The structure and composition of Holocene coral reefs in the Middle Florida Keys
Lauren T. Toth, Anastasios Stathakopoulos, Ilsa B. Kuffner
2016, Open-File Report 2016-1074
The Florida Keys reef tract (FKRT) is the largest coral-reef ecosystem in the continental United States. The modern FKRT extends for 362 kilometers along the coast of South Florida from Dry Tortugas National Park in the southwest, through the Florida Keys National Marine Sanctuary (FKNMS), to Fowey Rocks reef in...
Evaluation of a floating fish guidance structure at a hydrodynamically complex river junction in the Sacramento-San Joaquin River Delta, California, USA
Jason G. Romine, Russell W. Perry, Adam C. Pope, Paul Stumpner, Theresa L. Liedtke, Kevin K. Kumagai, Ryan L. Reeves
2016, Marine and Freshwater Research (68) 878-888
Survival of out-migrating juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento–San Joaquin River delta, California, USA, varies by migration route. Survival of salmonids that enter the interior and southern Delta can be as low as half that of salmonids that remain in the main-stem Sacramento River. Reducing entrainment into the...
Characterization of mean transit time at large springs in the Upper Colorado River Basin, USA: A tool for assessing groundwater discharge vulnerability
John E. Solder, Bernard J. Stolp, Victor M. Heilweil, David D. Susong
2016, Hydrogeology Journal (24) 2017-2033
Environmental tracers (noble gases, tritium, industrial gases, stable isotopes, and radio-carbon) and hydrogeology were interpreted to determine groundwater transit-time distribution and calculate mean transit time (MTT) with lumped parameter modeling at 19 large springs distributed throughout the Upper Colorado River Basin (UCRB), USA. The predictive value of the MTT to...
Setting priorities for private land conservation in fire-prone landscapes: Are fire risk reduction and biodiversity conservation competing or compatible objectives?
Alexandra D. Syphard, Van Butsic, Avi Bar-Massada, Jon E. Keeley, Jeff A. Tracey, Robert N. Fisher
2016, Ecology and Society (21)
Although wildfire plays an important role in maintaining biodiversity in many ecosystems, fire management to protect human assets is often carried out by different agencies than those tasked for conserving biodiversity. In fact, fire risk reduction and biodiversity conservation are often viewed as competing objectives. Here we explored the role...
Water-quality trends and constituent-transport analysis for selected sampling sites in the Milltown Reservoir/Clark Fork River Superfund Site in the upper Clark Fork Basin, Montana, water years 1996–2015
Steven K. Sando, Aldo V. Vecchia
2016, Scientific Investigations Report 2016-5100
During the extended history of mining in the upper Clark Fork Basin in Montana, large amounts of waste materials enriched with metallic contaminants (cadmium, copper, lead, and zinc) and the metalloid trace element arsenic were generated from mining operations near Butte and milling and smelting operations near Anaconda. Extensive deposition...
Invasive species: Ocean ecosystem case studies for earth systems and environmental sciences
Pamela J. Schofield, Mary E. Brown
2016, Earth Systems and Environmental Sciences
Marine species are increasingly transferred from areas where they are native to areas where they are not. Some nonnative species become invasive, causing undesirable impacts to environment, economy and/or human health. Nonnative marine species can be introduced through a variety of vectors, including shipping, trade, inland corridors (such as canals),...
An international borderland of concern: Conservation of biodiversity in the Lower Rio Grande Valley
David M. Leslie Jr.
2016, Scientific Investigations Report 2016-5078
The Lower Rio Grande Valley (LRGV) of southern Texas is located on the United States-Mexico borderland and represents a 240-kilometer (150-mile) linear stretch that ends at the Gulf of Mexico. The LRGV represents a unique transition between temperate and tropical conditions and, as such, sustains an exceptionally high diversity of...
Study of thermochemical sulfate reduction mechanism using compound specific sulfur isotope analysis
Alexander Meshoulam, Geoffrey S. Ellis, Ward Said Ahmad, Andrei Deev, Alex L. Sessions, Yongchun Tang, Jess F. Adkins, Jinzhong Liu, William P. Gilhooly III, Zeev Aizenshtat, Alon Amrani
2016, Geochimica et Cosmochimica Acta (188) 73-92
The sulfur isotopic fractionation associated with the formation of organic sulfur compounds (OSCs) during thermochemical sulfate reduction (TSR) was studied using gold-tube pyrolysis experiments to simulate TSR. The reactants used included n-hexadecane (n-C16) as a model organic compound with sulfate, sulfite, or elemental sulfur as the sulfur source. At the...
Spatial and temporal variability in estuary habitat use by American alligators
Ikuko Fujisaki, Kristen M. Hart, Michael S. Cherkiss, Frank J. Mazzotti, Jeffrey S. Beauchamp, Brian M. Jeffery, Laura A. Brandt
2016, Estuaries and Coasts (39) 1561-1569
Estuarine habitat occupied by Alligator mississippiensis, a primarily freshwater species, is spatially and temporally heterogeneous largely due to a salinity gradient that fluctuates. Using long-term night light survey data, we examined seasonal patterns in alligators’ habitat use by size classes in midstream and downstream estuary zones of Shark River,...
First direct confirmation of grass carp spawning in a Great Lakes tributary
Holly S. Embke, Patrick M. Kocovsky, Cathy A. Richter, Jeremy J. Pritt, Christine M. Mayer, Song Qian
2016, Journal of Great Lakes Research (42) 899-903
Grass carp (Ctenopharyngodon idella), an invasive species of Asian carp, has been stocked for many decades in the United States for vegetation control. Adult individuals have been found in all of the Great Lakes except Lake Superior, but no self-sustaining populations have yet been identified in Great Lakes tributaries. In...
Internal loading of phosphorus in western Lake Erie
Gerald Matisoff, Eliza M. Kaltenberg, Rebecca L. Steely, Stephanie K. Hummel, Jinyu Seo, Kenneth J. Gibbons, Thomas B. Bridgeman, Youngwoo Seo, Mohsen Behbahani, William F. James, Laura Johnson, Phuong Doan, Maria Dittrich, Mary Anne Evans, Justin D. Chaffin
2016, Journal of Great Lakes Research (42) 775-788
This study applied eight techniques to obtain estimates of the diffusive flux of phosphorus (P) from bottom sediments throughout the western basin of Lake Erie. The flux was quantified from both aerobic and anaerobic incubations of whole cores; by monitoring the water encapsulated in bottom chambers; from pore water concentration...
Hierarchical animal movement models for population-level inference
Mevin Hooten, Frances E. Buderman, Brian M. Brost, Ephraim M. Hanks, Jacob S. Ivans
2016, Environmetrics (27) 322-333
New methods for modeling animal movement based on telemetry data are developed regularly. With advances in telemetry capabilities, animal movement models are becoming increasingly sophisticated. Despite a need for population-level inference, animal movement models are still predominantly developed for individual-level inference. Most efforts to upscale the inference to...
Island characteristics within wetlands influence waterbird nest success and abundance
C. Alex Hartman, Joshua T. Ackerman, Mark P. Herzog
2016, Journal of Wildlife Management (80) 1177-1188
Coastal waterbird populations are threatened by habitat loss and degradation from urban and agricultural development and forecasted sea level rise associated with climate change. Remaining wetlands often must be managed to ensure that waterbird habitat needs, and other ecosystem functions, are met. For many waterbirds, the availability of island nesting...
Effects of haying on breeding birds in CRP grasslands
Lawrence D. Igl, Douglas H. Johnson
2016, Journal of Wildlife Management (80) 1189-1204
The Conservation Reserve Program (CRP) is a voluntary program that is available to agricultural producers to help protect environmentally sensitive or highly erodible land. Management disturbances of CRP grasslands generally are not allowed unless authorized to provide relief to livestock producers during severe drought or a similar natural disaster (i.e.,...
Evaluating habitat associations of a fish assemblage at multiple spatial scales in a minimally disturbed stream using low‐cost remote sensing
Brandon D. Cheek, Timothy B. Grabowski, Preston T. Bean, Jillian R. Groeschel, Stephan J. Magnelia
2016, Aquatic Conservation: Marine and Freshwater Ecosystems (26) 20-34
Habitat heterogeneity at multiple scales is a major factor affecting fish assemblage structure. However, assessments that examine these relationships at multiple scales concurrently are lacking. The lack of assessments at these scales is a critical gap in understanding as conservation and restoration efforts typically work at these levels.A combination...
Life history diversity in Klamath River steelhead
Brian W. Hodge, Peggy Wilzbach, Walter G. Duffy, Rebecca M. Quinones, James A. Hobbs
2016, Transactions of the American Fisheries Society (145) 227-238
Oncorhynchus mykiss exhibits a vast array of life histories, which increases its likelihood of persistence by spreading risk of extirpation among different pathways. The Klamath River basin (California–Oregon) provides a particularly interesting backdrop for the study of life history diversity in O. mykiss, in part because the river is slated for a...
Mining-related sediment and soil contamination in a large Superfund site: Characterization, habitat implications, and remediation
Kyle E. Juracek, K. D. Drake
2016, Environmental Management (58) 721-740
Historical mining activity (1850–1970) in the now inactive Tri-State Mining District provided an ongoing source of lead and zinc to the environment including the US Environmental Protection Agency Superfund site located in Cherokee County, southeast Kansas, USA. The resultant contamination adversely affected biota and caused human health problems and risks....
Time-varying land subsidence detected by radar altimetry: California, Taiwan and north China
Cheinway Hwang, Yuande Yang, Ricky Kao, Jiancheng Han, C.K. Shum, Devin L. Galloway, Michelle Sneed, Wei-Chia Hung, Yung-Sheng Cheng, Fei Li
2016, Scientific Reports (6) 1-12
Contemporary applications of radar altimetry include sea-level rise, ocean circulation, marine gravity, and ice sheet elevation change. Unlike InSAR and GNSS, which are widely used to map surface deformation, altimetry is neither reliant on highly temporally-correlated ground features nor as limited by the available spatial coverage, and can provide long-term...
Estimating carbon sequestration in the piedmont ecoregion of the United States from 1971 to 2010
Jinxun Liu, Benjamin M. Sleeter, Zhiliang Zhu, Linda S. Heath, Zhengxi Tan, Tamara Wilson, Jason T. Sherba, Decheng Zhou
2016, Carbon Balance and Management (11) 1-13
Background: Human activities have diverse and profound impacts on ecosystem carbon cycles. The Piedmont ecoregion in the eastern United States has undergone significant land use and land cover change in the past few decades. The purpose of this study was to use newly available land use and land cover change...
Fifty-seventh supplement to the American Ornithologists' Union Check-list of North American Birds
R. Terry Chesser, Kevin J Burns, Carla Cicero, Jon L. Dunn, Andrew W. Kratter, Irby J. Lovette, Pamela C. Rasmussen, J.V. Remsen Jr., James D. Rising, Douglas F. Stotz, Kevin Winker
2016, The Auk (133) 544-560
This is the 16th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between April 15, 2015, and April 15, 2016, by the AOU's Committee on Classification and Nomenclature—North and Middle America. The Committee has continued...
Pacific walrus coastal haulout database, 1852-2016— Background report
Anthony S. Fischbach, Anatoly A. Kochnev, Joel L. Garlich-Miller, Chadwick V. Jay
2016, Open-File Report 2016-1108
Walruses are large benthic predators that rest out of water between foraging bouts. Coastal “haulouts” (places where walruses rest) are formed by adult males in summer and sometimes by females and young when sea ice is absent, and are often used repeatedly across seasons and years. Understanding the geography and historical...
An automated approach to Litchfield and Wilcoxon's evaluation of dose–effect experiments using the R package LW1949
Jean V. Adams, Karen Slaght, Michael A. Boogaard
2016, Environmental Toxicology and Chemistry (35) 3058-3061
The authors developed a package, LW1949, for use with the statistical software R to automatically carry out the manual steps of Litchfield and Wilcoxon's method of evaluating dose–effect experiments. The LW1949 package consistently finds the best fitting dose–effect relation by minimizing the chi-squared statistic of the observed and expected number...
Arctic sea ice decline contributes to thinning lake ice trend in northern Alaska
Vladimir Alexeev, Christopher D. Arp, Benjamin M. Jones, Lei Cai
2016, Environmental Research Letters (11)
Field measurements, satellite observations, and models document a thinning trend in seasonal Arctic lake ice growth, causing a shift from bedfast to floating ice conditions. September sea ice concentrations in the Arctic Ocean since 1991 correlate well (r = +0.69,p < 0.001) to this lake regime shift. To understand how and to what extent...
Effects of aquifer storage and recovery activities on water quality in the Little Arkansas River and Equus Beds Aquifer, south-central Kansas, 2011–14
Mandy L. Stone, Jessica D. Garrett, Barry C. Poulton, Andrew C. Ziegler
2016, Scientific Investigations Report 2016-5042
The Equus Beds aquifer in south-central Kansas is aprimary water source for the city of Wichita. The Equus Beds aquifer storage and recovery (ASR) project was developed to help the city of Wichita meet increasing current (2016) and future water demands. The Equus Beds ASR project pumps water out of...
State-and-transition simulation models: a framework for forecasting landscape change
Colin Daniel, Leonardo Frid, Benjamin M. Sleeter, Marie-Josee Fortin
2016, Methods in Ecology and Evolution (7) 1413-1423
SummaryA wide range of spatially explicit simulation models have been developed to forecast landscape dynamics, including models for projecting changes in both vegetation and land use. While these models have generally been developed as separate applications, each with a separate purpose and audience, they share many...
