GenEst user guide—Software for a generalized estimator of mortality

Techniques and Methods 7-C19
Prepared in cooperation with Bureau of Land Management and the National Renewable Energy Laboratory
By: , and 



GenEst (Generalized Estimator) is a software tool for estimating the total number of individuals arriving in an area during a specific time period when their detection probability is unknown but estimable. Its development was motivated by the need to accurately estimate the total number of bird and bat fatalities occurring at wind and solar energy facilities, but it is applicable in a variety of other contexts as well. Simple counts of carcasses are not an accurate measure of the true number of fatalities because some carcasses are inevitably missed in carcass searches. Furthermore, simple carcass counts do not allow comparison among locations or years because carcasses may be detected at different rates. This software uses data collected during carcass searches and estimates of detection rates to accurately estimate the number of fatalities and to provide a measure of precision associated with the estimate. These estimates are fundamental to understanding acute and cumulative effects of renewable energy development on wildlife populations. The software package is available with a user-friendly graphic interface as well as a flexible and powerful command-line implementation. GenEst includes tools for estimating searcher efficiency, carcass persistence, and other detection probability parameters from experimental field trials. Included in the software are example datasets for analyses, standard R package help files, this user guide, and vignettes detailing use at the command-line.

Suggested Citation

Simonis, J., Dalthorp, D., Huso, M., Mintz, J., Madsen, L., Rabie, P., and Studyvin, J., 2018, GenEst user guide—Software for a generalized estimator of mortality: U.S. Geological Survey Techniques and Methods, book 7, chap. C19, 72 p.,

ISSN: 2328-7055 (online)

Table of Contents

  • Abstract
  • Introduction
  • Data Input
  • Analyses
  • Worked Examples
  • Acknowledgments
  • References Cited
  • Appendix
Publication type Report
Publication Subtype USGS Numbered Series
Title GenEst user guide—Software for a generalized estimator of mortality
Series title Techniques and Methods
Series number 7-C19
DOI 10.3133/tm7C19
Year Published 2018
Language English
Publisher U.S. Geological Survey
Publisher location Reston, VA
Contributing office(s) Forest and Rangeland Ecosystem Science Center
Description Report: viii, 72 p.; Data Release
Larger Work Type Report
Larger Work Subtype USGS Numbered Series
Larger Work Title Section C: Computer programs in Book 7: Automated data processing and computations
Public Comments This report is Chapter 19 of Section C: Computer programs in Book 7: Automated data processing and computations.
Online Only (Y/N) Y
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