This chapter examines the shifting patterns in Chesapeake SAV community structure and the potential environmental variables that explain variation in species composition patterns at both long and short time periods. Bay-wide species occurrence data sets are summarized. These data show that twenty-seven or more species of SAV are found within the tidal Chesapeake Bay. Seventeen of these are common, and four of those are non-native. The distributions of these SAV species are largely controlled by salinity, resulting in species associations along salinity gradients. There is higher species richness in low salinity SAV communities compared to medium and high salinity areas, but some of the species have wide salinity tolerances and are found in more than one community type. Most low salinity SAV species have expanded their distributions within the Bay, whereas the distributions of medium and high salinity species have either not changed or decreased. Two non-native species (Hydrilla verticillata, Najas minor) have increased their distributions, while the distributions of two nonnative species (Myriophyllum spicatum, Potomogeton crispus) have not been observed to spread. Factors other than salinity that affect SAV community structure include water quality conditions, water movement, sediment quality, temperature, disease, water fowl herbivory, competitive interactions, propagule availability and shading from the invasive floating aquatic vegetation, Trapa natans. Historic declines in SAV abundances and diversity have largely been linked to anthropogenic impacts, although disease and storms have also contributed to episodic alterations to SAV communities.