Scientific Investigations Report 2006–5230
U.S. GEOLOGICAL SURVEY
Scientific Investigations Report 2006–5230
Arthaud, D., Kratz, K., Vandemoer, K., and Grady, M., 2001, Protocol for estimating tributary streamflow to protect salmon listed under the Endangered Species Act - Draft: National Marine Fisheries Service, Habitat Conservation Division, Northwest Region, 24 p.
Baker E.A., and Coon, T.G., 1997, Development and evaluation of alternative habitat suitability criteria for brook trout: Transactions of the American Fisheries Society, v. 126, p. 65-76.
Beitinger, T.L., Bennett, W.A., and McCauley, R.W., 2000, Temperature tolerances of North American freshwater fishes exposed to dynamic changes in temperature: Environmental Biology of Fishes, v. 58, p. 237-275.
Benson, M.A., and Dalrymple, T., 1967, General field and office procedures for indirect discharge measurements: U.S. Geological Survey Techniques of Water-Resources Investigations, book 3, chap. A1, 30 p.
Bohn, C.C., and King, J.G., 2000, Stream channel responses to streamflow diversions on small streams of the Snake River drainage, Idaho: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station, Res. Pap. RMRS-RP-20, Ogden, Utah, 19 p.
Bovee, K.D., 1997, Data collection procedures for the Physical Habitat Simulation System: Fort Collins, Colo., U.S. Geological Survey, Biological Resources Division, 141 p.
Bovee, K.D., and Cochnauer, T., 1977, Development and evaluation of weighted criteria, probability of use curves for instream flow assessments−fisheries: U.S. Fish and Wildlife Service FWS/OBS-77/63, 39 p.
Bovee, K.D., Lamb, B.L., Bartholow, J.M., Stalnaker, C.B., Taylor, J., and Henricksen, J., 1998, Stream habitat analysis using the instream flow incremental methodology: U.S. Geological Survey Biological Resources Division Information and Technology Report USGS/BRD/ITR—1998-0004, 130 p.
Chapman, D.W., 1986, Salmon and steelhead abundance in the Columbia River in the nineteenth century: Transactions of the American Fisheries Society, v. 115, p. 662-670.
Cochnauer, T., and Elms-Cockrum, T., 1986, Subproject II. Regional coordination and assistance job #1-a. probability of use curves for selected Idaho fish species: Idaho Department of Fish and Game, 49 p.
Coutant, C.C., 1976, Thermal effects on fish ecology, in Encyclopedia of Environmental Science and Engineering: New York, Gordon and Breach, v. 2, p. 891-896.
Crance, J.H., 1985, Delphi technique procedures used to develop habitat suitability index models and instream flow suitability curves for inland stocks of striped bass: Fort Collins, Colo., U.S. Fish and Wildlife Service, WELUT-85/W07, 58 p.
Donato, M.M., 2002, A statistical model for estimating stream temperatures in the Salmon and Clearwater River Basins, central Idaho: U.S. Geological Survey Water-Resources Investigations Report 02-4195, 39 p.
EA Engineering, Science, and Technology, Inc., 1989, Idaho instream flow studies, task 5 report−model evaluation and selection: Redmond, Wash., Prepared for Bureau of Indian Affairs, variously paged.
EA Engineering, Science, and Technology, Inc., 1991a, Review, evaluation and selection of final habitat suitability curves—Idaho instream flow project: Redmond, Wash., prepared for Bureau of Indian Affairs, variously paged.
EA Engineering, Science, and Technology, Inc., 1991b, Fish species periodicity within the Clearwater and Salmon River Basins, Idaho, Idaho instream flow studies: Redmond, Wash., Prepared for Bureau of Indian Affairs, variously paged.
EA Engineering, Science, and Technology, Inc., 1992a, Development and evaluation of flow recommendation procedures for use on the Idaho instream flow study: Redmond, Wash., Prepared for Bureau of Indian Affairs, 22 p.
EA Engineering, Science, and Technology, Inc., 1992b, Fish species distributions within the Salmon, Clearwater, Middle Snake, Weiser and North Fork Payette drainages of Idaho: Redmond, Wash., Prepared for Bureau of Indian Affairs, variously paged.
EA Engineering Science and Technology, Inc., 1992c, Stream flow and its relationship to the freshwater migrations of anadromous salmonids: Redmond, Wash., Prepared for Bureau of Indian Affairs, variously paged.
Emmett, W.W., 1975, The channels and waters of the upper Salmon River area, Idaho: U.S. Geological Survey Professional Paper 870-A, 116 p.
Essig, D.A., 1998, The dilemma of applying uniform temperature criteria in a diverse environment−an issue analysis: Boise, Idaho Division of Environmental Quality, 29 p.
Everest, F.H., and Chapman, D.W., 1972, Habitat selection and spatial interaction by juvenile Chinook salmon and steelhead trout in two Idaho streams: Journal of the Fisheries Research Board of Canada, v. 29, p. 91-100.
Fitzpatrick, F.A., Waite, I.R., D’Arconte, P.J., Meador, M.E., Maupin, M.A., and Gurtz, M.E., 1998, Revised methods for characterizing stream habitat in the National Water-Quality Assessment Program: U.S. Geological Survey Water‑Resources Investigations Report 98-4052, 67 p.
Gore, J.A., Layzer, J.B., and Mead, J., 2001, Macroinvertebrate instream flow studies after 20 years: a role in stream management and restoration: Regulated Rivers: Research and Management, v. 17, p. 527-542.
Grafe, C.S., Mebane, C.A., McIntyre, M.J., Essig, D.A., Brandt, D.H., and Mosier, D.T., 2002, The Idaho Department of Environmental Quality water body assessment guidance (2d ed.): Idaho Department of Environmental Quality, 230 p.
Hampton, M., 1988, Development of habitat preference criteria for anadromous salmonids of the Trinity River: Sacramento, Calif., U.S. Fish and Wildlife Service, Division of Ecological Services, 93 p.
Hardy, T.B., 1997, Methodologies for quantification of multiple-use sustained-yield act claims: U.S. Forest Service, Boise Adjudication Team, Expert Witness Report, District Court of the Fifth Judicial District of the State of Idaho, in and for the County of Twin Falls, Case No. 39576, variously paged.
Hardy, T.B., Bart, B., and Carter, W., 1992, Region 1 and Region 4 hydraulic and habitat modeling, channel maintenance modeling data base and analysis system: Ogden, Utah, U.S. Forest Service, 114 p.
Hatfield, T., and Bruce, J., 2000, Predicting salmonid habitat-flow relationships for streams from Western North America: North American Journal of Fisheries Management, v. 20, p. 1005-1015.
Hillman, T.W., Griffith, J.S., and Plats, W.S., 1987, Summer and winter habitat selection by juvenile Chinook salmon in a highly sedimented Idaho stream: Transactions of the American Fisheries Society, v. 116, p. 185-195.
Hortness, J.E., and Berenbrock, Charles, 2001, Estimating monthly and annual streamflow statistics at ungaged sites in Idaho: U.S. Geological Survey Water-Resources Investigations Report 01-4093, 36 p.
Idaho Department of Environmental Quality, 2003, Upper Salmon River subbasin assessment and TMDL: Boise, Idaho Department of Environmental Quality, 216 p.
Instream Flow Council, 2004, Instream flows for riverine resource stewardship (revised ed.): chap. 6, Instream flow assessment tools, p. 129-189.
Jowett, I.G., 2003, Hydraulic constraints on habitat suitability for benthic invertebrates in gravel-bed rivers: River Research and Applications v. 19, p. 495-507.
King, P.B., and Beikman, H.M., 1974, Geologic map of the United States: U.S. Geological Survey, 2 pls., scale 1:2,500,000.
Lipscomb, S.W., 1998, Hydrologic classification and estimation of basin and hydrologic characteristics of subbasins in central Idaho: U.S. Geological Survey Professional Paper 1604, 49 p.
Maret, T.R., Hortness, J.E., and Ott, D.S., 2004, Instream flow characterization of upper Salmon River Basin streams, central Idaho, 2003: U.S. Geological Survey Scientific Investigations Report 2004‑5173, 158 p., accessed April 2004 at http://id.water.usgs.gov/public/reports.html.
Maret, T.R., Hortness, J.E., and Ott, D.S., 2005, Instream flow characterization of upper Salmon River Basin streams, central Idaho, 2004: U.S. Geological Survey Scientific Investigations Report 2005‑5212, 122 p., accessed April 2005 at http://id.water.usgs.gov/public/reports.html.
Maret, T.R., MacCoy, D.E., Skinner, K.D., Moore, S.E., and O’Dell, I., 2001, Evaluation of macroinvertebrate assemblages in Idaho rivers using multimetric and multivariate techniques, 1996‑1998: U.S. Geological Survey Water-Resources Investigations Report 01-4145, 69 p.
McCullough, D.A., Spalding, S., Sturdevant, D., and Hicks, M., 2001, Summary of technical literature examining the physiological effects of temperature on salmonids, issue paper 5: U.S. Environmental Protection Agency, EPA-910-D-01-005, 114 p.
McGrath, C.L., Woods, A.J., Omernik, J.M., Bryce, S.A., Edmondson, M., Nesser, J.A., Shelden, J., Crawford, R.C., Comstock, J.A., and Plocher, M.D., 2001, Ecoregions of Idaho (color poster with map, descriptive text, summary tables, and photographs): U.S. Geological Survey (map scale 1:1,350,000).
McHugh P., Budy, P., and Schaller, H., 2004, A model-based assessment of the potential response of Snake River spring-summer Chinook salmon to habitat improvement: Transactions of the American Fisheries Society, no. 133, p. 622-638.
Montgomery Watson Harza, 2002, Challis Creek fish screening and passage plan: Prepared for Idaho Department of Fish and Game, Boise, Idaho, variously paginated.
Munther, G., 1974, Fishery effects of irrigation diversion and related structures in the Sawtooth National Recreation Area−progress report 1: U.S. Forest Service, 68 p.
Murphy, P., and Yanke, J., 2003a, Challis Creek fisheries report: Salmon, Idaho, Idaho Department of Fish and Game Anadromous Screen Program, Region 7, 40 p.
Murphy, P., and Yanke, J., 2003b, Morgan Creek fisheries report: Salmon, Idaho, Idaho Department of Fish and Game Anadromous Screen Program, Region 7, 81 p.
National Oceanic and Atmospheric Administration, 2000, Endangered Species Act−Section 7 Consultation, Biological Opinion, Reinitiation of consultation on operation of the Federal Columbia River Power System, including the Juvenile Fish Transportation Program, and 19 Bureau of Reclamation projects in the Columbia Basin: accessed January 12, 2004, at http://www.nwr.noaa.gov/1hydrop/hydroweb/docs/Final/2000Biop.html
National Oceanic and Atmospheric Administration, 2002, Protected resources, sockeye salmon (Oncorhynchus nerka): accessed March 19, 2004, at http://www.nwr.noaa.gov/1salmon/salmesa/socksnk.htm.
Natural Resources Conservation Service, 2006a, National Water and Climate Center, snowpack reports, water year 2005: accessed March 2006, at http://www.wcc.nrcs.usda.gov/snowcourse/snow_rpt.html
Natural Resources Conservation Service, 2006b, State basin outlook reports, water year 2005: accessed March 2006, at http://www.wcc.nrcs.usda.gov/cgibin/bor.pl.
Nehlsen, W., Williams, J.E., and Lichatowich, J.A., 1991, Pacific salmon at the crossroads: stocks at risk from California, Oregon, Idaho, and Washington: Fisheries, v. 16, no. 2, p. 4-21.
Nislow, K.H., Sepulveda, A.J., and Folt, C.L., 2004, Mechanistic linkage of hydrologic regime to summer growth of age-0 Atlantic salmon: Transactions of the American Fisheries Society, v. 133, p. 79-88.
Ott, D.S., and Maret, T.R., 2003, Aquatic assemblages and their relation to temperature variables of least-disturbed streams in the Salmon River Basin, central Idaho, 2001: U.S. Geological Survey Water-Resources Investigations Report 03-4076., 45 p.
Poole, G., Dunham, J., Hicks, M., Keenan, D., Lockwood, J., Materna, E., McCullough, D., Mebane, C., Risley, J., Sauter, S., Spalding, S., and Sturdevant, D., 2001, Scientific issues relating to temperature criteria for salmon, trout, and char native to the Pacific Northwest−Technical Synthesis of the Water Temperature Criteria Technical Workgroup: U.S. Environmental Protection Agency, Region 10, 21 p.
Quinn, T.P., 2005, The behavior and ecology of Pacific salmon and trout: Seattle University of Washington Press, Chap. 11, Juvenile salmonids in streams, p. 185-208.
Raleigh, R.F., Miller, W.J., and Nelson, P.C., 1986, Habitat suitability index model and instream flow suitability curves−Chinook salmon: U.S. Fish and Wildlife Service Biological Report 82 (10.122), 64 p.
Rantz, S.E., 1982, Measurement and computation of streamflow−Volume 1. Measurement of stage and discharge: U.S. Geological Survey Water-Supply Paper 2175, 284 p.
Roper, B.B., Scarnecchia, D.L., and LaMarr, T.J., 1994, Summer distribution of and habitat use by Chinook salmon and steelhead within a major basin of the south Umpqua River, Oregon: Transactions of the American Fisheries Society, v. 123, p. 298-308.
Rubin, S.P., Bjornn, T.C., and Dennis, B., 1991, Habitat suitability curves for juvenile Chinook salmon and steelhead developed using a habitat-oriented sampling approach: Rivers, v. 2, no. 1, p. 12-29.
R2 Resource Consultants, 2004, Instream flow claims for the Snake River Basin Adjudication, Idaho: Redmond, Wash., Prepared for Bureau of Indian Affairs, v. 1, part 1 – main report, variously paged.
Sauter, S.T., McMillan, J., and Dunham, J., 2001, Salmonid behavior and water temperature, issue paper 1: U.S. Environmental Protection Agency, EPA-910-D-01-001, 36 p.
Scott, M., Contreras, G., Forsgren, H., Reynoldson, K., and McDevitt, G., 1981, Anadromous fish instream flow needs and conflicts within the Sawtooth National Recreation Area: U.S. Forest Service, 46 p.
Selong, J.H., McMahon, T.E., Zale, A.V., and Barrows, F.T., 2001, Effect of temperature on growth and survival of bull trout, with application of an improved method for determining thermal tolerance in fishes: Transactions of the American Fisheries Society, v. 130, p. 1026–1037.
Spinazola, J.M., 2002, Upper Salmon River Basin flow characterization studies: Boise, Idaho, Bureau of Reclamation, 4 p.
Stevens, H.H., Jr., Ficke, J.F., and Smoot, G.F., 1975, Water temperature−influential factors, field measurement, and data presentation: U.S. Geological Survey Techniques of Water‑Resources Investigations, book 1, chap. D1, 65 p.
Sutton, R. and Morris, C., 2004, Instream flow assessment Big Timber Idaho: Bureau of Reclamation, Technical Services Center, Denver, 119 p., accessed April 2004 at http://www.usbr.gov/pn/programs/fcrps/pdf/instreamflow-june2004.pdf.
Sutton, R. and Morris, C., 2005, Instream flow assessment Big Eightmile Creek, Bohannon Creek, and Hayden Creek, Idaho: Bureau of Reclamation, Technical Services Center, Denver, 183 p., accessed April 2005 at http://www.usbr.gov/pn/programs/fcrps/pdf/instreamflow-june2005.pdf.
Tennant, D.L., 1976, Instream flow regimens for fish, wildlife, recreation, and related environmental resources, in Osborne, J., and Allman, C., eds., Instream flow needs, volume 2: Bethesda, Md., American Fisheries Society, Western Division, p. 359-373.
Thompson, K.E., 1972, Determining stream flows for fish life: Proceedings of the Instream Flow Requirement Workshop, March 15-16, 1972, Portland, Oreg.: Pacific Northwest River Basins Commission, p. 31-50.
Thurow, R.F., 2000, Dynamics of Chinook salmon populations within Idaho’s Frank Church Wilderness−implications for persistence in McCool, S.F., and others, comps., v. 3—Wilderness as a place for scientific inquiry: Proceedings of the wilderness science in a time of change conference, Missoula, Montana, May 23-27, 1999, U.S. Forest Service RMRS-P-15-VOL-3, p. 143-151.
Thurow, R.F., Lee, D.C., and Rieman, B.E., 2000, Status and distribution of Chinook salmon and steelhead in the Interior Columbia River Basin and portions of the Klamath River Basin, in Knudsen, E.E., Steward, C.R., MacDonald, D.D., Williams, J.E., and Reiser, D.W., eds., Sustainable fisheries management−Pacific salmon: Boca Raton, Fla., Lewis Publishers, p. 133-160.
Waddle, T.J., 2001, PHABSIM for Windows—user’s manual and exercises: U.S. Geological Survey Open-File Report 01-340, 288 p.
Western Regional Climate Center, 2006, Desert Research Institute, Idaho climate summaries: accessed January 2005, at http://www.wrcc.dri.edu/summary/climsmid.html.
Zaroban, D.W., 2000, Protocol for placement and retrieval of temperature data loggers in Idaho streams: Idaho Department of Environmental Quality, Water Quality Monitoring Protocols, Report no. 10, 34 p.
U.S.
Department of the Interior | U.S. Geological
Survey
Persistent URL: https://pubs.water.usgs.gov/sir20065230
Page Contact Information: Publications Team
Page Last Modified: Thursday, 01-Dec-2016 19:19:02 EST
