Historically, Cisco Coregonus artedi and Lake Whitefish Coregonus clupeaformis were abundant throughout the Laurentian Great Lakes, but overharvest, habitat degradation, and interactions with exotic species caused most populations to collapse by the mid-1900s. Strict commercial fishery regulations and improved environmental and ecological conditions allowed Cisco to partially recover only in Lake Superior, whereas Lake Whitefish recovered in all the upper Great Lakes (Superior, Michigan, and Huron). The differential responses of Cisco and Lake Whitefish to improved environmental and ecological conditions in lakes Michigan and Huron have led to questions about potential negative interactions between these species. To provide context for fishery managers, we tested for positive and negative correlations between historical (1929–1970) Cisco and Lake Whitefish commercial gill net catch per effort (CPE; kg/km of net) at a variety of spatial scales in Michigan waters of the upper Great Lakes. The three best-fit spatial models—LAKEWIDE, REGIONAL 10, and SIMPLE—all had similar levels of support (scaled second-order Akaike Information Criterion < 3.0), and we used these models to determine whether there was a significant correlation between Cisco and Lake Whitefish CPE (positive and negative). There was either no correlation between Cisco and Lake Whitefish CPE or a positive correlation for most (12 of 13) pairwise (Cisco–Lake Whitefish) comparisons. We identified no strong positive or negative correlations in the lakewide (LAKEWIDE) or reduced (SIMPLE) models. In the regional model (REGIONAL 10), we identified strong and positive correlations between Cisco and Lake Whitefish CPE in two regions (ρ = 0.59–0.71) and a weak negative correlation in one region (ρ = −0.45). Collectively, our findings suggest that Cisco and Lake Whitefish CPE were largely independent of each other; thus, these species likely did not interact to the detriment of one another in Michigan waters of the upper Great Lakes during 1929–1970.