Bench-top validation testing of selected immunological and molecular Renibacterium salmoninarum diagnostic assays by comparison with quantitative bacteriological culture
D.G. Elliott, L.J. Applegate, A.L. Murray, M. K. Purcell, C.L. McKibben
2013, Journal of Fish Diseases (36) 779-809
No gold standard assay exhibiting error-free classification of results has been identified for detection of Renibacterium salmoninarum, the causative agent of salmonid bacterial kidney disease. Validation of diagnostic assays for R. salmoninarum has been hindered by its unique characteristics and biology, and difficulties in locating suitable populations of reference test animals....
Development and evaluation of a bioenergetics model for bull trout
Matthew G. Mesa, Lisa K. Welland, Helena E. Christiansen, Sally T. Sauter, David A. Beauchamp
2013, Transactions of the American Fisheries Society (142) 41-49
We conducted laboratory experiments to parameterize a bioenergetics model for wild Bull Trout Salvelinus confluentus, estimating the effects of body mass (12–1,117 g) and temperature (3–20°C) on maximum consumption (C max) and standard metabolic rates. The temperature associated with the highest C max was 16°C, and C max showed the...
Tidal flow dynamics and background fluorescence of the Atlantic Intracoastal Waterway in the vicinity of Sullivan’s Island and the Isle of Palms, South Carolina, 2011-12
Paul Conrads, Celeste A. Journey, Jimmy M. Clark, Victor A. Levesque
2013, Open-File Report 2013-1077
To effectively plan site-specific studies to understand the connection between wastewater effluent and shellfish beds, data are needed concerning flow dynamics and background fluorescence in the Atlantic Intracoastal Waterway near the effluent outfalls on Sullivan’s Island and the Isle of Palms. Tidal flows were computed by the U.S. Geological Survey...
Numerical simulation of groundwater and surface-water interactions in the Big River Management Area, central Rhode Island
John P. Masterson, Gregory E. Granato
2013, Scientific Investigations Report 2012-5077
The Rhode Island Water Resources Board is considering use of groundwater resources from the Big River Management Area in central Rhode Island because increasing water demands in Rhode Island may exceed the capacity of current sources. Previous water-resources investigations in this glacially derived, valley-fill aquifer system have focused primarily on...
Spatial segregation of spawning habitat limits hybridization between sympatric native Steelhead and Coastal Cutthroat Trout
T.W. Buehrens, J. Glasgow, Carl O. Ostberg, T.P. Quinn
2013, Transactions of the American Fisheries Society (142) 221-233
Native Coastal Cutthroat Trout Oncorhynchus clarkii clarkii and Coastal Steelhead O. mykiss irideus hybridize naturally in watersheds of the Pacific Northwest yet maintain species integrity. Partial reproductive isolation due to differences in spawning habitat may limit hybridization between these species, but this process is poorly understood. We used a riverscape approach to determine the...
Comparative susceptibility among three stocks of yellow perch, Perca flavescens (Mitchill), to viral haemorrhagic septicaemia virus strain IVb from the Great Lakes
W. Olson, E. Emmenegger, J. Glenn, J. Winton, F. Goetz
2013, Journal of Fish Diseases (36) 711-719
The Great Lakes strain of viral haemorrhagic septicaemia virus IVb (VHSV-IVb) is capable of infecting a wide number of naive species and has been associated with large fish kills in the Midwestern United States since its discovery in 2005. The yellow perch, Perca flavescens (Mitchill), a freshwater species commonly found throughout inland...
Emergence of MD type infectious hematopoietic necrosis virus in Washington State coastal steelhead trout
Rachel Breyta, Amelia Jones, Bruce Stewart, Ray Brunson, Joan Thomas, John Kerwin, Jim Bertolini, Sonia Mumford, Chris Patterson, Gael Kurath
2013, Diseases of Aquatic Organisms (104) 179-195
Infectious hematopoietic necrosis virus (IHNV) occurs in North America as 3 major phylogenetic groups designated U, M, and L. In coastal Washington State, IHNV has historically consisted of U genogroup viruses found predominantly in sockeye salmon Oncorhynchus nerka. M genogroup IHNV, which has host-specific virulence for rainbow and steelhead...
Radiometric cross-calibration of EO-1 ALI with L7 ETM+ and Terra MODIS sensors using near-simultaneous desert observations
Gyanesh Chander, Amit Angal, Taeyoung Choi, Xiaoxiong Xiong
2013, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (6) 386-399
The Earth Observing-1 (EO-1) satellite was launched on November 21, 2000, as part of a one-year technology demonstration mission. The mission was extended because of the value it continued to add to the scientific community. EO-1 has now been operational for more than a decade, providing both multispectral and hyperspectral...
Developing a new stream metric for comparing stream function using a bank-floodplain sediment budget: a case study of three Piedmont streams
Edward R. Schenk, Cliff R. Hupp, Allen Gellis, Greg Noe
2013, Earth Surface Processes and Landforms (38) 771-784
A bank and floodplain sediment budget was created for three Piedmont streams tributary to the Chesapeake Bay. The watersheds of each stream varied in land use from urban (Difficult Run) to urbanizing (Little Conestoga Creek) to agricultural (Linganore Creek). The purpose of the study was to determine the relation between...
Modeling ecological minimum requirements for distribution of greater sage-grouse leks: implications for population connectivity across their western range, U.S.A.
Steven T. Knick, Steven E. Hanser, Kristine L. Preston
2013, Ecology and Evolution (3) 1539-1551
Greater sage-grouse Centrocercus urophasianus (Bonaparte) currently occupy approximately half of their historical distribution across western North America. Sage-grouse are a candidate for endangered species listing due to habitat and population fragmentation coupled with inadequate regulation to control development in critical areas. Conservation planning would benefit from accurate maps delineating required...
Descriptors of natural thermal regimes in streams and their responsiveness to change in the Pacific Northwest of North America
Ivan Arismendi, Sherri L. Johnson, Jason B. Dunham, Roy Haggerty
2013, Freshwater Biology (58) 880-894
1. Temperature is a major driver of ecological processes in stream ecosystems, yet the dynamics of thermal regimes remain poorly described. Most work has focused on relatively simple descriptors that fail to capture the full range of conditions that characterise thermal regimes of streams across seasons or throughout the year. 2....
Archive of post-Hurricane Isabel coastal oblique aerial photographs collected during U.S. Geological Survey Field Activity 03CCH01 from Ocean City, Maryland, to Fort Caswell, North Carolina and Inland from Waynesboro to Redwood, Virginia, September 21 - 23, 2003
Janice A. Subino, Karen L.M. Morgan, M. Dennis Krohn, Shawn V. Dadisman
2013, Data Series 761
On September 21 - 23, 2003, the United States Geological Survey (USGS) conducted an oblique aerial photographic survey along the Atlantic coast from Ocean City, Md., to Fort Caswell, N.C., and inland oblique aerial photographic survey from Waynesboro to Redwood, Va., aboard a Navajo Piper twin-engine airplane. The coastal survey...
Effects of simulated angler capture and live-release tournaments on walleye survival
John H. Loomis, Harold L. Schramm Jr., Bruce C. Vondracek, Patrick D. Gerard, Christopher J. Chizinski
2013, Transactions of the American Fisheries Society (142) 868-875
We examined the effects of acclimation water temperature,live‐well (LW) water temperature,and LW dissolved oxygen (DO) concentration on survival of adult Walleyes Sander vitreus subjected to simulated tournament conditions (angling,LW confinement,and weigh‐in procedures) under controlled laboratory conditions. We tested three acclimation temperatures (12,18,and 24°C),and three LW temperature differentials (ΔT = −4,0,and +4°C) were tested...
The energy-water nexus: Potential groundwater-quality degradation associated with production of shale gas
Yousif K. Kharaka, James J. Thordsen, Christopher H. Conaway, Randal B. Thomas
2013, Procedia Earth and Planetary Science (7) 422
Oil and natural gas have been the main sources of primary energy in the USA, providing 63% of the total energy consumption in 2011. Petroleum production, drilling operations, and improperly sealed abandoned wells have caused significant local groundwater contamination in many states, including at the USGS OSPER sites in Oklahoma....
Effects of currents and tides on fine-scale use of marine bird habitats in a Southeast Alaska hotspot
Gary S. Drew, John F. Piatt, David J. Hill
2013, MEPS (487) 275-286
Areas with high species richness have become focal points in the establishment of marine protected areas, but an understanding of the factors that support this diversity is still incomplete. In coastal areas, tidal currents—modulated by bathymetry and manifested in variable speeds—are a dominant physical feature of the environment. However, difficulties...
Map Showing Principal Coal Beds and Bedrock Geology of the Ucross-Arvada Area, Central Powder River Basin, Wyoming
Carol L. Molnia
2013, Scientific Investigations Map 3240
The Ucross-Arvada area is part of the Powder River Basin, a large, north-trending structural depression between the Black Hills on the east and the Bighorn Mountains on the west. Almost all of the study area is within Sheridan and Johnson Counties, Wyoming. Most of the Ucross-Arvada area lies within the...
Comparing rapid and culture indicator bacteria methods at inland lake beaches
Donna S. Francy, Rebecca N. Bushon, Amie M. G. Brady, Christopher M. Kephart
2013, Lake and Reservoir Management (29) 99-102
A rapid method, quantitative polymerase chain reaction (qPCR), for quantifying indicator bacteria in recreational waters is desirable for public health protection. We report that replacing current Escherichia coli standards with new US Environmental Protection Agency beach action values (BAVs) for enterococci by culture or qPCR may result in more advisories...
Groundwater and surface-water interactions near White Bear Lake, Minnesota, through 2011
Perry M. Jones, Jared J. Trost, Donald O. Rosenberry, P. Ryan Jackson, Jenifer A. Bode, Ryan M. O’Grady
2013, Scientific Investigations Report 2013-5044
The U.S. Geological Survey, in cooperation with the White Bear Lake Conservation District, the Minnesota Pollution Control Agency, the Minnesota Department of Natural Resources, and other State, county, municipal, and regional planning agencies, watershed organizations, and private organizations, conducted a study to characterize groundwater and surface-water interactions near White Bear...
Structural evolution of the east Sierra Valley system (Owens Valley and vicinity), California: a geologic and geophysical synthesis
Calvin H. Stevens, Paul Stone, Richard J. Blakely
2013, Geosciences (3) 176-215
The tectonically active East Sierra Valley System (ESVS), which comprises the westernmost part of the Walker Lane-Eastern California Shear Zone, marks the boundary between the highly extended Basin and Range Province and the largely coherent Sierra Nevada-Great Valley microplate (SN-GVm), which is moving relatively NW. The recent history of the...
Groundwater-level trends and forecasts, and salinity trends, in the Azraq, Dead Sea, Hammad, Jordan Side Valleys, Yarmouk, and Zarqa groundwater basins, Jordan
Daniel J. Goode, Lisa A. Senior, Ali Subah, Ayman Jaber
2013, Open-File Report 2013-1061
Changes in groundwater levels and salinity in six groundwater basins in Jordan were characterized by using linear trends fit to well-monitoring data collected from 1960 to early 2011. On the basis of data for 117 wells, groundwater levels in the six basins were declining, on average about -1 meter per...
Controls on variations in MODIS fire radiative power in Alaskan boreal forests: implications for fire severity conditions
Kirsten Barrett, Eric S. Kasischke
2013, Remote Sensing and the Environment (130) 171-181
Fire activity in the Alaskan boreal forest, though episodic at annual and intra-annual time scales, has experienced an increase over the last several decades. Increases in burned area and fire severity are not only releasing more carbon to the atmosphere, but likely shifting vegetation composition in the region towards greater...
Current and future land use around a nationwide protected area network
Christopher M. Hamilton, Sebastian Martinuzzi, Andrew J. Plantinga, Volker C. Radeloff, David J. Lewis, Wayne E. Thogmartin, Patricia J. Heglund, Anna M. Pidgeon
2013, PLoS ONE (8)
Land-use change around protected areas can reduce their effective size and limit their ability to conserve biodiversity because land-use change alters ecological processes and the ability of organisms to move freely among protected areas. The goal of our analysis was to inform conservation planning efforts for a nationwide network of...
Comparing Laser Desorption Ionization and Atmospheric Pressure Photoionization Coupled to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry To Characterize Shale Oils at the Molecular Level
Yunjo Cho, Jang Mi Jin, Matthias Witt, Justin E. Birdwell, Jeong-Geol Na, Nam-Sun Roh, Sunghwan Kim
2013, Energy & Fuels (27) 1830-1837
Laser desorption ionization (LDI) coupled to Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) was used to analyze shale oils. Previous work showed that LDI is a sensitive ionization technique for assessing aromatic nitrogen compounds, and oils generated from Green River Formation oil shales are well-documented as being rich...
Clinical and molecular epidemiology of veterinary blastomycosis in Wisconsin
Jennifer L. Anderson, Brian L. Sloss, Jennifer K. Meece
2013, BMC Veterinary Research (9)
Variations in soil detachment rates after wildfire as a function of soil depth, flow properties, and root properties
John A. Moody, Peter Nyman
2013, Scientific Investigations Report 2012-5233
Wildfire affects hillslope erosion through increased surface runoff and increased sediment availability, both of which contribute to large post-fire erosion events. Relations between soil detachment rate, soil depth, flow and root properties, and fire impacts are poorly understood and not represented explicitly in commonly used post-fire erosion models. Detachment rates...