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Publications for publication type Article and publication subtype Journal Article

• A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images, 2025, Methods in Ecology and Evolution (16) - 1
• Propagating observation errors to enable scalable and rigorous enumeration of plant population abundance with aerial imagery, 2024, Methods in Ecology and Evolution (15) - 11
• A heuristic method to evaluate consequences for flight control and stability induced by attachment of biologging devices to birds and bats, 2024, Methods in Ecology and Evolution (15) - 9
• Geographic principles applied to population dynamics: A spatially interpolated integrated population model, 2024, Methods in Ecology and Evolution (15) - 8
• Managing ecosystems with resist-accept-direct (RAD), 2024, Methods in Ecology and Evolution (15) - 5
• occupancyTuts: Occupancy modelling tutorials with RPresence, 2024, Methods in Ecology and Evolution (15) - 3
• BatTool: Projecting bat populations facing multiple stressors using a demographic model, 2023, Methods in Ecology and Evolution (23) -
• Positioning aquatic animals with acoustic transmitters, 2023, Methods in Ecology and Evolution (14) - 10
• A hierarchical modelling framework for estimating individual- and population-level reproductive success from movement data, 2023, Methods in Ecology and Evolution (14) - 8
• MetaIPM: Placing integral projection models into a metapopulation framework, 2023, Methods in Ecology and Evolution (14) - 9
• Improving ecological data science with workflow management software, 2023, Methods in Ecology and Evolution (14) - 6
• Inferring pathogen presence when sample misclassification and partial observation occur, 2023, Methods in Ecology and Evolution (14) - 5
• Estimating reproductive and juvenile survival rates when offspring ages are uncertain: A novel multievent mark-resight model with beluga whale case study, 2023, Methods in Ecology and Evolution (14) - 2
• A practical guide to understanding and validating complex models using data simulations, 2023, Methods in Ecology and Evolution (14) - 1
• A review of supervised learning methods for classifying animal behavioural states from environmental features, 2023, Methods in Ecology and Evolution (14) - 1
• The power of forecasts to advance ecological theory, 2023, Methods in Ecology and Evolution (14) - 3
• Know what you don't know: Embracing state uncertainty in disease-structured multistate models, 2022, Methods in Ecology and Evolution (13) - 12
• Migration Mapper: Identifying movement corridors and seasonal ranges for large mammal conservation, 2022, Methods in Ecology and Evolution (13) - 11
• Defining fine-scaled population structure among continuously distributed populations, 2022, Methods in Ecology and Evolution (13) - 10
• Spatial dynamic N-mixture models with interspecific interactions, 2022, Methods in Ecology and Evolution (13) - 10
• Spatially explicit management of genetic diversity using ancestry probability surfaces, 2022, Methods in Ecology and Evolution (13) - 12
• Estimating occupancy from autonomous recording unit data in the presence of misclassifications and detection heterogeneity, 2022, Methods in Ecology and Evolution (13) - 8
• Ignoring species availability biases occupancy estimates in single-scale occupancy models, 2022, Methods in Ecology and Evolution (13) - 8
• Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach, 2022, Methods in Ecology and Evolution (13) - 7
• Coupling validation effort with in situ bioacoustic data improves estimating relative activity and occupancy for multiple species with cross-species misclassifications, 2022, Methods in Ecology and Evolution (13) - 6
• Pedigree accumulation analysis: Combining methods from community ecology and population genetics for breeding adult estimation, 2021, Methods in Ecology and Evolution (12) - 12
• Instrumental variable methods in structural equation models, 2021, Methods in Ecology and Evolution (12) - 7
• A roadmap for sampling and scaling biological nitrogen fixation in terrestrial ecosystems, 2021, Methods in Ecology and Evolution (12) - 6
• Improving Landsat predictions of rangeland fractional cover with multitask learning and uncertainty, 2021, Methods in Ecology and Evolution (12) - 5
• Scenarios for valuing sample information in natural resources, 2020, Methods in Ecology and Evolution (11) - 12
• Integrating airborne remote sensing and field campaigns for ecology and Earth system science, 2020, Methods in Ecology and Evolution (11) - 11
• msocc: Fit and analyse computationally efficient multi‐scale occupancy models in R, 2020, Methods in Ecology and Evolution (11) - 9
• The use of Bayesian priors in Ecology: The good, the bad and the not great, 2020, Methods in Ecology and Evolution (11) - 8
• AMMonitor: Remote monitoring of biodiversity in an adaptive framework with R, 2020, Methods in Ecology and Evolution (11) - 7
• AMMonitor 2: Remote monitoring of biodiversity in an adaptive framework in R, 2020, Methods in Ecology and Evolution (11) - 7
• Dermal denticle assemblages in coral reef sediments correlate with conventional shark surveys, 2020, Methods in Ecology and Evolution (11) - 3
• Sampling and analysis frameworks for inference in ecology, 2020, Methods in Ecology and Evolution (11) - 10
• Cohesive framework for modeling plant cover class data, 2019, Methods in Ecology and Evolution (10) - 10
• A comparative analysis of common methods to identify waterbird hotspots, 2019, Methods in Ecology and Evolution (10) - 9
• The area under the precision‐recall curve as a performance metric for rare binary events, 2019, Methods in Ecology and Evolution (10) - 4
• Occupancy models for citizen-science data, 2019, Methods in Ecology and Evolution (10) - 1
• DNA mixtures for ecology, 2019, Methods in Ecology and Evolution
• Modelling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations, 2018, Methods in Ecology and Evolution (9) - 9
• Using partial aggregation in spatial capture recapture, 2018, Methods in Ecology and Evolution (9) - 8
• Animal movement models for migratory individuals and groups, 2018, Methods in Ecology and Evolution (9) - 7
• Two-species occupancy modeling accounting for species misidentification and nondetection, 2018, Methods in Ecology and Evolution (9) - 6
• Evaluation of acoustic telemetry grids for determining aquatic animal movement and survival, 2018, Methods in Ecology and Evolution (9) - 6
• Imperfect pathogen detection from non-invasive skin swabs biases disease inference, 2018, Methods in Ecology and Evolution (9) - 2
• Integrating continuous stocks and flows into state-and-transition simulation models of landscape change, 2018, Methods in Ecology and Evolution (9) - 4
• A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing, 2018, Methods in Ecology and Evolution (9) - 3
• Bias correction of bounded location errors in presence-only data, 2017, Methods in Ecology and Evolution (8) - 11
• Estimating occupancy and abundance using aerial images with imperfect detection, 2017, Methods in Ecology and Evolution (8) - 12
• Statistical design and analysis for plant cover studies with multiple sources of observation errors, 2017, Methods in Ecology and Evolution (8) - 12
• QFASAR: Quantitative fatty acid signature analysis with R, 2017, Methods in Ecology and Evolution (8) - 9
• Long-term video surveillance and automated analyses reveal arousal patterns in groups of hibernating bats, 2017, Methods in Ecology and Evolution (8) - 12
• Novel, continuous monitoring of fine‐scale movement using fixed‐position radiotelemetry arrays and random forest location fingerprinting, 2017, Methods in Ecology and Evolution (8) - 7
• A multistate dynamic site occupancy model for spatially aggregated sessile communities, 2017, Methods in Ecology and Evolution (8) - 6
• Do we need demographic data to forecast plant population dynamics?, 2017, Methods in Ecology and Evolution (8) - 5
• Integrated species distribution models: combining presence-background data and site-occupancy data with imperfect detection, 2017, Methods in Ecology and Evolution (8) -
• Designing occupancy studies when false-positive detections occur, 2016, Methods in Ecology and Evolution (7) - 12
• Critical considerations for the application of environmental DNA methods to detect aquatic species, 2016, Methods in Ecology and Evolution (7) - 11
• Uncertainty in biological monitoring: a framework for data collection and analysis to account for multiple sources of sampling bias, 2016, Methods in Ecology and Evolution (7) - 8
• State-and-transition simulation models: a framework for forecasting landscape change, 2016, Methods in Ecology and Evolution (7) - 11
• Immunoglobulin detection in wild birds: Effectiveness of three secondary anti-avian IgY antibodies in direct ELISAs in 41 avian species, 2016, Methods in Ecology and Evolution (7) - 10
• Estimating abundance in the presence of species uncertainty, 2016, Methods in Ecology and Evolution (7) - 9
• A functional model for characterizing long-distance movement behaviour, 2016, Methods in Ecology and Evolution (7) - 3
• CDMetaPOP: An individual-based, eco-evolutionary model for spatially explicit simulation of landscape demogenetics, 2016, Methods in Ecology and Evolution (8) - 1
• A quantitative framework for estimating risk of collision between marine mammals and boats, 2016, Methods in Ecology and Evolution (7) - 1
• Assessing the robustness of quantitative fatty acid signature analysis to assumption violations, 2016, Methods in Ecology and Evolution (7) - 1
• On the existence of maximum likelihood estimates for presence-only data, 2015, Methods in Ecology and Evolution (6) - 6
• Occupancy estimation for rare species using a spatially-adaptive sampling design, 2015, Methods in Ecology and Evolution (7) - 3
• When do we need more data? A primer on calculating the value of information for applied ecologists, 2015, Methods in Ecology and Evolution (6) - 10
• Accounting for multiple climate components when estimating climate change exposure and velocity, 2015, Methods in Ecology and Evolution (6) - 6
• Testing hypotheses on distribution shifts and changes in phenology of imperfectly detectable species, 2015, Methods in Ecology and Evolution (6) - 6
• Performance of species occurrence estimators when basic assumptions are not met: a test using field data where true occupancy status is known, 2015, Methods in Ecology and Evolution (6) - 5
• Modelling non-Euclidean movement and landscape connectivity in highly structured ecological networks, 2015, Methods in Ecology and Evolution (6) - 2
• Accounting for imperfect detection in Hill numbers for biodiversity studies, 2015, Methods in Ecology and Evolution (6) - 1
• Estimating true instead of apparent survival using spatial Cormack-Jolly-Seber models, 2014, Methods in Ecology and Evolution (5) - 12
• Mark-resight abundance estimation under incomplete identification of marked individuals, 2014, Methods in Ecology and Evolution (5) - 12
• Using mark-recapture distance sampling methods on line transect surveys, 2014, Methods in Ecology and Evolution (5) - 11
• Reply to Efford on ‘Integrating resource selection information with spatial capture-recapture’, 2014, Methods in Ecology and Evolution (5) - 7
• Multiseason occupancy models for correlated replicate surveys, 2014, Methods in Ecology and Evolution (5) - 6
• Hierarchical spatial capture-recapture models: Modeling population density from stratified populations, 2014, Methods in Ecology and Evolution (5) - 1
• Advances and applications of occupancy models, 2013, Methods in Ecology and Evolution (5) - 12
• Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS, 2013, Methods in Ecology and Evolution (4) - 6
• Integrating resource selection information with spatial capture--recapture, 2013, Methods in Ecology and Evolution (4) - 6
• Presence-only modeling using MAXENT: when can we trust the inferences?, 2013, Methods in Ecology and Evolution (4) - 3
• Representing the acquisition and use of energy by individuals in agent-based models of animal populations, 2013, Methods in Ecology and Evolution (4) - 2
• Program SPACECAP: software for estimating animal density using spatially explicit capture-recapture models, 2012, Methods in Ecology and Evolution (3) - 6
• A Gibbs sampler for Bayesian analysis of site-occupancy data, 2012, Methods in Ecology and Evolution (3) - 6
• A general theory of multimetric indices and their properties, 2012, Methods in Ecology and Evolution (3) - 4
• Moderating Argos location errors in animal tracking data, 2012, Methods in Ecology and Evolution (3) - 6
• A two-phase sampling design for increasing detections of rare species in occupancy surveys, 2012, Methods in Ecology and Evolution (3) - 4
• Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions, 2012, Methods in Ecology and Evolution (3) - 3
• On thinning of chains in MCMC, 2012, Methods in Ecology and Evolution (3) - 1
• Applying additive modeling and gradient boosting to assess the effects of watershed and reach characteristics on riverine assemblages, 2012, Methods in Ecology and Evolution (3) - 1
• Spatial capture-recapture models for search-encounter data, 2011, Methods in Ecology and Evolution (2) - 6
• Accounting for non-independent detection when estimating abundance of organisms with a Bayesian approach, 2011, Methods in Ecology and Evolution (2) - 6
• Assessing conservation relevance of organism-environment relations using predicted changes in response variables, 2010, Methods in Ecology and Evolution (1) - 4
• Unbiased survival estimates and evidence for skipped breeding opportunities in females, 2010, Methods in Ecology and Evolution (1) - 2