Salt marsh resilience to sea-level rise largely depends on the balance of sediment exchanges with surrounding bays. In this study, we investigate mechanisms that determine residual sediment fluxes using continuous measurements of bay-marsh sediment exchange conducted in a tidal creek spanning 13 months (753 tidal cycles) in an intertidal marsh recently subsidized with sediment via thin-layer placement. The maximum water level in each tidal cycle varied over seasonal and fortnightly timescales and was driven by a combination of the seasonal cycle in mean sea level (maximum in September, minimum in January) and the fortnightly spring-neap cycle. Residual water fluxes tended to be ebb-directed during overbank tides, possibly due to water crossing creekshed boundaries in the intertidal zone when water levels were sufficiently high. Sediment concentrations on the ebb of overbank tides exceeded those of their corresponding floods, but only for tidal cycles in which water temperatures exceeded 14°C. The interaction of these dynamics resulted in over 90% of the net sediment export from the creek occurring during overbank tides during warmer months—conditions met in 30% of the observed tidal cycles. These findings exemplify the importance of accounting for seasonality in sediment fluxes when assessing sediment budgets of salt marshes and illustrate how sediment budgets assessed with shorter duration datasets may exhibit seasonal bias. Additionally, they suggest that sediment retention for thin-layer sediment placement projects may be high over the course of the first year after sediment subsidies are deployed.