Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes

Applied and Environmental Microbiology
By: , and 

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Abstract

Methane (CH4) flux to the atmosphere is mitigated via microbial CH4 oxidation in sediments and water. As arctic temperatures increase, understanding the effects of temperature on the activity and identity of methanotrophs in arctic lake sediments is important to predicting future CH4 emissions. We used DNA-based stable-isotope probing (SIP), quantitative PCR (Q-PCR), and pyrosequencing analyses to identify and characterize methanotrophic communities active at a range of temperatures (4°C, 10°C, and 21°C) in sediments (to a depth of 25 cm) sampled from Lake Qalluuraq on the North Slope of Alaska. CH4 oxidation activity was measured in microcosm incubations containing sediments at all temperatures, with the highest CH4 oxidation potential of 37.5 μmol g−1 day−1 in the uppermost (depth, 0 to 1 cm) sediment at 21°C after 2 to 5 days of incubation. Q-PCR of pmoA and of the 16S rRNA genes of type I and type II methanotrophs, and pyrosequencing of 16S rRNA genes in 13C-labeled DNA obtained by SIP demonstrated that the type I methanotrophs MethylobacterMethylomonas, and Methylosoma dominated carbon acquisition from CH4 in the sediments. The identity and relative abundance of active methanotrophs differed with the incubation temperature. Methylotrophs were also abundant in the microbial community that derived carbon from CH4, especially in the deeper sediments (depth, 15 to 20 cm) at low temperatures (4°C and 10°C), and showed a good linear relationship (R = 0.82) with the relative abundances of methanotrophs in pyrosequencing reads. This study describes for the first time how methanotrophic communities in arctic lake sediments respond to temperature variations.

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Publication type Article
Publication Subtype Journal Article
Title Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes
Series title Applied and Environmental Microbiology
DOI 10.1128/AEM.00853-12
Volume 78
Issue 13
Year Published 2012
Language English
Publisher American Society of Microbiology
Contributing office(s) Woods Hole Coastal and Marine Science Center
Description 9 p.
First page 4715
Last page 4723
Country United States
State Alaska
Other Geospatial Brooks Range
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