Within the south-western Mojave Desert, the Joshua Basin Water District is considering applying imported water into infiltration ponds in the Joshua Tree groundwater sub-basin in an attempt to artificially recharge the underlying aquifer. Scarce subsurface hydrogeological data are available near the proposed recharge site; therefore, time-domain electromagnetic (TDEM) data were collected and analysed to characterize the subsurface. TDEM soundings were acquired to estimate the depth to water on either side of the Pinto Mountain Fault, a major east-west trending strike-slip fault that transects the proposed recharge site. While TDEM is a standard technique for groundwater investigations, special care must be taken when acquiring and interpreting TDEM data in a twodimensional (2D) faulted environment. A subset of the TDEM data consistent with a layered-earth interpretation was identified through a combination of three-dimensional (3D) forward modelling and diffusion time-distance estimates. Inverse modelling indicates an offset in water table elevation of nearly 40 m across the fault. These findings imply that the fault acts as a low-permeability barrier to groundwater flow in the vicinity of the proposed recharge site. Existing production wells on the south side of the fault, together with a thick unsaturated zone and permeable near-surface deposits, suggest the southern half of the study area is suitable for artificial recharge. These results illustrate the effectiveness of targeted TDEM in support of hydrological studies in a heavily faulted desert environment where data are scarce and the cost of obtaining these data by conventional drilling techniques is prohibitive.