Early detection and monitoring are critically important for effective management of invasive species in the Laurentian Great Lakes. Specifically, Lake Erie is at high-risk for aquatic invasive species introductions due to many factors such as shoreline development, warm water temperatures, and transoceanic shipping traffic. Rare species captured are often used as a surrogate to assess sampling effectiveness for new or rare invasive species in vulnerable areas, such as Maumee and Sandusky bays of western Lake Erie. We compared species catches from multiple larval fish collection methods to those from adult and juvenile fish sampling. The specific objectives of this study were to: 1) evaluate the effectiveness of larval fish sampling for aquatic invasive species early detection in two bays of western Lake Erie: Maumee Bay and Sandusky Bay; 2) evaluate the effectiveness of passive and active sampling techniques at capturing different larval fish taxa; and 3) compare effectiveness of larval sampling techniques to juvenile and adult fish sampling methods for detecting new and rare species. While no new non-native species were captured during the study, we found that larval fish sampling techniques were not effective for detecting new or rare species but could be used with other life-stage sampling. Active sampling with bongo nets was more effective than light trap sampling, capturing a higher number of individuals and taxa. Juvenile and adult fish sampling methods provided higher precision in fish identification without the use of genetic tools. Because of the finer taxonomic resolution possible when identifying juvenile and adult fishes, sampling for adult and juveniles was found to be more robust and reliable for early detection of new and rare species compared to larval fish sampling. However, larval fish sampling can still be appropriate depending on study goals and objectives or as emerging technologies allow for greater taxonomic resolution of sampled fish.