Behavior and dam passage of juvenile Chinook salmon and juvenile steelhead at Detroit Reservoir and Dam, Oregon, March 2012-February 2013
John W. Beeman, Hal C. Hansel, Amy C. Hansen, Scott D. Evans, Philip V. Haner, Tyson W. Hatton, Eric E. Kofoot, Jamie M. Sprando, Collin D. Smith
2014, Open-File Report 2014-1144
The in-reservoir movements and dam passage of individual juvenile Chinook salmon (Oncorhynchus tshawytscha) and juvenile steelhead (Oncorhynchus mykiss) were studied at Detroit Reservoir and Dam, near Detroit, Oregon, during 2012 and 2013. The goal of the study was to provide data to inform decisions about future downstream passage alternatives and...
Historical changes in Nebraska's lotic fish assemblages: Implications of anthropogenic alterations
Christopher D. Smith, Jesse R. Fischer, Michael C. Quist
2014, American Midland Naturalist (172) 160-184
The plains of midwestern North America have undergone significant anthropogenic alterations following European settlement with consequent effects to lotic fish assemblage structure. We examined trends in fish assemblage structure and function in Nebraska's lotic systems using site-specific, presence-absence data from historical (1939–1940) and contemporary surveys (2003–2005; n = 183). Shifts...
Brine contamination to aquatic resources from oil and gas development in the Williston Basin, United States
Tara L. Chesley-Preston, James L. Coleman, Robert A. Gleason, Seth S. Haines, Karen E. Jenni, Timothy L. Nieman, Zell E. Peterman, Max Post van der Burg, Todd M. Preston, Bruce D. Smith, Brian A. Tangen, Joanna N. Thamke
Robert A. Gleason, Brian A. Tangen, editor(s)
2014, Scientific Investigations Report 2014-5017
The Williston Basin, which includes parts of Montana, North Dakota, and South Dakota in the United States and the provinces of Manitoba and Saskatchewan in Canada, has been a leading domestic oil and gas producing region for more than one-half a century. Currently, there are renewed efforts to develop oil...
Geochemical and mineralogical maps for soils of the conterminous United States
David B. Smith, William F. Cannon, Laurel G. Woodruff, Federico Solano, Karl J. Ellefsen
2014, Open-File Report 2014-1082
The U.S. Geological Survey began sampling in 2007 for a low-density (1 site per 1,600 square kilometers, 4,857 sites) geochemical and mineralogical survey of soils in the conterminous United States as part of the North American Soil Geochemical Landscapes Project. The sampling protocol for the national-scale survey included, at each...
Delineation of brine contamination in and near the East Poplar oil field, Fort Peck Indian Reservation, northeastern Montana, 2004-09
Joanna N. Thamke, Bruce D. Smith
2014, Scientific Investigations Report 2014-5024
The extent of brine contamination in the shallow aquifers in and near the East Poplar oil field is as much as 17.9 square miles and appears to be present throughout the entire saturated zone in contaminated areas. The brine contamination affects 15–37 billion gallons of groundwater. Brine contamination in the...
Herbivores and nutrients control grassland plant diversity via light limitation
Elizabeth T. Borer, Eric W. Seabloom, Daniel S. Gruner, W. Stanley Harpole, Helmut Hillebrand, Eric M. Lind, Peter B. Alder, Juan Alberti, T. Michael Anderson, Jonathan D. Bakker, Lori Biederman, Dana Blumenthal, Cynthia S. Brown, Lars A. Brudvig, Yvonne M. Buckley, Marc Cadotte, Cheng-Jin Chu, Elsa E. Cleland, Michael J. Crawley, Pedro Daleo, Ellen Ingman Damschen, Kendi F. Davies, Nicole M. DeCrappeo, Guozhen Du, Jennifer Firn, Yann Hautier, Robert W. Heckman, Andy Hector, Janneke HilleRisLambers, Oscar Iribarne, Julia A. Klein, Johannes M.H. Knops, Kimberly J. La Pierre, Andrew D.B. Leakey, Wei Li, Andrew S. MacDougall, Rebecca L. McCulley, Brett A. Melbourne, Charles E. Mitchell, Joslin L. Moore, Brent Mortensen, Lydia R. O'Halloran, John L. Orrock, Jesús Pascual, Suzanne M. Prober, David A. Pyke, Anita C. Risch, Martin Schuetz, Melinda D. Smith, Carly J. Stevens, Lauren L. Sullivan, Ryan J. Williams, Peter D. Wragg, Justin P. Wright, Louie H. Yang
2014, Nature (508) 517-520
Human alterations to nutrient cycles and herbivore communities are affecting global biodiversity dramatically. Ecological theory predicts these changes should be strongly counteractive: nutrient addition drives plant species loss through intensified competition for light, whereas herbivores prevent competitive exclusion by increasing ground-level light, particularly in productive systems. Here we use experimental...
Passage and survival probabilities of juvenile Chinook salmon at Cougar Dam, Oregon, 2012
John W. Beeman, Scott D. Evans, Philip V. Haner, Hal C. Hansel, Amy C. Hansen, Collin D. Smith, Jamie M. Sprando
2014, Open-File Report 2014-1038
This report describes studies of juvenile-salmon dam passage and apparent survival at Cougar Dam, Oregon, during two operating conditions in 2012. Cougar Dam is a 158-meter tall rock-fill dam used primarily for flood control, and passes water through a temperature control tower to either a powerhouse penstock or to a...
In vivo retention of ingested Au NPs by Daphnia magna: No evidence for trans-epithelial alimentary uptake
Farhan R. Khan, Gabrielle M. Kennaway, Marie-Noële Croteau, Agnieszka Dybowska, Brian D. Smith, António J.A. Nogueira, Philip S. Rainbow, Samuel N. Luoma, Eugenia Valsami-Jones
2014, Chemosphere (100) 97-104
In vivo studies with Daphnia magna remain inconclusive as to whether engineered nanoparticles (NPs) are internalized into tissues after ingestion. Here we used a three-pronged approach to study the in vivo retention and efflux kinetics of 20 nm citrate stabilized Au NPs ingested by this key aquatic species. Daphnids were...
Borehole geophysical data for the East Poplar oil field area, Fort Peck Indian Reservation, northeastern Montana, 1993, 2004, and 2005
Bruce D. Smith, Joanna N. Thamke, Christa Tyrrell
2014, Open-File Report 2013-1288
Areas of high electrical conductivity in shallow aquifers in the East Poplar oil field area were delineated by the U.S. Geological Survey (USGS), in cooperation with the Fort Peck Assiniboine and Sioux Tribes, in order to interpret areas of saline-water contamination. Ground, airborne, and borehole geophysical data were collected in...
Active tensor magnetic gradiometer system final report for Project MM–1514
David V. Smith, Jeffrey D. Phillips, S. Raymond Hutton
2014, Open-File Report 2013-1228
An interactive computer simulation program, based on physical models of system sensors, platform geometry, Earth environment, and spheroidal magnetically-permeable targets, was developed to generate synthetic magnetic field data from a conceptual tensor magnetic gradiometer system equipped with an active primary field generator. The system sensors emulate the prototype tensor magnetic...
Ancient aqueous environments at Endeavour crater, Mars
R. E. Arvidson, S. W. Squyres, J.F. Bell III, J.G. Catalano, B. C. Clark, L.S. Crumpler, P.A. de Souza Jr., A.G. Fairén, W. H. Farrand, V.K. Fox, Ralf Gellert, A. Ghosh, M.P. Golombeck, J.P. Grotzinger, E.A. Guinness, Kenneth E. Herkenhoff, B.L. Jolliff, A.H. Knoll, R. Li, S. M. McLennan, D. W. Ming, D. W. Mittlefehldt, Johnnie N. Moore, R.V. Morris, S.L. Murchie, T. J. Parker, G. Paulsen, J.W. Rice, S. W. Ruff, M. D. Smith, M.J. Wolff
2014, Science (343)
Opportunity has investigated in detail rocks on the rim of the Noachian age Endeavour crater, where orbital spectral reflectance signatures indicate the presence of Fe+3-rich smectites. The signatures are associated with fine-grained, layered rocks containing spherules of diagenetic or impact origin. The layered rocks are overlain by breccias, and both...
Management and monitoring of the endangered Shenandoah salamander under climate change: Workshop report 10-12 April 2012
Evan H. Campbell Grant, John E. B. Wofford, D. R. Smith, J. Dennis, C. Hawkins-Hoffman, J. Schaberl, M. Foley, M. Bogle
2014, Natural Resource Report NPS/SHEN/NRR—2014/867
Here we report on a structured decision making (SDM) process to identify management strategies to ensure persistence of the federally endangered Shenandoah salamander (Plethodon shenandoah), given that it may be at increased extinction risk under projected climate change. The focus of this report is the second of two SDM workshops;...
Multielevation calibration of frequency-domain electromagnetic data
Burke J. Minsley, M. Andy Kass, Greg Hodges, Bruce D. Smith
2014, Geophysics (79) E201-E216
Systematic calibration errors must be taken into account because they can substantially impact the accuracy of inverted subsurface resistivity models derived from frequency-domain electromagnetic data, resulting in potentially misleading interpretations. We have developed an approach that uses data acquired at multiple elevations over the same location to assess calibration errors....
Avian response to conservation buffers in agricultural landscapes during winter
Kristine O. Evans, L. Wes Burger Jr., Samuel K. Riffell, Mark D. Smith, Daniel J. Twedt, R. Randy Wilson, Shawchyi Vorisek, Catherine Rideout, Kate Heyden
2013, Wildlife Society Bulletin (38) 257-264
Native herbaceous vegetation cover along row‐crop field edges (i.e., field buffers) increases breeding densities of many bird species. However, the effect of field buffers on bird species during the non‐breeding season is less understood. We compared density, avian richness, and avian conservation value on row‐crop fields containing buffers strategically designed...
Geochemical and mineralogical data for soils of the conterminous United States
David B. Smith, William F. Cannon, Laurel G. Woodruff, Federico Solano, James E. Kilburn, David L. Fey
2013, Data Series 801
In 2007, the U.S. Geological Survey initiated a low-density (1 site per 1,600 square kilometers, 4,857 sites) geochemical and mineralogical survey of soils of the conterminous United States as part of the North American Soil Geochemical Landscapes Project. Sampling and analytical protocols were developed at a workshop in 2003, and...
Landscape-scale effects of fire severity on mixed-conifer and red fir forest structure in Yosemite National Park
Van R. Kane, James A. Lutz, Susan L. Roberts, Douglas F. Smith, Robert J. McGaughey, Nicholas A. Povak, Matthew L. Brooks
2013, Forest Ecology and Management (287) 17-31
While fire shapes the structure of forests and acts as a keystone process, the details of how fire modifies forest structure have been difficult to evaluate because of the complexity of interactions between fires and forests. We studied this relationship across 69.2 km2 of Yosemite National Park, USA, that was...
Effects of surface applications of biosolids on groundwater quality and trace-element concentrations in crops near Deer Trail, Colorado, 2004-2010
Tracy J.B. Yager, James G. Crock, David B. Smith, Edward T. Furlong, Philip L. Hageman, William T. Foreman, James L. Gray, Rhiannon C. ReVello
2013, Scientific Investigations Report 2013-5065
The U.S. Geological Survey (USGS), in cooperation with Metro Wastewater Reclamation District (Metro District), studied biosolids composition and the effects of biosolids applications on groundwater quality and trace-element concentrations in crops of the Metro District properties near Deer Trail, Colorado, during 2004 through 2010. Priority parameters for each monitoring component...
Relative influence of human harvest, carnivores, and weather on adult female elk survival across western North America
Jedediah Brodie, Heather E. Johnson, Michael Mitchell, Peter Zager, Kelly Proffitt, Mark Hebblewhite, Matthew Kauffman, Bruce Johnson, John Bissonette, Chad Bishop, Justin Gude, Jeff Herbert, Kent Hersey, Mark Hurley, Paul M. Lukacs, Scott McCorquodale, Eliot McIntire, Josh Nowak, Hall Sawyer, Douglas Smith, P.J. White
2013, Journal of Applied Ecology (50) 295-305
Well-informed management of harvested species requires understanding how changing ecological conditions affect demography and population dynamics, information that is lacking for many species. We have limited understanding of the relative influence of carnivores, harvest, weather and forage availability on elk Cervus elaphus demography, despite the ecological and economic importance of...
Relationships between the health of Alaska Native communities and our environment -- phase 1, exploring and communicating
Durelle Smith
2013, Fact Sheet 2013-3066
Alaska Natives depend on local natural resources for nutritional and, for many, spiritual health. As a result, public health in Alaska is strongly influenced by the relationship between people and their surrounding physical, chemical, and biological environments. Alaska is vast with diverse wildlife and plant communities that are valued as...
History and evaluation of national-scale geochemical data sets for the United States
David B. Smith, Steven M. Smith, John D. Horton
2013, Geoscience Frontiers (4) 167-183
Six national-scale, or near national-scale, geochemical data sets for soils or stream sediments exist for the United States. The earliest of these, here termed the ‘Shacklette’ data set, was generated by a U.S. Geological Survey (USGS) project conducted from 1961 to 1975. This project used soil collected from a depth...
Microhabitat use of the diamond darter
Stuart A. Welsh, Dustin M. Smith, Nate D. Taylor
2013, Ecology of Freshwater Fish (22) 587-595
The only known extant population of the diamond darter (Crystallaria cincotta) exists in the lower 37 km of Elk River, WV, USA. Our understanding of diamond darter habitat use was previously limited, because few individuals have been observed during sampling with conventional gears. We quantified microhabitat use of diamond darters based...
Extending airborne electromagnetic surveys for regional active layer and permafrost mapping with remote sensing and ancillary data, Yukon Flats ecoregion, central Alaska
Neal J. Pastick, M. Torre Jorgenson, Bruce K. Wylie, Burke J. Minsley, Lei Ji, Michelle Ann Walvoord, Bruce D. Smith, Jared D. Abraham, Joshua R. Rose
2013, Permafrost and Periglacial Processes (24) 184-199
Machine-learning regression tree models were used to extrapolate airborne electromagnetic resistivity data collected along flight lines in the Yukon Flats Ecoregion, central Alaska, for regional mapping of permafrost. This method of extrapolation (r = 0.86) used subsurface resistivity, Landsat Thematic Mapper (TM) at-sensor reflectance, thermal, TM-derived spectral indices, digital elevation models and...
Behavior and dam passage of juvenile Chinook salmon at Cougar Reservoir and Dam, Oregon, March 2011 - February 2012
John W. Beeman, Hal C. Hansel, Amy C. Hansen, Philip V. Haner, Jamie M. Sprando, Collin D. Smith, Scott D. Evans, Tyson W. Hatton
2013, Open-File Report 2013-1079
The movements and dam passage of juvenile Chinook salmon implanted with acoustic transmitters and passive integrated transponder tags were studied at Cougar Reservoir and Dam, near Springfield, Oregon. The purpose of the study was to provide information to aid with decisions about potential alternatives for improving downstream passage conditions for...
U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative: 2011 annual report
Zachary H. Bowen, Cameron L. Aldridge, Patrick J. Anderson, Timothy J. Assal, Laura Biewick, Steven W. Blecker, Gregory K. Boughton, Natasha B. Carr, Anna D. Chalfoun, Geneva W. Chong, Melanie L. Clark, Jay E. Diffendorfer, Bradley C. Fedy, Katharine Foster, Steven L. Garman, Stephanie Germaine, Matthew G. Hethcoat, JoAnn Holloway, Collin G. Homer, Matthew J. Kauffman, Douglas Keinath, Natalie Latysh, Daniel J. Manier, Robert R. McDougal, Cynthia P. Melcher, Kirk A. Miller, Jessica Montag, Edward M. Olexa, Christopher J. Potter, Spencer Schell, Sarah L. Shafer, David B. Smith, Lisa L. Stillings, Michael J. Sweat, Michele L. Tuttle, Anna B. Wilson
2013, Open-File Report 2013-1033
This is the fourth report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual work activities. In FY2011, there were 37 ongoing, completed, or new projects conducted under the five major multi-disciplinary science and technical-assistance activities: (1) Baseline Synthesis, (2) Targeted Monitoring...
Intercontinental dispersal of bacteria and archaea by transpacific winds
D. Smith, H. Timonen, D. Jaffe, Dale W. Griffin, M. Birmele, K.D. Perry, P.D. Ward, M. Roberts
2013, Applied and Environmental Microbiology (79) 1134-1139
Microorganisms are abundant in the upper atmosphere, particularly downwind of arid regions, where winds can mobilize large amounts of topsoil and dust. However, the challenge of collecting samples from the upper atmosphere and reliance upon culture-based characterization methods have prevented a comprehensive understanding of globally dispersed airborne microbes. In spring...
