LOWSTAND_GEOG.SHP: Point Shapefile of Interpreted Lowstand Horizon Based on Seismic-Reflection Profiles Collected in Apalachicola Bay in 2006 from U.S. Geological Survey Cruise 06001 (Geographic, WGS84)

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Frequently-anticipated questions:

What does this data set describe?

Title:
LOWSTAND_GEOG.SHP: Point Shapefile of Interpreted Lowstand Horizon Based on Seismic-Reflection Profiles Collected in Apalachicola Bay in 2006 from U.S. Geological Survey Cruise 06001 (Geographic, WGS84)
Abstract:
Apalachicola Bay and St. George Sound contain the largest oyster fishery in Florida, and the growth and distribution of the numerous oyster reefs here are the combined product of modern estuarine conditions and the late Holocene evolution of the bay. A suite of geophysical data and cores were collected during a cooperative study by the U.S. Geological Survey, the National Oceanic and Atmospheric Administration Coastal Services Center, and the Apalachicola National Estuarine Research Reserve to refine the geology of the bay floor as well as the bay's Holocene stratigraphy. Sidescan-sonar imagery, bathymetry, high-resolution seismic profiles, and cores show that oyster reefs occupy the crests of sandy shoals that range from 1 to 7 kilometers in length, while most of the remainder of the bay floor is covered by mud. The sandy shoals are the surficial expression of broader sand deposits associated with deltas that advanced southward into the bay between 6,400 and 4,400 years before present. The seismic and core data indicate that the extent of oyster reefs was greatest between 2,400 and 1,200 years before present and has decreased since then due to the continued input of mud to the bay by the Apalachicola River. The association of oyster reefs with the middle to late Holocene sandy delta deposits indicates that the present distribution of oyster beds is controlled in part by the geologic evolution of the estuary. For more information on the surveys involved in this project, see <http://woodshole.er.usgs.gov/operations/ia/public_ds_info.php?fa=2005-001-FA> and <http://woodshole.er.usgs.gov/operations/ia/public_ds_info.php?fa=2006-001-FA>.
  1. How should this data set be cited?

    Twichell, David C. , and Cross, VeeAnn A. , 2012, LOWSTAND_GEOG.SHP: Point Shapefile of Interpreted Lowstand Horizon Based on Seismic-Reflection Profiles Collected in Apalachicola Bay in 2006 from U.S. Geological Survey Cruise 06001 (Geographic, WGS84): Open-File Report 2012-1003, U.S. Geological Survey, Coastal and Marine Geology Program, Woods Hole Coastal and Marine Science Center, Woods Hole, MA.

    Online Links:

    This is part of the following larger work.

    Cross, V.A., Twichell, D.C., Foster, D.S., and O'Brien, T.F., 2012, Apalachicola Bay Interpreted Seismic Horizons and Updated IRIS Chirp Seismic-Reflection Data: Open-File Report 2012-1003, U.S. Geological Survey, Coastal and Marine Geology Program, Woods Hole Coastal and Marine Science Center, Woods Hole, MA.

    Online Links:

  2. What geographic area does the data set cover?

    West_Bounding_Coordinate: -85.047962
    East_Bounding_Coordinate: -84.877494
    North_Bounding_Coordinate: 29.720067
    South_Bounding_Coordinate: 29.613828

  3. What does it look like?

  4. Does the data set describe conditions during a particular time period?

    Beginning_Date: 31-May-2006
    Ending_Date: 27-Jun-2006
    Currentness_Reference: ground condition

  5. What is the general form of this data set?

    Geospatial_Data_Presentation_Form: vector digital data

  6. How does the data set represent geographic features?

    1. How are geographic features stored in the data set?

      This is a Vector data set. It contains the following vector data types (SDTS terminology):

      • Entity point (41067)

    2. What coordinate system is used to represent geographic features?

      Horizontal positions are specified in geographic coordinates, that is, latitude and longitude. Latitudes are given to the nearest 0.000001. Longitudes are given to the nearest 0.000001. Latitude and longitude values are specified in Decimal degrees.

      The horizontal datum used is D_WGS_1984.
      The ellipsoid used is WGS_1984.
      The semi-major axis of the ellipsoid used is 6378137.000000.
      The flattening of the ellipsoid used is 1/298.257224.

      Vertical_Coordinate_System_Definition:
      Depth_System_Definition:
      Depth_Datum_Name: Local surface
      Depth_Resolution: 0.1
      Depth_Distance_Units: meters
      Depth_Encoding_Method: Attribute values

  7. How does the data set describe geographic features?

    lowstand_geog
    ESRI point shapefile (Source: ESRI)

    FID
    Internal feature number. (Source: ESRI)

    Sequential unique whole numbers that are automatically generated.

    Shape
    Feature geometry. (Source: ESRI)

    Coordinates defining the features.

    easting
    Easting coordinate of the point in meters, UTM Zone 16, WGS84. (Source: U.S. Geological Survey)

    Range of values
    Minimum:688895.76
    Maximum:705393.24
    Units:meters

    northing
    Northing coordinate of the point in meters, UTM Zone 16, WGS84. (Source: U.S. Geological Survey)

    Range of values
    Minimum:3277672.6
    Maximum:3289546
    Units:meters

    ms
    Depth to the seafloor horizon in milliseconds two-way travel time. (Source: Software calculated.)

    Range of values
    Minimum:4.76
    Maximum:23.4
    Units:milliseconds

    line
    Line name used in Landmark SeisWorks as the unique identifier for each seismic line. (Source: Data processor.)

    Character set.

    Entity_and_Attribute_Overview:
    The two-way travel time incorporates travel through water and sediment which have different speed of sound values.

Who produced the data set?

  1. Who are the originators of the data set? (may include formal authors, digital compilers, and editors)

  2. Who also contributed to the data set?

  3. To whom should users address questions about the data?

Why was the data set created?

This point shapefile contains the interpretation of the depth to the lowstand surface (in two-way travel time) based on seismic-reflection profiles collected in 2006 in Apalachicola Bay.

How was the data set created?

  1. From what previous works were the data drawn?

    (source 1 of 1)
    Source_Contribution:
    The seismic data used for the interpretation comes from two different seismic systems. The bulk of the data are from the EdgeTech FSSB 424 system pole mounted on the R/V Rafael. These data were logged in SEG-Y format using SBLogger. This system had a 1/4 second fire rate. The remainder of the data, in the shallower areas, were acquired with the USGS IRIS system. IRIS is a remotely operated vehicle that has an EdgeTech FSSB 424 chirp sub-bottom profiling system mounted to it. The seismic data were recorded by JSTAR, a software package developed by EdgeTech. This system had a much faster fire rate, almost 15 times per second. The EdgeTech FSSB 424 is a chirp sub-bottom profiler that operates within a 4-24kHz frequency range. The IRIS vehicle is navigated using Real-Time Kinematic (RTK) GPS. The antenna is mounted directly on the platform to minimize navigational error. The R/V Rafael was also navigated with an RTK GPS system with the navigation antenna approximately 1.5 meters forward of the seismic transducer. This offset was not accounted for.

  2. How were the data generated, processed, and modified?

    Date: 2006 (process 1 of 9)
    Two different seismic systems acquired data in Apalachicola Bay in 2006. One system was the EdgeTech FSSB 424 (4-24kHz) aboard the R/V Rafael. These data were acquired as SEG-Y files using SBLogger. The second seismic system was also an EdgeTech FSSB 424 chirp system mounted on the USGS autonomous vehicle IRIS. These data were acquired with JSTAR in JSF format and converted to SEG-Y format using a C-program written by Tom O'Brien (USGS, Woods Hole). These SEG-Y files were then converted from IEEE format to IBM floating point using SIOSEIS, and the shots were renumbered starting at one. With initial preparation work on the seismic data complete, these data and navigation needed to be loaded into Landmark SeisWorks software for interpretation. In order to load the seismic data and navigation into Landmark SeisWorks software the navigation needed to be extracted from the header of the seismic data. An AWK script was used to extract the navigation from the seismic data headers and export in UTM, Zone 16 eastings and northings, rounded to the nearest meter.

    Person who carried out this activity:

    U.S. Geological Survey
    Woods Hole Coastal and Marine Science Center
    Woods Hole, MA 02543

    508-548-8700 (voice)
    508-457-2251 (FAX)

    Date: 2007 (process 2 of 9)
    Once the navigation is extracted from the seismic data, this navigation has to be loaded into the interpretation software - Landmark SeisWorks version R2003. The navigation is loaded using Data - Management - Seismic Data Manager. A new survey is created for each acquisition system (06001 for the Rafael data, asv06 for the IRIS data). Then, Data - Import - Seismic Data Loader and point to the navigation text file. When loading the navigation, use a decimation of 0, use first shot point if duplicates are found, and overwrite data in target project if necessary. A decimation of zero was used because the IRIS navigation had already been decimated to take every 5th record from the complete navigation extracted from the headers of the IRIS seismics. The Rafael data did not need decimation. The Rafael data had a 1/4 second fire rate while the IRIS data fired at approximately 15 shots per second. Once the navigation is loaded and verified, then the actual seismic data can be loaded. To do this, use PostStack Data Loader. There was a small issue in working with seismic data in SeisWorks where it's better to have all the seismic profiles at the same sample rate. It's a display issue in the interpretation phase where opening a profile in a window with a different sample rate than the previously loaded profile doesn't always refresh the window properly. The result is an incorrect interpretation - the interpreted line falls in the wrong spot vertically. The seismic data were resampled to the same sample rate to eliminate this problem. The Rafael acquired data at two different sample rates: 40 microseconds and 80 microseconds. The Rafael seismics were all resampled to 40 microseconds in the PostStack data loader. Additionally, the lines had an automatic 8-bit scaling applied to each profile when loaded. The IRIS seismic lines were acquired with two sample rates - 23 microseconds and 46 microseconds. All of the lines were resampled to a 40 microsecond sampling interval in PostStack data loader and had an automatic 8-bit scaling applied to each profile when loaded. With the seismic data now loaded, the project has to be modified so these changes are reflected in the surveys and the data can be interpreted.

    Person who carried out this activity:

    VeeAnn A. Cross
    U.S. Geological Survey
    Marine Geologist
    Woods Hole Coastal and Marine Science Center
    Woods Hole, MA 02543-1598

    (508) 548-8700 x2251 (voice)
    (508) 457-2310 (FAX)
    vatnipp@usgs.gov

    Date: 2007 (process 3 of 9)
    The lowstand horizon was created in SeisWorks, and the lowstand surface was digitized from each seismic reflection profile where present. The surface is identified on seismic profiles as an irregular reflector that separates the underlying acoustically massive material from overlying acoustic units characterized by parallel, continuous closely spaced reflectors.

    Person who carried out this activity:

    David C. Twichell
    U.S. Geological Survey
    Oceanographer
    Woods Hole Coastal and Marine Science Center
    Woods Hole, MA 02543-1598

    (508) 548-8700 x2266 (voice)
    (508) 457-2310 (FAX)
    dtwichell@usgs.gov

    Date: 2008 (process 4 of 9)
    Once the interpretation was complete, the horizon was exported as a text file with the following information in separate columns for each point: line name, easting, northing, and depth to the horizon in milliseconds. This process step and all subsequent process steps were overseen by the same person - VeeAnn A. Cross.

    Person who carried out this activity:

    VeeAnn A. Cross
    U.S. Geological Survey
    Marine Geologist
    Woods Hole Coastal and Marine Science Center
    Woods Hole, MA 02543-1598

    (508) 548-8700 x2251 (voice)
    (508) 457-2310 (FAX)
    vatnipp@usgs.gov

    Date: 2008 (process 5 of 9)
    A header line is added to the exported text file, and converted from a tab-delimited file to a comma-delimited file.

    Date: 2008 (process 6 of 9)
    ArcMap 9.2 was used to load this text file as an event theme using Tools - Add XY data. The projection is defined on input as UTM, Zone 16, WGS84.

    Date: 2008 (process 7 of 9)
    This event theme is converted to a shapefile by right mouse click - Data - Export Data and generating the output shapefile low021508csv.shp. This shapefile represents the depth to the lowstand horizon in milliseconds (two-way travel time). The travel-time incorporates travel through water and sediment which have different speed of sound values.

    Date: 2008 (process 8 of 9)
    Any points falling outside Apalachicola Bay were deleted.

    Date: 2010 (process 9 of 9)
    The original shapefile in UTM, Zone 16, WGS84 was projected to Geographic, WGS84 using ArcMap 9.2 - ArcToolbox - Data Management Tools - Projections and Transformations - Feature - Project. No datum transformation was necessary. The output shapefile is lowstand_geog.shp.

  3. What similar or related data should the user be aware of?

    Twichell, D.C., Andrews, B.D., Edmiston, H.L., and Stevenson, W.R., 2007, Geophysical mapping of oyster habitats in a shallow estuary; Apalachicola Bay, Florida: Open-File Report 2006-1381, U.S. Geological Survey, Coastal and Marine Geology Program, Woods Hole Science Center, Woods Hole, MA.

    Online Links:

    Twichell, D.C., Pendleton, E.A., Poore, R.Z., Osterman, L.E., and Kelso, K.W., 2009, Vibracore, radiocarbon, microfossil, and grain-size data from Apalachicola Bay, Florida: Open-File Report 2009-1031, U.S. Geological Survey, Coastal and Marine Geology Program, Woods Hole Coastal and Marine Science Center, Woods Hole, MA.

    Online Links:

    Bergeron, E., Worley, C.R., and O'Brien, T.F., 2007, Progress in the development of shallow-water mapping systems: using an autonomous surface vehicle for shallow-water geophysical studies: Sea Technology v. 48, no. 6, p. 10-15, Compass Publications, Inc., Arlington, VA.

How reliable are the data; what problems remain in the data set?

  1. How well have the observations been checked?

  2. How accurate are the geographic locations?

    The R/V Rafael acquired data recording navigation using a Real Time Kinematic (RTK) GPS at a one second interval. The GPS antenna was mounted over the bathymetric sonar. The seismic pole mount system was on the starboard side and approximately 1.5 meters aft of the bathymetry system. No offset was added to the navigation for the seismic data. For seismic data collected with the IRIS system, an RTK GPS system was also used. The GPS antenna for IRIS was mounted directly over the seismic transducer. This system can provide positions to within 0.1 meters. However, due to some errors with the acquisition software, this accuracy is reduced. The accuracy is approximately 2 m given the constraints of the acquisition system.

  3. How accurate are the heights or depths?

    For the Rafael seismic system, the transducers were located approximately 1 meter below the water surface. This offset was not adjusted for. For the IRIS system, the transducers are barely below the water surface, less than half a meter. This depth is not adjusted for.

  4. Where are the gaps in the data? What is missing?

    All useable seismic-reflection profiles collected in 2006 within Apalachicola Bay were used in the interpretation.

  5. How consistent are the relationships among the observations, including topology?

    All data were handled in the same manner.

How can someone get a copy of the data set?

Are there legal restrictions on access or use of the data?

Access_Constraints: None.
Use_Constraints:
The public domain data from the U.S. Government are freely redistributable with proper metadata and source attribution. Please recognize the U.S. Geological Survey as the originator of the dataset.

  1. Who distributes the data set? (Distributor 1 of 1)

    VeeAnn A. Cross
    U.S. Geological Survey
    Marine Geologist
    Woods Hole Coastal and Marine Science Center
    Woods Hole, MA 02543-1598

    (508) 548-8700 x2251 (voice)
    (508) 457-2310 (FAX)
    vatnipp@usgs.gov

  2. What's the catalog number I need to order this data set?

    Downloadable Data

  3. What legal disclaimers am I supposed to read?

    Neither the U.S. government, the Department of the Interior, nor the USGS, nor any of their employees, contractors, or subcontractors, make any warranty, express or implied, nor assume any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, nor represent that its use would not infringe on privately owned rights. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by the USGS in the use of these data or related materials. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

  4. How can I download or order the data?

  5. What hardware or software do I need in order to use the data set?

    This WinZip file contains data available in ESRI point shapefile format. The user must have software capable of uncompressing the WinZip file and reading/displaying the shapefile.

Who wrote the metadata?

Dates:
Last modified: 12-Apr-2012
Metadata author:
VeeAnn A. Cross
U.S. Geological Survey
Marine Geologist
Woods Hole Coastal and Marine Science Center
Woods Hole, MA 02543-1598

(508) 548-8700 x2251 (voice)
(508) 457-2310 (FAX)
vatnipp@usgs.gov

Metadata standard:
FGDC Content Standards for Digital Geospatial Metadata (FGDC-STD-001-1998)
Metadata extensions used:

Generated by mp version 2.9.6 on Wed Apr 18 17:10:54 2012