Spatial genetic structure of bristle-thighed curlews (Numenius tahitiensis): Breeding area differentiation not reflected on the non-breeding grounds
Sarah A. Sonsthagen, T. Lee Tibbitts, Robert E. Gill Jr., Ian S. Williams, Sandra L. Talbot
2015, Conservation Genetics (16) 223-233
Migratory birds occupy geographically and ecologically disparate areas during their annual cycle with conditions on breeding and non-breeding grounds playing separate and important roles in population dynamics. We used data from nuclear microsatellite and mitochondrial DNA control region loci to assess the breeding and non-breeding spatial genetic structure of a...
Site-scale disturbance and habitat development best predict an index of amphibian biotic integrity in Ohio shrub and forested wetlands
Mick Micacchion, Martin A. Stapanian, Jean V. Adams
2015, Wetlands (35) 509-519
We determined the best predictors of an index of amphibian biotic integrity calculated from 54 shrub and forested wetlands in Ohio, USA using a two-step sequential holdout validation procedure. We considered 13 variables as predictors: four metrics of wetland condition from the Ohio Rapid Assessment Method (ORAM), a wetland vegetation...
Integrated survival analysis using an event-time approach in a Bayesian framework
Daniel P. Walsh, VJ Dreitz, Dennis M. Heisey
2015, Ecology and Evolution (5) 769-780
Event-time or continuous-time statistical approaches have been applied throughout the biostatistical literature and have led to numerous scientific advances. However, these techniques have traditionally relied on knowing failure times. This has limited application of these analyses, particularly, within the ecological field where fates of marked animals may be unknown. To...
Ephemeral stream reaches preserve the evolutionary and distributional history of threespine stickleback in the Santa Clara and Ventura River watersheds of southern California
Jonathan Q. Richmond, David K. Jacobs, Adam R. Backlin, Camm C. Swift, Chris Dellith, Robert N. Fisher
2015, Conservation Genetics (16) 85-101
Much remains to be understood about the evolutionary history and contemporary landscape genetics of unarmored threespine stickleback in southern California, where populations collectively referred to as Gasterosteus aculeatus williamsoni have severely declined over the past 70+ years and are now endangered. We used mitochondrial sequence and microsatellite data to assess...
An open-population hierarchical distance sampling model
Rachel Sollmann, Beth Gardner, Richard B Chandler, J. Andrew Royle, T Scott Sillett
2015, Ecology (96) 325-331
Modeling population dynamics while accounting for imperfect detection is essential to monitoring programs. Distance sampling allows estimating population size while accounting for imperfect detection, but existing methods do not allow for direct estimation of demographic parameters. We develop a model that uses temporal correlation in abundance arising from underlying population...
Magmatic gas emissions at Holocene volcanic features near Mono Lake, California, and their relation to regional magmatism
D. Bergfeld, William C. Evans, James F. Howle, Andrew G. Hunt
2015, Journal of Volcanology and Geothermal Research (292) 70-83
Silicic lavas have erupted repeatedly in the Mono Basin over the past few thousand years, forming the massive domes and coulees of the Mono Craters chain and the smaller island vents in Mono Lake. We report here on the first systematic study of magmatic CO2 emissions from these features, conducted during...
Nest visits and capture events affect breeding success of Yellow-billed and Pacific loons
Brian D. Uher-Koch, Joel A. Schmutz, Kenneth G. Wright
2015, Condor (7) 121-129
Accurate estimates of breeding success are essential for understanding population dynamics and for managing populations. Unfortunately, research activities to collect these data can negatively impact the breeding success of the study species and bias estimates of breeding success. Despite the potential for negative impacts, few studies have documented the effect...
Differences between main-channel and off-channel food webs in the upper Mississippi River revealed by fatty acid profiles of consumers
James H. Larson, Michelle Bartsch, Steve Gutreuter, Brent C. Knights, Lynn Bartsch, William B. Richardson, Jonathan M. Vallazza, Michael T. Arts
2015, Inland Waters (5) 101-106
Large river systems are often thought to contain a mosaic of patches with different habitat characteristics driven by differences in flow and mixing environments. Off-channel habitats (e.g., backwater areas, secondary channels) can become semi-isolated from main-channel water inputs, leading to the development of distinct biogeochemical environments. Observations of adult bluegill...
Suspended-sediment trapping in the tidal reach of an estuarine tributary channel
Maureen A. Downing-Kunz, David H. Schoellhamer
2015, Estuaries and Coasts (38) 2198-2212
Evidence of decreasing sediment supply to estuaries and coastal oceans worldwide illustrates the need for accurate and updated estimates. In the San Francisco Estuary (Estuary), recent research suggests a decrease in supply from its largest tributaries, implying the increasing role of smaller, local tributaries in sediment supply to this estuary....
Do shrubs reduce the adverse effects of grazing on soil properties?
David J. Eldridge, Genevieve Beecham, James B. Grace
2015, Ecohydrology (8) 1503-1513
Increases in the density of woody plants are a global phenomenon in drylands, and large aggregations of shrubs, in particular, are regarded as being indicative of dysfunctional ecosystems. There is increasing evidence that overgrazing by livestock reduces ecosystem functions in shrublands, but that shrubs may buffer the negative effects of...
Vegetation and non-native ungulate monitoring at the Big Island National Wildlife Refuge Complex 2010–2014.
Steven C. Hess, Christina R. Leopold, Steven J. Kendall
2015, Technical Report HCSU-062
The Hakalau Forest Unit (HFU) of Big Island National Wildlife Refuge Complex (BINWRC) has intensively managed feral cattle (Bos taurus) and pigs (Sus scrofa) and monitored non-native ungulate presence and distribution during surveys of all managed areas since 1988. We: 1) provide results from recent ungulate surveys at HFU to...
Tectonic activity as a significant source of crustal tetrafluoromethane emissions to the atmosphere: observations in groundwaters along the San Andreas Fault
Daniel A. Deeds, Justin T. Kulongoski, Jens Muhle, Ray F. Weiss
2015, Earth and Planetary Science Letters (412) 163-172
Tetrafluoromethane (CF4) concentrations were measured in 14 groundwater samples from the Cuyama Valley, Mil Potrero and Cuddy Valley aquifers along the Big Bend section of the San Andreas Fault System (SAFS) in California to assess whether tectonic activity in this region is a significant source of crustal CF4 to the...
A method for estimating the diffuse attenuation coefficient (KdPAR)from paired temperature sensors
Jordan S. Read, Kevin C. Rose, Luke A. Winslow, Emily K. Read
2015, Limnology and Oceanography: Methods (13) 53-61
A new method for estimating the diffuse attenuation coefficient for photosynthetically active radiation (KdPAR) from paired temperature sensors was derived. We show that during cases where the attenuation of penetrating shortwave solar radiation is the dominant source of temperature changes, time series measurements of water temperatures at multiple depths (z1 and z2)...
Variations in community exposure to lahar hazards from multiple volcanoes in Washington State (USA)
Angela K. Diefenbach, Nathan J. Wood, John W. Ewert
2015, Journal of Applied Volcanology (4)
Understanding how communities are vulnerable to lahar hazards provides critical input for effective design and implementation of volcano hazard preparedness and mitigation strategies. Past vulnerability assessments have focused largely on hazards posed by a single volcano, even though communities and officials in many parts of the world must plan for...
Evaluation of satellite rainfall estimates for drought and flood monitoring in Mozambique
Carolien Tote, Domingos Patricio, Hendrik Boogaard, Raymond van der Wijngaart, Elena Tarnavsky, Christopher C. Funk
2015, Remote Sensing (7) 1758-1776
Satellite derived rainfall products are useful for drought and flood early warning and overcome the problem of sparse, unevenly distributed and erratic rain gauge observations, provided their accuracy is well known. Mozambique is highly vulnerable to extreme weather events such as major droughts and floods and thus, an understanding of...
Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
Brian K. Hand, Tyler D Hether, Ryan P. Kovach, Clint C. Muhlfeld, Stephen J. Amish, Matthew C. Boyer, Sean M. O’Rourke, Michael R. Miller, Winsor H. Lowe, Paul A. Hohenlohe, Gordon Luikart
2015, Current Zoology (61) 146-154
Invasive hybridization and introgression pose a serious threat to the persistence of many native species. Understanding the effects of hybridization on native populations (e.g., fitness consequences) requires numerous species-diagnostic loci distributed genome-wide. Here we used RAD sequencing to discover thousands of single-nucleotide polymorphisms (SNPs) that are diagnostic between rainbow trout...
Ground motion observations of the 2014 South Napa earthquake
Annemarie S. Baltay, John Boatwright
2015, Seismological Research Letters (86) 355-360
Ground motions of the South Napa earthquake (24 August 2014; M 6.0) were recorded at 19 stations within 20 km and 292 stations within 100 km of the rupture surface trace, generating peak ground motions in excess of 50%g and 50 cm/s in and near Napa Valley. This large dataset allows us to compare the...
Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes
Kurt P. Kowalski, Charles W. Bacon, Wesley A. Bickford, Heather A. Braun, Keith Clay, Michele Leduc-Lapierre, Elizabeth Lillard, Melissa K. McCormick, Eric Nelson, Monica Torres, James W. C. White, Douglas A. Wilcox
2015, Frontiers in Microbiology (6)
A growing body of literature supports microbial symbiosis as a foundational principle for the competitive success of invasive plant species. Further exploration of the relationships between invasive species and their associated microbiomes, as well as the interactions with the microbiomes of native species, can lead to key new insights into...
Vegetation burn severity mapping using Landsat-8 and WorldView-2
Zhuoting Wu, Barry R. Middleton, Robert Hetzler, John M. Vogel, Dennis G. Dye
2015, Photogrammetric Engineering and Remote Sensing (2) 143-154
We used remotely sensed data from the Landsat-8 and WorldView-2 satellites to estimate vegetation burn severity of the Creek Fire on the San Carlos Apache Reservation, where wildfire occurrences affect the Tribe's crucial livestock and logging industries. Accurate pre- and post-fire canopy maps at high (0.5-meter) resolution were created from...
Anomalous solute transport in saturated porous media: Relating transport model parameters to electrical and nuclear magnetic resonance properties
Ryan D Swanson, Andrew Binley, Kristina Keating, Samantha France, Gordon Osterman, Frederick D. Day-Lewis, Kamini Singha
2015, Water Resources Research (51) 1264-1283
The advection-dispersion equation (ADE) fails to describe commonly observed non-Fickian solute transport in saturated porous media, necessitating the use of other models such as the dual-domain mass-transfer (DDMT) model. DDMT model parameters are commonly calibrated via curve fitting, providing little insight into the relation between effective parameters and physical properties...
Sources of fine sediment stored in agricultural lowland streams, Midwest, USA
Jasmeet Lamba, Anita M. Thompson, K.G. Karthikeyan, Faith A. Fitzpatrick
2015, Geomorphology (236) 44-53
Agricultural activities can accelerate the offsite transport of productive soil from fields leading to stream water quality degradation. Identification of the nature and relative contribution of different sources to fine-grained sediment (e.g., silts, clays) in streams is important to effectively focus agricultural best management...
Preliminary evaluation of an in vivo fluorometer to quantify algal periphyton biomass and community composition
Theodore D. Harris, Jennifer L. Graham
2015, Lake and Reservoir Management (31) 127-133
The bbe-Moldaenke BenthoTorch (BT) is an in vivo fluorometer designed to quantify algal biomass and community composition in benthic environments. The BT quantifies total algal biomass via chlorophyll a (Chl-a) concentration and may differentiate among cyanobacteria, green algae, and diatoms based on pigment fluorescence. To evaluate how BT measurements of...
Aeolian responses to climate variability during the past century on Mesquite Lake Playa, Mojave Desert
John W. Whitney, George N. Breit, S.E. Buckingham, Richard L. Reynolds, Rian C. Bogle, Lifeng Luo, Harland L. Goldstein, John M. Vogel
2015, Geomorphology (230) 13-25
The erosion and deposition of sediments by wind from 1901 to 2013 have created large changes in surface features of Mesquite Lake playa in the Mojave Desert. The decadal scale recurrence of sand-sheet development, migration, and merging with older dunes appears related to decadal climatic changes of drought and wetness...
Ecosystem-atmosphere exchange of CO2 in a temperate herbaceous peatland in the Sanjiang Plain of northeast China
Xiaoyan Zhu, Changchun Song, Christopher M. Swarzenski, Yuedong Guo, Xinhow Zhang, Jiaoyue Wang
2015, Ecological Engineering (75) 16-23
Northern peatlands contain a considerable share of the terrestrial carbon pool, which will be affected by future climatic variability. Using the static chamber technique, we investigated ecosystem respiration and soil respiration over two growing seasons (2012 and 2013) in a Carex lasiocarpa-dominated peatland in the Sanjiang Plain in China. We...
The aging of America's reservoirs: In-reservoir and downstream physical changes and habitat implications
Kyle E. Juracek
2015, Journal of the American Water Resources Association (51) 168-184
Reservoirs are important for various purposes including flood control, water supply, power generation, and recreation. The aging of America's reservoirs and progressive loss of water storage capacity resulting from ongoing sedimentation, coupled with increasing societal needs, will cause the social, economic, environmental, and political importance of reservoirs to continually increase....
