accurate method for measuring triploidy of larval fish spawns","docAbstract":"<p><span>A standard flow cytometric protocol was developed for estimating triploid induction in batches of larval fish. Polyploid induction treatments are not guaranteed to be 100% efficient, thus the ability to quantify the proportion of triploid larvae generated by a particular treatment helps managers to stock high-percentage spawns and researchers to select treatments for efficient triploid induction. At 3 d posthatch, individual Grass Carp </span><i>Ctenopharyngodon idella</i><span> were mechanically dissociated into single-cell suspensions; nuclear DNA was stained with propidium iodide then analyzed by flow cytometry. Following ploidy identification of individuals, aliquots of diploid and triploid cell suspensions were mixed to generate 15 levels (0–100%) of known triploidy (</span><i>n</i><span> = 10). Using either 20 or 50 larvae per level, the observed triploid percentages were lower than the known, actual values. Using nonlinear regression analyses, quadratic equations solved for triploid proportions in mixed samples and corresponding estimation reference plots allowed for predicting triploidy. Thus, an accurate prediction of the proportion of triploids in a spawn can be made by following a standard larval processing and analysis protocol with either 20 or 50 larvae from a single spawn, coupled with applying the quadratic equations or reference plots to observed flow cytometry results. Due to the universality of triploid DNA content being 1.5 times the diploid level and because triploid fish consist of fewer cells than diploids, this method should be applicable to other produced triploid fish species, and it may be adapted for use with bivalves or other species where batch analysis is appropriate.</span></p>","language":"English","publisher":"American Fisheries Society","doi":"10.1080/15222055.2017.1296517","usgsCitation":"Jenkins, J.A., Draugelis-Dale, R.O., Glennon, R., Kelly, A.M., Brown, B.L., and Morrison, J., 2017, An accurate method for measuring triploidy of larval fish spawns: North American Journal of Aquaculture, v. 79, no. 3, p. 224-237, https://doi.org/10.1080/15222055.2017.1296517.","productDescription":"14 p.","startPage":"224","endPage":"237","ipdsId":"IP-065097","costCenters":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true}],"links":[{"id":341889,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"volume":"79","issue":"3","publishingServiceCenter":{"id":5,"text":"Lafayette PSC"},"noUsgsAuthors":false,"publicationDate":"2017-05-22","publicationStatus":"PW","scienceBaseUri":"592e84b5e4b092b266f10d1a","contributors":{"authors":[{"text":"Jenkins, Jill A. 0000-0002-5087-0894 jenkinsj@usgs.gov","orcid":"https://orcid.org/0000-0002-5087-0894","contributorId":2710,"corporation":false,"usgs":true,"family":"Jenkins","given":"Jill","email":"jenkinsj@usgs.gov","middleInitial":"A.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true}],"preferred":true,"id":696555,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"Draugelis-Dale, Rassa O. 0000-0001-8532-3287 daler@usgs.gov","orcid":"https://orcid.org/0000-0001-8532-3287","contributorId":20422,"corporation":false,"usgs":true,"family":"Draugelis-Dale","given":"Rassa","email":"daler@usgs.gov","middleInitial":"O.","affiliations":[{"id":17705,"text":"Wetland and Aquatic Research Center","active":true,"usgs":true},{"id":455,"text":"National Wetlands Research Center","active":true,"usgs":true}],"preferred":true,"id":696556,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Glennon, Robert","contributorId":192455,"corporation":false,"usgs":false,"family":"Glennon","given":"Robert","email":"","affiliations":[],"preferred":false,"id":696557,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Kelly, Anita M.","contributorId":192456,"corporation":false,"usgs":false,"family":"Kelly","given":"Anita","email":"","middleInitial":"M.","affiliations":[],"preferred":false,"id":696558,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Brown, Bonnie L.","contributorId":23083,"corporation":false,"usgs":false,"family":"Brown","given":"Bonnie","email":"","middleInitial":"L.","affiliations":[],"preferred":false,"id":696559,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Morrison, John","contributorId":192457,"corporation":false,"usgs":false,"family":"Morrison","given":"John","affiliations":[],"preferred":false,"id":696561,"contributorType":{"id":1,"text":"Authors"},"rank":6}]}}
,{"id":70211701,"text":"70211701 - 2017 - Sedimentological and petrographic analysis of drill core FC77-1 from the flank of the central uplift, Flynn Creek impact structure, Tennessee","interactions":[],"lastModifiedDate":"2020-08-07T13:55:50.807872","indexId":"70211701","displayToPublicDate":"2017-05-26T08:50:06","publicationYear":"2017","noYear":false,"publicationType":{"id":2,"text":"Article"},"publicationSubtype":{"id":10,"text":"Journal Article"},"seriesTitle":{"id":5996,"text":"Meteoritics & Planetary Science (MAPS)","active":true,"publicationSubtype":{"id":10}},"title":"Sedimentological and petrographic analysis of drill core FC77-1 from the flank of the central uplift, Flynn Creek impact structure, Tennessee","docAbstract":"<div class=\"article-section__content en main\"><p>Drill core FC 77‐1 on the flank of the central uplift, Flynn Creek impact structure, Tennessee, contains 175&nbsp;m of impact breccia lying upon uplifted Lower Paleozoic carbonate target stratigraphy. Sedimentological analysis of this 175‐m interval carbonate breccia shows that there are three distinct sedimentological units. In stratigraphic order, unit 1 (175–109&nbsp;m) is an overall coarsening‐upward section, whereas the overlying unit 2 (109–32&nbsp;m) is overall fining‐upward. Unit 3 (32–0&nbsp;m) is a coarsening‐upward sequence that is truncated at the top by postimpact erosion. Units 1 and 3 are interpreted as debris or rock avalanches into finer sedimentary deposits within intracrater marine waters, thus producing progressively coarser, coarsening‐upward sequences. Unit 2 is interpreted to have formed by debris or rock avalanches into standing marine waters, thus forming sequential fining‐upward deposits. Line‐logging of clasts ranging from 5&nbsp;mm to 1.6&nbsp;m, and thin‐section analysis of selected drill core samples (including clasts &lt; 5&nbsp;mm), both show that the Flynn Creek impact breccia consists almost entirely of dolostone clasts (90%), with minor components of cryptocrystalline melt clasts, chert and shale fragments, and clastic grains. Cryptocrystalline melt clasts, which appear isotropic in thin section, are in fact made of exceedingly fine quartz crystals that exhibit micro‐Fourier transform infrared (FTIR ) and micro‐Raman spectra consistent with crystalline quartz. These cryptocrystalline melt clasts are the first melt clasts of any kind to be reported from Flynn Creek impact structure.</p></div>","language":"English","publisher":"Wiley","doi":"10.1111/maps.12862","usgsCitation":"Adrian, D.R., King, D.T., Jaret, S.J., Ormo, J., Petruny, L.W., Hagerty, J., and Gaither, T., 2017, Sedimentological and petrographic analysis of drill core FC77-1 from the flank of the central uplift, Flynn Creek impact structure, Tennessee: Meteoritics & Planetary Science (MAPS), v. 53, no. 4, p. 857-873, https://doi.org/10.1111/maps.12862.","productDescription":"17 p.","startPage":"857","endPage":"873","ipdsId":"IP-081059","costCenters":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"links":[{"id":461555,"rank":0,"type":{"id":40,"text":"Open Access Publisher Index Page"},"url":"https://doi.org/10.1111/maps.12862","text":"Publisher Index Page"},{"id":377171,"type":{"id":24,"text":"Thumbnail"},"url":"https://pubs.usgs.gov/thumbnails/outside_thumb.jpg"}],"country":"United States","state":"Tennessee","otherGeospatial":"Flynn Creek","geographicExtents":"{\n  \"type\": \"FeatureCollection\",\n  \"features\": [\n    {\n      \"type\": \"Feature\",\n      \"properties\": {},\n      \"geometry\": {\n        \"type\": \"Polygon\",\n        \"coordinates\": [\n          [\n            [\n              -86.693115234375,\n              35.85789180225939\n            ],\n            [\n              -85.39672851562499,\n              35.85789180225939\n            ],\n            [\n              -85.39672851562499,\n              36.65079252503471\n            ],\n            [\n              -86.693115234375,\n              36.65079252503471\n            ],\n            [\n              -86.693115234375,\n              35.85789180225939\n            ]\n          ]\n        ]\n      }\n    }\n  ]\n}","volume":"53","issue":"4","noUsgsAuthors":false,"publicationDate":"2017-05-26","publicationStatus":"PW","contributors":{"authors":[{"text":"Adrian, D. R.","contributorId":237076,"corporation":false,"usgs":false,"family":"Adrian","given":"D.","email":"","middleInitial":"R.","affiliations":[{"id":13360,"text":"Auburn University","active":true,"usgs":false}],"preferred":false,"id":795166,"contributorType":{"id":1,"text":"Authors"},"rank":1},{"text":"King, D. T.","contributorId":237077,"corporation":false,"usgs":false,"family":"King","given":"D.","email":"","middleInitial":"T.","affiliations":[{"id":13360,"text":"Auburn University","active":true,"usgs":false}],"preferred":false,"id":795167,"contributorType":{"id":1,"text":"Authors"},"rank":2},{"text":"Jaret, S. J.","contributorId":237078,"corporation":false,"usgs":false,"family":"Jaret","given":"S.","email":"","middleInitial":"J.","affiliations":[{"id":36488,"text":"Stony Brook University","active":true,"usgs":false}],"preferred":false,"id":795168,"contributorType":{"id":1,"text":"Authors"},"rank":3},{"text":"Ormo, J.","contributorId":237079,"corporation":false,"usgs":false,"family":"Ormo","given":"J.","affiliations":[{"id":47594,"text":"Centro de Astrobiologia","active":true,"usgs":false}],"preferred":false,"id":795169,"contributorType":{"id":1,"text":"Authors"},"rank":4},{"text":"Petruny, L. W.","contributorId":237080,"corporation":false,"usgs":false,"family":"Petruny","given":"L.","email":"","middleInitial":"W.","affiliations":[{"id":13360,"text":"Auburn University","active":true,"usgs":false}],"preferred":false,"id":795170,"contributorType":{"id":1,"text":"Authors"},"rank":5},{"text":"Hagerty, Justin 0000-0003-3800-7948 jhagerty@usgs.gov","orcid":"https://orcid.org/0000-0003-3800-7948","contributorId":911,"corporation":false,"usgs":true,"family":"Hagerty","given":"Justin","email":"jhagerty@usgs.gov","affiliations":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"preferred":true,"id":795171,"contributorType":{"id":1,"text":"Authors"},"rank":6},{"text":"Gaither, Tenielle 0000-0003-4230-3678","orcid":"https://orcid.org/0000-0003-4230-3678","contributorId":237081,"corporation":false,"usgs":true,"family":"Gaither","given":"Tenielle","affiliations":[{"id":131,"text":"Astrogeology Science Center","active":true,"usgs":true}],"preferred":true,"id":795172,"contributorType":{"id":1,"text":"Authors"},"rank":7}]}}
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