Baseline information about declining North American shorebird populations is essential to determine the effects of global warming at low-lying coastal areas of the Arctic and subarctic, where numerous taxa breed, and to assess population recovery throughout their range. We estimated population sizes on the Yukon-Kuskokwim Delta in western Alaska on the eastern edge of the Bering Sea. We conducted ground-based surveys during 2015 and 2016 at 589 randomly selected plots from an area of 35,769 km². We used stratified random sampling in 8 physiographic strata and corrected population estimates using detection ratios derived from double sampling on a subset of plots. We detected 11,110 breeding individuals of 21 taxa. Western Sandpiper (Calidris mauri), Red-necked Phalarope (Phalaropus lobatus), Dunlin (subspecies C. alpina pacifica), and Wilson’s Snipe (Gallinago delicata) were the most abundant taxa. We estimated that ~6.9 million individual shorebirds were breeding on the entire Yukon-Kuskokwim Delta in 2015 and 2016. Our surveys of this region provided robust population estimates (CVs ≤ 0.35) for 14 species. Our results indicate that the Yukon-Kuskokwim Delta supports a large proportion of North America’s breeding populations of the Pacific Golden-Plover (Pluvialis fulva), the western population of a Whimbrel subspecies (Numenius phaeopus hudsonicus), a Bar-tailed Godwit subspecies (Limosa lapponica baueri), Black Turnstone (Arenaria melanocephala), a Dunlin subspecies (Calidris alpina pacifica), and Western Sandpiper. Our study highlights the importance to breeding shorebirds of this relatively pristine but climatically sensitive deltaic system. Estuaries and deltaic systems worldwide are rapidly being degraded by anthropogenic activities. Our population estimates can be used to refine prior North American population estimates, determine effects of global warming, and evaluate conservation success by measuring population change over time.