The aim of this study is to examine the annual regime of channel scour and fill by monitoring bed-elevation changes in a reach of Squamish River in southwestern British Columbia, Canada. Sonar surveys of 13 river cross-sections in a sandy gravel-bed single-channel study reach were repeated biweekly over a full hydrologic year (1995/6). The survey results show that bedload movement occurs as waves or pulses forming bedwaves that appear to maintain an overall coherence with movement downstream. These bedwaves propagate downstream by a mode here termed pulse scour and pulse fill, a process distinguished from the conventional mode of scour and fill commonly associated with flood events (here termed local scour and local fill). Bedwave celerity was estimated to be about 15.5 m d-1 corresponding to a bedwave residence time in the study reach of almost one hydrologic year. The total amount of local bed-elevation change ranged between 0.22 m and 2.41 m during the period of study. Analysis of the bed-elevation and flow data reveals that, because of the bedware phenomenon, there is no simple relation between the mean bed-elevation and discharge nor any strong linear correlation among cross-sectional behaviour. The bed-elevation data also suggest that complex changes to the bed within a cross-section are masked when the bed is viewed in one dimension, although no definitive trends in bed behaviour were found in the two-dimensional analysis. Although a weak seasonal effect is evident in this study, the bed-elevation regime is dominated by sediment supply-driven fluctuations in bedload transport occurring at timescales shorter than the seasonal fluctuation in discharge. The study also indicates that bed-elevation monitoring on Squamish River, and others like it, for purposes of detecting and measuring aggradation/degradation must take into account very considerable and normal channel-bed variability operating at timescales from hours to months. Copyright (C) 2000 John Wiley and Sons, Ltd.