The Milligen Formation at and near its type locality in the Wood River area is considerably older than and unrelated to rocks of Early Mississippian age called Milligen Formation in the Lost River Range and other ranges of east-central Idaho. Conodont faunas were found in limestones of a thin upper member of the sparsely fossiliferous marine Milligen Formation in its principal reference section at Milligen Gulch, at Fisher Canyon, and near Bellevue, Idaho. The faunas include indigenous conodonts here assigned to the early Late Devonian (early Frasnian) Lower and Middle Polygnathus asymmetricus Zones, and reworked conodonts derived from several Middle and Early Devonian conodont zones. An underlying much thicker argillite member of the Milligen contains fewer limestones, but a thin encrinite interbed near the middle of the member yielded early Middle Devonian (Eifelian) conodonts. This lower member probably represents most of Middle and Early Devonian time. Although its base is nowhere exposed in the Wood River area, the Milligen is inferred to have been deposited on the Silurian Trail Creek Formation, which crops out just to the east in the Pioneer Mountains. The age of the Milligen is therefore wholly Devonian and the highest fossiliferous beds are no younger than early Late Devonian. Reworked Middle and Early Devonian conodonts in limestone turbidites of the upper member of the Milligen Formation are identical to conodonts found in shelf (miogeosynclinal) carbonate rocks farther east. A postulated eastern source for the turbidites is supported by new data on the distribution, thickness, and tectonic facies of Devonian rocks that suggest the presence of a Late Devonian ridge on the continental shelf east of the Milligen depositional area. The Milligen Formation was intensely folded and was emergent during most of the Mississippian time when it formed part of the Antler Highlands, which shed flysch sediments eastward into the Copper basin. The Wood River Formation of Pennsylvanian and Permian age was then deposited over a subdued topography on the Milligen Formation. The Hailey Conglomerate Member at the base of the Wood River filled many irregularities in the surface. This depositional contact later was largely destroyed and the contact between the Milligen and Wood River is now a regional thrust fault at most places.