Many estuaries worldwide face increasing sediment loading caused by catchment land use change and intensification, creating subsequent adverse effects on estuarine ecosystems. Extreme weather events can disproportionately alter sediment pathways and loading. Although storm-driven sediment exchange has been widely examined at open coasts and inlets, key transport mechanisms within constricted, sheltered estuaries remain understudied.

This study presents an observational dataset capturing the impact of a 99th percentile water-level event (based on 20 years of records) on sediment transport pathways in a sheltered, barrier-enclosed estuary. This event, driven by a 3-day storm surge (>0.5 m) combined with a spring tide, was recorded during a 3-week field campaign.

Sediment transport pathways and riverine contributions were analysed, and observations revealed substantial changes in suspended sediment concentrations increasing from 18 mg/l to 70 mg/l during the event. The elevated water levels and resulting pressure gradient at the constricted study site entrance caused by the storm surge increased local flood dominance. Combined with higher flow velocities and resuspension, the storm led to a sixfold increase in sediment import at the estuary entrance and a 600-fold increase in sediment flux to the upper estuary.

The decoupling of peak suspended sediment concentrations from streamflow indicates that the resuspension of estuarine legacy sediment, rather than catchment inputs, dominated the system's response.

These findings challenge assumptions about estuarine sediment budgets and emphasise that incorporating high water-level surge events into models can enhance the prediction of long-term estuarine evolution. Given projected increases in storm frequency under climate change, understanding these episodic but highly consequential sediment pulses can support the assessment of wetland resilience and inform estuarine management strategies.