A Late Miocene non-marine stratigraphic sequence composed of limestone, opal-CT-bearing limestone, porcelanite, marlstone, diatomaceous marlstone, dolomite, and tuffite crops out on eastern Samos Island. This lacustrine sequence is subdivided into the Hora Beds and the underlying Pythagorion Formation. The Hora Beds is overlain by the clastic Mytilinii series which contains Turolian (Late Miocene) mammalian fossils. The lacustrine sequence contains volcanic glass and the silica polymorphs opal-A, opal-CT, and quartz. Volcanic glass predominantly occurs in tuffaceous rocks from the lower and upper parts of the lacustrine sequence. Opal-A (diatom frustules) is confined to layers in the upper part of the Hora Beds. Beds rich in opal-CT underlie those containing opal-A. The occurrence of opal-CT is extensive, encompassing the lower Hora Beds and the sedimentary rocks and tuffs of the Pythagorion Formation. A transition zone between the opal-A and opal-CT zones is identified by X-ray diffraction patterns that are intermediate between those of opal-CT and opal-A, perhaps due to a mixture of the two polymorphs. Diagenesis was not advanced enough for opal-CT to transform to quartz or for volcanic glass to transform to opal-C. Based on geochemical and mineralogical data, we suggest that the rate of diagenetic transformation of opal-A to opal-CT was mainly controlled by the chemistry of pore fluids. Pore fluids were characterized by high salinity, moderately high alkalinity, and high magnesium ion activity. These pore fluid characteristics are indicated by the presence of evaporitic salts (halite, sylvite, niter), high boron content in biogenic silica, and by dolomite in both the opal-A and opal-CT-bearing beds. The absence of authigenic K-feldspar, borosilicates, and zeolites also support these pore fluid characteristics. Additional factors that influenced the rate of silica diagenesis were host rock lithology and the relatively high heat flow in the Aegean region from Miocene to Holocene. ?? 1989.