The last National Seismic Hazard Model (NSHM) for Puerto Rico and the U.S. Virgin Islands (PRVI) was published in 2003. In advance of the 2025 PRVI NSHM update, we created three geologic input databases to summarize new onshore and offshore fault source information in the northern Caribbean region between 62°–70° W and 16°–21° N. These databases, of fault sections, fault‐zone polygons, and geologic estimates of fault activity (fault‐slip rate and earthquake recurrence intervals) at specific sites, document updates to fault parameters used in prior seismic hazard models in PRVI. Fault sources were reviewed from published studies since 2003, which document substantial changes to the understanding of fault location, geometry, or activity. New fault section sources were added for features that meet the criteria of (1) length ≥7 km, (2) unequivocal evidence of recurrent tectonic Quaternary activity, and (3) documentation that is publicly available in a peer‐reviewed source. In addition, we revised several broad areal sources, such as the Mona and Anegada extensional zones. The 2003 model included three fault sections and two fault‐zone polygons (areal sources). These databases include 35 fault sections, 6 fault‐zone polygons, and 51 earthquake geology sites. To characterize fault activity rates, slip‐rate bins were assigned based on landscape expression and paleoseismic trench observations for faults without published slip‐rate sites. Additional fault sources were evaluated but not included in these databases due to a lack of published information about fault location, geometry, or recurrent Quaternary activity. The PRVI NSHM 2025 geologic input databases describe crustal faulting; the geometries and coupling of Puerto Rico subduction zone and Muertos Trough models are considered in a separate database. Updates to the fault sections, fault‐zone polygons, and earthquake geology databases can help inform the location and recurrence rate of damaging earthquakes in the PRVI NSHM implementation.