References Cited

Barton, G.J., 1998, Subbottom seismic-reflection profiling on the Kootenai River near Bonners Ferry, Idaho [abs.]: Proceedings of Ninth Annual Nonpoint Source Water Quality Monitoring Results Workshop, Boise, Idaho, 1 p.

Barton, G.J., 2004, Characterization of channel substrate, and changes in suspended sediment transport and channel geometry in white sturgeon spawning habitat in the Kootenai River near Bonners Ferry, Idaho, following the closure of Libby Dam: U.S. Geological Survey Water‑Resources Investigations Report 03-4324, 102 p.

Barton, G.J., and Ireland, S., 2000, Simulation of sediment transport in white sturgeon spawning habitat and assessment of the feasibility of enhancing spawning substrate, Kootenai River, Idaho: Columbia Basin Fish and Wildlife Authority, accessed August 4, 2005, at http://www.cbfwa.org/FWProgram/ResultProposal.cfm?PPID=MC2002000024009

Barton, G., McDonald, R., Berenbrock, C., Nelson, J., Ireland, S., and Paragamian, V., 2006a, Altered dynamics of the Kootenai River white sturgeon habitat—Historic and recent data and hydraulic-sediment-transport modeling [abs]: Anchorage, Alaska, Annual American Fisheries Society conference, September 17, 2006, 1 p.

Barton, Gary, McDonald, Richard, Nelson, Jonathan, Berenbrock, Charles, Donato, Mary, VanMetre, Peter, and Mahler, Barbara, 2006b, Altered dynamics of the Kootenai River white sturgeon spawning habitat and flow modeling in Proceedings of the Joint 8^th Federal Interagency Sedimentation Conference, and the 3^rd Federal Interagency Hydrologic Modeling Conference, Reno, Nev., April 2–6, 2006, 8 p., accessed January 30, 2007, at http://pubs.usgs.gov/misc_reports/FISC_1947-2006/pdf/1st-7thFISCs-CD/8thFISC/8thFISC_Barton.pdf

Barton, G.J., McDonald, R.R., Nelson, J.M., and Dinehart, R.L., 2005, Simulation of flow and sediment mobility using a multidimensional flow model for the white sturgeon critical-habitat reach, Kootenai River near Bonners Ferry, Idaho: U.S. Geological Survey Scientific Investigations Report 2005-5230, 54 p. Available at http://pubs.usgs.gov/sir/2005/5230/pdf/sir20055230.pdf

Barton, G., McDonald, R., Nelson, J., Tranmer, A., Ireland, S., and Paragamian, V., 2006c, Kootenai River white sturgeon habitat and hydrodynamic modeling [abs.]: Boise, Idaho, University of Idaho, Idaho Water Resources research symposia to support management of Idaho’s waters, July 25, 2006, 1 p.

Barton, G.J., Moran, E.H., and Berenbrock, Charles, 2004, Surveying cross sections of the Kootenai River between Libby Dam, Montana, and Kootenay Lake, British Columbia, Canada: U.S. Geological Survey Open-File Report 2004–1045, 25 p., accessed December 15, 2006, at http://id.water.usgs.gov/PDF/ofr041045/.

Berenbrock, Charles, 2005, 1D simulations of hydraulic characteristics in the white sturgeon spawning habitat of the Kootenai River near Bonners Ferry, Idaho: U.S. Geological Survey Scientific Investigations Report 2005-5110, 30 p. Available at http://pubs.usgs.gov/sir/2005/5110/.

Berenbrock, Charles, 2006, Simulations of hydraulic characteristics in an upstream extension of the White River spawning habitat of the Kootenai River near Bonners Ferry, Idaho—A supplement to Scientific Investigations Report 2005-5110: U.S. Geological Survey Scientific Investigations Report 2006-5110, 17 p. Available at http://pubs.usgs.gov/sir/2006/5019/.

Berenbrock, Charles, and Bennett, J.P., 2005, Simulation of flow and sediment transport in the white sturgeon spawning habitat of the Kootenai River near Bonners Ferry, Idaho: U.S. Geological Survey Scientific Investigations Report 2005-5173, 43 p. Available at http://pubs.usgs.gov/sir/2005/5173/.

Dinehart, R.L., 2003, Spatial analysis of ADCP data in streams, in Gray, J.R., ed., Proceedings of the Federal Interagency Sediment Monitoring Instrument and Analysis Research Workshop, September 9-11, 2003, Flagstaff, Arizona: U.S. Geological Survey Circular 1276, 8 p., accessed on January 21, 2007, at http://water.usgs.gov/osw/techniques/sediment/sedsurrogate2003workshop/dinehart.pdf

Lisle, T.E., Nelson, J.M., Pitlick, J., Madej, M.A., and Barkett, B.L., 2000, Variability of bed mobility in natural, gravel-bed channels and adjustments to sediment load at local and reach scales: Water Resources Research, v. 26, no. 12, p. 3743-3755.

McDonald, R.R., Barton, G.J., Nelson, J.M., and Paragamian, V., 2006a, Modeling hydraulic and sediment transport processes in white sturgeon spawning habitat on the Kootenai River, in Proceedings: The Joint 8th Federal Interagency Sedimentation and 3rd Federal Interagency Hydrologic Modeling Conference, Reno, Nevada, April 2-6, 2006, 8 p., accessed May 20, 2007, at http://pubs.usgs.gov/misc_reports/FISC_1947-2006/pdf/1st-7thFISCs-CD/8thFISC/8thFISC_McDonald.pdf

McDonald, R.R., Bennett, J.P., and Nelson, J.M., 2001, The USGS multi-dimensional surface water modeling system, in Proceedings of the Federal Interagency Sedimentation Conference, 7^th, Reno, Nev., March 21-25, 2001: Reno, Nev., Subcommittee on Sedimentation, p. I-161–I-167.

McDonald, R.R., Nelson, J.M., Barton, G., and Paragamian, V., 2004, Flow and sediment-transport modeling of Kootenai River White Sturgeon spawning habitat [abs]: Eos, Transactions of the American Geophysical Union, v. 85, no. 47, Abstract H53B-1239.

McDonald, R.R., Nelson, J.M., and Bennett, J.P., 2006b, Multi-dimensional surface-water modeling system user’s guide: U.S. Geological Survey Techniques in Water Resources Investigations 11-B2, 136 p.

McDonald, R.R., Nelson, J.M., Kinzel, P.J., and Conaway, J., 2006c, Modeling surface-water flow and sediment mobility with the Multi-Dimensional Surface Water Modeling System (MD_SWMS): U.S. Geological Survey Fact Sheet 2005-3078, 4 p.

Nelson, J.M., Bennett, J.P., and Wiele, S.M., 2003, Flow and sediment-transport modeling, in Kondolf, G.M., and Piegay, H., eds., Tools in fluvial geomorphology: Chichester, England, Wiley, p. 539-576.

Nelson, J.M., and McDonald, R.R., 1997, Mechanics and modeling of flow and bed evolution in lateral separation eddies: Bureau of Reclamation, Glen Canyon Environmental Studies Report, 69 p.

Nelson, J.M., and Smith, J.D., 1989, Flow in meandering channels with natural topography, in Inkeda, S., and Parker, G., eds., River meandering: Washington, D.C., American Geophysical Union Water Resources Monograph v. 12, p. 69-102.

Paragamian, V.L., Barton, G.J., and Ireland, S., 2001, Have we found the pre-Libby Dam spawning location of Kootenai River white sturgeon? [abs.]: Proceedings, Idaho Chapter of the American Fisheries Society Annual Meeting, Boise, Idaho, February 22–24, 2001, p. 1.

Paragamian, V.L., Wakkinnen, V.D., and Crews, G., 2002, Spawning locations and movement of Kootenai River white sturgeon: Journal of Applied Ichthyology, v. 18, 9 p.

Parsley, M.J., and Beckman, L.G., 1994, White sturgeon spawning and rearing habitat in the lower Columbia River: North American Journal of Fish Management, v. 14, p. 812-827.

Parsley, M.J., Beckman, L.G., and McCabe, G.T., Jr., 1993, Spawning and rearing habitat used by white sturgeon in the Columbia River downstream of McNary Dam: Transactions of the American Fisheries Society, v. 122, p. 217-227.

Tetra Tech, Inc., 2003, Kootenai River geomorphic assessment: Seattle, Wash., Tetra Tech, Inc., 114 p.

Thompson, D.M., Nelson, J.M., and Wohl, E.E., 1998, Interactions between pool geometry and hydraulics: Water Resources Research, v. 34, no. 12, p. 3673-3681.

U.S. Fish and Wildlife Service, 1999, Recovery plan for the Kootenai River population of the white sturgeon (Acipenser transmontanus): Portland, Oreg., U.S. Fish and Wildlife Service, variously paginated.

U.S. Fish and Wildlife Service, 2000, Biological opinion on effects to listed species from operation of the Federal Columbia River Power System: Portland, Oreg., U.S. Fish and Wildlife Service, variously paginated.

U.S. Fish and Wildlife Service, 2006, Biological opinion on effects to listed species from operation of the Federal Columbia River Power System: Portland, Oreg., U.S. Fish and Wildlife Service, variously paginated.

Wu, F.C., Shen, H.W., and Chou, Y.J., 1999, Variation of roughness coefficients for unsubmerged and submerged vegetation: Journal of Hydraulic Engineering, v. 125, no. 9, p. 934-942.