Parallelization of GeoClaw code for modeling geophysical flows with adaptive mesh refinement on many-core systems
S. Zhang, D.A. Yuen, A. Zhu, S. Song, David L. George
2011, Conference Paper, 14th IEEE Int. Conf. on Computational Science and Engineering, CSE 2011 and 11th Int. Symp. on Pervasive Systems, Algorithms, and Networks, I-SPA 2011 and 10th IEEE Int. Conf. on IUCC 2011
We parallelized the GeoClaw code on one-level grid using OpenMP in March, 2011 to meet the urgent need of simulating tsunami waves at near-shore from Tohoku 2011 and achieved over 75% of the potential speed-up on an eight core Dell Precision T7500 workstation [1]. After submitting that work to SC11...
Decision analysis for conservation breeding: Maximizing production for reintroduction of whooping cranes
Des Smith, Sarah J. Converse, Keith Gibson, Axel Moehrenschlager, William A. Link, Glenn H. Olsen, Kelly Maguire
2011, Journal of Wildlife Management (75) 501-508
Captive breeding is key to management of severely endangered species, but maximizing captive production can be challenging because of poor knowledge of species breeding biology and the complexity of evaluating different management options. In the face of uncertainty and complexity, decision-analytic approaches can be used to identify optimal management options...
Gas hydrate saturation from acoustic impedance and resistivity logs in the Shenhu area, south China Sea
X. Wang, S. Wu, M. Lee, Y. Guo, S. Yang, J. Liang
2011, Marine and Petroleum Geology (28) 1625-1633
During the China’s first gas hydrate drilling expedition -1 (GMGS-1), gas hydrate was discovered in layers ranging from 10 to 25 m above the base of gas hydrate stability zone in the Shenhu area, South China Sea. Water chemistry, electrical resistivity logs, and acoustic impedance were used to estimate gas hydrate...
Channel evolution on the dammed Elwha River, Washington, USA
A.E. Draut, J.B. Logan, M. C. Mastin
2011, Geomorphology (127) 71-87
Like many rivers in the western U.S., the Elwha River, Washington, has changed substantially over the past century in response to natural and human forcing. The lower river is affected by two upstream dams that are slated for removal as part of a major river restoration effort. In preparation for...
Bed morphology, flow structure, and sediment transport at the outlet of Lake Huron and in the upper St. Clair River
J. A. Czuba, J.L. Best, K. A. Oberg, D.R. Parsons, P.R. Jackson, M.H. Garcia, P. Ashmore
2011, Journal of Great Lakes Research (37) 480-493
An integrated multibeam echo sounder and acoustic Doppler current profiler field survey was conducted in July 2008 to investigate the morphodynamics of the St. Clair River at the outlet of Lake Huron. The principal morphological features of the upper St. Clair River included flow-transverse bedforms that appear weakly mobile, erosive bedforms in cohesive muds, thin non-cohesive veneers of...
Controls on large landslide distribution and implications for the geomorphic evolution of the southern interior Columbia River basin
E.B. Safran, S.W. Anderson, M. Mills-Novoa, P.K. House, L. Ely
2011, Geological Society of America Bulletin (123) 1851-1862
Large landslides (>0.1 km2) are important agents of geomorphic change. While most common in rugged mountain ranges, large landslides can also be widespread in relatively low-relief (several 100 m) terrain, where their distribution has been relatively little studied. A fuller understanding of the role of large landslides in landscape evolution...
Recovering from the ShakeOut earthquake
Anne Wein, Laurie Johnson, Richard Bernknopf
2011, Earthquake Spectra (27) 521-538
Recovery from an earthquake like the M7.8 ShakeOut Scenario will be a major endeavor taking many years to complete. Hundreds of Southern California municipalities will be affected; most lack recovery plans or previous disaster experience. To support recovery planning this paper 1) extends the regional ShakeOut Scenario analysis into the...
Looking beyond fertilizer: Assessing the contribution of nitrogen from hydrologic inputs and organic matter to plant growth in the cranberry agroecosystem
S.M. Stackpoole, K.R. Kosola, B.A.A. Workmaster, N.M. Guldan, B.A. Browne, R. D. Jackson
2011, Nutrient Cycling in Agroecosystems (91) 41-54
Even though nitrogen (N) is a key nutrient for successful cranberry production, N cycling in cranberry agroecosystems is not completely understood. Prior research has focused mainly on timing and uptake of ammonium fertilizer, but the objective of our study was to evaluate the potential for additional N contributions from hydrologic...
Ecoregional differences in late-20th-century land-use and land-cover change in the U.S. northern great plains
Roger F. Auch, K. L. Sayler, D.E. Napton, Janis L. Taylor, M.S. Brooks
2011, Great Plains Research (21) 231-243
Land-cover and land-use change usually results from a combination of anthropogenic drivers and biophysical conditions found across multiple scales, ranging from parcel to regional levels. A group of four Level 111 ecoregions located in the U.S. northern Great Plains is used to demonstrate the similarities and differences in land change...
A field test of attractant traps for invasive Burmese pythons (Python molurus bivittatus) in southern Florida
R.N. Reed, K.M. Hart, G.H. Rodda, F.J. Mazzotti, R.W. Snow, M. Cherkiss, R. Rozar, S. Goetz
2011, Wildlife Research (38) 114-121
Context. Invasive Burmese pythons (Python molurus bivittatus) are established over thousands of square kilometres of southern Florida, USA, and consume a wide range of native vertebrates. Few tools are available to control the python population, and none of the available tools have been validated in the field to assess capture...
LiDAR-Assisted identification of an active fault near Truckee, California
L. E. Hunter, J. F. Howle, R.S. Rose, G.W. Bawden
2011, Bulletin of the Seismological Society of America (101) 1162-1181
We use high-resolution (1.5-2.4 points/m2) bare-earth airborne Light Detection and Ranging (LiDAR) imagery to identify, map, constrain, and visualize fault-related geomorphology in densely vegetated terrain surrounding Martis Creek Dam near Truckee, California. Bare-earth LiDAR imagery reveals a previously unrecognized and apparently youthful right-lateral strike-slip fault that exhibits laterally continuous tectonic...
Formation dynamics of subsurface hydrocarbon intrusions following the Deepwater Horizon blowout
S.A. Socolofsky, E.E. Adams, C. R. Sherwood
2011, Geophysical Research Letters (38)
Hydrocarbons released following the Deepwater Horizon (DH) blowout were found in deep, subsurface horizontal intrusions, yet there has been little discussion about how these intrusions formed. We have combined measured (or estimated) observations from the DH release with empirical relationships developed from previous lab experiments to identify the mechanisms responsible...
Widespread inclination shallowing in Permian and Triassic paleomagnetic data from Laurentia: Support from new paleomagnetic data from Middle Permian shallow intrusions in southern Illinois (USA) and virtual geomagnetic pole distributions
M. Domeier, R. Van Der Voo, F.B. Denny
2011, Tectonophysics (511) 38-52
Recent paleomagnetic work has highlighted a common and shallow inclination bias in continental redbeds. The Permian and Triassic paleomagnetic records from Laurentia are almost entirely derived from such sedimentary rocks, so a pervasive inclination error will expectedly bias the apparent polar wander path of Laurentia in a significant way. The...
Past and ongoing shifts in Joshua tree distribution support future modeled range contraction
Kenneth L. Cole, Kirsten Ironside, Jon K. Eischeid, Gregg Garfin, Phil Duffy, Chris Toney
2011, Ecological Applications (21) 137-149
The future distribution of the Joshua tree (Yucca brevifolia) is projected by combining a geostatistical analysis of 20th-century climates over its current range, future modeled climates, and paleoecological data showing its response to a past similar climate change. As climate rapidly warmed ;11 700 years ago, the range of Joshua...
Precision of two methods for estimating age from burbot otoliths
W.H. Edwards, M.A. Stapanian, A.T. Stoneman
2011, Journal of Applied Ichthyology (27) 43-48
Lower reproductive success and older age structure are associated with many burbot (Lota lota L.) populations that are declining or of conservation concern. Therefore, reliable methods for estimating the age of burbot are critical for effective assessment and management. In Lake Erie, burbot populations have declined in recent years due...
Implications of chronic wasting disease, cougar predation, and reduced recruitment for elk management
G.A. Sargeant, D.C. Weber, D.E. Roddy
2011, Journal of Wildlife Management (75) 171-177
Emerging diseases and expanding carnivore populations may have profound implications for ungulate harvest management and population regulation. To better understand effects of chronic wasting disease (CWD) and cougar (Puma concolor) predation, we studied mortality and recruitment of elk (Cervus elaphus) at Wind Cave National Park (WICA) during 2005-2009. We marked...
Alphacoronaviruses in new World bats: Prevalence, persistence, phylogeny, and potential for interaction with humans
C. Osborne, P.M. Cryan, T. J. O'Shea, L.M. Oko, C. Ndaluka, C.H. Calisher, A.D. Berglund, M.L. Klavetter, R. A. Bowen, K.V. Holmes, S.R. Dominguez
2011, PLoS ONE (6) 1-11
Bats are reservoirs for many different coronaviruses (CoVs) as well as many other important zoonotic viruses. We sampled feces and/or anal swabs of 1,044 insectivorous bats of 2 families and 17 species from 21 different locations within Colorado from 2007 to 2009. We detected alphacoronavirus RNA in bats of 4...
Digital hydrologic networks supporting applications related to spatially referenced regression modeling
J. W. Brakebill, D.M. Wolock, S.E. Terziotti
2011, Journal of the American Water Resources Association (47) 916-932
Digital hydrologic networks depicting surface‐water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the...
Home range dynamics, habitat selection, and survival of Greater Roadrunners
S.W. Kelley, D. Ransom Jr., J.A. Butcher, G.G. Schulz, B.W. Surber, W.E. Pinchak, C.A. Santamaria, L.A. Hurtado
2011, Journal of Field Ornithology (82) 165-174
Greater Roadrunners (Geococcyx californianus) are common, poorly studied birds of arid and semi-arid ecosystems in the southwestern United States. Conservation of this avian predator requires a detailed understanding of their movements and spatial requirements that is currently lacking. From 2006 to 2009, we quantified home-range and core area sizes and...
Habitat use of nesting and brood-rearing King Rails in the Illinois and Upper Mississippi River Valleys
A.J. Darrah, D.G. Krementz
2011, Waterbirds (34) 160-167
Most studies of King Rail (Rallus elegans) have investigated habitat use during the nesting season, while few comparisons have been made between the nesting and brood-rearing seasons. King Rails were located during the nesting season in Missouri using repeated surveys with call playback, and systematic searches for broods were conducted...
Verifying a computational method for predicting extreme ground motion
R.A. Harris, M. Barall, D.J. Andrews, B. Duan, S. Ma, E.M. Dunham, A.-A. Gabriel, Y. Kaneko, Y. Kase, Brad T. Aagaard, D. D. Oglesby, J.-P. Ampuero, Thomas C. Hanks, N. Abrahamson
2011, Seismological Research Letters (82) 638-644
In situations where seismological data is rare or nonexistent, computer simulations may be used to predict ground motions caused by future earthquakes. This is particularly practical in the case of extreme ground motions, where engineers of special buildings may need to design for an event that has not been historically...
Challenges of using electrical resistivity method to locate karst conduits-A field case in the Inner Bluegrass Region, Kentucky
J. Zhu, J.C. Currens, J.S. Dinger
2011, Journal of Applied Geophysics (75) 523-530
Conduits serve as major pathways for groundwater flow in karst aquifers. Locating them from the surface, however, is one of the most challenging tasks in karst research. Geophysical methods are often deployed to help locate voids by mapping variations of physical properties of the subsurface. Conduits can cause significant contrasts...
Peat Formation Processes Through the Millennia in Tidal Marshes of the Sacramento-San Joaquin Delta, California, USA
J.Z. Drexler
2011, Estuaries and Coasts (34) 900-911
The purpose of this study was to determine peat formation processes throughout the millennia in four tidal marshes in the Sacramento-San Joaquin Delta. Peat cores collected at each site were analyzed for bulk density, loss on ignition, and percent organic carbon. Core data and spline fit age-depth models were used...
Spectral heterogeneity on Phobos and Deimos: HiRISE observations and comparisons to Mars Pathfinder results
N. Thomas, R. Stelter, A. Ivanov, N.T. Bridges, Kenneth E. Herkenhoff, A. S. McEwen
2011, Planetary and Space Science (59) 1281-1292
The High-Resolution Imaging Science Experiment (HiRISE) onboard Mars Reconnaissance Orbiter (MRO) has been used to observe Phobos and Deimos at spatial scales of around 6 and 20 m/px, respectively. HiRISE (McEwen et al.; JGR, 112, CiteID E05S02, DOI: 10.1029/2005JE002605, 2007) has provided, for the first time, high-resolution colour images of...
Climate change, uncertainty, and natural resource management
J.D. Nichols, M.D. Koneff, P.J. Heglund, M. G. Knutson, M.E. Seamans, J. E. Lyons, J.M. Morton, M.T. Jones, G.S. Boomer, B. Kenneth Williams
2011, Journal of Wildlife Management (75) 6-18
Climate change and its associated uncertainties are of concern to natural resource managers. Although aspects of climate change may be novel (e.g., system change and nonstationarity), natural resource managers have long dealt with uncertainties and have developed corresponding approaches to decision-making. Adaptive resource management is an application of structured decision-making...