The warm deserts of North America are characterized by diverse environments that include the transition zone between tropical and temperate regions on the continent. This vast region includes the Sonoran and Chihuahuan deserts, which have different precipitation regimes and are composed of different floras and faunas, separated by the Cochise Filter Barrier. Inhabiting these deserts are 7 mud turtles (representing 4 separate clades within the genus Kinosternon), and we compared their basic ecology, life history, and estivation time to test for variation between deserts. We used phylogenetic comparative methods to correlate the life history traits with environmental variables (temperature and precipitation) to test for variation between deserts. Life history strategies (clutch size, egg size, and reproductive phenology) of mud turtles were similar across both deserts, with negative correlations of clutch size and age of maturity with both aridity and temperature variables. Maximum estivation time was correlated with the seasonality of each included locality. Overall, life history strategies were quite similar, with small local specializations to avoid high temperatures and periodic lack of water. From a population ecology perspective, populations showed varied sex ratios biased toward males or females, along with different population structure among populations and species. However, most published studies lacked data for hatchlings. Phylogenetic signal is high in traits related to body size, including sexual size dimorphism. Overall, mud turtles from the southwest deserts are adapted to regional seasonality and precipitation regimes, with minor adjustments to fit local conditions.