Proposed best modeling practices for assessing the effects of ecosystem restoration on fish
Kenneth A Rose, Shaye Sable, Donald L. DeAngelis, Simeon Yurek, Joel C. Trexler, William L. Graf, Denise J. Reed
2015, Ecological Modelling (300) 12-29
Large-scale aquatic ecosystem restoration is increasing and is often controversial because of the economic costs involved, with the focus of the controversies gravitating to the modeling of fish responses. We present a scheme for best practices in selecting, implementing, interpreting, and reporting of fish modeling designed to assess the effects...
Mechanisms of nutrient retention and its relation to flow connectivity in river-floodplain corridors
Laurel Larsen, Judson Harvey, Morgan M. Maglio
2015, Freshwater Science (34) 187-205
Understanding heterogeneity or patchiness in the distribution of vegetation and retention of C and nutrients in river corridors is critical for setting priorities for river management and restoration. Several mechanisms of spatial differentiation in nutrient retention in river and floodplain corridors have been recognized, but few studies have distinguished their...
Identifying the location and population served by domestic wells in California
Tyler D. Johnson, Kenneth Belitz
2015, Journal of Hydrology: Regional Studies (3) 31-86
Study region California, USA. Study focus Identification of groundwater use is an important step in the regional-scale assessment of groundwater quality. In California, 1990 US Census data indicate that domestic wells provide drinking-water to about 1.2 million people. However, the location of these domestic well users of groundwater is...
EverVIEW: a visualization platform for hydrologic and Earth science gridded data
Stephanie S. Romañach, Mark McKelvy, Kevin J. Suir, Craig Conzelmann
2015, Computers & Geosciences (76) 88-95
The EverVIEW Data Viewer is a cross-platform desktop application that combines and builds upon multiple open source libraries to help users to explore spatially-explicit gridded data stored in Network Common Data Form (NetCDF). Datasets are displayed across multiple side-by-side geographic or tabular displays, showing colorized overlays on an Earth globe...
Response of crayfish to hyporheic water availability and excess sedimentation
Joseph J. Dyer, Thomas A. Worthington, Shannon K. Brewer
2015, Hydrobiologia (747) 147-157
Crayfish in many headwater streams regularly cope with seasonal drought. However, it is unclear how landscape changes affect the long-term persistence of crayfish populations. We designed two laboratory experiments to investigate the acute effects of common landscape stressors on crayfish: water withdrawal and sedimentation. The first experiment tested the interaction...
The importance of scaling for detecting community patterns: success and failure in assemblages of introduced species
Craig R. Allen, David G. Angeler, Michael P. Moulton, Crawford S. Holling
2015, Diversity (7) 229-241
Community saturation can help to explain why biological invasions fail. However, previous research has documented inconsistent relationships between failed invasions (i.e., an invasive species colonizes but goes extinct) and the number of species present in the invaded community. We use data from bird communities of the Hawaiian island of Oahu,...
Ahead of his time: Jacob Lipman's 1930 estimate of atmospheric sulfur deposition for the conterminous United States
Edward R. Landa, James B. Shanley
2015, Soil Science (180) 87-89
A 1936 New Jersey Agricultural Experiment Station Bulletin provided an early quantitative assessment of atmospheric deposition of sulfur for the United States that has been compared in this study with more recent assessments. In the early 20th century, anthropogenic sulfur additions from the atmosphere to the soil by the combustion...
The Red Atrapa Sismos (Quake Catcher Network in Mexico): assessing performance during large and damaging earthquakes.
Luis A. Dominguez, Battalgazi Yildirim, Allen L. Husker, Elizabeth S. Cochran, Carl Christensen, Victor M. Cruz-Atienza
2015, Seismological Research Letters (86) 848-855
The Quake‐Catcher Network (QCN) is an expanding seismic array made possible by thousands of participants who volunteered time and resources from their computers to record seismic data using low‐cost accelerometers (http://qcn.stanford.edu/; last accessed December 2014). Sensors based on Micro‐Electromechanical Systems (MEMS) technology have rapidly improved over the last few...
Monitoring and modeling wetland chloride concentrations in relationship to oil and gas development
Max Post van der Burg, Brian A. Tangen
2015, Journal of Environmental Management (150) 120-127
Extraction of oil and gas via unconventional methods is becoming an important aspect of energy production worldwide. Studying the effects of this development in countries where these technologies are being widely used may provide other countries, where development may be proposed, with some insight in terms of concerns associated with...
Catalog of type specimens of recent mammals: orders Didelphimorpha through Chiroptera (Excluding Rodentia) in the National Museum of Natural History, Smithsonian Institution
Robert D. Fisher, Craig A. Ludwig
2015, Book
The type collection of Recent Mammals in the Division of Mammals, National Museum of Natural History, Smithsonian Institution, contains 820 specimens bearing names of 809 species-group taxa of Didelphimorphia through Chiroptera, excluding Rodentia, as of June 2014. This catalog presents an annotated list of these holdings comprised of 788 holotypes,...
Characterizing Congo Basin rainfall and climate using Tropical Rainfall Measuring Mission (TRMM) satellite data and limited rain gauge ground observations
Yolande A. Munzimi, Matthew C. Hansen, Bernard Adusei, Gabriel B. Senay
2015, Journal of Applied Meteorology and Climatology (54) 541-555
Quantitative understanding of Congo River basin hydrological behavior is poor because of the basin’s limited hydrometeorological observation network. In cases such as the Congo basin where ground data are scarce, satellite-based estimates of rainfall, such as those from the joint NASA/JAXA Tropical Rainfall Measuring Mission (TRMM), can be used to...
Pharmaceuticals and other contaminants of emerging concern in landfill leachate of the United States
Dana W. Kolpin, Jason R. Masoner, Edward T. Furlong, Isabelle M. Cozzarelli, James L. Gray, Eric A. Schwab
2015, Norman Network Bulletin 10-11
Landfills are commonly the final respository for a heterogeneous mixture of waste from residential, commercial, and industrial sources. The use of landfills as a means of waste disposal will likely increase as the global population increases and nations develop. Thus, landfills receiving such waste have the potential to produce leachate...
Equation-free modeling unravels the behavior of complex ecological systems
Donald L. DeAngelis, Simeon Yurek
2015, PNAS (112) 3856-3857
Ye et al. (1) address a critical problem confronting the management of natural ecosystems: How can we make forecasts of possible future changes in populations to help guide management actions? This problem is especially acute for marine and anadromous fisheries, where the large interannual fluctuations of populations, arising from complex...
Effects of fire on small mammal communities in frequent-fire forests in California
Susan L. Roberts, Douglas A. Kelt, Jan W. Van Wagtendonk, A. Keith Miles, Marc D. Meyer
2015, Journal of Mammalogy (96) 107-119
Fire is a natural, dynamic process that is integral to maintaining ecosystem function. The reintroduction of fire (e.g., prescribed fire, managed wildfire) is a critical management tool for protecting many frequent-fire forests against stand-replacing fires while restoring an essential ecological process. Understanding the effects of fire on forests and wildlife...
Quantifying suspended sediment loads delivered to Cheney Reservoir, Kansas: Temporal patterns and management implications
Mandy L. Stone, Kyle E. Juracek, Jennifer L. Graham, Guy M. Foster
2015, Journal of Soil and Water Conservation (70) 91-100
Cheney Reservoir, constructed during 1962 to 1965, is the primary water supply for the city of Wichita, the largest city in Kansas. Sediment is an important concern for the reservoir as it degrades water quality and progressively decreases water storage capacity. Long-term data collection provided a unique opportunity to estimate...
Landscape community genomics: understanding eco-evolutionary processes in complex environments
Brian K. Hand, Winsor H. Lowe, Ryan P. Kovach, Clint C. Muhlfeld, Gordon Luikart
2015, Trends in Ecology and Evolution (30) 161-168
Extrinsic factors influencing evolutionary processes are often categorically lumped into interactions that are environmentally (e.g., climate, landscape) or community-driven, with little consideration of the overlap or influence of one on the other. However, genomic variation is strongly influenced by complex and dynamic interactions between environmental and community effects. Failure to...
Environmental effects on the aquatic system and metal discharge to the Mediterranean Sea from a near-neutral zinc-ferrous sulfate mine drainage
Franco Frau, Daniela Medas, Stefania Da Pelo, Richard B. Wanty, Rosa Cidu
2015, Water, Air, & Soil Pollution (226) 1-17
After mine closure in the 1980s and subsequent shutdown of the dewatering system, groundwater rebound led to drainage outflow from the Casargiu gallery (Montevecchio mine, SW Sardinia, Italy) beginning in 1997. Mine drainage had pH 6.0 and dissolved concentrations of sulfate (5000 mg/L) and metals (e.g., 1000 mg/L Zn, 230 mg/L Fe, 150 mg/L...
Thermal maturity of Tasmanites microfossils from confocal laser scanning fluorescence microscopy
Paul C. Hackley, Jolanta Kus
2015, Fuel (143) 343-350
We report here, for the first time, spectral properties of Tasmanites microfossils determined by confocal laser scanning fluorescence microscopy (CLSM, using Ar 458 nm excitation). The Tasmanites occur in a well-characterized natural maturation sequence (Ro 0.48–0.74%) of Devonian shale (n = 3 samples) from the Appalachian Basin. Spectral property λmax shows excellent agreement...
Robust estimates of environmental effects on population vital rates: an integrated capture–recapture model of seasonal brook trout growth, survival and movement in a stream network
Benjamin H. Letcher, Paul Schueller, Ronald D. Bassar, Keith H. Nislow, Jason A. Coombs, Krzysztof Sakrejda, Michael Morrissey, Douglas B. Sigourney, Andrew R. Whiteley, Matthew J. O'Donnell, Todd L. Dubreuil
2015, Journal of Animal Ecology (84) 337-352
Modelling the effects of environmental change on populations is a key challenge for ecologists, particularly as the pace of change increases. Currently, modelling efforts are limited by difficulties in establishing robust relationships between environmental drivers and population responses.We developed an integrated capture–recapture state-space model to estimate the...
Reservoir area of influence and implications for fisheries management
Dustin R. Martin, Christopher J. Chizinski, Kevin L. Pope
2015, North American Journal of Fisheries Management (35) 185-190
Understanding the spatial area that a reservoir draws anglers from, defined as the reservoir's area of influence, and the potential overlap of that area of influence between reservoirs is important for fishery managers. Our objective was to define the area of influence for reservoirs of the Salt Valley regional fishery...
Advances in interpretation of subsurface processes with time-lapse electrical imaging
Kaminit Singha, Frederick D. Day-Lewis, Tim B. Johnson, Lee D. Slater
2015, Hydrological Processes (29) 1549-1576
Electrical geophysical methods, including electrical resistivity, time-domain induced polarization, and complex resistivity, have become commonly used to image the near subsurface. Here, we outline their utility for time-lapse imaging of hydrological, geochemical, and biogeochemical processes, focusing on new instrumentation, processing, and analysis techniques specific to monitoring. We review data collection...
In situ effects of pesticides on amphibians in the Sierra Nevada
Donald W. Sparling, John W. Bickham, Deborah Cowman, Gary M. Fellers, Thomas E. Lacher Jr., Cole W. Matson, Laura McConnell
2015, Ecotoxicology (24) 262-278
For more than 20 years, conservationists have agreed that amphibian populations around the world are declining. Results obtained through laboratory or mesocosm studies and measurement of contaminant concentrations in areas experiencing declines have supported a role of contaminants in these declines. The current study examines the effects of contaminant exposure to...
Large fractions of CO2-fixing microorganisms in pristine limestone aquifers appear to be involved in the oxidation of reduced sulfur and nitrogen compounds
Martina Herrmann, Anna Rusznyak, Denise M. Akob, Isabel Schulze, Sebastian Opitz, Kai Uwe Totsche, Kirsten Küsel
2015, Applied and Environmental Microbiology (81) 2384-2394
The traditional view of the dependency of subsurface environments on surface-derived allochthonous carbon inputs is challenged by increasing evidence for the role of lithoautotrophy in aquifer carbon flow. We linked information on autotrophy (Calvin-Benson-Bassham cycle) with that from total microbial community analysis in groundwater at two superimposed—upper and lower—limestone groundwater...
Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette
Felix Beulig, Verena B. Heuer, Denise M. Akob, Bernhard Viehweger, Marcus Elvert, Martina Herrmann, Kai-Uwe Hinrichs, Kirsten Küsel
2015, The ISME Journal (9) 746-759
Effects of extremely high carbon dioxide (CO2) concentrations on soil microbial communities and associated processes are largely unknown. We studied a wetland area affected by spots of subcrustal CO2 degassing (mofettes) with focus on anaerobic autotrophic methanogenesis and acetogenesis because the pore gas phase was largely hypoxic. Compared with a reference...
Next-generation genomic shotgun sequencing indicates greater genetic variability in the mitochondria of Hypophthalmichthys molitrix relative to H. nobilis from the Mississippi River, USA and provides tools for research and detection
John J Miller, Michael S. Eackles, Jay R Stauffer, Tim L. King
2015, Conservation Genetics Resources (7) 9-11
We characterized variation within the mitochondrial genomes of the invasive silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis) from the Mississippi River drainage by mapping our Next-Generation sequences to their publicly available genomes. Variant detection resulted in 338 single-nucleotide polymorphisms for H. molitrix and 39...