U.S. Geological Survey—Department of the Interior Region 11, Alaska—2021–22 biennial science report
Elizabeth M. Powers, Dee M. Williams, editor(s)
2022, Circular 1497
U.S. Geological Survey (USGS) Mission: The USGS national mission is to monitor, analyze, and predict the current and evolving dynamics of complex human and natural Earth-system interactions, and to deliver actionable information at scales and timeframes relevant to decision-makers. Consistent with the national mission, the USGS in Alaska provides...
Lower seismogenic depth model of western U.S. Earthquakes
Yuehua Zeng, Mark D. Petersen, Oliver S. Boyd
2022, Seismological Research Letters (93) 3186-3204
We present a model of the lower seismogenic depth of earthquakes in the western United States (WUS) estimated using the hypocentral depths of events M > 1, a crustal temperature model, and historical earthquake rupture depth models. Locations of earthquakes are from the Advanced National Seismic System Comprehensive Earthquake Catalog from 1980...
Updated annual and semimonthly streamflow statistics for Wild and Scenic Rivers, Owyhee Canyonlands Wilderness, southwestern Idaho, 2021
Taylor J. Dudunake, Scott D. Ducar
2022, Scientific Investigations Report 2022-5095
The U.S. Geological Survey, in cooperation with the Bureau of Land Management (BLM), continued streamflow data collection in water years 2013–21 to update daily streamflow regressions and annual and semimonthly streamflow statistics initially developed in 2012 for streams designated as “wild,” “scenic,” or “recreational” under the National Wild and...
Where land and sea meet: Brown bears and sea otters
Heather Coletti, Grant Hilderbrand, James L. Bodkin, Brenda E. Ballachey, Joy Erlenbach, George G. Esslinger, Michael P. Hannam, Kimberly A. Kloecker, Buck Mangipane, Amy Miller, Daniel Monson, Benjamin Pister, K. Griffin, K. Bodkin, Tom Smith
2022, Frontiers for Young Minds
In Katmai National Park, Alaska, USA, we have seen changes in the number of brown bears and sea otters. The number of animals of a species a habitat can support is called carrying capacity. Even though bears live on land and sea otters live in the ocean, these two mammals...
Comparing Landsat Dynamic Surface Water Extent to alternative methods of measuring inundation in developing waterbird habitats
John B. Taylor, Jeffery D. Sullivan, Claire S. Teitelbaum, Jan G. Reese, Diann Prosser
2022, Remote Sensing Applications: Society and Environment (28)
This study investigates the applicability of the Landsat Dynamic Surface Water Extent (DSWE) science product for waterbird habitat modeling in multiple non-canopied habitat types. We compare surface water distribution estimates derived from DSWE to two site-specific survey methods: visual surveys and digitized aerial imagery. These site-specific surveys were conducted on...
Dry forest decline is driven by both declining recruitment and increasing mortality in response to warm, dry conditions
Robert K. Shriver, Charles Yackulic, David M. Bell, John B. Bradford
2022, Global Ecology and Biogeography (31) 2259-2269
Aim: Anticipating when and where changes in species' demographic rates will lead to range shifts in response to changing climate remains a major challenge. Despite evidence of increasing mortality in dry forests across the globe in response to drought and warming temperatures, the overall impacts on the distribution of dry...
Probiotics beyond the farm: Benefits, costs, and considerations of using antibiotic alternatives in livestock
Kyle R. Leistikow, Rachelle Elaine Beattie, Krassimira R. Hristova
2022, Frontiers in Antibiotics (1)
The increasing global expansion of antimicrobial resistant infections warrants the development of effective antibiotic alternative therapies, particularly for use in livestock production, an agricultural sector that is perceived to disproportionately contribute to the antimicrobial resistance (AMR) crisis by consuming nearly two-thirds of the global antibiotic supply. Probiotics and probiotic derived...
An evaluation of the reliability of plumage characters for sexing adult Ruddy Turnstones Arenaria interpres morinella during northward passage in eastern North America
Peter J. Fullagar, R. Terry Chesser, Humphrey P. Sitters, Christopher C. Davey, Lawrence J. Niles, Serguei Vyacheslavovich Drovetski, M. Nandadevi Cortes-Rodriguez
2022, Wader Study (129) 138-147
We used two datasets to investigate the reliability of plumage for sexing adult Ruddy Turnstones Arenaria interpres of the morinella subspecies during May and early June in Delaware Bay, on the Mid-Atlantic Coast of the United States (39.1202°N, 75.2479°W). We first examined 23 years of data on the capture and recapture of 1,818 individual...
Revised earthquake geology inputs for the central and eastern United States and southeast Canada for the 2023 National Seismic Hazard Model
Jessica Ann Thompson Jobe, Alexandra Elise Hatem, Ryan D. Gold, Christopher DuRoss, Nadine G. Reitman, Richard W. Briggs, Camille Marie Collett
2022, Seismological Research Letters (93) 3100-3120
It has been nearly a decade since updates to seismic and fault sources in the central and eastern United States (CEUS) were last assessed for the 2012 Central and Eastern United States Seismic Source Characterization for nuclear facilities (CEUS-SSCn) and 2014 United States Geological Survey National Seismic Hazard Model (NSHM)...
Advances in coral immunity ‘omics in response to disease outbreaks
Nikki Traylor-Knowles, Andrew C. Baker, Kelsey M. Beavers, Neha Garg, Jeffrey R. Guyon, Aine C. Hawthorn, Nicholas J. MacKnight, Mónica Medina, Laura D. Mydlarz, Esther C. Peters, Julia Marie Stewart, Michael S. Studivan, Joshua D. Voss
2022, Frontiers in Marine Science (9)
Coral disease has progressively become one of the most pressing issues affecting coral reef survival. In the last 50 years, several reefs throughout the Caribbean have been severely impacted by increased frequency and intensity of disease outbreaks leading to coral death. A recent example of this is stony coral tissue...
Discovering hidden geothermal signatures using non-negative matrix factorization with customized k-means clustering
Velimir V. Vesselinov, Bulbul Ahmmed, Maruti K. Mudunuru, Jeff D. Pepin, Erick R. Burns, Drew L. Siler, Satish Karra, Richard S. Middleton
2022, Geothermics (106)
Discovery of hidden geothermal resources is challenging. It requires the mining of large datasets with diverse data attributes representing subsurface hydrogeological and geothermal conditions. The commonly used play fairway analysis approach typically incorporates subject-matter expertise to analyze regional data to estimate geothermal characteristics and favorability. We demonstrate an alternative approach...
Selecting auditory alerting stimuli for eagles on the basis of auditory evoked potentials
Benjamin Goller, Patrice Baumhardt, Ernesto Dominguez-Villegas, Todd E. Katzner, Esteban Fernandez-Juricic, Jeffrey R. Lucas
2022, Conservation Physiology (10)
Development of wind energy facilities results in interactions between wildlife and wind turbines. Raptors, including bald and golden eagles, are among the species known to incur mortality from these interactions. Several alerting technologies have been proposed to mitigate this mortality by increasing eagle avoidance of wind energy facilities. However, there...
Physics-guided architecture (PGA) of LSTM models for uncertainty quantification in lake temperature modeling
Arka Daw, R. Quinn Thomas, Cayelan C. Carey, Jordan Read, Alison P. Appling, Anuj Karpatne
2022, Book chapter, Knowledge-guided machine learning: Accelerating discovery using scientific knowledge and data
This chapter focuses on meeting the need to produce neural network outputs that are physically consistent and also express uncertainties, a rare combination to date. It explains the effectiveness of physics-guided architecture - long-short-term-memory (PGA-LSTM) in achieving better generalizability and physical consistency over data collected from Lake Mendota in Wisconsin...
Physics-guided neural networks (PGNN): An application in lake temperature modeling
Arka Daw, Anuj Karpatne, William Watkins, Jordan Read, Vipin Kumar
2022, Book chapter, Knowledge-guided machine learning: Accelerating discovery using scientific knowledge and data
This chapter introduces a framework for combining scientific knowledge of physics-based models with neural networks to advance scientific discovery. It explains termed physics-guided neural networks (PGNN), leverages the output of physics-based model simulations along with observational features in a hybrid modeling setup to generate predictions using a neural network architecture....
Physics-guided recurrent neural networks for predicting lake water temperature
Xiaowei Jia, Jared Willard, Anuj Karpatne, Jordan Read, Jacob Aaron Zwart, Michael Steinbach, Vipin Kumar
2022, Book chapter, Knowledge-guided machine learning: Accelerating discovery using scientific knowledge and data
This chapter presents a physics-guided recurrent neural network model (PGRNN) for predicting water temperature in lake systems. Standard machine learning (ML) methods, especially deep learning models, often require a large amount of labeled training samples, which are often not available in scientific problems due to the substantial human labor and...
Planetary-scale change to the biosphere signalled by global species translocations can be used to identify the Anthropocene
Mark A. Williams, Reinhold Leinfelder, Anthony D. Barnosky, Martin J Head, Francine M G McCarthy, Cearreta. Alejandro, Stephen J Himson, Rachael Holmes, Colin N. Waters, Jan Zalasiewicz, Simon Turner, Mary McGann, Elizabeth A. Hadly, M. Allison Stegner, Paul Michael Pilkington, Jerome Kaiser, Juan Carlos Berrio, Ian P. Wilkinson, Jens Zinke, Kristine L. DeLong
2022, Palaeontology (65)
We examine three distinctive biostratigraphic signatures associated with: hunting and gathering, landscape domestication, and globalisation. All three signatures have significant fossil records of regional importance that can be correlated inter-regionally and help describe the developing pattern of human expansion and appropriation of resources. While none have individual first or last...
Daily surface temperatures for 185,549 lakes in the conterminous United States estimated using deep learning (1980–2020)
Jared D. Willard, Jordan Read, Simon Nemer Topp, Gretchen J. A. Hansen, Vipin Kumar
2022, Limnology & Oceanography: Letters (7) 287-301
The dataset described here includes estimates of historical (1980–2020) daily surface water temperature, lake metadata, and daily weather conditions for lakes bigger than 4 ha in the conterminous United States (n = 185,549), and also in situ temperature observations for a subset of lakes (n = 12,227). Estimates were generated using a long short-term memory...
Identifying nutrient sources and sinks to the South Platte River and Cherry Creek, Denver, CO, during low-flow conditions in 2019–2020
William A. Battaglin, Tanner William Chapin
2022, River Research and Applications (38) 1860-1883
Elevated concentrations and loads of nutrients in the South Platte River and Cherry Creek in Denver, Colorado, may have adverse effects on those streams and downstream water bodies, including increased production of algae, eutrophication, and decreased recreational opportunities. This article describes streamflow and concentrations and loads of nutrients for the...
Decision support for aquatic restoration based on species-specific responses to disturbance
James E. McKenna Jr., Catherine Riseng, Kevin Wehrly
2022, Ecology and Evolution (12)
Disturbances to aquatic habitats are not uniformly distributed within the Great Lakes and acute effects can be strongest in nearshore areas where both landscape and within lake effects can have strong influence. Furthermore, different fish species respond to disturbances in different ways. A means to identify...
Comparing imidacloprid, clothianidin, and azoxystrobin runoff from lettuce fields using a soil drench or treated seeds in the Salinas Valley, California
Emily Woodward, Michelle Hladik, Anson Main, Michael Cahn, James Orlando, Jennifer Teerlink
2022, Environmental Pollution (315)
Neonicotinoid insecticide use has increased over the last decade, including as agricultural seed treatments (application of chemical in a coating to the seed prior to planting). In California, multiple crops, including lettuce, can be grown using neonicotinoid treated seeds or receive a direct neonicotinoid soil application (drenching) at planting. Using...
The Bathy-drone: An autonomous unmanned drone-tethered sonar system
Antonio L. Diaz, Andrew E. Ortega, Henry Tingle, Andres Pulido, Orlando Cordero, Marisa Nelson, Nicholas E. Cocoves, Jaejeong Shin, Raymond Carthy, Benjamin E. Wilkinson, Peter G. Ifju
2022, Drones (6)
A unique drone-based system for underwater mapping (bathymetry) was developed at the University of Florida. The system, called the “Bathy-drone”, comprises a drone that drags, via a tether, a small vessel on the water surface in a raster pattern. The vessel is equipped with a recreational commercial off-the-shelf (COTS) sonar...
Return from dormancy: Rapid inflation and seismic unrest driven by transcrustal magma transfer at Mt. Edgecumbe (L’´ux Shaa) Volcano, Alaska
R. Grapenthin, Yitian Cheng, Mario Angarita, Darren Tan, Franz J. Meyer, David Fee, Aaron Wech
2022, Geophysical Research Letters (49)
In April 2022, a seismic swarm near Mt. Edgecumbe in southeast Alaska suggested renewed activity at this transform fault volcano, which was last active ≈800 years ago. Previously, thin rhyolitic tephras were deposited 5 and 4 ka. Satellite radar data from 2014 to 2022 resolves line-of-sight rapid inflation up...
Pleistocene–Holocene vicariance, not Anthropocene landscape change, explains the genetic structure of American black bear (Ursus americanus) populations in the American Southwest and northern Mexico
Matthew J. Gould, James W. Cain III, Todd C. Atwood, Larisa E. Harding, Heather E. Johnson, Dave P. Onorato, Frederic S. Winslow, Gary W. Roemer
2022, Ecology and Evolution (12)
The phylogeography of the American black bear (Ursus americanus) is characterized by isolation into glacial refugia, followed by population expansion and genetic admixture. Anthropogenic activities, including overharvest, habitat loss, and transportation infrastructure, have also influenced their landscape genetic structure. We describe the genetic structure...
Congruence among multiple indices of habitat preference for species facing human-induced rapid environmental change: A case study using the Brewer's sparrow
Max Carlin, Anna D. Chalfoun
2022, Ecological Society Bulletin (3)
Accurate evaluations of habitat preference are key to understanding optimal conditions for wildlife survival and reproduction. Habitat selection, however, usually is evaluated using a single index of preference, and congruence among multiple, relevant indices of preference is examined rarely.We assessed the concordance between...
New frontiers in bird migration research
Andrea Flack, Ellen O. Aikens, Andrea Kolzsch, Elham Nourani, Katherine R.S. Snell, Wolfgang Fiedler, Nils Linek, Hans-Gunther Bauer, Kasper Thorup, Jesko Partecke, Martin Wikelski, Hannah J. Williams
2022, Current Biology (32) R1187-R1199
Bird migrations are impressive behavioral phenomena, representing complex spatiotemporal strategies to balance costs of living while maximizing fitness. The field of bird migration research has made great strides over the past decades, yet fundamental gaps remain. Technologies have sparked a transformation in the study of bird migration research by revealing...