Sedimentological, palynological, and magnetic susceptibility data provide paleoenvironmental and paleoclimatic information from a 989 ft (301 m) core of sediments from the upper Glenns Ferry and Bruneau Formations from near the town of Bruneau in Owyhee County, Idaho. Chronology is based on stratigraphic position, paleomagnetism, and biostratigraphic data, which collectively suggest a late Gauss Normal-Polarity Chron age for the Glenns Ferry sediments and a middle Matuyama Reversed-Polarity Chron age for the Bruneau sediments. A deep lake was present on the western Snake River Plain during the portions of the time represented by the Glenns Ferry Formation, and the mudstones of the lower half of the core were apparently deposited in this lake. The terminal regression of the Glenns Ferry lake may be represented in the Bruneau core by sandy mudstones and sands that overlie the deep-water mudstones. A cobble layer present in the core between the Glenns Ferry lake beds and those of the overlying Bruneau Formation may indicate through-flow by the ancestral Snake River.

Palynological data from the Glenns Ferry sediments in the Bruneau core reveal a pollen flora similar to the modern regional pollen flora, with very rare occurrences of now-extirpated taxa common earlier in the Tertiary. Palynological data from the Pliocene portion of this core indicate conditions more moist than today, with cooler summers and perhaps warmer winters. Quasi-periodic fluctuations in coniferous pollen (primarily Pinus) versus arid steppe taxa (primarily Chenopodiaceae/Amar-anthus) indicate significant variations in moisture through the lower two-thirds of the Glenns Ferry portion of the core. Shorter wave-length fluctuations in magnetic susceptibility and (inversely) Artemisia may reflect variations in temperature or other unidentified climatic variables. The pollen spectra from the Bruneau Formation sediments in the Bruneau core are dominated by Artemisia and resemble those of the Wisconsinan glacial period on the Snake River Plain, and hence indicate cold and dry conditions during some portion of the early Pleistocene.

The deep-water Glenns Ferry lacustrine episode appears to date between approximately 3.5 to 3.3 and 2.5 Ma, and thus occurred during the middle Pliocene period of warmer-than-modern global temperatures. Similar sustained wetter-than-present conditions occurred in the same age range at sites across the western U.S.A. from southern California and Arizona to northern California and Idaho. This moist period was apparently followed by an interval of regional arid conditions that persisted for several hundred thousand years.