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Publication Extents

Not all publications have extents, not all extents are completely accurate
Disrupted carbon cycling in restored and unrestored urban streams: Critical timescales and controls
L. G. Larsen, Judson Harvey
2017, Limnology and Oceanography (62) S160-S182
Carbon fixation and respiration in flowing waterways play significant roles in global and regional carbon budgets, yet how land use and watershed management interact with temporal disturbances (storms) to influence metabolism remains poorly understood. Here, we combine long-term with synoptic sampling of metabolism and its variable controls in neighboring watersheds...
Tree sampling as a method to assess vapor intrusion potential at a site characterized by VOC-contaminated groundwater and soil
Jordan L. Wilson, Matthew A. Limmer, V.A. Samaranayake, John G. Schumacher, Joel G. Burken
2017, Environmental Science & Technology (51) 10369-10378
Vapor intrusion (VI) by volatile organic compounds (VOCs) in the built environment presents a threat to human health. Traditional VI assessments are often time-, cost-, and labor-intensive; whereas traditional subsurface methods sample a relatively small volume in the subsurface and are difficult to collect within and near structures. Trees could...
Organic chemical characterization and mass balance of a hydraulically fractured well: From fracturing fluid to produced water over 405 days
James Rosenblum, E. Michael Thurman, Imma Ferrer, George R. Aiken, Karl G. Linden
2017, Environmental Science & Technology (51) 14006-14015
A long-term field study (405 days) of a hydraulically fractured well from the Niobrara Formation in the Denver-Julesburg Basin was completed. Characterization of organic chemicals used in hydraulic fracturing and their changes through time, from the preinjected fracturing fluid to the produced water, was conducted. The characterization consisted of a...
The relative effectiveness of empirical and physical models for simulating the dense undercurrent of pyroclastic flows under different emplacement conditions
Sarah E. Ogburn, Eliza S Calder
2017, Frontiers in Earth Science (5) 1-26
High concentration pyroclastic density currents (PDCs) are hot avalanches of volcanic rock and gas and are among the most destructive volcanic hazards due to their speed and mobility. Mitigating the risk associated with these flows depends upon accurate forecasting of possible impacted areas, often using empirical or physical models. TITAN2D,...
Climate and land-use change in wetlands: A dedication
Beth A. Middleton
2017, Ecosystem Health and Sustainability (3) 1-2
Future climate and land-use change may wreak havoc on wetlands, with the potential to erode their values as harbors for biota and providers of human services. Wetlands are important to protect, particularly because these provide a variety of ecosystem services including wildlife habitat, water purification, flood storage, and storm protection...
Distribution and status of five non-native fish species in the Tampa Bay drainage (USA), a hot spot for fish introductions
Katelyn M. Lawson, Quenton M. Tuckett, Jared L. Ritch, Leo Nico, Pam Fuller, Richard E. Matheson, Jeffrey E. Hill
2017, BioInvasions Records (6) 393-406
The Tampa Bay region of Florida (USA) is a hot spot for non-native freshwater fishes. However, published information on most non-native fishes in the basin is not current. Systematic sampling efforts targeting non-native fishes in the region were conducted from 2013–2015 by the University of Florida Tropical Aquaculture Laboratory. Data...
Swimming behaviour and ascent paths of brook trout in a corrugated culvert
Elsa Goerig, Normand E. Bergeron, Theodore R. Castro-Santos
2017, River Research and Applications (33) 1463-1471
Culverts may restrict fish movements under some hydraulic conditions such as shallow flow depths or high velocities. Although swimming capacity imposes limits to passage performance, behaviour also plays an important role in the ability of fish to overcome velocity barriers. Corrugated metal culverts are characterized by unsteady flow and existence...
Remote sensing for wetland mapping and historical change detection at the Nisqually River Delta
Laurel Ballanti, Kristin B. Byrd, Isa Woo, Christopher Ellings
2017, Sustainability (9) 1-32
Coastal wetlands are important ecosystems for carbon storage and coastal resilience to climate change and sea-level rise. As such, changes in wetland habitat types can also impact ecosystem functions. Our goal was to quantify historical vegetation change within the Nisqually River watershed relevant to carbon storage, wildlife habitat, and wetland...
Refined conservation strategies for Golden-winged Warblers in the West Virginia highlands with implications for the broader avian community
Kyle R. Aldinger, Petra B. Wood, Catherine M. Johnson
2017, The Condor (119) 762-786
Golden-winged Warbler (Vermivora chrysoptera) populations in the Appalachian Mountains region of North America are imperiled, warranting species-specific conservation. However, management for Golden-winged Warblers can affect both early-successional and forest species, many of which are also declining in the region. We conducted point counts in sites representing a range of successional...
Concepts: Assessing tiger population dynamics using capture–recapture sampling
J. Andrew Royle, Arjun M. Gopalaswamy, Robert Dorazio, James D. Nichols, Devcharan Jathanna, Ravishankar Parameshwaran
2017, Book chapter, Methods for monitoring tiger and prey populations
Capture-recapture can be viewed as an animal survey method in which the count statistic is the total number of animals caught, and the associated detection probability is the probability of capture....
Use of swabs for sampling epithelial cells for molecular genetics analyses in Enteroctopus
Nathan Hollenback, David Scheel, Megan C. Gravley, George K. Sage, Rebecca K. Toussaint, Sandra L. Talbot
2017, American Malacological Bulletin (35) 145-157
We evaluated the efficacy of using swabs to collect cells from the epidermis of octopus as a non-invasive DNA source for classical genetic studies, and demonstrated value of the technique by incorporating it into an effort to determine, within a day, the lineage of captured, live Enteroctopus (E. dofleini or a cryptic lineage)....
Breeding biology of an endemic Bornean turdid, the Fruithunter (Chlamydochaera jefferyi), and life history comparisons with Turdus species of the world
Adam E. Mitchell, Fred Tuh, Thomas E. Martin
2017, Wilson Journal of Ornithology (129) 36-45
We present the first description of the breeding biology for the Fruithunter (Chlamydochaera jefferyi), a member of the cosmopolitan family Turdidae, and a montane endemic to the tropical Asian island of Borneo. We also compile breeding biology traits from the literature to make comparisons between the Fruithunter and the thrush...
Loss of ecosystem services due to chronic pollution of forests and surface waters in the Adirondack region (USA)
Colin M. Beier, Jesse Caputo, Gregory B. Lawrence, Timothy J. Sullivan
2017, Journal of Environmental Management (191) 19-27
Sustaining recent progress in mitigating acid pollution could require lower emissions caps that will give rise to real or perceived tradeoffs between healthy ecosystems and inexpensive energy. Because most impacts of acid rain affect ecosystem functions that are poorly understood by policy-makers and the public, an ecosystem services (ES) framework...
Dynamic optimization of landscape connectivity embedding spatial-capture-recapture information
Yexiang Xue, Xiaojian Wu, Dana J. Morin, Bistra Dilkina, Angela K. Fuller, J. Andrew Royle, Carla P. Gomes
2017, Conference Paper, Proceedings of the Thirty-First Conference on Artificial Intelligence (AAAI-17)
Maintaining landscape connectivity is increasingly important in wildlife conservation, especially for species experiencing the effects of habitat loss and fragmentation. We propose a novel approach to dynamically optimize landscape connectivity. Our approach is based on a mixed integer program formulation, embedding a spatial capture-recapture model that estimates the density, space usage, and landscape connectivity for a given...
A model-based approach to wildland fire reconstruction using sediment charcoal records
Malcolm S. Itter, Andrew O. Finley, Mevin Hooten, Philip E. Higuera, Jennifer R. Marlon, Ryan Kelly, Jason S. McLachlan
2017, Environmetrics (28) 1-15
Lake sediment charcoal records are used in paleoecological analyses to reconstruct fire history, including the identification of past wildland fires. One challenge of applying sediment charcoal records to infer fire history is the separation of charcoal associated with local fire occurrence and charcoal originating from regional fire activity. Despite a...
Estimating the high-arsenic domestic-well population in the conterminous United States
Joseph D. Ayotte, Laura Medalie, Sharon L. Qi, Lorraine C. Backer, Bernard T. Nolan
2017, Environmental Science & Technology (51) 12443-12454
Arsenic concentrations from 20 450 domestic wells in the U.S. were used to develop a logistic regression model of the probability of having arsenic >10 μg/L (“high arsenic”), which is presented at the county, state, and national scales. Variables representing geologic sources, geochemical, hydrologic, and physical features were among the significant...
Survival, movement, and distribution of juvenile Burbot in a tributary of the Kootenai River
Zachary S. Beard, Michael C. Quist, Ryan S. Hardy, Tyler J. Ross
2017, North American Journal of Fisheries Management (37) 1274-1288
Burbot Lota lota in the lower Kootenai River, Idaho, have been the focus of extensive conservation efforts, particularly the release of hatchery-reared juvenile Burbot into small tributaries. The Idaho Department of Fish and Game installed a fixed PIT antenna on Deep Creek, a tributary of the Kootenai River, to evaluate movement of...
Skin and fur bacterial diversity and community structure on American southwestern bats: effects of habitat, geography and bat traits
Ara S. Winter, Jennifer J. M. Hathaway, Jason C. Kimble, Debbie C. Buecher, Ernest W. Valdez, Andrea Porras-Alfaro, Jesse M. Young, Kaitlyn J. H. Read, Diana E. Northup
2017, PeerJ (5)
Microorganisms that reside on and in mammals, such as bats, have the potential to influence their host’s health and to provide defenses against invading pathogens. However, we have little understanding of the skin and fur bacterial microbiota on bats, or factors that influence the structure of these communities. The southwestern...
Environmental niche models for riverine desert fishes and their similarity according to phylogeny and functionality
James E. Whitney, Joanna B. Whittier, Craig P. Paukert
2017, Ecosphere (8) 1-21
Environmental filtering and competitive exclusion are hypotheses frequently invoked in explaining species' environmental niches (i.e., geographic distributions). A key assumption in both hypotheses is that the functional niche (i.e., species traits) governs the environmental niche, but few studies have rigorously evaluated this assumption. Furthermore, phylogeny could be associated with these...
Top-down and bottom-up interactions influence fledging success at North America’s largest colony of Caspian terns (Hydroprogne caspia)
Stefanie Collar, Daniel D. Roby, Donald E. Lyons
2017, Estuaries and Coasts (40) 1808-1818
Our study investigated the influence of bottom-up and top-down drivers on the declining fledging success at a once thriving breeding colony of Caspian terns (Hydroprogne caspia). Situated at the mouth of the Columbia River, OR, East Sand Island (ESI) is home to the largest Caspian tern breeding colony...
Rapid exhumation of Cretaceous arc-rocks along the Blue Mountains restraining bend of the Enriquillo-Plantain Garden fault, Jamaica, using thermochronometry from multiple closure systems
William J. Cochran, James A. Spotila, Philip S. Prince, Ryan J. McAleer
2017, Tectonophysics (721) 292-309
The effect of rapid erosion on kinematic partitioning along transpressional plate margins is not well understood, particularly in highly erosive climates. The Blue Mountains restraining bend (BMRB) of eastern Jamaica, bound to the south by the left-lateral Enriquillo-Plantain Garden fault (EPGF), offers an opportunity to test the effects of highly...
Alternative pathways to landscape transformation: Invasive grasses, burn severity and fire frequency in arid ecosystems
Robert C. Klinger, Matthew L. Brooks
2017, Journal of Ecology (105) 1521-1533
Arid ecosystems are often vulnerable to transformation to invasive-dominated states following fire, but data on persistence of these states are sparse. The grass/fire cycle is a feedback process between invasive annual grasses and fire frequency that often leads to the formation of alternative vegetation states dominated by...
Characteristics and 40Ar/39Ar geochronology of the Erdenet Cu-Mo deposit, Mongolia
Imants Kavalieris, Bat-Erdene Khashgerel, Leah E. Morgan, Alexander Undrakhtamir, Adiya Borohul
2017, Economic Geology (112) 1033-1053
The Early to Middle Triassic Erdenet porphyry Cu-Mo deposit, in northern Mongolia, developed in a continent-continent arc collision zone, within the Central Asian orogenic belt. The porphyry system is related to multiple intrusions of crystal-crowded biotite granodiorite porphyry, which formed a composite stock about 900 m in diameter, with...
Potential for spatial displacement of Cook Inlet beluga whales by anthropogenic noise in critical habitat
Robert J. Small, Brian M. Brost, Mevin Hooten, Manuel Castellote, Jeffrey Mondragon
2017, Endangered Species Research (32) 43-57
The population of beluga whales in Cook Inlet, Alaska, USA, declined by nearly half in the mid-1990s, primarily from an unsustainable harvest, and was listed as endangered in 2008. In 2014, abundance was ~340 whales, and the population trend during 1999-2014 was -1.3% yr-1. Cook Inlet beluga whales are...
Mediterranean California’s water use future under multiple scenarios of developed and agricultural land use change
Tamara Wilson, Benjamin M. Sleeter, D. Richard Cameron
2017, PLoS ONE (12) 1-21
With growing demand and highly variable inter-annual water supplies, California’s water use future is fraught with uncertainty. Climate change projections, anticipated population growth, and continued agricultural intensification, will likely stress existing water supplies in coming decades. Using a state-and-transition simulation modeling approach, we examine a broad suite of spatially explicit...